Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= 248b11
(228 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|7496493|pir||T15617 hypothetical protein C25F6.2 - Caenorhabd... 53 2e-06
>gi|7496493|pir||T15617 hypothetical protein C25F6.2 - Caenorhabditis
elegans
Length = 1131
Score = 53.1 bits (126), Expect = 2e-06
Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Frame = +2
Query: 14 LHLSLLTANHYHIPDSLLM--KKLRLISIFWDFYYSESILFSSIGS 145
L+ S ++ N + S L +KLRLISIFWDFYYSESILFSSIGS
Sbjct: 1078 LNASFVSTNRKSLSYSRLSTDEKLRLISIFWDFYYSESILFSSIGS 1123
Score = 50.8 bits (120), Expect = 7e-06
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +1
Query: 1 DILNASFVSTNRKSLSYSRLSTDEK 75
DILNASFVSTNRKSLSYSRLSTDEK
Sbjct: 1076 DILNASFVSTNRKSLSYSRLSTDEK 1100
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,286,866
Number of Sequences: 1967186
Number of extensions: 1819571
Number of successful extensions: 3398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3398
length of database: 661,712,633
effective HSP length: 51
effective length of database: 561,386,147
effective search space used: 13473267528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)