BLASTX 2.2.4 [Aug-26-2002]
Query= 278e11
         (214 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17540548|ref|NP_500483.1| putative membrane protein (4E879) [...    48   6e-05


>gi|17540548|ref|NP_500483.1| putative membrane protein (4E879)
           [Caenorhabditis elegans]
 gi|9802962|gb|AAF99970.1| Hypothetical protein F49F1.3
           [Caenorhabditis elegans]
          Length = 196

 Score = 47.8 bits (112), Expect = 6e-05
 Identities = 25/36 (69%), Positives = 26/36 (71%)
 Frame = -3

Query: 170 RHEARIEEGRIYXXXXXXXXXXPLIDEKSPPIPLKI 63
           +HEARIEEGRIY          PLIDEKSPPIPLKI
Sbjct: 90  KHEARIEEGRIYFFFPPPAPAIPLIDEKSPPIPLKI 125


  Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
    Posted date:  Aug 11, 2004 12:04 AM
  Number of letters in database: 661,712,633
  Number of sequences in database:  1,967,186

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,826,433
Number of Sequences: 1967186
Number of extensions: 2494234
Number of successful extensions: 9662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9662
length of database: 661,712,633
effective HSP length: 46
effective length of database: 571,222,077
effective search space used: 13709329848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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