BLASTX 2.2.4 [Aug-26-2002]
Query= 131b6
         (322 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23467199|ref|ZP_00122783.1| COG0479: Succinate dehydrogenase/...    31   5.5
gi|32029495|ref|ZP_00132508.1| COG0479: Succinate dehydrogenase/...    31   5.5


>gi|23467199|ref|ZP_00122783.1| COG0479: Succinate
           dehydrogenase/fumarate reductase, Fe-S protein subunit
           [Haemophilus somnus 129PT]
          Length = 276

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 10  RNKDSNCRMQEMEHFMNPSPFVLDLSHSLILLTNPKPLILNFLCDSIDFHPHSS 171
           R+   + R++ + +F      V+DLSH +  L + KP I+      +D  PH+S
Sbjct: 103 RDYSGHMRIEPLANFPIERDLVVDLSHFIESLESIKPYIIGNKAPELDGKPHTS 156


>gi|32029495|ref|ZP_00132508.1| COG0479: Succinate
           dehydrogenase/fumarate reductase, Fe-S protein subunit
           [Haemophilus somnus 2336]
          Length = 256

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 10  RNKDSNCRMQEMEHFMNPSPFVLDLSHSLILLTNPKPLILNFLCDSIDFHPHSS 171
           R+   + R++ + +F      V+DLSH +  L + KP I+      +D  PH+S
Sbjct: 83  RDYSGHMRIEPLANFPIERDLVVDLSHFIESLESIKPYIIGNKAPELDGKPHTS 136


  Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
    Posted date:  Aug 11, 2004 12:04 AM
  Number of letters in database: 661,712,633
  Number of sequences in database:  1,967,186

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 271,169,336
Number of Sequences: 1967186
Number of extensions: 3891064
Number of successful extensions: 12423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12423
length of database: 661,712,633
effective HSP length: 82
effective length of database: 500,403,381
effective search space used: 12009681144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

[DB home][top]