Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= B0213_15
         (219 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17557242|ref|NP_504111.1| Neuropeptide-Like Protein (nlp-27) ...    35   0.56
gi|39588659|emb|CAE58183.1| Hypothetical protein CBG01275 [Caeno...    35   0.56


>gi|17557242|ref|NP_504111.1| Neuropeptide-Like Protein (nlp-27)
           [Caenorhabditis elegans]
 gi|25396403|pir||E89016 protein B0213.2 [imported] - Caenorhabditis
           elegans
 gi|2736486|gb|AAC47930.1| Neuropeptide-like protein protein 27
           [Caenorhabditis elegans]
          Length = 72

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 18/43 (41%), Positives = 18/43 (41%)
 Frame = +1

Query: 43  ACFMAASAQWXXXXXXXXXXXXXXXXXXXXXXXXXRRRMWGSP 171
           ACFMAASAQW                         RRRMWGSP
Sbjct: 15  ACFMAASAQWGYGGMPYGGYGGMGGYGMGGYGMGYRRRMWGSP 57


>gi|39588659|emb|CAE58183.1| Hypothetical protein CBG01275
           [Caenorhabditis briggsae]
          Length = 70

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 18/43 (41%), Positives = 18/43 (41%)
 Frame = +1

Query: 43  ACFMAASAQWXXXXXXXXXXXXXXXXXXXXXXXXXRRRMWGSP 171
           ACFMAASAQW                         RRRMWGSP
Sbjct: 15  ACFMAASAQWGYGGMPYGGYGGYGMGGYGMGGYGMRRRMWGSP 57


  Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
    Posted date:  Aug 11, 2004 12:04 AM
  Number of letters in database: 661,712,633
  Number of sequences in database:  1,967,186

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,145,001
Number of Sequences: 1967186
Number of extensions: 1437711
Number of successful extensions: 2747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2744
length of database: 661,712,633
effective HSP length: 48
effective length of database: 567,287,705
effective search space used: 13614904920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


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