Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= C41G7_3
         (594 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7497297|pir||T19892 hypothetical protein C41G7.1 - Caenorhabd...   372   e-102
gi|17505971|ref|NP_492525.1| human Survival Motor Neuron gene ho...   372   e-102
gi|39579756|emb|CAE56707.1| Hypothetical protein CBG24493 [Caeno...   219   3e-56
gi|13259531|ref|NP_075015.1| survival of motor neuron 2, centrom...    77   2e-13
gi|13259512|ref|NP_075012.1| survival of motor neuron 1, telomer...    77   3e-13
gi|11968084|ref|NP_071954.1| survival motor neuron [Rattus norve...    68   1e-10
gi|2832313|gb|AAC01747.1| survival motor neuron [Rattus norvegicus]    67   2e-10
gi|38383032|gb|AAH62404.1| Survival motor neuron [Rattus norvegi...    67   2e-10
gi|45383718|ref|NP_989530.1| survival motor neuron [Gallus gallu...    66   5e-10
gi|18859385|ref|NP_571266.1| survival motor neuron [Danio rerio]...    64   2e-09
gi|27447276|gb|AAM18209.1| survival of motor neuron [Felis catus]      63   5e-09
gi|38174294|gb|AAH60942.1| Survival motor neuron [Danio rerio]         60   4e-08
gi|31075799|gb|AAP42462.1| survival motor neuron [Canis familiaris]    56   4e-07
gi|3024614|sp|O02771|SMN_CANFA Survival motor neuron protein >gn...    56   4e-07
gi|1588319|prf||2208336A SMN gene                                      55   7e-07
gi|6755580|ref|NP_035550.1| survival motor neuron [Mus musculus]...    55   1e-06
gi|26023801|gb|AAN77614.1| survival of motor neuron protein [Mus...    55   1e-06
gi|13259527|ref|NP_075013.1| survival of motor neuron 2, centrom...    54   2e-06
gi|4507091|ref|NP_000335.1| survival of motor neuron 1, telomeri...    54   2e-06
gi|736411|gb|AAA64505.1| putative open reading frame; duplicate ...    54   2e-06
gi|27462896|gb|AAO15639.1| survival motor neuron protein [Bos ta...    50   2e-05
gi|27462898|gb|AAO15640.1| survival motor neuron protein [Bos ta...    50   2e-05
gi|28849927|ref|NP_783632.1| survival of motor neuron 1, telomer...    50   2e-05
gi|47215909|emb|CAG00384.1| unnamed protein product [Tetraodon n...    49   7e-05
gi|46249514|gb|AAH68721.1| LOC398438 protein [Xenopus laevis]          48   2e-04
gi|15809658|gb|AAL07278.1| survival motor neuron [Xenopus laevis]      48   2e-04
gi|27924238|gb|AAH45073.1| LOC398438 protein [Xenopus laevis]          48   2e-04
gi|3450887|gb|AAC32608.1| survival motor neuron protein [Danio r...    46   4e-04
gi|48101280|ref|XP_395091.1| hypothetical protein XP_395091 [Api...    44   0.002
gi|17647939|ref|NP_524112.1| CG16725-PA [Drosophila melanogaster...    44   0.002
gi|34864382|ref|XP_213506.2| similar to RIKEN cDNA 2410004J23 [R...    44   0.002
gi|16944474|emb|CAD11375.1| conserved hypothetical protein [Neur...    44   0.002
gi|6942162|gb|AAF32332.1| survival motor neuron protein [Oryzias...    44   0.002
gi|27369569|ref|NP_766017.1| RIKEN cDNA 2410004J23 [Mus musculus...    42   0.008
gi|5032113|ref|NP_005862.1| survival motor neuron domain contain...    41   0.014
gi|47086827|ref|NP_997766.1| survival motor neuron domain contai...    41   0.014
gi|48140540|ref|XP_393514.1| similar to LD28068p [Apis mellifera]      41   0.019
gi|15077040|gb|AAK83041.1| survival motor neuron protein [Bos ta...    39   0.055
gi|50749781|ref|XP_421753.1| PREDICTED: similar to Survival of m...    39   0.055
gi|32415319|ref|XP_328139.1| hypothetical protein [Neurospora cr...    38   0.12
gi|31231113|ref|XP_318468.1| ENSANGP00000014329 [Anopheles gambi...    38   0.16
gi|50369151|gb|AAH76962.1| Unknown (protein for MGC:89399) [Xeno...    38   0.16
gi|38102896|gb|EAA49677.1| hypothetical protein MG08592.4 [Magna...    37   0.21
gi|46431353|gb|EAK90932.1| hypothetical protein CaO19.9371 [Cand...    37   0.21
gi|46431346|gb|EAK90926.1| hypothetical protein CaO19.1805 [Cand...    37   0.27
gi|15077042|gb|AAK83042.1| survival motor neuron protein [Bos ta...    36   0.46
gi|31216850|ref|XP_316313.1| ENSANGP00000020645 [Anopheles gambi...    35   0.79
gi|29376400|ref|NP_815554.1| permease, putative [Enterococcus fa...    35   0.79
gi|12584630|emb|CAC27400.1| survival motor neuron protein [Plati...    35   0.79
gi|48826661|ref|ZP_00287849.1| COG0577: ABC-type antimicrobial p...    35   1.0
gi|49094046|ref|XP_408484.1| hypothetical protein AN4347.2 [Aspe...    35   1.3
gi|47834228|gb|AAT38836.1| PrtF2 [Streptococcus pyogenes]              35   1.3
gi|34305617|gb|AAQ63615.1| anthocyanidin 3-O-glucoside-6''-O-mal...    34   1.8
gi|14278178|pdb|1G5V|A Chain A, Solution Structure Of The Tudor ...    34   1.8
gi|48839220|ref|ZP_00296154.1| COG0065: 3-isopropylmalate dehydr...    34   2.3
gi|50287045|ref|XP_445952.1| unnamed protein product [Candida gl...    33   3.9
gi|45509282|ref|ZP_00161617.1| COG0642: Signal transduction hist...    33   5.1
gi|29726468|pdb|1MHN|A Chain A, High Resolution Crystal Structur...    33   5.1
gi|50551979|ref|XP_503464.1| hypothetical protein [Yarrowia lipo...    32   6.7
gi|28868414|ref|NP_791033.1| lipoprotein, putative [Pseudomonas ...    32   6.7
gi|17228069|ref|NP_484617.1| cyanophycin synthetase [Nostoc sp. ...    32   8.7
gi|25027856|ref|NP_737910.1| putative molybdopterin biosynthesis...    32   8.7
gi|28829080|gb|AAO51644.1| similar to Dictyostelium discoideum (...    32   8.7


>gi|7497297|pir||T19892 hypothetical protein C41G7.1 -
           Caenorhabditis elegans
 gi|3874905|emb|CAB02838.1| Hypothetical protein C41G7.1a
           [Caenorhabditis elegans]
 gi|4753664|emb|CAB41945.1| SMN protein [Caenorhabditis elegans]
          Length = 197

 Score =  372 bits (956), Expect = e-102
 Identities = 187/197 (94%), Positives = 187/197 (94%)
 Frame = -1

Query: 594 MEVDDVWDDTELIKMYDESLQEISKNETSAKITSRKFKGEDGKMYTWKVGGKCMAPYEEN 415
           MEVDDVWDDTELIKMYDESLQEISKNETSAKITSRKFKGEDGKMYTWKVGGKCMAPYEEN
Sbjct: 1   MEVDDVWDDTELIKMYDESLQEISKNETSAKITSRKFKGEDGKMYTWKVGGKCMAPYEEN 60

Query: 414 GEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDLWLNEEAIADAVKAENDLQKTK 235
           GEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDLWLNEEAIADAVKAENDLQKTK
Sbjct: 61  GEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDLWLNEEAIADAVKAENDLQKTK 120

Query: 234 KTSTVNSVAHSNSKSTSSAPNTSMXXXXXXXXXXPNIIAMAPVNQKEAMNSMLMSWYMSG 55
           KTSTVNSVAHSNSKSTSSAPNTSM          PNIIAMAPVNQKEAMNSMLMSWYMSG
Sbjct: 121 KTSTVNSVAHSNSKSTSSAPNTSMPFPSFAPPVPPNIIAMAPVNQKEAMNSMLMSWYMSG 180

Query: 54  YHTGYYQALADQKNVQN 4
           YHTGYYQALADQKNVQN
Sbjct: 181 YHTGYYQALADQKNVQN 197


>gi|17505971|ref|NP_492525.1| human Survival Motor Neuron gene
           homolog (22.9 kD) (smn-1) [Caenorhabditis elegans]
 gi|6002908|gb|AAF00192.1| survival motor neuron protein
           [Caenorhabditis elegans]
 gi|14530375|emb|CAC42273.1| Hypothetical protein C41G7.1b
           [Caenorhabditis elegans]
          Length = 207

 Score =  372 bits (956), Expect = e-102
 Identities = 187/197 (94%), Positives = 187/197 (94%)
 Frame = -1

Query: 594 MEVDDVWDDTELIKMYDESLQEISKNETSAKITSRKFKGEDGKMYTWKVGGKCMAPYEEN 415
           MEVDDVWDDTELIKMYDESLQEISKNETSAKITSRKFKGEDGKMYTWKVGGKCMAPYEEN
Sbjct: 11  MEVDDVWDDTELIKMYDESLQEISKNETSAKITSRKFKGEDGKMYTWKVGGKCMAPYEEN 70

Query: 414 GEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDLWLNEEAIADAVKAENDLQKTK 235
           GEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDLWLNEEAIADAVKAENDLQKTK
Sbjct: 71  GEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDLWLNEEAIADAVKAENDLQKTK 130

Query: 234 KTSTVNSVAHSNSKSTSSAPNTSMXXXXXXXXXXPNIIAMAPVNQKEAMNSMLMSWYMSG 55
           KTSTVNSVAHSNSKSTSSAPNTSM          PNIIAMAPVNQKEAMNSMLMSWYMSG
Sbjct: 131 KTSTVNSVAHSNSKSTSSAPNTSMPFPSFAPPVPPNIIAMAPVNQKEAMNSMLMSWYMSG 190

Query: 54  YHTGYYQALADQKNVQN 4
           YHTGYYQALADQKNVQN
Sbjct: 191 YHTGYYQALADQKNVQN 207




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