Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= 368b9
(371 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17565722|ref|NP_508011.1| putative protein (7.4 kD) (5V259) [... 38 0.054
>gi|17565722|ref|NP_508011.1| putative protein (7.4 kD) (5V259)
[Caenorhabditis elegans]
gi|7509840|pir||T26894 hypothetical protein Y44A6D.2 -
Caenorhabditis elegans
gi|3880947|emb|CAA19515.1| Hypothetical protein Y44A6D.2
[Caenorhabditis elegans]
Length = 76
Score = 37.7 bits (86), Expect = 0.054
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -2
Query: 349 SASGQPVDTTGGVPPAQ 299
+ASGQPVDTTGGVPPAQ
Sbjct: 60 AASGQPVDTTGGVPPAQ 76
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 350,263,456
Number of Sequences: 1967186
Number of extensions: 5003025
Number of successful extensions: 11723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11717
length of database: 661,712,633
effective HSP length: 99
effective length of database: 466,961,219
effective search space used: 11207069256
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)