Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= B0213_15
(219 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17557242|ref|NP_504111.1| Neuropeptide-Like Protein (nlp-27) ... 35 0.56
gi|39588659|emb|CAE58183.1| Hypothetical protein CBG01275 [Caeno... 35 0.56
>gi|17557242|ref|NP_504111.1| Neuropeptide-Like Protein (nlp-27)
[Caenorhabditis elegans]
gi|25396403|pir||E89016 protein B0213.2 [imported] - Caenorhabditis
elegans
gi|2736486|gb|AAC47930.1| Neuropeptide-like protein protein 27
[Caenorhabditis elegans]
Length = 72
Score = 34.7 bits (78), Expect = 0.56
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = +1
Query: 43 ACFMAASAQWXXXXXXXXXXXXXXXXXXXXXXXXXRRRMWGSP 171
ACFMAASAQW RRRMWGSP
Sbjct: 15 ACFMAASAQWGYGGMPYGGYGGMGGYGMGGYGMGYRRRMWGSP 57
>gi|39588659|emb|CAE58183.1| Hypothetical protein CBG01275
[Caenorhabditis briggsae]
Length = 70
Score = 34.7 bits (78), Expect = 0.56
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = +1
Query: 43 ACFMAASAQWXXXXXXXXXXXXXXXXXXXXXXXXXRRRMWGSP 171
ACFMAASAQW RRRMWGSP
Sbjct: 15 ACFMAASAQWGYGGMPYGGYGGYGMGGYGMGGYGMRRRMWGSP 57
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,145,001
Number of Sequences: 1967186
Number of extensions: 1437711
Number of successful extensions: 2747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2744
length of database: 661,712,633
effective HSP length: 48
effective length of database: 567,287,705
effective search space used: 13614904920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)