Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= C42D4_1
(4203 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|25145495|ref|NP_501127.2| RNA Polymerase, Class III (C), rna ... 2732 0.0
gi|7497334|pir||T34157 hypothetical protein C42D4.8 - Caenorhabd... 2702 0.0
gi|39593525|emb|CAE61817.1| Hypothetical protein CBG05787 [Caeno... 2567 0.0
gi|50749362|ref|XP_421603.1| PREDICTED: similar to polymerase (R... 1468 0.0
gi|39725938|ref|NP_008986.2| polymerase (RNA) III (DNA directed)... 1466 0.0
gi|3122765|sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III ... 1457 0.0
gi|34876886|ref|XP_341389.1| similar to polymerase (RNA) III (DN... 1420 0.0
gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon n... 1358 0.0
gi|31228896|ref|XP_318130.1| ENSANGP00000017502 [Anopheles gambi... 1343 0.0
gi|28828616|gb|AAO51219.1| similar to Homo sapiens (Human). Poly... 1216 0.0
gi|50309797|ref|XP_454912.1| unnamed protein product [Kluyveromy... 1193 0.0
gi|50426995|ref|XP_462102.1| unnamed protein product [Debaryomyc... 1191 0.0
gi|50293727|ref|XP_449275.1| unnamed protein product [Candida gl... 1181 0.0
gi|45190855|ref|NP_985109.1| AER252Cp [Eremothecium gossypii] >g... 1181 0.0
gi|19112298|ref|NP_595506.1| putative dna-directed rna polymeras... 1180 0.0
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Can... 1177 0.0
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Cand... 1177 0.0
gi|6324690|ref|NP_014759.1| RNA polymerase III large subunit; Rp... 1171 0.0
gi|49080526|ref|XP_403771.1| hypothetical protein UM06156.1 [Ust... 1144 0.0
gi|50549343|ref|XP_502142.1| hypothetical protein [Yarrowia lipo... 1119 0.0
gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Crypto... 1111 0.0
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa (japonic... 1097 0.0
gi|49090376|ref|XP_406649.1| hypothetical protein AN2512.2 [Aspe... 1090 0.0
gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1 [Gib... 1056 0.0
gi|32405384|ref|XP_323305.1| hypothetical protein [Neurospora cr... 1046 0.0
gi|38104101|gb|EAA50718.1| hypothetical protein MG04477.4 [Magna... 1041 0.0
gi|8777343|dbj|BAA96933.1| DNA-directed RNA polymerase II larges... 1016 0.0
gi|19074431|ref|NP_585937.1| DNA-DIRECTED RNA POLYMERASE III 160... 959 0.0
gi|15238597|ref|NP_200812.1| DNA-directed RNA polymerase, putati... 927 0.0
gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III s... 732 0.0
gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Aca... 732 0.0
gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 su... 732 0.0
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Cand... 732 0.0
gi|50557434|ref|XP_501909.1| hypothetical protein [Yarrowia lipo... 732 0.0
gi|50409953|ref|XP_456921.1| unnamed protein product [Debaryomyc... 725 0.0
gi|17530899|ref|NP_511124.1| CG1554-PA [Drosophila melanogaster]... 716 0.0
gi|279533|pir||RNFF2L DNA-directed RNA polymerase (EC 2.7.7.6) I... 714 0.0
gi|45187959|ref|NP_984182.1| ADR086Cp [Eremothecium gossypii] >g... 714 0.0
gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase... 709 0.0
gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase... 709 0.0
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase... 709 0.0
gi|15233338|ref|NP_195305.1| DNA-directed RNA polymerase II larg... 709 0.0
gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [... 708 0.0
gi|6320061|ref|NP_010141.1| RNA polymerase II large subunit; Rpo... 708 0.0
gi|31226322|ref|XP_317690.1| ENSANGP00000010305 [Anopheles gambi... 707 0.0
gi|21280517|gb|AAM45151.1| RNA polymerase II largest subunit [Na... 706 0.0
gi|50289967|ref|XP_447415.1| unnamed protein product [Candida gl... 705 0.0
gi|23484677|gb|EAA19924.1| RNA polymerase A/beta'/A'' subunit, p... 704 0.0
gi|50310581|ref|XP_455310.1| unnamed protein product [Kluyveromy... 702 0.0
gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana] 701 0.0
gi|7428072|pir||JDMU1 DNA-directed RNA polymerase (EC 2.7.7.6) I... 701 0.0
gi|7521936|pir||T31435 DNA-directed RNA polymerase (EC 2.7.7.6) ... 700 0.0
gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase... 697 0.0
gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsi... 692 0.0
gi|162223|gb|AAA30233.1| RNA polymerase III 689 0.0
gi|133355|sp|P08968|RPC1_TRYBB DNA-DIRECTED RNA POLYMERASE III L... 689 0.0
gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Enc... 686 0.0
gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [As... 673 0.0
gi|49074728|ref|XP_401478.1| hypothetical protein UM03863.1 [Ust... 669 0.0
gi|7521935|pir||T31436 DNA-directed RNA polymerase (EC 2.7.7.6) ... 664 0.0
gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit 661 0.0
gi|133352|sp|P25202|RPC1_GIALA DNA-DIRECTED RNA POLYMERASE III L... 659 0.0
gi|102174|pir||S22812 DNA-directed RNA polymerase (EC 2.7.7.6) I... 659 0.0
gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit 656 0.0
gi|38104302|gb|EAA50893.1| hypothetical protein MG04652.4 [Magna... 655 0.0
gi|24642282|ref|NP_573071.1| CG17209-PA [Drosophila melanogaster... 650 0.0
gi|13812229|ref|NP_113360.1| RNA polymerase III largest subunit ... 642 0.0
gi|31544947|gb|AAH53071.1| BC053071 protein [Mus musculus] 641 0.0
gi|12083527|gb|AAG48836.1| similar to Arabidopsis thaliana DNA-d... 641 0.0
gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit [Art... 634 e-180
gi|11261184|pir||T43260 RNA polymerase (EC 2.7.7.-) II - Trichom... 630 e-179
gi|15920465|ref|NP_376134.1| 884aa long hypothetical DNA-directe... 626 e-177
gi|133407|sp|P11512|RPA1_SULAC DNA-directed RNA polymerase subun... 606 e-171
gi|99252|pir||B33926 DNA-directed RNA polymerase (EC 2.7.7.6) ch... 603 e-170
gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit... 602 e-170
gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase, subuni... 601 e-170
gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit... 601 e-170
gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase, subuni... 600 e-169
gi|48249473|gb|AAT40981.1| RNA polymerase II largest subunit [En... 599 e-169
gi|401016|sp|P31813|RPA1_THECE DNA-directed RNA polymerase subun... 597 e-169
gi|12642612|gb|AAK00310.1| DNA-dependent RNA polymerase II large... 591 e-167
gi|6624245|dbj|BAA88487.1| RNA polymerase III largest subunit [L... 575 e-162
gi|18312086|ref|NP_558753.1| DNA-directed RNA polymerase subunit... 571 e-161
gi|20090127|ref|NP_616202.1| DNA-directed RNA polymerase, subuni... 568 e-160
gi|21280521|gb|AAM45153.1| RNA polymerase II largest subunit [Ce... 568 e-160
gi|19112465|ref|NP_595673.1| DNA-directed RNA polymerase II larg... 568 e-160
gi|49085690|ref|XP_404946.1| hypothetical protein AN0809.2 [Aspe... 568 e-160
gi|12642616|gb|AAK00312.1| DNA-dependent RNA polymerase II large... 566 e-159
gi|45358926|ref|NP_988483.1| RNA polymerase, alpha subunit [Meth... 564 e-159
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Crypto... 564 e-159
gi|48840817|ref|ZP_00297743.1| COG0086: DNA-directed RNA polymer... 560 e-158
gi|46142319|ref|ZP_00148404.2| COG0086: DNA-directed RNA polymer... 559 e-157
gi|21228373|ref|NP_634295.1| DNA-directed RNA polymerase subunit... 557 e-157
gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Ps... 556 e-156
gi|15679064|ref|NP_276181.1| DNA-dependent RNA polymerase, subun... 555 e-156
gi|1173129|sp|P41556|RPA1_METVA DNA-directed RNA polymerase subu... 554 e-156
gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Ma... 554 e-155
gi|32417630|ref|XP_329293.1| hypothetical protein [Neurospora cr... 549 e-154
gi|11499472|ref|NP_070713.1| DNA-directed RNA polymerase, subuni... 549 e-154
gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pi... 548 e-154
gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Ny... 548 e-154
gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [We... 548 e-154
gi|7434727|pir||I38186 RNA polymerase II largest subunit - human... 545 e-153
gi|133327|sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II la... 545 e-153
gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cr... 545 e-153
gi|4505939|ref|NP_000928.1| DNA directed RNA polymerase II polyp... 545 e-153
gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit 545 e-153
gi|6677795|ref|NP_033115.1| polymerase (RNA) II (DNA directed) p... 545 e-153
gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit 545 e-153
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,... 544 e-153
gi|16554525|ref|NP_444249.1| DNA-directed RNA polymerase subunit... 543 e-152
gi|6624243|dbj|BAA88486.1| RNA polymerase III largest subunit [E... 543 e-152
gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Am... 544 e-152
gi|34871645|ref|XP_343923.1| similar to DNA-directed RNA polymer... 541 e-152
gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gib... 541 e-152
gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II large... 541 e-152
gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Ze... 540 e-152
gi|133398|sp|P15350|RPA1_HALSA DNA-directed RNA polymerase subun... 540 e-151
gi|14601674|ref|NP_148215.1| DNA-directed RNA polymerase subunit... 540 e-151
gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cy... 540 e-151
gi|25288429|pir||H84415 DNA-directed RNA polymerase subunit A [i... 537 e-151
gi|2117914|pir||A33926 DNA-directed RNA polymerase (EC 2.7.7.6) ... 536 e-150
gi|11261194|pir||T43217 RNA polymerase (EC 2.7.7.-) II, largest ... 534 e-150
gi|39580358|emb|CAE61463.1| Hypothetical protein CBG05355 [Caeno... 533 e-149
gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Za... 534 e-149
gi|32565657|ref|NP_500523.2| DNA-directed RNA polymerase II larg... 529 e-148
gi|7494579|pir||T29959 DNA-directed RNA polymerase II large subu... 529 e-148
gi|102468|pir||A34092 DNA-directed RNA polymerase (EC 2.7.7.6) I... 529 e-148
gi|21542435|sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II ... 529 e-148
gi|11261182|pir||T43026 probable DNA-directed RNA polymerase (EC... 529 e-148
gi|12642610|gb|AAK00309.1| DNA-dependent RNA polymerase II large... 525 e-147
gi|12642614|gb|AAK00311.1| DNA-dependent RNA polymerase II large... 525 e-147
gi|13542012|ref|NP_111700.1| DNA-directed RNA polymerase, subuni... 523 e-146
gi|48477330|ref|YP_023036.1| DNA-directed RNA polymerase subunit... 519 e-145
gi|13812416|ref|NP_113534.1| DNA-directed RNA polymerase II larg... 516 e-144
gi|16081520|ref|NP_393871.1| probable DNA-directed RNA polymeras... 514 e-144
gi|13274097|emb|CAC33855.1| RNA polymerase II largest subunit [C... 504 e-141
gi|41615286|ref|NP_963784.1| NEQ503 [Nanoarchaeum equitans Kin4-... 503 e-140
gi|12642618|gb|AAK00313.1| DNA-dependent RNA polymerase II large... 498 e-139
gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dic... 495 e-138
gi|133402|sp|P09846|RPA1_METTW DNA-directed RNA polymerase subun... 494 e-138
gi|20159757|gb|AAM12031.1| RNA polymerase III subunit RPC155-C [... 492 e-137
gi|48852482|ref|ZP_00306668.1| COG0086: DNA-directed RNA polymer... 490 e-136
gi|7521934|pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) ... 488 e-136
gi|22002086|gb|AAK97604.2| RNA polymerase II largest subunit [Tr... 488 e-136
gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit 486 e-135
gi|102082|pir||B31494 DNA-directed RNA polymerase (EC 2.7.7.6) I... 486 e-135
gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit 486 e-135
gi|102081|pir||A31494 DNA-directed RNA polymerase (EC 2.7.7.6) I... 486 e-135
gi|23619219|ref|NP_705181.1| DNA-directed RNA polymerase 3 large... 484 e-135
gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit [Tr... 484 e-135
gi|133329|sp|P17545|RPB1_TRYBB DNA-directed RNA polymerase II la... 484 e-134
gi|133332|sp|P17546|RPB2_TRYBB DNA-directed RNA polymerase II la... 483 e-134
gi|13274160|emb|CAC33863.1| RNA polymerase II largest subunit [P... 482 e-134
gi|133354|sp|P27625|RPC1_PLAFA DNA-DIRECTED RNA POLYMERASE III L... 481 e-134
gi|323135|pir||A45597 DNA-directed RNA polymerase (EC 2.7.7.6) I... 481 e-134
gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon n... 479 e-133
gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster] 478 e-133
gi|48102532|ref|XP_395380.1| similar to DNA-directed RNA polymer... 476 e-132
gi|13274099|emb|CAC33856.1| RNA polymerase II largest subunit [G... 473 e-131
gi|20159751|gb|AAM12030.1| RNA polymerase III subunit RPC155-B [... 473 e-131
gi|15678327|ref|NP_275442.1| DNA-dependent RNA polymerase, subun... 468 e-130
gi|28422598|gb|AAH44092.1| Rpc155-prov protein [Xenopus laevis] 467 e-130
gi|13310932|gb|AAF36438.2| RNA polymerase II largest subunit [Le... 466 e-129
gi|21280519|gb|AAM45152.1| RNA polymerase II largest subunit [Oc... 466 e-129
gi|13183799|gb|AAK15346.1| RNA polymerase II largest subunit [Le... 464 e-129
gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leish... 455 e-126
gi|13274164|emb|CAC33861.1| RNA polymerase II largest subunit [P... 452 e-125
gi|13274162|emb|CAC33859.1| RNA polymerase II largest subunit [N... 449 e-124
gi|13274158|emb|CAC33864.1| RNA polymerase II largest subunit [P... 449 e-124
gi|13274166|emb|CAC33858.1| RNA polymerase II largest subunit [L... 447 e-124
gi|31127034|gb|AAF26651.2| RNA polymerase II largest subunit [Po... 446 e-123
gi|31127036|gb|AAF26656.2| RNA polymerase II largest subunit [Sc... 445 e-123
gi|17647875|ref|NP_523743.1| CG10122-PA [Drosophila melanogaster... 433 e-119
gi|31127038|gb|AAF26658.2| RNA polymerase II largest subunit [Sp... 433 e-119
gi|13274174|emb|CAC33869.1| RNA polymerase II largest subunit [V... 431 e-118
gi|3914818|sp|P91875|RPA1_DROME DNA-DIRECTED RNA POLYMERASE I LA... 424 e-117
gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Ma... 424 e-117
gi|31127042|gb|AAF26663.2| RNA polymerase II largest subunit [Ta... 421 e-116
gi|31126986|gb|AAK11870.2| RNA polymerase II largest subunit [Ab... 419 e-115
gi|46431960|gb|EAK91475.1| hypothetical protein CaO19.1839 [Cand... 417 e-115
gi|31127024|gb|AAF26639.2| RNA polymerase II largest subunit [Li... 417 e-115
gi|50312167|ref|XP_456115.1| unnamed protein product [Kluyveromy... 417 e-114
gi|45188247|ref|NP_984470.1| ADR374Cp [Eremothecium gossypii] >g... 417 e-114
gi|31127010|gb|AAF26623.2| RNA polymerase II largest subunit [Ct... 417 e-114
gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit [Pe... 415 e-114
gi|31127008|gb|AAK11873.2| RNA polymerase II largest subunit [Bo... 415 e-114
gi|31127030|gb|AAF26646.2| RNA polymerase II largest subunit [Ne... 414 e-114
gi|31127003|gb|AAF26621.2| RNA polymerase II largest subunit [Se... 414 e-114
gi|19113092|ref|NP_596300.1| dna-directed rna polymerase i 190 k... 412 e-113
gi|4995|emb|CAA32887.1| unnamed protein product [Schizosaccharom... 412 e-113
gi|38232371|gb|AAR15021.1| RNA polymerase II largest subunit [Sc... 410 e-112
gi|172215|gb|AAA34890.1| RNA polymerase A(I) large subunit 409 e-112
gi|6324917|ref|NP_014986.1| RNA polymerase I subunit alpha; larg... 409 e-112
gi|50286997|ref|XP_445928.1| unnamed protein product [Candida gl... 408 e-112
gi|50555960|ref|XP_505388.1| hypothetical protein [Yarrowia lipo... 406 e-111
gi|46116898|ref|XP_384467.1| hypothetical protein FG04291.1 [Gib... 405 e-111
gi|31127032|gb|AAF26647.2| RNA polymerase II largest subunit [Cy... 403 e-110
gi|38232323|gb|AAR14997.1| RNA polymerase II largest subunit [Ne... 403 e-110
gi|50419249|ref|XP_458147.1| unnamed protein product [Debaryomyc... 401 e-110
gi|39591254|emb|CAE73307.1| Hypothetical protein CBG20734 [Caeno... 399 e-109
gi|18032797|gb|AAL56846.1| RNA polymerase I large subunit [Xenop... 398 e-109
gi|17537243|ref|NP_496872.1| RNA polymerase I (2N962) [Caenorhab... 397 e-108
gi|25288405|pir||A88355 protein Y48E1A.1 [imported] - Caenorhabd... 397 e-108
gi|28850444|gb|AAO53208.1| similar to alpha (190 kDa) subunit of... 396 e-108
gi|20094123|ref|NP_613970.1| DNA-directed RNA polymerase larges... 395 e-108
gi|38102690|gb|EAA49500.1| hypothetical protein MG01158.4 [Magna... 394 e-108
gi|2133435|pir||S73104 DNA-directed RNA polymerase (EC 2.7.7.6) ... 394 e-107
gi|44889981|emb|CAF32099.1| DNA-directed RNA polymerase i, putat... 393 e-107
gi|15230368|ref|NP_191325.1| DNA-directed RNA polymerase family ... 391 e-107
gi|49071908|ref|XP_400243.1| hypothetical protein UM02628.1 [Ust... 385 e-105
gi|31240221|ref|XP_320524.1| ENSANGP00000008667 [Anopheles gambi... 384 e-104
gi|26350055|dbj|BAC38667.1| unnamed protein product [Mus musculus] 382 e-104
gi|29165712|gb|AAH49190.1| Rpo1-4 protein [Mus musculus] 382 e-104
gi|34328146|ref|NP_033114.2| RNA polymerase 1-4; RNA polymerase ... 381 e-104
gi|3914808|sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I la... 380 e-103
gi|50258580|gb|EAL21267.1| hypothetical protein CNBD3210 [Crypto... 377 e-102
gi|18307453|emb|CAD21513.1| probable DNA-directed RNA polymerase... 376 e-102
gi|7661686|ref|NP_056240.1| polymerase (RNA) I polypeptide A, 19... 375 e-102
gi|13929086|ref|NP_113960.1| RNA polymerase 1-4; RNA polymerase ... 375 e-102
gi|32415195|ref|XP_328077.1| hypothetical protein [Neurospora cr... 367 1e-99
gi|20159749|gb|AAM12029.1| RNA polymerase III subunit RPC155-A [... 337 2e-90
gi|45501363|gb|AAH67295.1| Unknown (protein for MGC:75453) [Homo... 331 8e-89
gi|19074219|ref|NP_584825.1| DNA-DIRECTED RNA POLYMERASE I [Ence... 330 2e-88
gi|49256401|gb|AAH73968.1| Unknown (protein for MGC:87965) [Homo... 325 4e-87
gi|1945435|gb|AAC49712.1| RNA polymerase II largest subunit [Spi... 321 1e-85
gi|31127046|gb|AAC03136.3| RNA polymerase II largest subunit [Li... 321 1e-85
gi|47156939|gb|AAT12325.1| DNA-directed RNA polymerase I largest... 313 2e-83
gi|9628206|ref|NP_042792.1| RNA polymerase subunit 1 [African sw... 313 2e-83
gi|23491122|gb|EAA22733.1| RNA polymerase A/beta'/A'' subunit, p... 312 4e-83
gi|13274170|emb|CAC33866.1| RNA polymerase II largest subunit [S... 310 2e-82
gi|38232433|gb|AAR15052.1| RNA polymerase II largest subunit [Pe... 307 1e-81
gi|38232237|gb|AAR14954.1| RNA polymerase II largest subunit [Ar... 306 3e-81
gi|102080|pir||A34374 DNA-directed RNA polymerase (EC 2.7.7.6) I... 305 8e-81
gi|133316|sp|P16355|RPA1_TRYBB DNA-DIRECTED RNA POLYMERASE I LAR... 305 8e-81
gi|16805266|ref|NP_473294.1| DNA-directed RNA polymerase II, put... 304 1e-80
gi|133328|sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II la... 304 1e-80
gi|15669231|ref|NP_248036.1| DNA-directed RNA polymerase, subuni... 304 1e-80
gi|2127864|pir||A64430 DNA-directed RNA polymerase (EC 2.7.7.6) ... 304 1e-80
gi|20159759|gb|AAM12032.1| RNA polymerase III subunit RPC155-D [... 301 9e-80
gi|47214109|emb|CAG00674.1| unnamed protein product [Tetraodon n... 291 7e-77
gi|50747376|ref|XP_420851.1| PREDICTED: similar to RNA polymeras... 288 1e-75
gi|13812345|ref|NP_113463.1| DNA-directed RNA polymerase I chain... 286 4e-75
gi|38091170|emb|CAE46439.1| RNA polymerase II largest subunit [C... 285 7e-75
gi|755032|gb|AAA92868.1| DNA-dependent RNA polymerase largest su... 280 2e-73
gi|13358404|ref|NP_078624.1| DNA-depenent RNA polymerase largest... 280 3e-73
gi|38091172|emb|CAE46440.1| RNA polymerase II largest subunit [G... 280 3e-73
gi|6624241|dbj|BAA88485.1| RNA polymerase II largest subunit [Le... 274 2e-71
gi|13274156|emb|CAC33868.1| RNA polymerase II largest subunit [T... 273 3e-71
gi|48843725|ref|YP_025105.1| DNA-dependent RNA polymerase larges... 267 2e-69
gi|38091160|emb|CAE46434.1| RNA polymerase II largest subunit [A... 266 3e-69
gi|133325|sp|P28364|RPB1_EUPOC DNA-directed RNA polymerase II la... 265 9e-69
gi|6624239|dbj|BAA88484.1| RNA polymerase II largest subunit [Ep... 264 2e-68
gi|38091158|emb|CAE46433.1| RNA polymerase II largest subunit [A... 263 2e-68
gi|38091164|emb|CAE46436.1| RNA polymerase II largest subunit [H... 263 3e-68
gi|38091168|emb|CAE46438.1| RNA polymerase II largest subunit [G... 262 5e-68
gi|38091162|emb|CAE46435.1| RNA polymerase II largest subunit [R... 257 2e-66
gi|38091166|emb|CAE46437.1| RNA polymerase II largest subunit [A... 256 2e-66
gi|1778038|gb|AAB40622.1| RNA polymerase II large subunit 254 9e-66
gi|48869087|gb|AAT47141.1| RNA polymerase 2 [Prodontorhabditis w... 253 3e-65
gi|1916659|gb|AAB51210.1| large subunit RNA polymerase II [Cruzn... 251 1e-64
gi|1916663|gb|AAB51211.1| large subunit RNA polymerase II [Mesor... 250 2e-64
gi|50346876|gb|AAT75145.1| RNA polymerase 2 [Rhabditella axei] 250 2e-64
gi|1916670|gb|AAB51213.1| large subunit RNA polymerase II [unide... 249 5e-64
gi|1495275|emb|CAA61514.1| DNA-directed RNA polymerase [Bacillus... 246 4e-63
gi|30260294|ref|NP_842671.1| DNA-directed RNA polymerase, beta' ... 245 6e-63
gi|47570396|ref|ZP_00241036.1| DNA-directed RNA polymerase, beta... 245 6e-63
gi|21398065|ref|NP_654050.1| RNA_pol_A, RNA polymerase alpha sub... 245 6e-63
gi|49479285|ref|YP_034455.1| DNA-directed RNA polymerase, beta' ... 245 6e-63
gi|30018373|ref|NP_830004.1| DNA-directed RNA polymerase beta' c... 245 6e-63
gi|42779184|ref|NP_976431.1| DNA-directed RNA polymerase, beta' ... 245 6e-63
gi|13274172|emb|CAC33862.1| RNA polymerase II largest subunit [P... 244 1e-62
gi|31127020|gb|AAF26631.2| RNA polymerase II largest subunit [En... 244 2e-62
gi|49482773|ref|YP_039997.1| DNA-directed RNA polymerase beta' c... 243 4e-62
gi|38232319|gb|AAR14995.1| RNA polymerase II largest subunit [Me... 242 5e-62
gi|15923533|ref|NP_371067.1| RNA polymerase beta-prime chain [St... 242 5e-62
gi|38232379|gb|AAR15025.1| RNA polymerase II largest subunit [Th... 241 1e-61
gi|31127012|gb|AAF26625.2| RNA polymerase II largest subunit [Ca... 241 1e-61
gi|26352734|dbj|BAC39997.1| unnamed protein product [Mus musculus] 240 2e-61
gi|34597072|gb|AAQ77111.1| RNA polymerase II largest subunit [Li... 239 4e-61
gi|31127054|gb|AAC03142.2| RNA polymerase II largest subunit [Tr... 239 5e-61
gi|50346883|gb|AAT75148.1| RNA polymerase 2 [Caenorhabditis sp. ... 238 7e-61
gi|2507345|sp|P47770|RPOC_STAAU DNA-directed RNA polymerase beta... 238 9e-61
gi|7470964|pir||T10908 DNA-directed RNA polymerase (EC 2.7.7.6) ... 238 9e-61
gi|38232209|gb|AAR14940.1| RNA polymerase II largest subunit [Ac... 238 1e-60
gi|14591327|ref|NP_143405.1| DNA-directed RNA polymerase subunit... 236 3e-60
gi|31127040|gb|AAF26661.2| RNA polymerase II largest subunit [To... 236 3e-60
gi|18977934|ref|NP_579291.1| DNA-directed RNA polymerase subunit... 235 6e-60
gi|38232235|gb|AAR14953.1| RNA polymerase II largest subunit [Ar... 235 8e-60
gi|34597078|gb|AAQ77114.1| RNA polymerase II largest subunit [Li... 234 1e-59
gi|38232229|gb|AAR14950.1| RNA polymerase II largest subunit [Ar... 234 1e-59
gi|38232339|gb|AAR15005.1| RNA polymerase II largest subunit [Or... 234 1e-59
gi|31127026|gb|AAF26640.2| RNA polymerase II largest subunit [Ma... 234 1e-59
gi|38232333|gb|AAR15002.1| RNA polymerase II largest subunit [Ni... 234 2e-59
gi|158321|gb|AAA28863.1| large subunit of RNA polymerase II 234 2e-59
gi|14520832|ref|NP_126307.1| DNA-directed RNA polymerase, subuni... 233 2e-59
gi|31127028|gb|AAF26643.2| RNA polymerase II largest subunit [Ni... 233 2e-59
gi|38232303|gb|AAR14987.1| RNA polymerase II largest subunit [Ly... 233 3e-59
gi|38232349|gb|AAR15010.1| RNA polymerase II largest subunit [Po... 233 4e-59
gi|38232279|gb|AAR14975.1| RNA polymerase II largest subunit [Le... 232 5e-59
gi|31127044|gb|AAF26666.2| RNA polymerase II largest subunit [Mi... 232 5e-59
gi|38232373|gb|AAR15022.1| RNA polymerase II largest subunit [Sk... 232 5e-59
gi|13274168|emb|CAC33860.1| RNA polymerase II largest subunit [H... 231 9e-59
gi|401020|sp|P29158|RPA2_THECE DNA-directed RNA polymerase subun... 231 9e-59
gi|38232259|gb|AAR14965.1| RNA polymerase II largest subunit [Eu... 231 1e-58
gi|38232241|gb|AAR14956.1| RNA polymerase II largest subunit [Ch... 231 1e-58
gi|38232365|gb|AAR15018.1| RNA polymerase II largest subunit [Rh... 231 1e-58
gi|38232223|gb|AAR14947.1| RNA polymerase II largest subunit [Al... 230 2e-58
gi|38232273|gb|AAR14972.1| RNA polymerase II largest subunit [Ha... 229 3e-58
gi|38232265|gb|AAR14968.1| RNA polymerase II largest subunit [Fo... 229 6e-58
gi|31127016|gb|AAF26628.2| RNA polymerase II largest subunit [Eu... 228 7e-58
gi|31127022|gb|AAF26634.2| RNA polymerase II largest subunit [Hu... 228 9e-58
gi|15903818|ref|NP_359368.1| DNA-dependent RNA polymerase [Strep... 227 2e-57
gi|38232285|gb|AAR14978.1| RNA polymerase II largest subunit [Li... 227 2e-57
gi|38232217|gb|AAR14944.1| RNA polymerase II largest subunit [An... 227 2e-57
gi|38232355|gb|AAR15013.1| RNA polymerase II largest subunit [Pa... 226 3e-57
gi|38232389|gb|AAR15030.1| RNA polymerase II largest subunit [Tr... 226 4e-57
gi|861468|gb|AAB33907.1| DNA-depenent RNA polymerase largest sub... 226 4e-57
gi|3914837|sp|P96177|RPOC_WEIHE DNA-directed RNA polymerase beta... 226 5e-57
gi|15078888|ref|NP_149639.1| 176R [Invertebrate iridescent virus... 226 5e-57
gi|15901783|ref|NP_346387.1| DNA-directed RNA polymerase, beta' ... 226 5e-57
gi|31127018|gb|AAF26632.2| RNA polymerase II largest subunit [Ha... 224 1e-56
gi|20808667|ref|NP_623838.1| DNA-directed RNA polymerase beta su... 224 2e-56
gi|46113102|ref|ZP_00182317.2| COG0086: DNA-directed RNA polymer... 222 7e-56
gi|7514790|pir||T09645 DNA-directed RNA polymerase (EC 2.7.7.6) ... 222 7e-56
gi|2500614|sp|P77882|RPOC_LISGR DNA-directed RNA polymerase beta... 222 7e-56
gi|31127014|gb|AAF26627.2| RNA polymerase II largest subunit [Eu... 221 1e-55
gi|38232397|gb|AAR15034.1| RNA polymerase II largest subunit [St... 221 1e-55
gi|31127050|gb|AAC03139.2| RNA polymerase II largest subunit [Pe... 221 1e-55
gi|27467225|ref|NP_763862.1| RNA polymerase beta-prime chain [St... 220 2e-55
gi|15612690|ref|NP_240993.1| DNA-directed RNA polymerase beta' s... 220 3e-55
gi|33416841|gb|AAH55500.1| Polr1a protein [Danio rerio] 219 4e-55
gi|12045199|ref|NP_073010.1| DNA-directed RNA polymerase, subuni... 219 6e-55
gi|26553532|ref|NP_757466.1| DNA-directed RNA polymerase subunit... 218 1e-54
gi|18311394|ref|NP_563328.1| RNA polymerase beta' subunit [Clost... 218 1e-54
gi|23112361|ref|ZP_00097853.1| COG0086: DNA-directed RNA polymer... 216 3e-54
gi|43621|emb|CAA40431.1| A subunit [Halococcus morrhuae] 216 4e-54
gi|133399|sp|P15349|RPA1_HALMO DNA-directed RNA polymerase subun... 216 4e-54
gi|23097568|ref|NP_691034.1| DNA-directed RNA polymerase beta' s... 215 6e-54
gi|50365414|ref|YP_053839.1| DNA-directed RNA polymerase beta su... 215 8e-54
gi|48825087|ref|ZP_00286381.1| COG0086: DNA-directed RNA polymer... 214 1e-53
gi|16077176|ref|NP_387989.1| RNA polymerase (beta' subunit) [Bac... 213 2e-53
gi|2507344|sp|P37871|RPOC_BACSU DNA-directed RNA polymerase beta... 213 2e-53
gi|15896391|ref|NP_349740.1| DNA-dependent RNA polymerase beta' ... 213 4e-53
gi|1495299|emb|CAA61515.1| DNA-directed RNA polymerase [Brochoth... 212 5e-53
gi|2500612|sp|P77839|RPOC_BROTH DNA-directed RNA polymerase beta... 212 5e-53
gi|11499473|ref|NP_070714.1| DNA-directed RNA polymerase, subuni... 212 7e-53
gi|38603407|dbj|BAD02849.1| DNA-dependent RNA polymerase II larg... 211 9e-53
gi|38603391|dbj|BAD02841.1| DNA-dependent RNA polymerase II larg... 211 9e-53
gi|28212180|ref|NP_783124.1| DNA-directed RNA polymerase beta ch... 210 2e-52
gi|41018005|sp|Q890N5|RPOC_CLOTE DNA-directed RNA polymerase bet... 210 2e-52
gi|28564494|dbj|BAC57604.1| DNA-dependent RNA polymerase II larg... 210 3e-52
gi|29377681|ref|NP_816835.1| DNA-directed RNA polymerase, beta-p... 208 1e-51
gi|38603399|dbj|BAD02845.1| DNA-dependent RNA polymerase II larg... 208 1e-51
gi|28564492|dbj|BAC57603.1| DNA-dependent RNA polymerase II larg... 207 1e-51
gi|41018127|sp|Q9CEN7|RPOC_LACLA DNA-directed RNA polymerase bet... 207 2e-51
gi|15673781|ref|NP_267956.1| DNA-directed RNA polymerase beta' c... 207 2e-51
gi|38603409|dbj|BAD02850.1| DNA-dependent RNA polymerase II larg... 207 2e-51
gi|50591318|ref|ZP_00332634.1| COG0086: DNA-directed RNA polymer... 206 4e-51
gi|29831458|ref|NP_826092.1| putative RNA polymerase beta prime ... 206 4e-51
gi|20090126|ref|NP_616201.1| DNA-directed RNA polymerase, subuni... 206 5e-51
gi|28564500|dbj|BAC57607.1| DNA-dependent RNA polymerase II larg... 204 1e-50
gi|7514789|pir||T09641 DNA-directed RNA polymerase (EC 2.7.7.6) ... 204 1e-50
gi|28564508|dbj|BAC57611.1| DNA-dependent RNA polymerase II larg... 204 2e-50
gi|548826|sp|Q03586|RPA2_THEAC DNA-directed RNA polymerase subun... 204 2e-50
gi|16081521|ref|NP_393872.1| probable DNA-directed RNA polymeras... 204 2e-50
gi|41719519|ref|ZP_00148405.1| COG0086: DNA-directed RNA polymer... 203 3e-50
gi|16799363|ref|NP_469631.1| RNA polymerase (beta' subunit) [Lis... 203 3e-50
gi|47096520|ref|ZP_00234111.1| DNA-directed RNA polymerase, beta... 203 3e-50
gi|16802305|ref|NP_463790.1| RNA polymerase (beta' subunit) [Lis... 203 3e-50
gi|46906496|ref|YP_012885.1| DNA-directed RNA polymerase, beta' ... 203 3e-50
gi|47091393|ref|ZP_00229190.1| DNA-directed RNA polymerase, beta... 203 3e-50
gi|1173130|sp|P14247|RPA2_METVA DNA-directed RNA polymerase subu... 202 4e-50
gi|21228372|ref|NP_634294.1| DNA-directed RNA polymerase subunit... 202 4e-50
gi|38603397|dbj|BAD02844.1| DNA-dependent RNA polymerase II larg... 202 4e-50
gi|48840816|ref|ZP_00297742.1| COG0086: DNA-directed RNA polymer... 201 1e-49
gi|38603405|dbj|BAD02848.1| DNA-dependent RNA polymerase II larg... 201 1e-49
gi|15805936|ref|NP_294635.1| DNA-directed RNA polymerase, beta` ... 201 1e-49
gi|15643225|ref|NP_228269.1| DNA-directed RNA polymerase, beta' ... 201 2e-49
gi|30249985|ref|NP_842055.1| RNA polymerase, alpha subunit [Nitr... 201 2e-49
gi|48852483|ref|ZP_00306669.1| COG0086: DNA-directed RNA polymer... 200 2e-49
gi|38603403|dbj|BAD02847.1| DNA-dependent RNA polymerase II larg... 200 3e-49
gi|950303|gb|AAB59112.1| RNA polymerase beta' subunit 199 4e-49
gi|28564502|dbj|BAC57608.1| DNA-dependent RNA polymerase II larg... 199 4e-49
gi|21842235|gb|AAM77743.1| RNA polymerase II subunit Rpb1 [Giard... 199 4e-49
gi|22536345|ref|NP_687196.1| DNA-directed RNA polymerase beta' s... 199 6e-49
gi|28564504|dbj|BAC57609.1| DNA-dependent RNA polymerase II larg... 197 2e-48
gi|48477329|ref|YP_023035.1| DNA-directed RNA polymerase subunit... 197 2e-48
gi|14601673|ref|NP_148214.1| DNA-directed RNA polymerase subunit... 197 2e-48
gi|15607808|ref|NP_215182.1| rpoC [Mycobacterium tuberculosis H3... 196 3e-48
gi|15840071|ref|NP_335108.1| DNA-directed RNA polymerase, beta-p... 196 3e-48
gi|38603393|dbj|BAD02842.1| DNA-dependent RNA polymerase II larg... 196 5e-48
gi|15679065|ref|NP_276182.1| DNA-dependent RNA polymerase, subun... 195 7e-48
gi|48871263|ref|ZP_00323979.1| COG0086: DNA-directed RNA polymer... 195 7e-48
gi|42524380|ref|NP_969760.1| DNA-directed RNA polymerase, beta' ... 195 9e-48
gi|45358927|ref|NP_988484.1| RNA polymerase, A/beta'/A' subunit ... 194 1e-47
gi|28564490|dbj|BAC57602.1| DNA-dependent RNA polymerase II larg... 194 2e-47
gi|28564498|dbj|BAC57606.1| DNA-dependent RNA polymerase II larg... 194 2e-47
gi|19745278|ref|NP_606414.1| RNA polymerase beta' subunit [Strep... 192 4e-47
gi|133430|sp|P15353|RPA2_HALMO DNA-directed RNA polymerase subun... 192 6e-47
gi|15674322|ref|NP_268496.1| DNA-dependent RNA polymerase, B' su... 192 6e-47
gi|38603395|dbj|BAD02843.1| DNA-dependent RNA polymerase II larg... 192 8e-47
gi|24380332|ref|NP_722287.1| DNA-dependent RNA polymerase, beta'... 191 1e-46
gi|41018033|sp|Q8DS47|RPOC_STRMU DNA-directed RNA polymerase bet... 191 1e-46
gi|7470962|pir||T10432 DNA-directed RNA polymerase (EC 2.7.7.6) ... 191 2e-46
gi|2500616|sp|P77917|RPOC_PEDAC DNA-directed RNA polymerase beta... 191 2e-46
gi|28564510|dbj|BAC57612.1| DNA-dependent RNA polymerase II larg... 191 2e-46
gi|13542011|ref|NP_111699.1| DNA-directed RNA polymerase, subuni... 190 3e-46
gi|20978714|sp|Q979F5|RPA2_THEVO DNA-directed RNA polymerase sub... 190 3e-46
gi|133433|sp|P09847|RPA2_METTW DNA-directed RNA polymerase subun... 190 3e-46
gi|27904546|ref|NP_777672.1| DNA-directed RNA polymerase beta' c... 189 5e-46
gi|28564512|dbj|BAC57613.1| DNA-dependent RNA polymerase II larg... 189 5e-46
gi|41410229|ref|NP_963065.1| RpoC [Mycobacterium avium subsp. pa... 188 8e-46
gi|15791387|ref|NP_281211.1| DNA-directed RNA polymerase subunit... 188 8e-46
gi|28564496|dbj|BAC57605.1| DNA-dependent RNA polymerase II larg... 188 1e-45
gi|42561523|ref|NP_975974.1| DNA-directed RNA polymerase beta' c... 186 4e-45
gi|15828009|ref|NP_302272.1| [beta]' subunit of RNA polymerase [... 185 9e-45
gi|419676|pir||S31146 DNA-directed RNA polymerase (EC 2.7.7.6) b... 185 9e-45
gi|18312087|ref|NP_558754.1| DNA-directed RNA polymerase subunit... 185 9e-45
gi|32491272|ref|NP_871526.1| rpoC [Wigglesworthia glossinidia en... 184 1e-44
gi|15669232|ref|NP_248037.1| DNA-directed RNA polymerase, subuni... 183 3e-44
gi|46364498|ref|ZP_00227112.1| COG0086: DNA-directed RNA polymer... 183 4e-44
gi|28564506|dbj|BAC57610.1| DNA-dependent RNA polymerase II larg... 182 5e-44
gi|28894989|ref|NP_801339.1| putative DNA-dependent RNA polymera... 182 6e-44
gi|29840448|ref|NP_829554.1| DNA-directed RNA polymerase, beta` ... 182 8e-44
gi|37524449|ref|NP_927793.1| RNA polymerase, beta prime subunit ... 181 2e-43
gi|48728517|ref|ZP_00262275.1| COG0086: DNA-directed RNA polymer... 181 2e-43
gi|21672997|ref|NP_661062.1| DNA-directed RNA polymerase, beta-p... 181 2e-43
gi|23104433|ref|ZP_00090897.1| COG0086: DNA-directed RNA polymer... 181 2e-43
gi|15640356|ref|NP_229983.1| DNA-directed RNA polymerase, beta' ... 180 2e-43
gi|38603401|dbj|BAD02846.1| DNA-dependent RNA polymerase II larg... 180 3e-43
gi|46188864|ref|ZP_00123798.2| COG0086: DNA-directed RNA polymer... 180 3e-43
gi|28867848|ref|NP_790467.1| DNA-directed RNA polymerase, beta' ... 180 3e-43
gi|23003767|ref|ZP_00047416.1| COG0086: DNA-directed RNA polymer... 179 4e-43
gi|26987189|ref|NP_742614.1| DNA-directed RNA polymerase, beta' ... 179 5e-43
gi|28899695|ref|NP_799300.1| DNA-directed RNA polymerase, beta' ... 178 9e-43
gi|16123883|ref|NP_407196.1| DNA-directed RNA polymerase beta' c... 178 1e-42
gi|50119184|ref|YP_048351.1| DNA-directed RNA polymerase beta' s... 178 1e-42
gi|48831540|ref|ZP_00288600.1| COG0086: DNA-directed RNA polymer... 178 1e-42
gi|22124400|ref|NP_667823.1| RNA polymerase, beta prime subunit ... 178 1e-42
gi|27364617|ref|NP_760145.1| DNA-directed RNA polymerase, beta' ... 177 2e-42
gi|48844250|ref|ZP_00298573.1| COG0086: DNA-directed RNA polymer... 177 2e-42
gi|223424|prf||0805230A rpoC gene EcoRID fragment 177 3e-42
gi|147730|gb|AAA24586.1| RNA polymerase (rpoC) 177 3e-42
gi|42518423|ref|NP_964353.1| DNA-directed RNA polymerase beta' c... 177 3e-42
gi|15804578|ref|NP_290619.1| RNA polymerase, beta prime subunit ... 177 3e-42
gi|223476|prf||0808241A polymerase beta',RNA 177 3e-42
gi|22774033|gb|AAN07183.1| RNA polymerase beta prime subunit/int... 177 3e-42
gi|31417307|gb|AAH14399.1| RPC155 protein [Homo sapiens] 176 4e-42
gi|46914940|emb|CAG21715.1| putative RNA polymerase, beta prime ... 176 4e-42
gi|26250759|ref|NP_756799.1| DNA-directed RNA polymerase beta' c... 176 6e-42
gi|33519999|ref|NP_878831.1| DNA-directed RNA polymerase, beta-p... 176 6e-42
gi|409789|gb|AAC43086.1| DNA-directed RNA polymerase, beta'-subunit 175 7e-42
gi|21909612|ref|NP_663880.1| putative DNA-dependent RNA polymera... 175 7e-42
gi|48860583|ref|ZP_00314497.1| COG0086: DNA-directed RNA polymer... 175 7e-42
gi|50083580|ref|YP_045090.1| DNA-directed RNA polymerase beta' c... 175 1e-41
gi|23613117|ref|NP_703439.1| RNA polymerase I [Plasmodium falcip... 174 1e-41
gi|7494158|pir||T28156 DNA-directed RNA polymerase homolog - mal... 174 1e-41
gi|29246199|gb|EAA37805.1| GLP_228_16828_21153 [Giardia lamblia ... 174 2e-41
gi|28188321|gb|AAL78753.1| RpoC [Baumannia cicadellinicola] 174 2e-41
gi|224026|prf||1008145A polymerase beta',RNA 174 2e-41
gi|16762299|ref|NP_457916.1| DNA-directed RNA polymerase, beta'-... 173 4e-41
gi|3914833|sp|P94892|RPOC_LEUME DNA-directed RNA polymerase beta... 172 5e-41
gi|23024870|ref|ZP_00064061.1| COG0086: DNA-directed RNA polymer... 172 5e-41
gi|29653584|ref|NP_819276.1| DNA-directed RNA polymerase beta' s... 172 6e-41
gi|15616662|ref|NP_239874.1| DNA-directed RNA polymerase beta' c... 172 6e-41
gi|38233061|ref|NP_938828.1| DNA-directed RNA polymerase beta' c... 171 1e-40
gi|41018066|sp|Q8KTH8|RPOC_XANOR DNA-directed RNA polymerase bet... 171 1e-40
gi|23491222|gb|EAA22812.1| RNA polymerase A/beta'/A'' subunit, p... 170 2e-40
gi|50876007|emb|CAG35847.1| probable DNA-directed RNA polymerase... 170 2e-40
gi|15835617|ref|NP_300141.1| RNA polymerase beta' [Chlamydophila... 170 3e-40
gi|15618006|ref|NP_224290.1| RNA Polymerase Beta' [Chlamydophila... 170 3e-40
gi|21230358|ref|NP_636275.1| RNA polymerase beta' subunit [Xanth... 170 3e-40
gi|16752963|ref|NP_445235.1| DNA-directed RNA polymerase, beta` ... 170 3e-40
gi|48855327|ref|ZP_00309486.1| COG0086: DNA-directed RNA polymer... 169 5e-40
gi|15892105|ref|NP_359819.1| DNA-directed RNA polymerase beta pr... 169 7e-40
gi|42453336|ref|ZP_00153243.1| hypothetical protein Rick017401 [... 168 9e-40
gi|15604017|ref|NP_220532.1| DNA-DIRECTED RNA POLYMERASE BETA PR... 168 9e-40
gi|3914834|sp|P94899|RPOC_LEUPS DNA-directed RNA polymerase beta... 168 1e-39
gi|1838974|emb|CAA65078.1| DNA-dependent RNA polymerase [Leucono... 167 2e-39
gi|34580864|ref|ZP_00142344.1| DNA-directed RNA polymerase beta ... 167 2e-39
gi|41615213|ref|NP_963711.1| NEQ427 [Nanoarchaeum equitans Kin4-... 167 3e-39
gi|33946161|gb|AAQ55744.1| RNA polymerase II largest subunit [Pe... 166 6e-39
gi|12085054|ref|NP_073456.1| 71R protein [Yaba-like disease viru... 164 2e-38
gi|1839027|emb|CAA65249.1| DNA-dependent RNA polymerase [Strepto... 161 1e-37
gi|30696792|ref|NP_176490.2| DNA-directed RNA polymerase alpha s... 160 2e-37
gi|133314|sp|P28363|RPA1_EUPOC DNA-DIRECTED RNA POLYMERASE I LAR... 158 1e-36
gi|14193381|gb|AAK55945.1| RNA polymerase beta-prime subunit [Ca... 157 2e-36
gi|34597090|gb|AAQ77120.1| RNA polymerase II largest subunit [Na... 155 6e-36
gi|40556120|ref|NP_955205.1| CNPV182 RNA polymerase subunit RPO1... 155 6e-36
gi|14193384|gb|AAK55947.1| RNA polymerase beta-prime subunit [Ca... 155 6e-36
gi|19881433|ref|NP_612250.1| ORF028L [infectious spleen and kidn... 154 1e-35
gi|13508254|ref|NP_110203.1| DNA-directed RNA polymerase beta' c... 154 2e-35
gi|25027054|ref|NP_737108.1| putative DNA-directed RNA polymeras... 154 2e-35
gi|5688954|dbj|BAA82753.1| largest subunit of the DNA-dependent ... 153 3e-35
gi|31544418|ref|NP_852996.1| RpoC [Mycoplasma gallisepticum R] >... 153 4e-35
gi|14193399|gb|AAK55957.1| RNA polymerase beta-prime subunit [Ca... 153 4e-35
gi|14193393|gb|AAK55953.1| RNA polymerase beta-prime subunit [Ca... 153 4e-35
gi|41179068|ref|NP_958425.1| chloroplast RNA polymerase beta' ch... 152 5e-35
gi|19551732|ref|NP_599734.1| DNA-directed RNA polymerase beta' s... 152 7e-35
>gi|25145495|ref|NP_501127.2| RNA Polymerase, Class III (C), rna
polymerase (rpc-1) [Caenorhabditis elegans]
gi|21913089|gb|AAA83341.2| Rna polymerase, class iii (c) protein 1
[Caenorhabditis elegans]
Length = 1400
Score = 2732 bits (7082), Expect = 0.0
Identities = 1376/1400 (98%), Positives = 1376/1400 (98%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK
Sbjct: 1 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 60
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MGV TDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP
Sbjct: 61 MGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 120
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA 3664
EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA
Sbjct: 121 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA 180
Query: 3663 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE 3484
SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE
Sbjct: 181 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE 240
Query: 3483 KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK 3304
KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK
Sbjct: 241 KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK 300
Query: 3303 TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS 3124
TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS
Sbjct: 301 TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS 360
Query: 3123 GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK 2944
GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK
Sbjct: 361 GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK 420
Query: 2943 KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR 2764
KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR
Sbjct: 421 KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR 480
Query: 2763 TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD 2584
TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD
Sbjct: 481 TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD 540
Query: 2583 FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIEL 2404
FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTK PVELWTGKQLIEL
Sbjct: 541 FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIEL 600
Query: 2403 IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF 2224
IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF
Sbjct: 601 IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF 660
Query: 2223 YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC 2044
YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC
Sbjct: 661 YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC 720
Query: 2043 SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG 1864
SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG
Sbjct: 721 SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG 780
Query: 1863 SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP 1684
SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP
Sbjct: 781 SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP 840
Query: 1683 TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE 1504
TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE
Sbjct: 841 TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE 900
Query: 1503 DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF 1324
DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF
Sbjct: 901 DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF 960
Query: 1323 ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT 1144
ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT
Sbjct: 961 ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT 1020
Query: 1143 KTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV 964
KTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV
Sbjct: 1021 KTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV 1080
Query: 963 PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 784
PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF
Sbjct: 1081 PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 1140
Query: 783 LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK 604
LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK
Sbjct: 1141 LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK 1200
Query: 603 TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT 424
TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT
Sbjct: 1201 TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT 1260
Query: 423 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 244
NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN
Sbjct: 1261 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 1320
Query: 243 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 64
GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY
Sbjct: 1321 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 1380
Query: 63 DKKAVLKQNSPIFERLNVTL 4
DKKAVLKQNSPIFERLNVTL
Sbjct: 1381 DKKAVLKQNSPIFERLNVTL 1400
>gi|7497334|pir||T34157 hypothetical protein C42D4.8 - Caenorhabditis
elegans
Length = 1388
Score = 2702 bits (7005), Expect = 0.0
Identities = 1364/1400 (97%), Positives = 1364/1400 (97%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK
Sbjct: 1 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 60
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MGV TDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP
Sbjct: 61 MGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 120
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA 3664
EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA
Sbjct: 121 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA 180
Query: 3663 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE 3484
SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE
Sbjct: 181 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE 240
Query: 3483 KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK 3304
KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK
Sbjct: 241 KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK 300
Query: 3303 TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS 3124
TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS
Sbjct: 301 TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS 360
Query: 3123 GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK 2944
GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK
Sbjct: 361 GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK 420
Query: 2943 KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR 2764
KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR
Sbjct: 421 KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR 480
Query: 2763 TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD 2584
TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD
Sbjct: 481 TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD 540
Query: 2583 FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIEL 2404
FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTK PVELWTGKQLIEL
Sbjct: 541 FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIEL 600
Query: 2403 IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF 2224
IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF
Sbjct: 601 IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF 660
Query: 2223 YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC 2044
YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC
Sbjct: 661 YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC 720
Query: 2043 SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG 1864
SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG
Sbjct: 721 SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG 780
Query: 1863 SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP 1684
SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP
Sbjct: 781 SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP 840
Query: 1683 TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE 1504
TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE
Sbjct: 841 TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE 900
Query: 1503 DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF 1324
DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF
Sbjct: 901 DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF 960
Query: 1323 ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT 1144
ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT
Sbjct: 961 ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT 1020
Query: 1143 KTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV 964
KTQLCSFIELCYYKVARAITEP GEPSTQMTLKTFHFAGVASMNITQGV
Sbjct: 1021 KTQLCSFIELCYYKVARAITEP------------GEPSTQMTLKTFHFAGVASMNITQGV 1068
Query: 963 PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 784
PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF
Sbjct: 1069 PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 1128
Query: 783 LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK 604
LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK
Sbjct: 1129 LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK 1188
Query: 603 TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT 424
TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT
Sbjct: 1189 TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT 1248
Query: 423 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 244
NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN
Sbjct: 1249 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 1308
Query: 243 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 64
GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY
Sbjct: 1309 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 1368
Query: 63 DKKAVLKQNSPIFERLNVTL 4
DKKAVLKQNSPIFERLNVTL
Sbjct: 1369 DKKAVLKQNSPIFERLNVTL 1388
>gi|39593525|emb|CAE61817.1| Hypothetical protein CBG05787
[Caenorhabditis briggsae]
Length = 1402
Score = 2567 bits (6653), Expect = 0.0
Identities = 1276/1402 (91%), Positives = 1339/1402 (95%), Gaps = 2/1402 (0%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDV GKLQPA+YGPLDP+
Sbjct: 1 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVGGKLQPASYGPLDPR 60
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MGV TDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP
Sbjct: 61 MGVSTKTGICATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 120
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA 3664
EQHRVFSRQVMNPN+DYLHRKALHKRIVAACKK STC+ CGLKNGTVKKAVGAVLKIAFA
Sbjct: 121 EQHRVFSRQVMNPNIDYLHRKALHKRIVAACKKSSTCTQCGLKNGTVKKAVGAVLKIAFA 180
Query: 3663 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE 3484
SPV DELGK+ T+F++NQE+GDHV+KMKFTLLNPLFVQKLF+NIKE DIPVLMVRSGEE
Sbjct: 181 SPVPADELGKYQTVFNANQEIGDHVKKMKFTLLNPLFVQKLFANIKEADIPVLMVRSGEE 240
Query: 3483 KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK 3304
KHPNDLLLTRMPVPPVCIRPSVVSEVK+GTTEDDVTMKLMEIMLTNDVLKKHKRDGAP+K
Sbjct: 241 KHPNDLLLTRMPVPPVCIRPSVVSEVKSGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPAK 300
Query: 3303 TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS 3124
TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS
Sbjct: 301 TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS 360
Query: 3123 GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK 2944
GRTVISPDPNLRIDQVGVP+HVAMTLTFPEIVNASNI+KMR+L++NGSDVHPGANYLV+K
Sbjct: 361 GRTVISPDPNLRIDQVGVPVHVAMTLTFPEIVNASNIDKMRKLIVNGSDVHPGANYLVDK 420
Query: 2943 KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR 2764
KTG+KKLLKYG R+ELAKNLR+GDT+ERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR
Sbjct: 421 KTGHKKLLKYGNREELAKNLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR 480
Query: 2763 TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD 2584
TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD
Sbjct: 481 TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD 540
Query: 2583 FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIEL 2404
FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQ+K PVELWTGKQLIEL
Sbjct: 541 FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQSKIRIPPPAIRRPVELWTGKQLIEL 600
Query: 2403 IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF 2224
IIRPDKGS VSLNLTAKNKSY+GNLELCSKDSYVIIRNSVLLAG LDKSLLGSSSKVNIF
Sbjct: 601 IIRPDKGSQVSLNLTAKNKSYSGNLELCSKDSYVIIRNSVLLAGVLDKSLLGSSSKVNIF 660
Query: 2223 YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC 2044
YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSE+LL+EKGQLVDNGY KC
Sbjct: 661 YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSERLLQEKGQLVDNGYEKC 720
Query: 2043 SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG 1864
+QYI+ELEEGKLKAQPGCTEEETLE+IILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG
Sbjct: 721 AQYIRELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG 780
Query: 1863 SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP 1684
SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP
Sbjct: 781 SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP 840
Query: 1683 TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE 1504
TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE
Sbjct: 841 TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE 900
Query: 1503 DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF 1324
DGLDP+MMEAKDGSVVDFTHVLEHAKNIQT KE+PIP +KLDEVLK E+QK+FK KYVHF
Sbjct: 901 DGLDPSMMEAKDGSVVDFTHVLEHAKNIQTKKEKPIPAEKLDEVLKTEVQKQFKEKYVHF 960
Query: 1323 ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT 1144
AD++ +Y+ QTEIKKSKKWQ + HC HE+A+ KT+E C C NL+ Y+TSLL NSCLT
Sbjct: 961 ADQMKDYLLQTEIKKSKKWQGIQTHCAEHESANAKTREECAKCTNLDTYRTSLLKNSCLT 1020
Query: 1143 KTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV 964
++QL SFI+LCYYK+ARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV
Sbjct: 1021 RSQLLSFIQLCYYKIARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV 1080
Query: 963 PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 784
PRIKEIINAVKTISTPIITA+LLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF
Sbjct: 1081 PRIKEIINAVKTISTPIITASLLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 1140
Query: 783 LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK 604
LLVKLNSKRIRLLQLEV +ESISYAI TSKVCP MRGCKI++HGKTMMAIRPPSTSKLSK
Sbjct: 1141 LLVKLNSKRIRLLQLEVSLESISYAIVTSKVCPMMRGCKIISHGKTMMAIRPPSTSKLSK 1200
Query: 603 TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT 424
TMTMQ+LKYSL NVVVKGI SVNRCVIHADEKKGD YSLLVEGTDFRSVLSSVGVDP+KT
Sbjct: 1201 TMTMQMLKYSLGNVVVKGISSVNRCVIHADEKKGDCYSLLVEGTDFRSVLSSVGVDPKKT 1260
Query: 423 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 244
NFNNALVVA+VLGIEAAR+CIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN
Sbjct: 1261 NFNNALVVAEVLGIEAARTCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 1320
Query: 243 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 64
GLVKMKDSVLLLASFEKTMDHLFEAAFFSQ+DVIHGVSECIIMGTPMTVGTGTFKLMQKY
Sbjct: 1321 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQKDVIHGVSECIIMGTPMTVGTGTFKLMQKY 1380
Query: 63 DKKAVLKQNSPIFER--LNVTL 4
+KKA+LK+N+PIFER L +TL
Sbjct: 1381 EKKALLKKNTPIFERPELAITL 1402
>gi|50749362|ref|XP_421603.1| PREDICTED: similar to polymerase (RNA)
III (DNA directed) (155kD) [Gallus gallus]
Length = 1390
Score = 1468 bits (3801), Expect = 0.0
Identities = 791/1405 (56%), Positives = 975/1405 (69%), Gaps = 11/1405 (0%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M KEQFRE+D A K+ + F E MRQ AH+ + + LY + P YG LD +
Sbjct: 1 MVKEQFRESDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQ-DNHHAPLQYGVLDHR 59
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MG DC+GH+GY DL++P FH+G+FK I +LQ ICK C I+L+
Sbjct: 60 MGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSV 119
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF- 3667
E+ + F + P L YL ++ L K++ C+K +TC +CG NGTVKK +LKI
Sbjct: 120 EEKKQFLDYLKRPGLTYLQKRGLKKKVSEKCRKKNTCPYCGAFNGTVKKC--GLLKIIHE 177
Query: 3666 --------ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIP 3511
P+ L F T N+EV + + + L NPL V LF I DIP
Sbjct: 178 KYKTNKKVVDPIVSTFLQSFETAIEHNKEVEPLLGRAQENL-NPLVVLNLFKRIPAEDIP 236
Query: 3510 VLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKK 3331
+L++ E P+DL+LTR+ VPP+CIRPSVVS++K+GT EDD+TMKL EI+ NDV+KK
Sbjct: 237 LLLMNP-EAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKK 295
Query: 3330 HKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGN 3151
H+ GA ++ + E W+ LQ+QCALYINSE+SG+P +M PK+ R F QRLKGKQGRFRGN
Sbjct: 296 HRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGN 355
Query: 3150 LCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVH 2971
L GKRVDFSGRTVISPDPNLRID+V VPIHVA LTFPE VN +NI MR+LV NG DVH
Sbjct: 356 LSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVH 415
Query: 2970 PGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMS 2791
PGAN++ ++ T K+ LKYG R+++A+ L+ GD +ERHL D D+VLFNRQPSLHK+SIM+
Sbjct: 416 PGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMA 475
Query: 2790 HRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 2611
H A+V P RTFRFNEC CTPYNADFDGDEMNLHLPQT EAKAEA LM K NL+TPR+G
Sbjct: 476 HIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 2610 EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVEL 2431
EPL+AAIQDF+TG YLLT KDTF RA+ + A+++ +K K PV L
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK-IKVRLPPPAILKPVTL 594
Query: 2430 WTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLE-LCSKDSYVIIRNSVLLAGCLDKSL 2254
WTGKQ+ LI++P V NL K K Y G E LC DSYV I+NS L++G +DK
Sbjct: 595 WTGKQVFSLILKPSDDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGT 654
Query: 2253 LGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKG 2074
LGS SK NIFY+L+RD+G+ A DAM RLAR+APV+LSNRGFSIGIGDV P + LL+ K
Sbjct: 655 LGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 2073 QLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKY 1894
+L+ GY KC +YI+ L GKL+ QPGCT EETLE++IL+ELS IRDHAG CLR L K
Sbjct: 715 ELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 1893 NAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFV 1714
N+PL MA+CGSKGSFINISQMIACVGQQAISG R PDGFE RSLPHFE+ K P AKGFV
Sbjct: 775 NSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFV 834
Query: 1713 ANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSV 1534
ANSFYSGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVK LEDLC+ YD TVRSS
Sbjct: 835 ANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSST 894
Query: 1533 GDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQ 1354
GD+I+F++G DGLDPA ME KD ++F VL++ + + + +P + K + VL +E
Sbjct: 895 GDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEP-ALSKNELVLTSESI 952
Query: 1353 KKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYK 1174
K K +++ D + EIKK K + K KT++ I N
Sbjct: 953 MK-KNEFLCCRDSFLQ-----EIKKFIKGVSEKIK---------KTRDKYGINDNGTTEP 997
Query: 1173 TSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAG 994
L +T TQL F+E C K RA EPG+AVGA+ A SIGEP TQMTLKTFHFAG
Sbjct: 998 RVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 993 VASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYI 814
VASMNIT GVPRIKEIINA K ISTPIITA L D AR VK RIEKT LGEI +YI
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYI 1117
Query: 813 EEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAI 634
EEV+LPDD F+LVKL+ +RIRLL+LEV E++ Y+I SK+ +++ + HG+ ++ +
Sbjct: 1118 EEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICISKL--RVKPGDVAVHGEAVVCV 1175
Query: 633 RPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKG-DFYSLLVEGTDFRSV 457
P SK S +Q LK L VVV+GIP V+R VIH DE+ G + Y LLVEG + R+V
Sbjct: 1176 TPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAV 1235
Query: 456 LSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMT 277
+++ GV KT+ NN V LGIEAAR+ IINEI TM HG+ +DRRHVMLL+D+MT
Sbjct: 1236 MATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMT 1295
Query: 276 YRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTV 97
Y+GEVLGITR GL KMK+SVL+LASFEKT DHLF+AA+F Q+D + GVSECIIMG PM +
Sbjct: 1296 YKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355
Query: 96 GTGTFKLMQKYDKKAVLKQNSPIFE 22
GTG FKL+ K DK++ + IF+
Sbjct: 1356 GTGLFKLLHKADKESTPPRRPLIFD 1380
>gi|39725938|ref|NP_008986.2| polymerase (RNA) III (DNA directed)
(155kD) [Homo sapiens]
gi|26996801|gb|AAH41089.1| Polymerase (RNA) III (DNA directed)
(155kD) [Homo sapiens]
Length = 1390
Score = 1466 bits (3794), Expect = 0.0
Identities = 785/1393 (56%), Positives = 972/1393 (69%), Gaps = 11/1393 (0%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M KEQFRE D A K+ + F E MRQ AH+ + + LY + + P YG LD +
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQ-DNQHAPLLYGVLDHR 59
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MG DC+GH+GY DL++P FH+G+F+ I +LQ ICK C I+L+
Sbjct: 60 MGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQ 119
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF- 3667
E+ + F + P L YL ++ L K+I C+K + C HCG NGTVKK +LKI
Sbjct: 120 EEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKC--GLLKIIHE 177
Query: 3666 --------ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIP 3511
P+ + L F T N+EV + + + L NPL V LF I D+P
Sbjct: 178 KYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENL-NPLVVLNLFKRIPAEDVP 236
Query: 3510 VLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKK 3331
+L++ E P+DL+LTR+ VPP+CIRPSVVS++K+GT EDD+TMKL EI+ NDV+KK
Sbjct: 237 LLLMNP-EAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKK 295
Query: 3330 HKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGN 3151
H+ GA ++ + E W+ LQ+QCALYINSE+SG+P +M PK+ R F QRLKGKQGRFRGN
Sbjct: 296 HRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGN 355
Query: 3150 LCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVH 2971
L GKRVDFSGRTVISPDPNLRID+V VP+HVA LTFPE VN +NI +R+LV NG +VH
Sbjct: 356 LSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVH 415
Query: 2970 PGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMS 2791
PGAN++ ++ T K+ LKYG R+++A+ L+ GD +ERHL D DVVLFNRQPSLHK+SIM+
Sbjct: 416 PGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 2790 HRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 2611
H A+V P RTFRFNEC CTPYNADFDGDEMNLHLPQT EAKAEA LM K NL+TPR+G
Sbjct: 476 HLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 2610 EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVEL 2431
EPL+AAIQDF+TG YLLT KDTF RA+ + A+++ +K K PV L
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK-IKVRLPPPTILKPVTL 594
Query: 2430 WTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLE-LCSKDSYVIIRNSVLLAGCLDKSL 2254
WTGKQ+ +I+RP + V NL K K Y G E LC+ DSYV I+NS L++G +DK
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 2253 LGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKG 2074
LGS SK NIFY+L+RD+G++ A DAM RLAR+APV+LSNRGFSIGIGDV P + LL+ K
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 2073 QLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKY 1894
+L++ GY KC +YI+ L GKL+ QPGCT EETLE++IL+ELS IRDHAG CLR L K
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 1893 NAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFV 1714
N+PLTMA+CGSKGSFINISQMIACVGQQAISG R PDGFE RSLPHFE+ K P AKGFV
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFV 834
Query: 1713 ANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSV 1534
ANSFYSGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVK LEDLC+ YD TVRSS
Sbjct: 835 ANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSST 894
Query: 1533 GDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQ 1354
GD+I+F++G DGLDPA ME KD ++F VL++ K + +P + K + +L E
Sbjct: 895 GDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEP-ALSKNELILTTESI 952
Query: 1353 KKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYK 1174
K K +++ D + EIKK K + K KT++ I N
Sbjct: 953 MK-KSEFLCCQDSFLQ-----EIKKFIKGVSEKIK---------KTRDKYGINDNGTTEP 997
Query: 1173 TSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAG 994
L +T TQ+ F+E C K RA EPG+AVGA+ A SIGEP TQMTLKTFHFAG
Sbjct: 998 RVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 993 VASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYI 814
VASMNIT GVPRIKEIINA K ISTPIITA L D AR VK RIEKT LGEI +YI
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYI 1117
Query: 813 EEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAI 634
EEV+LPDD F+LVKL+ +RIRLL+LEV E++ Y+I TSK+ +++ + HG+ ++ +
Sbjct: 1118 EEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKL--RVKPGDVAVHGEAVVCV 1175
Query: 633 RPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKG-DFYSLLVEGTDFRSV 457
P SK S +Q LK L VVV+GIP V+R VIH DE+ G + Y LLVEG + R+V
Sbjct: 1176 TPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAV 1235
Query: 456 LSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMT 277
+++ GV +T NN V LGIEAAR+ IINEI TM HG+ +DRRHVMLL+D+MT
Sbjct: 1236 MATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMT 1295
Query: 276 YRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTV 97
Y+GEVLGITR GL KMK+SVL+LASFEKT DHLF+AA+F Q+D + GVSECIIMG PM +
Sbjct: 1296 YKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355
Query: 96 GTGTFKLMQKYDK 58
GTG FKL+ K D+
Sbjct: 1356 GTGLFKLLHKADR 1368
>gi|3122765|sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III
largest subunit (RPC155) (RPC1)
gi|2460208|gb|AAB86536.1| RNA polymerase III largest subunit [Homo
sapiens]
Length = 1391
Score = 1457 bits (3773), Expect = 0.0
Identities = 783/1394 (56%), Positives = 969/1394 (69%), Gaps = 12/1394 (0%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M KEQFRE D A K + F E MRQ AH+ + + LY + + P YG LD +
Sbjct: 1 MVKEQFRETDVAKKTSHICFGMKSPEEMRQQAHIQVVSKNLYSQ-DNQHAPLLYGVLDHR 59
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MG DC+GH+GY DL++P FH+G+F+ I +LQ ICK C I+L+
Sbjct: 60 MGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQ 119
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF- 3667
E+ + F + P L YL ++ L K+I C+K + C HCG NGTVKK +LKI
Sbjct: 120 EEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKC--GLLKIIHE 177
Query: 3666 --------ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIP 3511
P+ + L F T N+EV + + + L NPL V LF I D+P
Sbjct: 178 KYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENL-NPLVVLNLFKRIPAEDVP 236
Query: 3510 VLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKK 3331
+L++ E P+DL+LTR+ VPP+C RPSVVS++K+GT EDD+TMKL EI+ NDV+KK
Sbjct: 237 LLLMNP-EAGKPSDLILTRLLVPPLCFRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKK 295
Query: 3330 HKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGN 3151
H+ GA ++ + E W+ LQ+QCALYINSE+SG+P +M PK+ R F QRLKGKQGRFRGN
Sbjct: 296 HRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGN 355
Query: 3150 LCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVH 2971
L GKRVDFSGRTVISPDPNLRID+V VP+HVA LTFPE VN +NI +R+LV NG +VH
Sbjct: 356 LSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVH 415
Query: 2970 PGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMS 2791
PGAN++ ++ T K+ LKYG R+++A+ L+ GD +ERHL D DVVLFNRQPSLHK+SIM+
Sbjct: 416 PGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 2790 HRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 2611
H A+V P RTFRFNEC CTPYNADFDGDEMNLHLPQT EAKAEA LM K NL+TPR+G
Sbjct: 476 HLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 2610 EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVEL 2431
EPL+AAIQDF+TG YLLT KDTF RA+ + A+++ +K K PV L
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK-IKVRLPPPTILKPVTL 594
Query: 2430 WTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLE-LCSKDSYVIIRNSVLLAGCLDKSL 2254
WTGKQ+ +I+RP + V NL K K Y G E LC+ DSYV I+NS L++G +DK
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 2253 LGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKG 2074
LGS SK NIFY+L+RD+G++ A DAM RLAR+APV+LSNRGFSIGIGDV P + LL+ K
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 2073 QLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKY 1894
+L++ GY KC +YI+ L GKL+ QPGCT EETLE++IL+ELS IRDHAG CLR L K
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 1893 NAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFV 1714
N+PLTMA+CGSKGSFINISQMIACVGQQAISG R PDGFE RSLPHFE+ K P AKGFV
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFV 834
Query: 1713 ANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSV 1534
ANSFYSGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVK LEDLC+ YD TVRSS
Sbjct: 835 ANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSST 894
Query: 1533 GDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQ 1354
GD+I+F++G DGLDPA ME KD ++F VL++ K + +P + K + +L E
Sbjct: 895 GDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEP-ALSKNELILTTESI 952
Query: 1353 KKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYK 1174
K K +++ D + EIKK K + K KT++ I N
Sbjct: 953 MK-KSEFLCCQDSFLQ-----EIKKFIKGVSEKIK---------KTRDKYGINDNGTTEP 997
Query: 1173 TSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAG 994
L +T TQ+ F+E C K RA EPG+AVGA+ A SIGEP TQMTLKTFHF G
Sbjct: 998 RVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFGG 1057
Query: 993 VASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYI 814
VASMNIT GVPRIKEIINA K ISTPIITA L D AR VK RIEKT LGEI +YI
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYI 1117
Query: 813 EEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAI 634
EEV+LPDD F+LVKL+ +RIRLL+LEV E++ Y+I TSK+ +++ + HG+ ++ +
Sbjct: 1118 EEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKL--RVKPGDVAVHGEAVVCV 1175
Query: 633 RPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKG-DFYSLLVEGTDFRSV 457
P SK S +Q LK L VVV+GIP V+R VIH DE+ G + Y LLVEG + R+V
Sbjct: 1176 TPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAV 1235
Query: 456 LSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDA-HGIGLDRRHVMLLADVM 280
+++ GV +T NN V LGIEAAR+ IINEI TM HG+ +DRRHVMLL+D+M
Sbjct: 1236 MATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLM 1295
Query: 279 TYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMT 100
TY+GEVLGITR GL KMK+SVL+LASFEKT DHLF+AA+F Q+D + GVSECIIMG PM
Sbjct: 1296 TYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMN 1355
Query: 99 VGTGTFKLMQKYDK 58
+GTG FKL+ K D+
Sbjct: 1356 IGTGLFKLLHKADR 1369
>gi|34876886|ref|XP_341389.1| similar to polymerase (RNA) III (DNA
directed) (155kD) [Rattus norvegicus]
Length = 1388
Score = 1420 bits (3675), Expect = 0.0
Identities = 770/1392 (55%), Positives = 954/1392 (68%), Gaps = 34/1392 (2%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M KEQFRE D A K+ + F E MRQ AH+ + + LY + P YG LD +
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQ-DNNHAPLLYGVLDHR 59
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MG DC+GH+GY DL++P FH+G+F+ I +LQ ICK C I+L+
Sbjct: 60 MGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQ 119
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF- 3667
E+ + F + P L YL ++ L K+I C+K STC +CG NGTVKK +LKI
Sbjct: 120 EEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKC--GLLKIIHE 177
Query: 3666 --------ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIP 3511
P+ + L F T N+EV + + + L NPL V LF I D+P
Sbjct: 178 KYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENL-NPLVVLNLFKRIPAEDVP 236
Query: 3510 VLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKK 3331
+L++ E P+DL+LTR+ VPP+CIRPSVVS++K+GT EDD+TMKL EI+ NDV+KK
Sbjct: 237 LLLMNP-EAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKK 295
Query: 3330 HKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGN 3151
H+ GA ++ + E W+ LQ+QCALYINSE+SG+P +M PK+ R F QRLKGKQGRFRGN
Sbjct: 296 HRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGN 355
Query: 3150 LCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVH 2971
L GKRVDFSGRTVISPDPNLRID+V VP+HVA LTFPE VN +NI +R+LV NG DVH
Sbjct: 356 LSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVH 415
Query: 2970 PGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMS 2791
PGAN++ ++ K+ LKYG R+++A+ L+ GD +ERHL D DVVLFNRQPSLHK+SIM+
Sbjct: 416 PGANFIQQRHMQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 2790 HRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 2611
H AKV P RTFRFNEC CTPYNADFDGDEMNLHLPQT EAKAEA LM K NL+TPR+G
Sbjct: 476 HLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 2610 EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVEL 2431
EPL+AAIQDF+TG YLLT KDTF RA+ + A+++ +K K PV L
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK-IKVRLPPPTILKPVTL 594
Query: 2430 WTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLE-LCSKDSYVIIRNSVLLAGCLDKSL 2254
WTGKQ+ +I+RP + V NL K K Y G E LC+ DSYV I+NS L+ G +DK
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCTNDSYVTIQNSELMCGSMDKGT 654
Query: 2253 LGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKG 2074
LGS SK NIFY+L+RD+G++ A DAM RLAR+APV+LSNRGFSIGIGDV P + LL+ K
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Query: 2073 QLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKY 1894
+L++ GY KC +YI+ L GKL+ QPGCT EETLE++IL+ELS IRDHAG CLR L K
Sbjct: 715 ELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKS 774
Query: 1893 NAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFV 1714
N+PLTMA+CGSKGSFINISQMIACVGQQAISG R PDGFE RSLPHFE+ K P AKGFV
Sbjct: 775 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFV 834
Query: 1713 ANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSV 1534
ANSFYSGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVK LEDLC+ YD TVRSS
Sbjct: 835 ANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSST 894
Query: 1533 GDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQT------------TKEQPIPV 1390
GD+I+F++G DGLDPA ME KD ++F VL++ K T E+ +
Sbjct: 895 GDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAHITPCSSDTQAVYPCQSERALSK 953
Query: 1389 DKLDEVLKAEIQK--------KFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHE 1234
++L +A ++K F + F +SE I +T K NG +
Sbjct: 954 NELTLTTEAIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKTRDKYGIN-DNGTTEVLPSQ 1012
Query: 1233 TADLK---TKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVG 1063
TA + T+ + L L +T+TQ+ F+E C K RA EPG+AVG
Sbjct: 1013 TAGRRGSQTERVLTVLSPLSFQPRVLYQLDRITRTQIEKFLETCRDKYMRAQMEPGSAVG 1072
Query: 1062 AIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYD 883
A+ A SIGEP TQMTLKTFHFAGVASMNIT GVPRIKEIINA K ISTPIITA L D
Sbjct: 1073 ALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDMDDD 1132
Query: 882 ESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIA 703
AR VK RIEKT LGEI +YIEEV+LPDD F+LVKL+ +RIRLL+LEV E++ Y+I
Sbjct: 1133 ADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSIC 1192
Query: 702 TSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVI 523
TSK+ +++ + HG+ ++ + P SK S +Q LK L VVV+GIP V+R VI
Sbjct: 1193 TSKL--RVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVI 1250
Query: 522 HADEKKG-DFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEII 346
H DE+ G + + LLVEG + R+V+++ GV +T NN V LGIEAAR+ IINEI
Sbjct: 1251 HIDEQSGKEKFKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQ 1310
Query: 345 ATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAA 166
TM HG+ +DRRHVMLL+D+MTY+GEVLGITR GL KMK+SVL+LASFEKT DHLF+AA
Sbjct: 1311 YTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAA 1370
Query: 165 FFSQRDVIHGVS 130
+F Q+D + G S
Sbjct: 1371 YFGQKDSVCGRS 1382
>gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 1319
Score = 1358 bits (3515), Expect = 0.0
Identities = 746/1386 (53%), Positives = 920/1386 (65%), Gaps = 4/1386 (0%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M KEQFRE D A K+ + F E MRQ AH+ + + LY + P YG LD +
Sbjct: 1 MVKEQFRETDVAQKISHICFGMKSAEQMRQQAHIQVVSKNLYSQ-DTAHTPLAYGVLDHR 59
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCI-CKNCSSILLT 3847
MG DC+GH+GY DL++P FHIG+FK I +LQ K C + +
Sbjct: 60 MGTSEKDRPCLTCGKTLADCLGHYGYLDLELPCFHIGYFKAIIGILQARPVKKCGLLKII 119
Query: 3846 PEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF 3667
E+++ T KK V +
Sbjct: 120 HEKYK-----------------------------------------TTKKVVDPFVSEFL 138
Query: 3666 AS-PVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSG 3490
S ++++ + S QE LNPL V LF I DIP+L++
Sbjct: 139 QSFDIAIEHNKVLEPLLSRAQEN-----------LNPLVVLNLFKRISREDIPLLLMNP- 186
Query: 3489 EEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAP 3310
E P DL+LTR+ VPP+CIRPSVVS++K+GT EDD+TMKL EI+ NDV+KKH+ GA
Sbjct: 187 EAGIPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAK 246
Query: 3309 SKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVD 3130
++ + E W+ LQ+QCALYINSE+SG+P +M PK+ R F QRLKGKQGRFRGNL GKRVD
Sbjct: 247 TQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVD 306
Query: 3129 FSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLV 2950
FSGRTVISPDPNLRID+V VP+HVA LT+PE VN +N+E MR+LV NG +VHPGAN++
Sbjct: 307 FSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQ 366
Query: 2949 EKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMP 2770
+ K+ LKYG R+++A+ LR GD +ERH+ D D+VLFNRQPSLHK+SIM+H A+V P
Sbjct: 367 NRYNQIKRFLKYGNREKIAQELRYGDIVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKP 426
Query: 2769 GRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAI 2590
RTFRFNEC CTPYNADFDGDEMNLHLPQT EAKAEA LM K NL+TPR+GEPL+AAI
Sbjct: 427 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAI 486
Query: 2589 QDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLI 2410
QDF+TG YLLT KDTF R++ + A+++ +K + P+ LWTGKQ+
Sbjct: 487 QDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEK-VRISFPRPAIMKPMALWTGKQIF 545
Query: 2409 ELIIRPDKGSDVSLNLTAKNKSYTGNLE-LCSKDSYVIIRNSVLLAGCLDKSLLGSSSKV 2233
+I++P K V+ NL K K Y G E LC DS+V+I NS L+ G +DK LGS SK
Sbjct: 546 SVILKPSKDCPVNANLKTKGKQYCGKGEDLCHNDSFVVIHNSELMCGSMDKGTLGSGSKN 605
Query: 2232 NIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGY 2053
NIFY+L+RD+G+ A +AM RLAR+APV+LSNRGFSIGIGDV P + LL+ K L+D+GY
Sbjct: 606 NIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKHDLLDDGY 665
Query: 2052 SKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMA 1873
+KC +YI+ L+ GKL+ QPGCT EETLE++ILRELS IRD AG CLR L K N+PLTMA
Sbjct: 666 TKCDEYIEALQTGKLQQQPGCTAEETLEALILRELSVIRDRAGSACLRELDKSNSPLTMA 725
Query: 1872 VCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSG 1693
+CGSKGSFINISQMIACVGQQAISG R PDGFE RSLPHFE+ K P AKGFVANSFYSG
Sbjct: 726 LCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSG 785
Query: 1692 LTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFV 1513
LTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVK LEDLC+ YD TVRSS GD+I+F+
Sbjct: 786 LTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFI 845
Query: 1512 FGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKY 1333
+G DGLDPA ME KD ++F VL++ + + ++P + + + VL A+ K + +
Sbjct: 846 YGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYACSDEPA-LSQNELVLTADAIMK-RTDF 902
Query: 1332 VHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANS 1153
+ D E +T T K + K + KT++ I N + L
Sbjct: 903 LCCRDSFLEELTDTG--SEKYLEEIKKFVKSFSERIKKTRDKYGINDNGTSEPKVLYQLD 960
Query: 1152 CLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNIT 973
+T TQL F+E C K RA EPG+AVGA+ A SIGEP TQMTLKTFHFAGVASMNIT
Sbjct: 961 RITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNIT 1020
Query: 972 QGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPD 793
GVPRIKEIINA K ISTPIITA L D AR VK RIEKT LGEI +YIEEV+LPD
Sbjct: 1021 LGVPRIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1080
Query: 792 DYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSK 613
D F+LVKL+ +RIRLL+LE ++ + P SK
Sbjct: 1081 DCFILVKLSLERIRLLRLEA-----------------------------VVCVSPRENSK 1111
Query: 612 LSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKG-DFYSLLVEGTDFRSVLSSVGVD 436
S +Q LK L VVV+GIP V+R VIH DE+ G + Y LLVEG + R+V+++ GV
Sbjct: 1112 SSMYYVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGRNKYKLLVEGDNMRAVMATHGVK 1171
Query: 435 PRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLG 256
+T NN V LGIEAARS IINEI TM HG+ +DRRHVMLLAD+M+Y+GE+LG
Sbjct: 1172 GSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILG 1231
Query: 255 ITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKL 76
ITR GL KMK+SVL+LASFEKT DHLF+AA+F Q+D + GVSECIIMG PM +GTG FKL
Sbjct: 1232 ITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKL 1291
Query: 75 MQKYDK 58
+ K DK
Sbjct: 1292 LHKADK 1297
>gi|31228896|ref|XP_318130.1| ENSANGP00000017502 [Anopheles gambiae]
gi|30175097|gb|EAA13195.2| ENSANGP00000017502 [Anopheles gambiae str.
PEST]
Length = 1381
Score = 1343 bits (3477), Expect = 0.0
Identities = 732/1409 (51%), Positives = 946/1409 (66%), Gaps = 16/1409 (1%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M KEQFREAD K+ V F + ++Q AH+ + LY + P YG LD +
Sbjct: 3 MPKEQFREADVIKKISHVSFNIDSPQQIQQEAHIHVVAKNLYNQNADRT-PVAYGVLDRR 61
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MGV DCVGHFGY DL +PVFH+G F+ TI +LQ ICK CS ++L
Sbjct: 62 MGVSQKDATCETCKKGLNDCVGHFGYIDLALPVFHVGHFRATITILQSICKVCSRVMLKE 121
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF- 3667
E+ + FS +++NPNL YL +K++H +++ KK + C +C NG VKK G ++KI
Sbjct: 122 EEKKNFSTRLVNPNLSYLAKKSIHSQVLKKAKKNTKCPYCNSLNGPVKKGPG-LMKIVHE 180
Query: 3666 -------ASPVSVDELGKFATMFSSNQEVGDHV--RKMKFTLLNPLFVQKLFSNIKEGDI 3514
+ P+ L + SN+E+ V LN + V LF NI + D+
Sbjct: 181 PFRGKKPSDPLVTHALHEMQAAVESNRELAQTVVGPSSLSKELNAVEVLDLFRNIPKSDV 240
Query: 3513 PVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLK 3334
P+L + S +P DL++TR+ VPPVCIRPSVVSEVKAGTTEDD+TMK EI+L +DV+
Sbjct: 241 PLLGMTS-TYSNPADLIVTRVFVPPVCIRPSVVSEVKAGTTEDDLTMKQSEILLISDVIT 299
Query: 3333 KHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRG 3154
KH + + E W++LQ+ CALY NSE+SG+P + PK+ R QRLKGKQGRFRG
Sbjct: 300 KHMMTNGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRG 359
Query: 3153 NLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDV 2974
NL GKRVDFS RTVISPDPNL I QVGVP VA LTFPE VN++NI +MRQL+ NG++
Sbjct: 360 NLSGKRVDFSARTVISPDPNLMIHQVGVPDRVAKILTFPEKVNSANITRMRQLIRNGTEK 419
Query: 2973 HPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIM 2794
HPGANY+ +K + KK L YG RD++A++L+ GD +ERHL D DVVLFNRQPSLHK+SIM
Sbjct: 420 HPGANYVQQKGSAFKKYLAYGNRDKVAQDLKCGDIVERHLIDGDVVLFNRQPSLHKLSIM 479
Query: 2793 SHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRS 2614
H AKV P RTFRFNECACTPYNADFDGDEMNLHLPQT EA+AEA LM K+NL+TPR+
Sbjct: 480 CHVAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRN 539
Query: 2613 GEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVE 2434
GE L+AA QDFITGGYLLT KD FL +V + AA ++ +
Sbjct: 540 GELLIAATQDFITGGYLLTQKDQFLTLEQVMQLAACMLSGPDSNMVIDLPRPAILKPR-K 598
Query: 2433 LWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSL 2254
LWTGKQ+ LI++P+ S V+ NL K ++YT + ++C KDS+VIIRNS LL G +DK
Sbjct: 599 LWTGKQIFSLILKPNSQSCVNANLYTKGRNYTRDNDMCVKDSWVIIRNSQLLCGAMDKGT 658
Query: 2253 LGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKG 2074
LGS +K IFY+++RD+GE+ A+ +MWRLARMA F+ N GFS GIGDV PS +LL EK
Sbjct: 659 LGSGTKNCIFYVILRDFGEEYAIKSMWRLARMASYFMMNHGFSFGIGDVTPSRKLLEEKQ 718
Query: 2073 QLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKY 1894
+L++NGY KC +YI E+++G L+ QPGCT E+TLE+++L+ELS+IR+ A + C R L
Sbjct: 719 KLLENGYRKCDEYIAEMKKGTLQCQPGCTAEQTLEAVMLKELSSIRELAAKACFRELHPT 778
Query: 1893 NAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFV 1714
N+ L MA GSKGS INISQMIACVGQQAI+G R P+GFE+R+LPHFE+ K P A+GFV
Sbjct: 779 NSALIMAQSGSKGSNINISQMIACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFV 838
Query: 1713 ANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSV 1534
NSFYSGLTPTEFFFHTM GREGLVDTAVKTAETGY+QRRLVKCLEDL YDGTVR+++
Sbjct: 839 QNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAI 898
Query: 1533 GDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQ 1354
G+V+EF +G DGLDP ME K+ VD H +N+ +++ IP+ + +EVL
Sbjct: 899 GEVVEFSYGADGLDPVYMEVKN-KPVDIERQFMHVRNMLPCRDE-IPL-RGEEVLS---- 951
Query: 1353 KKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYK 1174
+G+ + + S + + +K E D K ++C Y+
Sbjct: 952 ---EGERILSTPQFSN--CRQDFRK--------------ECLDFLEKFGRRLCTLQRLYR 992
Query: 1173 TSLLANSCLTKT---QLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFH 1003
+ + +T QL F+ K +A+TEPGTAVGA+AA SIGEP TQMTLKTFH
Sbjct: 993 NGPRVTTEVQRTTAGQLEEFLLQVRNKYNKAVTEPGTAVGALAAQSIGEPGTQMTLKTFH 1052
Query: 1002 FAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEIC 823
FAGVASMNITQGVPRI EIINA K ISTPIITA + + + AR+VKARIEKTTLGEI
Sbjct: 1053 FAGVASMNITQGVPRIVEIINATKAISTPIITAEIENNTNMEFARKVKARIEKTTLGEIS 1112
Query: 822 DYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTM 643
YIEEVY ++ FLL+KL+ RIR+L LEV ++I Y+I TSK+ +++ + +G ++
Sbjct: 1113 SYIEEVYKMNECFLLIKLDLGRIRVLGLEVNADTIRYSICTSKL--KLKQENVEVYGPSL 1170
Query: 642 MAIRPPSTSKLSKTMT--MQILKYSLANVVVKGIPSVNRCVIHADEKKG-DFYSLLVEGT 472
+ IRP S SK S ++ +Q L ++ NVVV G+P V+R VI D+ +G Y L VEG
Sbjct: 1171 IIIRPDS-SKHSHSLNAELQRLITAIPNVVVAGLPQVSRAVIAVDDSRGTPKYRLCVEGC 1229
Query: 471 DFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLL 292
R V+ + GV +T NN L V LGIEAAR+ I+ EI M+ HG+ +D RH+MLL
Sbjct: 1230 GLRDVMGTYGVIGNRTKSNNILEVYQTLGIEAARTTIMTEITEVMEGHGMSVDHRHIMLL 1289
Query: 291 ADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMG 112
+ MT RGEVLGITR+GL KM++SV LASFEKT DHLF+AA++ Q D + GVSE II+G
Sbjct: 1290 SGQMTSRGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDSVDGVSERIILG 1349
Query: 111 TPMTVGTGTFKLMQKYDKKAVLKQNSPIF 25
P ++GTG FKL+ + + + PIF
Sbjct: 1350 MPASIGTGLFKLIHNHSNTQLESISCPIF 1378
>gi|28828616|gb|AAO51219.1| similar to Homo sapiens (Human).
Polymerase (RNA) III (DNA directed) (155kD)
[Dictyostelium discoideum]
Length = 1450
Score = 1216 bits (3145), Expect = 0.0
Identities = 677/1462 (46%), Positives = 926/1462 (63%), Gaps = 76/1462 (5%)
Frame = -1
Query: 4194 EQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGV 4015
E +E D K+ ++F + + + +HV I N +L++ V+ K P YG LD K+G
Sbjct: 3 ELLKEDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRK--PTPYGVLDNKLGT 60
Query: 4014 XXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQH 3835
DCVGHFGY L +PVFHIG+ K + +LQ ICK+CS+ILL E+
Sbjct: 61 SDKQAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKK 120
Query: 3834 RVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFASPV 3655
+ + R++ N +D L RK+L K+I C+K C CG NG +KK+ GA I
Sbjct: 121 QYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKS-GAFKIIHEKYKG 179
Query: 3654 SVDELGKFATMFSS----NQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGE 3487
+ L + ++ N E+ H++K + L NPL LF I DI ++ +
Sbjct: 180 KTESLQDYYALYDDAIKYNPEMKSHIKKAQDDL-NPLVALNLFKKISYQDIEIMNMDPVI 238
Query: 3486 EKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPS 3307
+ P L+LT M VPPV IRPSV + +GT EDD+TMKL EI+ N+ ++ + D A
Sbjct: 239 GR-PERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNV-DRAEM 296
Query: 3306 KTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDF 3127
+ E W++LQ CA+YINS++ GLP M+P +A+R +QRLKGK GRFRGNL GKRVDF
Sbjct: 297 SAIMEDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDF 356
Query: 3126 SGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVE 2947
SGRTVISPDPNL ID+V VP +A+T+T+PE V NIE++++ VING D HPGANY++
Sbjct: 357 SGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIY 416
Query: 2946 KKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPG 2767
G KK LK+G R++ A L++GD +ERH+ D D++LFNRQPSLHK+SIMSH+A+VMP
Sbjct: 417 AD-GVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPW 475
Query: 2766 RTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQ 2587
RT RFNEC CTPYNADFDGDEMN+HLPQT EA+AEA+ LM V NNLITPR+GEPLVAA Q
Sbjct: 476 RTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQ 535
Query: 2586 DFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIE 2407
DF+T YL++ +D F R YRFA + A PVELWTGKQ+ E
Sbjct: 536 DFLTASYLISRRDAFYER---YRFAL-MCTHFADANEHIDLPPPAILKPVELWTGKQIFE 591
Query: 2406 LIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNI 2227
+++RP S V N ++++Y+ NL +C KD YV RNS L+ G +DKS++G +K ++
Sbjct: 592 VLLRPSVKSHVLCNFETRSRTYSKNLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSL 651
Query: 2226 FYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSK 2047
F++LMRD+ A + M RLA++ FL ++GFSIGI D++P+E L R+K ++++ Y K
Sbjct: 652 FHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPDIKPAEDLDRKKREIIETAYKK 711
Query: 2046 CSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVC 1867
C+ ++K+ E G L+ GC+ E+T E+ + + LS IRD G++C+ +L YN+PL M +C
Sbjct: 712 CAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLC 771
Query: 1866 GSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLT 1687
GSKGS INI+QMI CVGQQ ++G R P+GF R+ PHF+ K P++KGFV+NSFY+G+
Sbjct: 772 GSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMI 831
Query: 1686 PTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFG 1507
PTEFFFHTMGGREGLVDTAVKTAETGYMQRRL+K LEDL YD TVR S+G +++F++G
Sbjct: 832 PTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYG 891
Query: 1506 EDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQ----PIPVDKLDE------------ 1375
+DGLDPA MEAKD VDF + K+ + + + P + KL E
Sbjct: 892 DDGLDPAGMEAKD-RPVDFLRAMMSVKSTRQCRNEPEMKPFEIRKLVESIIDSSKFEACT 950
Query: 1374 -VLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHE------------ 1234
+ K EI+ F G +K YI Q I K+++ ++E
Sbjct: 951 DLFKNEIRVFFNGN-----EKTKGYI-QELISLRKQFKLSSFDLNDNEDEIIIEDNSPMD 1004
Query: 1233 ----------------------TADLKTKESCK----------ICKNLEAYKTSLLANSC 1150
T D++ ES K I K E+ + LL
Sbjct: 1005 ISTTTTTTTTTTTNNAVKITNITTDIEMNESNKEENDKIEKERIEKEKESKRLKLLGERF 1064
Query: 1149 -----------LTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFH 1003
+TKTQ+ F+++C K +RA EPGTAVGAI A SIGEP TQMTLKTFH
Sbjct: 1065 ANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTLKTFH 1124
Query: 1002 FAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEIC 823
FAGVASMN+T GVPRIKEIINA K ISTPIITA+L YD AR V RIEKTTLG +
Sbjct: 1125 FAGVASMNVTLGVPRIKEIINAAKNISTPIITASLNCDYDIRSARIVAGRIEKTTLGHVA 1184
Query: 822 DYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTM 643
+I+EV +L +K++ + LQLE+ ++IS +IA++K +++ +I +G
Sbjct: 1185 THIKEVVKRAGCYLSIKIDKNFVDSLQLEINSKTISQSIASTKGL-KLKPEQITTNGDYK 1243
Query: 642 MAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFR 463
+ I PP+ + +Q LK +L V+VKGIP+VNR VI ++K + Y LLVEG D R
Sbjct: 1244 LRIVPPANIREGSLYYLQFLKNNLPAVIVKGIPTVNRVVISKVDEKQERYQLLVEGYDLR 1303
Query: 462 SVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADV 283
+V+++ G+ T N+ + + LGIE AR+ I++EI M +HG+ +D RHVMLLAD+
Sbjct: 1304 AVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADL 1363
Query: 282 MTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPM 103
M+++GE+LGITR G+ KMK+SVL+LASFEKT DHLF+AA ++D I GVSECIIMG +
Sbjct: 1364 MSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVI 1423
Query: 102 TVGTGTFKLMQKYDKKAVLKQN 37
+GTG FKL++K +K + K++
Sbjct: 1424 PLGTGLFKLLRKSNKNNLPKKS 1445
>gi|50309797|ref|XP_454912.1| unnamed protein product [Kluyveromyces
lactis]
gi|49644047|emb|CAG99999.1| unnamed protein product [Kluyveromyces
lactis NRRL Y-1140]
Length = 1457
Score = 1193 bits (3086), Expect = 0.0
Identities = 671/1432 (46%), Positives = 895/1432 (61%), Gaps = 67/1432 (4%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
K+ G+ F+ + + V I L+ D++ G LDP+MGV
Sbjct: 12 KIKGISFSALSAADIVSQSEVEISTRDLF-DLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 3805
C GHFG+ L +PVFH+G+FK TIQ+LQ +CK C ++LL+ E R F ++ P
Sbjct: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRP 130
Query: 3804 NLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVG----AVLKIAF---------A 3664
+D L R + K+I+ CKK C CG NG VKKA A LKI +
Sbjct: 131 GMDNLRRMNILKKILDQCKKQRRCFECGELNGVVKKAAAGSGSAALKIIHDTFRWVGKKS 190
Query: 3663 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE 3484
+P +G + + +N E+ +V++ L NPL V LF IK D +L + S +
Sbjct: 191 APEKEQWIGDWKQVLENNPELERYVKRCMDDL-NPLKVLNLFKQIKPNDCELLGIDSTSK 249
Query: 3483 K-HPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPS 3307
P + +P PPVCIRPSV+ + + EDD+T+KL EI+ T+ ++K G
Sbjct: 250 SGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISI 309
Query: 3306 KTLFETWEHLQIQCALYINSEMSGLPPDMQP------KRAMRAFTQRLKGKQGRFRGNLC 3145
+ E W++LQ+ A+YINS+ + P M P + +R F QRLKGKQGRFRGNL
Sbjct: 310 NNMMEQWDYLQLAVAMYINSD--SVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLS 367
Query: 3144 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 2965
GKRVDFSGRTVISPDPNL ID+V VP VA LT+PE V N K++QLVING VHPG
Sbjct: 368 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPG 427
Query: 2964 ANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHR 2785
ANYL++K ++ L+YG R +LAK L+ GD +ERH++D DVVLFNRQPSLH++SI+SH
Sbjct: 428 ANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 487
Query: 2784 AKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEP 2605
AK+ P RTFR NEC CTPYNADFDGDEMNLH+PQT EA+AEA LM VKNNL+TP+SGEP
Sbjct: 488 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 547
Query: 2604 LVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWT 2425
++AA QDFITG YL++HKD+F RA++ + + + D++ + LWT
Sbjct: 548 IIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHY----LWT 603
Query: 2424 GKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL------ELCSKDSYVIIRNSVLLAGCLD 2263
GKQ+ L+I+P + S V +NL AKNK Y E+ D +V+IR S +L+G +D
Sbjct: 604 GKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMD 663
Query: 2262 KSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLR 2083
KS+LG K ++FY ++RDYG + A AM R+A++ +L NRGFSIGI DV P L +
Sbjct: 664 KSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQ 723
Query: 2082 EKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNL 1903
+K Q+V++ Y+KC + I +GKL+ QPGC EE+TLE+ I LS +R+ G+VC+R L
Sbjct: 724 KKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIREL 783
Query: 1902 SKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAK 1723
NAPL MA CGSKGS +N+SQM+A VGQQ ISG+R PDGF++RSLPHF + KTP++K
Sbjct: 784 DNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSK 843
Query: 1722 GFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVR 1543
GFV NSF+SGL+P EF FH + GREGLVDTAVKTAETGYM RRL+K LEDL YD TVR
Sbjct: 844 GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR 903
Query: 1542 SSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQP--IPVDKLDE-- 1375
+S +++F +G DGLDP ME + V+F HA N+ P +P + E
Sbjct: 904 TSSNGIVQFTYGGDGLDPLDMEG-NAQPVNFNRSWTHANNLTLNDNSPGLLPYQIIAETN 962
Query: 1374 VLKAEIQKKFKGKYVHFADKL-------SEYITQTEIKKS-----KKWQNGKA------- 1252
V+ ++ K K +Y + +L EYI Q + ++S +++ KA
Sbjct: 963 VILQPLENKLK-RYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKALTLASLR 1021
Query: 1251 -HCGNHETADLKTKESCKI--CKNLEAYKTSLLANSC-LTKTQLCSFIELCYYKVARAIT 1084
G E D +E + +N+ A T L C ++K + F+ + K RA
Sbjct: 1022 GERGLKELVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAISKYHRARV 1081
Query: 1083 EPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITA 904
EPGTAVGAI A SIGEP TQMTLKTFHFAGVASMN+T GVPRIKEIINA K ISTPII A
Sbjct: 1082 EPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINA 1141
Query: 903 ALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCME 724
L++ DE AR VK R+EKT L ++ Y++++Y + FL +K++S+ I LQLE+ +E
Sbjct: 1142 VLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIEKLQLELTLE 1201
Query: 723 SISYAIATS-KVCPQMRGCKIVAHGKTMMAIRP--PSTSKLSKTM----------TMQIL 583
I AIA + K+ I+ K +A+ S +S M MQ L
Sbjct: 1202 DIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSISTAMKEPEPNEVFYRMQQL 1261
Query: 582 KYSLANVVVKGIPSVNRCVIH-ADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNAL 406
+ +L ++VVKG ++R VI+ D+ K + LLVEG R V+++ GV KT N+ L
Sbjct: 1262 RRALPHIVVKGFSDISRAVINIRDDGKRE---LLVEGYGLRDVMTTDGVIGSKTKTNHIL 1318
Query: 405 VVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMK 226
V DVLGIEAARSCIINEI TM HG+ +D RH+ LL DVMTY+GEVLGITR GL KM+
Sbjct: 1319 EVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMR 1378
Query: 225 DSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQ 70
DSVL LASFEKT DHLF+AAF+ + D + GVSECII+G M++GTG+FK+++
Sbjct: 1379 DSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVK 1430
>gi|50426995|ref|XP_462102.1| unnamed protein product [Debaryomyces
hansenii]
gi|49657772|emb|CAG90588.1| unnamed protein product [Debaryomyces
hansenii CBS767]
Length = 1457
Score = 1191 bits (3081), Expect = 0.0
Identities = 677/1457 (46%), Positives = 911/1457 (62%), Gaps = 71/1457 (4%)
Frame = -1
Query: 4179 ADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXX 4000
A K +K G++F + + + V + LY+ +G++ P + G LD KMG+
Sbjct: 9 APKCIK--GIEFGALSAKDIIAQSEVEVHTRDLYDLEKGRI-PKDGGALDTKMGISSNAN 65
Query: 3999 XXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSR 3820
C GHFG+ L +PVFH+G+FK TIQ+LQCICKNCS++LL + R F
Sbjct: 66 ECATCHGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQTKRSFLN 125
Query: 3819 QVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVG----AVLKIAF----- 3667
+ P++D L R + K+++ CKK C +C NG VKKA A LKI
Sbjct: 126 DLRRPHIDNLRRMKILKKLLEQCKKQRRCLNCNHVNGVVKKAASGAGPAALKIVHDTFRW 185
Query: 3666 ----ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMV 3499
A+P +F +F N E+ V+++ L NPL V LF I D +L +
Sbjct: 186 IGKKATPEKDLWDKEFDEVFLRNPELEKFVKRIHDDL-NPLKVLNLFKQISPSDCELLGI 244
Query: 3498 RSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRD 3319
S P + +P PPVCIRPSV+ + A + EDD+T+KL EI+ T+ ++K
Sbjct: 245 DSARGGRPEMYIWRYLPAPPVCIRPSVMMD--AQSNEDDLTIKLTEIVWTSSLIKAGIEK 302
Query: 3318 GAPSKTLFETWEHLQIQCALYINSEMSG---LPPD---MQPKRAMRAFTQRLKGKQGRFR 3157
G L E W++LQ+ A+YINS+ + LP + + +R F QRLKGKQGRFR
Sbjct: 303 GISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFR 362
Query: 3156 GNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSD 2977
GNL GKRVDFSGRTVISPDPNL+ID+V VP VA LT+PE N +K+++L+++G +
Sbjct: 363 GNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPN 422
Query: 2976 VHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISI 2797
VHPGANYL+++ K+ L++G R +LAKNL +GD +ERH++D D+VLFNRQPSLH++SI
Sbjct: 423 VHPGANYLLKQNELAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLSI 482
Query: 2796 MSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPR 2617
+SH AK+ P RTFR NEC CTPYNADFDGDEMN+H+PQT EA+AEA LM VKNNL+TP+
Sbjct: 483 LSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTPK 542
Query: 2616 SGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPV 2437
SGEP++AA QDFITG YL++HKD+F RA + + + DA + V
Sbjct: 543 SGEPIIAATQDFITGSYLVSHKDSFFDRASLVQLLCMMSDADIQFDIPPPAIFKP----V 598
Query: 2436 ELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL-----ELCSKDSYVIIRNSVLLAG 2272
LWTGKQ+ L+I+P+K S+V +NL AKNK+YT E+ D +VIIR S +L+G
Sbjct: 599 MLWTGKQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNEMSPNDGFVIIRGSQILSG 658
Query: 2271 CLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQ 2092
+DKS LG K ++FY ++RDYG D A +AM R+A++ +L NRGFSIGI DV P
Sbjct: 659 VMDKSTLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGSD 718
Query: 2091 LLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCL 1912
L ++K +V+ Y KC + I G L+ QPGC EE+TLE+ I LS +R+ G++C+
Sbjct: 719 LKQKKELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVREEVGEICI 778
Query: 1911 RNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTP 1732
L NAPL MA CGSKGS +N+SQM+A VGQQ ISG+R PDGF++RSLPHF + KTP
Sbjct: 779 NELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTP 838
Query: 1731 EAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDG 1552
++KGFV NSF+SGLTP EF FH++ GREGLVDTAVKTAETGYM RRL+K L+DL A YD
Sbjct: 839 QSKGFVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDH 898
Query: 1551 TVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQ----PIPVDK 1384
TVR+S +++F +G DGLDP ME D V+F +HA NI E P + +
Sbjct: 899 TVRNSSNGIVQFTYGGDGLDPFDMEG-DARPVNFVRQWDHAYNITFDIEDKGLLPYQIIE 957
Query: 1383 LDEVLKAEIQKKF-----KGKYVHFADK-LSEYITQTEIKKSKKWQNGKAHCGNHET--A 1228
L + + ++ + GK + D EYI Q + ++ + +Q+ + N T A
Sbjct: 958 LVDSILHPLEDRLVRYDNVGKIIPLEDSDKIEYIDQNDAER-EFYQSIREFTTNKATKLA 1016
Query: 1227 DLKTK--------ESCKICKNLEAYKTSLLANSCLTKTQLCS---FIELCYYKVARAITE 1081
+++ K E + L+ SL+A + L+K S F+E C YK +RA E
Sbjct: 1017 EIREKKMLKPFLTEPAEDFIRLDESDESLVAINQLSKVSANSINKFLEQCIYKYSRAKVE 1076
Query: 1080 PGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAA 901
PGTAVGAI A SIGEP TQMTLKTFHFAGVASMN+T GVPRIKEIINA K ISTPII +
Sbjct: 1077 PGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINSV 1136
Query: 900 LLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMES 721
L++ DE AR VK R+EKT L ++ +IE+VY + +L +K++ I LQLE+ +ES
Sbjct: 1137 LVNDDDEIAARVVKGRVEKTLLEDVAYFIEDVYKNNMAYLSIKIDLNTIEKLQLELNIES 1196
Query: 720 ISYAIATSKVCPQMRGCKIVAHGK----TMMAIRPPSTSKLSKTMT-------------- 595
I+++IA + + G + GK ++ +R P + L K +
Sbjct: 1197 IAHSIANAPKLKILAG-DVSVTGKDRINVLVTLREPKSINLMKNASADYKGTDASIVNSL 1255
Query: 594 ---MQILKYSLANVVVKGIPSVNRCVIHA--DEKKGDFYSLLVEGTDFRSVLSSVGVDPR 430
MQ LK +L + +KG+P ++R VI+ D KK LLVEG + V+S+ GV
Sbjct: 1256 FFRMQHLKRALPRICIKGLPDISRAVINIRDDGKK----ELLVEGYGLKEVMSTDGVVGT 1311
Query: 429 KTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGIT 250
KT+ N+ L V VLGIEAAR+ II EI TM HG+ +D RH+ LL DVMTY+GEVLGIT
Sbjct: 1312 KTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEVLGIT 1371
Query: 249 RNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQ 70
R GL KM+DSVL LASFEKT DHLF+A+F+ + D I GVSECII+G M +GTG FKL+
Sbjct: 1372 RFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTMNIGTGAFKLVN 1431
Query: 69 KYD-KKAVLKQNSPIFE 22
+D K L+ +FE
Sbjct: 1432 SFDVDKKALEMKPTLFE 1448
>gi|50293727|ref|XP_449275.1| unnamed protein product [Candida
glabrata]
gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata
CBS138]
Length = 1459
Score = 1181 bits (3055), Expect = 0.0
Identities = 675/1425 (47%), Positives = 895/1425 (62%), Gaps = 72/1425 (5%)
Frame = -1
Query: 4074 DVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTI 3895
D+E P G LDP+MGV C GHFG+ L +PVFH+G+FK TI
Sbjct: 41 DLENNRSPKEGGALDPRMGVSASSMECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATI 100
Query: 3894 QLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLK 3715
Q+LQ ICK CS+ILL+ + R F ++ P +D L R AL K+++ CKK C HCG
Sbjct: 101 QILQGICKTCSAILLSEQDKRHFLSELRRPGVDNLRRMALLKKVLDQCKKQRRCLHCGAL 160
Query: 3714 NGTVKKAVG----AVLKIAF---------ASPVSVDELGKFATMFSSNQEVGDHVRKMKF 3574
NG VKKA A LKI ++P +G + + S N E+ +V++
Sbjct: 161 NGVVKKAAAGAGTASLKIIHDTFRWVGKKSTPEKDKWIGDWKEVLSHNPELERYVKRATD 220
Query: 3573 TLLNPLFVQKLFSNIKEGDIPVLMV-RSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAG 3397
L NPL LF I D +L + + + P + +P PPVCIRPSV+ +
Sbjct: 221 DL-NPLKTLNLFKQIASEDCELLGIDATNKAGRPETYIWRYIPAPPVCIRPSVMMQDSPA 279
Query: 3396 TTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQ 3217
+ EDD+T+KL EI+ T+ ++K G + E W++LQ+ A+YINS+ + P M
Sbjct: 280 SNEDDLTVKLTEIVWTSSLIKAGIEKGISINNMMEHWDYLQMTVAMYINSD--SINPAML 337
Query: 3216 PK--------RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIH 3061
P + +R F QRLKGKQGRFRGNL GKRVDFSGRTVISPDPNL ID+V VP
Sbjct: 338 PGSSTGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPQL 397
Query: 3060 VAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLR 2881
VA LTFPE V NI+K+RQLV NG +VHPGANYL++K ++ L+YG R +LA NL+
Sbjct: 398 VAKVLTFPEKVTRYNIKKLRQLVQNGPNVHPGANYLLKKNEEARRNLRYGDRQKLANNLQ 457
Query: 2880 MGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEM 2701
GD +ERHL+D DVVLFNRQPSLH++SI+SH AK+ P RTFR NEC CTPYNADFDGDEM
Sbjct: 458 YGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEM 517
Query: 2700 NLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVY 2521
NLH+PQT EA+AEA LM VKNNL+TP+SGEP++AA QDFITG YL++HKD+F +A +
Sbjct: 518 NLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDKASLT 577
Query: 2520 RFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSY 2341
+ + + D S + P LWTGKQ+ L+I+P+K S V +NL AKNK Y
Sbjct: 578 QLLSMMSDGS----LQFDIPPPAIMKPCYLWTGKQVFSLLIKPNKNSPVKINLDAKNKVY 633
Query: 2340 TGNL------ELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDA 2179
E+ D +VI+R S +L+G +DKS+LG K ++FY ++RD+G A A
Sbjct: 634 IPPKQKHYPNEMSQNDGFVIVRGSQILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAASA 693
Query: 2178 MWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQ 1999
M R+A++ +L NRGFSIGI DV P++ L ++K LV+ Y+KC + I +GKL+ Q
Sbjct: 694 MNRMAKLCARYLGNRGFSIGISDVTPADDLKQKKEDLVEIAYAKCDELIDLYNKGKLETQ 753
Query: 1998 PGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACV 1819
PGC EE+TLE+ I LS +R+ G VC+ L NAPL MA CGSKGS +N+SQM+A V
Sbjct: 754 PGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVV 813
Query: 1818 GQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLV 1639
GQQ ISG+R PDGF++RSLPHF + KTP++KGFV NSF+SGL+P EF FH + GREGLV
Sbjct: 814 GQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLV 873
Query: 1638 DTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSV 1459
DTAVKTAETGYM RRL+K LEDL YD TVR+S +++F +G DGLDP ME +
Sbjct: 874 DTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLDPLEMEG-NAQP 932
Query: 1458 VDFTHVLEHAKNI--QTTKEQPIPVD---KLDEVLKAEIQKKFK----GKYVHFA-DKLS 1309
V+F +HA NI T +P + +D +LK ++ + G+ V DKL
Sbjct: 933 VNFNRSWDHAYNITFNNTDRGLLPYEIKKTVDNILKPLEKRLIRYDTLGRPVSAEDDKLD 992
Query: 1308 EYITQTEIKK-----SKKWQNGKAHCGNHETADL-KTKESCKICK--NLEAY-------- 1177
+Y+ Q + ++ +++ KA + A L K++ K+ K LE Y
Sbjct: 993 DYVDQHDSERLFYASLREFMTDKA----KKLAKLRKSRGLPKLIKKSELEGYDPENEHID 1048
Query: 1176 ---KTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTF 1006
+ S+ +T+ + F+E+ K RA EPGTAVGAI A SIGEP TQMTLKTF
Sbjct: 1049 AIVQHSITQLYRITEDAVQKFLEIAISKYHRAKVEPGTAVGAIGAQSIGEPGTQMTLKTF 1108
Query: 1005 HFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEI 826
HFAGVASMN+T GVPRIKEIINA K ISTPII A L++ DE AR VK RIEKT L ++
Sbjct: 1109 HFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNNNDERAARVVKGRIEKTLLSDV 1168
Query: 825 CDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATS-KVCPQMRGCKIVAHGK 649
C YI++VY + +L VK++ I LQLE+ +E I+ AI + K+ Q ++ K
Sbjct: 1169 CYYIQDVYKENMAYLQVKVDLNTIDKLQLELTIEDIAIAITRAPKLKIQTSDVTVLGKDK 1228
Query: 648 TMMAIRPPS-TSKLSKT-----------MTMQILKYSLANVVVKGIPSVNRCVIH-ADEK 508
+ + P SK S T MQ L+ +L +++VKG+ + R VI+ D+
Sbjct: 1229 IAINVLPEGFGSKTSSTSLKEPTENDVFYRMQTLRRALPSIMVKGLNDIARAVINIRDDG 1288
Query: 507 KGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAH 328
K + LLVEG R V+ + GV KT N+ L + +VLGIEAAR+ II EI TM H
Sbjct: 1289 KRE---LLVEGYGLRDVMCTDGVIGAKTATNHVLEIFNVLGIEAARASIIGEIDYTMSNH 1345
Query: 327 GIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRD 148
G+ +D RH+ LL DVMT++GEVLGITR GL KM+DSVL LASFEKT DHLF+AAF+ ++D
Sbjct: 1346 GMSVDPRHIQLLGDVMTFKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKD 1405
Query: 147 VIHGVSECIIMGTPMTVGTGTFKLMQKYD-KKAVLKQNSPIFERL 16
+ GVSECII+G M++GTG+FK+++ D + LK +FE L
Sbjct: 1406 AVEGVSECIILGQTMSIGTGSFKVVKNTDIAEDELKPKRTLFESL 1450
>gi|45190855|ref|NP_985109.1| AER252Cp [Eremothecium gossypii]
gi|44983897|gb|AAS52933.1| AER252Cp [Eremothecium gossypii]
Length = 1459
Score = 1181 bits (3054), Expect = 0.0
Identities = 677/1458 (46%), Positives = 904/1458 (61%), Gaps = 75/1458 (5%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
++ G++F+ + + V IF L+ D+E P G LD +MGV
Sbjct: 12 RISGLEFSALSASDIVAQSEVEIFTRDLF-DLEDGRAPKKGGALDSRMGVSSSQAECSTC 70
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 3805
C GHFG+ L +PVFH+G+FK TIQ+LQ ICKNC+ +LL E R F ++ P
Sbjct: 71 HGTLASCHGHFGHIKLALPVFHVGYFKATIQILQSICKNCAKLLLNEEDKRQFLSELRRP 130
Query: 3804 NLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVG----AVLKIAF---------A 3664
+D L R A K+++ CKK C HCG+ NG VKKA A LKI +
Sbjct: 131 GIDNLRRMATLKKVLDQCKKQRRCLHCGMLNGVVKKAAAGSGSAALKIIHDTFRWVGKKS 190
Query: 3663 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTL--LNPLFVQKLFSNIKEGDIPVLMVRSG 3490
+P +G + + + E+ R MK T+ LNPL LF I D +L + S
Sbjct: 191 APEKDKWIGDWNQVLQHSPELE---RYMKRTMENLNPLKTLNLFKQISPQDCELLGIDST 247
Query: 3489 EEK-HPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGA 3313
+ P + +P PPVCIRPSV+ + + EDD+T+KL EI+ T+ ++K G
Sbjct: 248 VKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGI 307
Query: 3312 PSKTLFETWEHLQIQCALYINSEMSGLPPDMQP-------KRAMRAFTQRLKGKQGRFRG 3154
+ E W++LQ+ A+YINS+ + P + P + +R F QRLKGKQGRFRG
Sbjct: 308 SINNMMEQWDYLQMAVAMYINSD--SVNPALMPGGNGGGKTKPIRGFCQRLKGKQGRFRG 365
Query: 3153 NLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDV 2974
NL GKRVDFSGRTVISPDPNL ID+V VP VA LTFPE V N K++QL++NG++V
Sbjct: 366 NLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVNGANV 425
Query: 2973 HPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIM 2794
HPGANYL++K ++ L+YG R +LAKNL++GD +ERHL+D DVVLFNRQPSLH++SI+
Sbjct: 426 HPGANYLLKKNEEARRNLRYGDRIKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSIL 485
Query: 2793 SHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRS 2614
SH AK+ P RTFR NEC CTPYNADFDGDEMNLH+PQT EA+AEA LM VKNNL+TP+S
Sbjct: 486 SHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 545
Query: 2613 GEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVE 2434
GEP++AA QDFITG YL++HKD+F RA + + + D + +
Sbjct: 546 GEPIIAATQDFITGSYLISHKDSFFDRATFVQMLSMMSDGNLQFDIPPPAIMRPHY---- 601
Query: 2433 LWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL------ELCSKDSYVIIRNSVLLAG 2272
LWTGKQL L+I+P+K S V +NL AKNK Y E+ + D YV+IR S +L+G
Sbjct: 602 LWTGKQLFSLLIKPNKKSPVIINLDAKNKVYIAPKNKAYPNEMSANDGYVVIRGSNILSG 661
Query: 2271 CLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQ 2092
+DKS+LG K ++FY ++RD+G A AM R+A++ +L NRGFSIGI DV P +
Sbjct: 662 VMDKSVLGDGKKHSVFYTILRDFGPQEATQAMNRMAKLCARYLGNRGFSIGISDVTPGVE 721
Query: 2091 LLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCL 1912
L K ++V+ Y+KC + I + GKL+ QPGC EE+TLE+ I LS +R+ G VC+
Sbjct: 722 LKATKEEMVEIAYAKCDELIDLYKRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 781
Query: 1911 RNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTP 1732
R L NAPL MA CGSKGS +N+SQM+A VGQQ ISG+R PDGF++RSLPHF + KTP
Sbjct: 782 RELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 841
Query: 1731 EAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDG 1552
++KGFV NSF+SGL+P EF FH + GREGLVDTAVKTAETGYM RRL+K LEDL YD
Sbjct: 842 QSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDN 901
Query: 1551 TVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQP--IPVDKLD 1378
TVR+S +++F +G DGLDP ME + V+F +HA NI + +P L+
Sbjct: 902 TVRTSSNGIVQFTYGGDGLDPLNMEG-NAKPVNFNRSWDHANNITYNHDDKGMLPYQILE 960
Query: 1377 E--VLKAEIQKKFKGKYVHFADKLSE-------YITQTEIKKS-----KKWQNGKAHCGN 1240
E + ++++ +Y + + L+ YI Q + ++ + + + KA
Sbjct: 961 ETNAILHPLEQQL-SRYDNVGNPLAPGLENEELYIDQHDAEREFYQSLRTYMSEKA---- 1015
Query: 1239 HETADLKTKESCKICKNLEAYKTSL--LANSC-----LTKTQLC--------SFIELCYY 1105
+ AD+ K + A + L L SC + QLC +F+++
Sbjct: 1016 RKLADITKSRGLKELYHAPALELQLMDLDASCPEVDVKSVNQLCKISSKLVRTFLDIAIS 1075
Query: 1104 KVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTI 925
K +A EPGTAVGAI A SIGEP TQMTLKTFHFAGVASMN+T GVPRIKEIINA K I
Sbjct: 1076 KYRKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVI 1135
Query: 924 STPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLL 745
STPII A L++ DE AR VK R+EKT L ++ YI++VY + FL VK++ I L
Sbjct: 1136 STPIINATLVNDDDERAARVVKGRVEKTLLSDVIFYIQDVYRDNMSFLQVKVDLATIEKL 1195
Query: 744 QLEVCMESISYAIATS-KVCPQMRGCKIVAHGKTMMAI-----RPPSTSKLSKT------ 601
QLE+ +E I+ AI ++ K+ IV K + + + S S L+
Sbjct: 1196 QLELTVEDIAIAITSAPKLKISTGDVSIVGRNKININVCNDLDKAKSISTLASEPHENDV 1255
Query: 600 -MTMQILKYSLANVVVKGIPSVNRCVIH-ADEKKGDFYSLLVEGTDFRSVLSSVGVDPRK 427
MQ L+ +L +VVKG+P ++R VI+ D+ K + LLVEG R V+++ GV K
Sbjct: 1256 FFKMQHLRRALPGIVVKGLPDISRAVINIRDDGKRE---LLVEGYGLRDVMTTDGVVGYK 1312
Query: 426 TNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITR 247
T N+ L V DVLGIEAAR+ II+EI TM HG+ +D RH+ LL DVMTY+GEVLGITR
Sbjct: 1313 TKTNHFLEVYDVLGIEAARTSIIDEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITR 1372
Query: 246 NGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQK 67
GL KM+DSVL LASFEKT DHLF+AAF+ ++D + GVSECII+G MT+GTG+FK+++
Sbjct: 1373 FGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMTIGTGSFKVVKG 1432
Query: 66 YD-KKAVLKQNSPIFERL 16
+ LK +FE L
Sbjct: 1433 TNISPDDLKPKPTLFENL 1450
>gi|19112298|ref|NP_595506.1| putative dna-directed rna polymerase iii
largest subunit [Schizosaccharomyces pombe]
gi|9297042|sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III
largest subunit
gi|7492545|pir||T40607 probable dna-directed rna polymerase iii
largest subunit - fission yeast (Schizosaccharomyces
pombe)
gi|4467280|emb|CAB37604.1| SPBC651.08c [Schizosaccharomyces pombe]
Length = 1405
Score = 1180 bits (3052), Expect = 0.0
Identities = 654/1361 (48%), Positives = 863/1361 (63%), Gaps = 17/1361 (1%)
Frame = -1
Query: 4053 PANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCIC 3874
PA +G LD MG DC+GHFGY L +PVFHIG+FK T+ +LQ IC
Sbjct: 47 PAEHGALDLHMGTSNKQINCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNIC 106
Query: 3873 KNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKA 3694
K+CSS+LL+ ++ R F + + P +D L R + KRI CKK CS C G VKKA
Sbjct: 107 KDCSSVLLSDQEKRQFLKDLRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKA 166
Query: 3693 VGAVL---KIAFASPVSVDELG---KFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSN 3532
+ + + DE F + E+ H+ K L NPL V LF
Sbjct: 167 GPLKIIHERFRYVRKSQDDEENFRHSFDEALKTIPELKMHLSKAHDDL-NPLKVLNLFKQ 225
Query: 3531 IKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIML 3352
I D +L + E P +LL +P PPVCIRPSV E TTEDD+T+K+ EI+
Sbjct: 226 ITPVDCELLGM-DPEHGRPENLLWRYVPAPPVCIRPSVAQE--GATTEDDLTVKITEIIW 282
Query: 3351 TNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGK 3172
T+ +++ G P L E WE +Q+ A+YINSEM GL P P + +R F QRLKGK
Sbjct: 283 TSSLIRAALSKGTPISNLMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGK 342
Query: 3171 QGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLV 2992
QGRFRGNL GKRVDFSGRTVISPDPNLRIDQV VP +A LTFPE V N + ++ +
Sbjct: 343 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCI 402
Query: 2991 INGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSL 2812
NG DVHPGANY++++++G K+ L++G R+ +A +L++GD +ERHL DNDVVLFNRQPSL
Sbjct: 403 RNGPDVHPGANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSL 462
Query: 2811 HKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNN 2632
HK+SIM+H KV P RT RFNEC C PYNADFDGDEMNLH+PQT EAK EA ELM +KNN
Sbjct: 463 HKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNN 522
Query: 2631 LITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXX 2452
L++PR+GEP++AA QDFIT YLL+ KDTFL R + ++DAS T
Sbjct: 523 LVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDAS----THIDLPPPA 578
Query: 2451 XXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSY----TGNLELCSKDSYVIIRNSV 2284
P LWTGKQ+ ++++P++ S V +NL AK +S+ + E+C KD Y++IRNS
Sbjct: 579 IIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSE 638
Query: 2283 LLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVR 2104
++AG +DKS++G K ++FY+++RDYG A +A+ RL++M FL NRGFSIGI DV+
Sbjct: 639 IIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQ 698
Query: 2103 PSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAG 1924
P + L +K LV+ Y+ +I + +G L+ QPG +E TLE+ I LS +RD G
Sbjct: 699 PGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVG 758
Query: 1923 QVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERK 1744
++C+ L N+PL MA CGSKGS IN+SQM+ACVGQQ ISG R PDGF++RSLPHF +
Sbjct: 759 EICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKN 818
Query: 1743 KKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCA 1564
K P AKGFV+NSFYSGLTPTEF FH + GREGLVDTAVKTAETGYM RRL+K LEDL +
Sbjct: 819 SKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSS 878
Query: 1563 SYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQP--IPV 1390
+YDGTVRSS DV++FV+G+DGLDP ME DG V+F H+ N+ + +P
Sbjct: 879 AYDGTVRSSNSDVVQFVYGDDGLDPTYMEG-DGQAVEFKRTWIHSVNLNYDRHDSAMLPY 937
Query: 1389 DKLDEVLKAEIQKKFKGKYVH-FADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTK 1213
+ +D V +A KF F + + ++ + K + + E D+
Sbjct: 938 EIIDYVNRALDDPKFLTNCNRDFIETIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDL 997
Query: 1212 ESCKICKNLEAYKTSLLANSC-LTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGE 1036
+ + + K + N +T+ QL SF++ C+ K RA EPGTAVGAI A SIGE
Sbjct: 998 DDMEGDEFAPVAKRKSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGE 1057
Query: 1035 PSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKA 856
P TQMTLKTFHFAGVA+ T GVPRIKEIINA KTISTPIIT L++ DE AR VK
Sbjct: 1058 PGTQMTLKTFHFAGVAAQT-TLGVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKG 1116
Query: 855 RIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMR 676
RIEKT L ++ YIEEVY P +L +++N I LQL++ + I+ AI +
Sbjct: 1117 RIEKTYLKDVTSYIEEVYGPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPS 1176
Query: 675 GCKIVAHGKTMMAIRPPSTSKLSKT---MTMQILKYSLANVVVKGIPSVNRCVIHADEKK 505
V + + + S K S+T +Q K L +VVV GIP++NR VI+ + K
Sbjct: 1177 QQVTVNNTLQQIHVHTSSDGKSSETEVYYRLQTYKRVLPDVVVAGIPTINRSVINQESGK 1236
Query: 504 GDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHG 325
L +EGT ++V+++ G+ KT+ N+ + + DVLGIEAAR II+EI TM HG
Sbjct: 1237 ---IELFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHG 1293
Query: 324 IGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDV 145
+ +D RH+MLL DVMT +GEVLGITR G+ KMKDSVL LASFEKT DHLF AA +D
Sbjct: 1294 LTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDS 1353
Query: 144 IHGVSECIIMGTPMTVGTGTFKLMQKYDKKAVLKQNSPIFE 22
I G+SECI++G +GT F+L+++ +++ K +F+
Sbjct: 1354 IEGISECIVLGKLAPIGTNVFQLIRRTEEEEEQKPKELLFD 1394
>gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida
albicans SC5314]
Length = 1448
Score = 1177 bits (3045), Expect = 0.0
Identities = 668/1455 (45%), Positives = 908/1455 (61%), Gaps = 69/1455 (4%)
Frame = -1
Query: 4179 ADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXX 4000
A K +K G++F + + + V I LY+ +G++ P +G LD KMG+
Sbjct: 9 APKCIK--GLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRV-PKEHGALDTKMGISSNAQ 65
Query: 3999 XXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSR 3820
C GHFG+ L +PVFH+G+FK I +LQCICK+C+++LL + R +
Sbjct: 66 ECSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKRQYLN 125
Query: 3819 QVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVG----AVLKIAFASPVS 3652
+ P++D L R + K+I+ CKK C C NG VKKA A LKI +
Sbjct: 126 DLRKPHIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAALKIVHDT--- 182
Query: 3651 VDELGKFATM------------FSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPV 3508
+GK T+ F N E+ +++ L NPL LF I D +
Sbjct: 183 FRWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDL-NPLKTLNLFKQITPQDCEL 241
Query: 3507 LMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKH 3328
+ + P + +P PPVCIRPSV+ + ++ EDD+T+KL EI+ T+ +++
Sbjct: 242 FGLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDSQSN--EDDLTVKLTEIVWTSSMIRAG 299
Query: 3327 KRDGAPSKTLFETWEHLQIQCALYINSE-----MSGLPPDMQPKRAMRAFTQRLKGKQGR 3163
G L E W++LQ+ A+YINS+ +S + + +RAF QRLKGKQGR
Sbjct: 300 IVKGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGR 359
Query: 3162 FRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVING 2983
FRGNL GKRVDFSGRTVISPDPNL+ID+V VP VA LT+PE N +K+++LV+NG
Sbjct: 360 FRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNG 419
Query: 2982 SDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKI 2803
D+HPGANY++++ K+ L++G R +LAK L++GD +ERH++D DVVLFNRQPSLH++
Sbjct: 420 PDIHPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRL 479
Query: 2802 SIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLIT 2623
SI+SH AK+ P RTFR NEC CTPYNADFDGDEMNLH+PQT EA+AEA LM VKNNL+T
Sbjct: 480 SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 539
Query: 2622 PRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXX 2443
P+SGEP++AA QDFITG YL++HKD+F RA + + + + DA +
Sbjct: 540 PKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKP--- 596
Query: 2442 PVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL-----ELCSKDSYVIIRNSVLL 2278
V LWTGKQ+ L+I+P+K S+V +NL AKNK++ E+ D +V+IR S +L
Sbjct: 597 -VMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRGSKIL 655
Query: 2277 AGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPS 2098
+G +DKS LG K ++FY ++RDYG A AM R+A++ FL NRGFSIGI DV P+
Sbjct: 656 SGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPA 715
Query: 2097 EQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQV 1918
++L ++K +V+ Y KC Q I GKL+ QPGC EE+TLE+ I LS +R+ G V
Sbjct: 716 DELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDV 775
Query: 1917 CLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKK 1738
C+R L NAPL MA CGSKGS +N+SQM+A VGQQ ISGHR PDGF++RSLPHF + K
Sbjct: 776 CIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSK 835
Query: 1737 TPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASY 1558
TP++KGFV NSF+SGLTP EF FH + GREGLVDTAVKTAETGYM RRL+K LEDL + Y
Sbjct: 836 TPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQY 895
Query: 1557 DGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQ----PIPV 1390
D TVR+S +++F +G DGLDP ME D V+F +HA N+ + P +
Sbjct: 896 DNTVRNSSNGIVQFTYGGDGLDPYDMEG-DAKPVNFNRQWDHAYNLTYNVDDASLLPYQI 954
Query: 1389 DKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKE 1210
++L + + A ++ K +Y + + L++ + +I+ QN D TK+
Sbjct: 955 EELVDSVLAPLENKLI-RYDNLGNALNDKEKEQKIEYID--QNDGERDFYKSIRDFLTKK 1011
Query: 1209 SCKIC-----KNLEAYKTSLLAN-----------------SCLTKTQLCSFIELCYYKVA 1096
S ++ + L+AY T+ + S ++ + +F+E C YK +
Sbjct: 1012 SIRLALLREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSKISSKAVKTFLEQCLYKYS 1071
Query: 1095 RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTP 916
RA EPGTAVGAI A SIGEP TQMTLKTFHFAGVASMN+T GVPRIKEIINA K ISTP
Sbjct: 1072 RARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTP 1131
Query: 915 IITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLE 736
II A L++ DE AR K RIEKT L ++ YIE+VY + +L +K++ + I LQLE
Sbjct: 1132 IINAVLVNDDDEIAARVAKGRIEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQLE 1191
Query: 735 VCMESISYAIATSKVCPQMRGCK--IVAHGK----TMMAIRPPSTSKLSKTM-------- 598
+ +E+I+ AIA + P+++ + + GK ++ I+ T L T+
Sbjct: 1192 LNLENIAVAIANA---PKLKIAQSDVSVTGKDRINVLVNIKETKTESLRNTVDPKNALFF 1248
Query: 597 TMQILKYSLANVVVKGIPSVNRCVIHA--DEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT 424
MQ LK +L V +KG+P++ R VI+ D KK LLVEG + V+++ G+ KT
Sbjct: 1249 RMQYLKRALPGVCIKGLPNIFRAVINIKDDGKK----ELLVEGYGLKDVMNTEGIVGTKT 1304
Query: 423 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 244
N+ L V +LGIEAAR II EI TM HG+ +D RH+ LL DVMTY+GEVLGITR
Sbjct: 1305 TTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRF 1364
Query: 243 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 64
GL KM+DSVL LASFEKT DHLF+AAFF + D I GVSECII+G M++GTG+FKL++
Sbjct: 1365 GLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLVKSS 1424
Query: 63 D-KKAVLKQNSPIFE 22
+ +K LK+ +FE
Sbjct: 1425 NCEKKALKKKPTVFE 1439
>gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida
albicans SC5314]
Length = 1448
Score = 1177 bits (3044), Expect = 0.0
Identities = 668/1455 (45%), Positives = 908/1455 (61%), Gaps = 69/1455 (4%)
Frame = -1
Query: 4179 ADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXX 4000
A K +K G++F + + + V I LY+ +G++ P +G LD KMG+
Sbjct: 9 APKCIK--GLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRV-PKEHGALDTKMGISSNAQ 65
Query: 3999 XXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSR 3820
C GHFG+ L +PVFH+G+FK I +LQCICK+C+++LL + R +
Sbjct: 66 ECSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKRQYLN 125
Query: 3819 QVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVG----AVLKIAFASPVS 3652
+ P++D L R + K+I+ CKK C C NG VKKA A LKI +
Sbjct: 126 DLRKPHIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAALKIVHDT--- 182
Query: 3651 VDELGKFATM------------FSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPV 3508
+GK T+ F N E+ +++ L NPL LF I D +
Sbjct: 183 FRWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDL-NPLKTLNLFKQITPQDCEL 241
Query: 3507 LMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKH 3328
+ + P + +P PPVCIRPSV+ + ++ EDD+T+KL EI+ T+ +++
Sbjct: 242 FGLDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDSQSN--EDDLTVKLTEIVWTSSMIRAG 299
Query: 3327 KRDGAPSKTLFETWEHLQIQCALYINSE-----MSGLPPDMQPKRAMRAFTQRLKGKQGR 3163
G L E W++LQ+ A+YINS+ +S + + +RAF QRLKGKQGR
Sbjct: 300 IVKGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGR 359
Query: 3162 FRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVING 2983
FRGNL GKRVDFSGRTVISPDPNL+ID+V VP VA LT+PE N +K+++LV+NG
Sbjct: 360 FRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNG 419
Query: 2982 SDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKI 2803
D+HPGANY++++ K+ L++G R +LAK L++GD +ERH++D DVVLFNRQPSLH++
Sbjct: 420 PDIHPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRL 479
Query: 2802 SIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLIT 2623
SI+SH AK+ P RTFR NEC CTPYNADFDGDEMNLH+PQT EA+AEA LM VKNNL+T
Sbjct: 480 SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 539
Query: 2622 PRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXX 2443
P+SGEP++AA QDFITG YL++HKD+F RA + + + + DA +
Sbjct: 540 PKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKP--- 596
Query: 2442 PVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL-----ELCSKDSYVIIRNSVLL 2278
V LWTGKQ+ L+I+P+K S+V +NL AKNK++ E+ D +V+IR S +L
Sbjct: 597 -VMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRGSKIL 655
Query: 2277 AGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPS 2098
+G +DKS LG K ++FY ++RDYG A AM R+A++ FL NRGFSIGI DV P+
Sbjct: 656 SGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPA 715
Query: 2097 EQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQV 1918
++L ++K +V+ Y KC Q I GKL+ QPGC EE+TLE+ I LS +R+ G V
Sbjct: 716 DELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDV 775
Query: 1917 CLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKK 1738
C+R L NAPL MA CGSKGS +N+SQM+A VGQQ ISGHR PDGF++RSLPHF + K
Sbjct: 776 CIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSK 835
Query: 1737 TPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASY 1558
TP++KGFV NSF+SGLTP EF FH + GREGLVDTAVKTAETGYM RRL+K LEDL + Y
Sbjct: 836 TPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQY 895
Query: 1557 DGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQ----PIPV 1390
D TVR+S +++F +G DGLDP ME D V+F +HA N+ + P +
Sbjct: 896 DNTVRNSSNGIVQFTYGGDGLDPYDMEG-DAKPVNFNRQWDHAYNLTYNVDDASLLPYQI 954
Query: 1389 DKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKE 1210
++L + + A ++ K +Y + + L++ + +I+ QN D TK+
Sbjct: 955 EELVDSVLAPLENKLI-RYDNLGNALNDKEKEQKIEYID--QNDGERDFYKSIRDFLTKK 1011
Query: 1209 SCKIC-----KNLEAYKTSLLAN-----------------SCLTKTQLCSFIELCYYKVA 1096
S ++ + L+AY T+ + S ++ + +F+E C YK +
Sbjct: 1012 SIRLALLREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSKISSKAVKTFLEQCLYKYS 1071
Query: 1095 RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTP 916
RA EPGTAVGAI A SIGEP TQMTLKTFHFAGVASMN+T GVPRIKEIINA K ISTP
Sbjct: 1072 RARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTP 1131
Query: 915 IITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLE 736
II A L++ DE AR K RIEKT L ++ YIE+VY + +L +K++ + I LQLE
Sbjct: 1132 IINAVLVNDDDEIAARVAKGRIEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQLE 1191
Query: 735 VCMESISYAIATSKVCPQMRGCK--IVAHGK----TMMAIRPPSTSKLSKTM-------- 598
+ +E+I+ AIA + P+++ + + GK ++ I+ T L T+
Sbjct: 1192 LNLENIAVAIANA---PKLKIAQSDVSVTGKDRINVLVNIKETKTESLRNTVDPKNALFF 1248
Query: 597 TMQILKYSLANVVVKGIPSVNRCVIHA--DEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT 424
MQ LK +L V +KG+P++ R VI+ D KK LLVEG + V+++ G+ KT
Sbjct: 1249 RMQYLKRALPGVCIKGLPNIFRAVINIKDDGKK----ELLVEGYGLKDVMNTEGIVGTKT 1304
Query: 423 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 244
N+ L V +LGIEAAR II EI TM HG+ +D RH+ LL DVMTY+GEVLGITR
Sbjct: 1305 TTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRF 1364
Query: 243 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 64
GL KM+DSVL LASFEKT DHLF+AAFF + D I GVSECII+G M++GTG+FKL++
Sbjct: 1365 GLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLVKSS 1424
Query: 63 D-KKAVLKQNSPIFE 22
+ +K LK+ +FE
Sbjct: 1425 NCEKKALKKKPTLFE 1439
>gi|6324690|ref|NP_014759.1| RNA polymerase III large subunit; Rpo31p
[Saccharomyces cerevisiae]
gi|133356|sp|P04051|RPC1_YEAST DNA-DIRECTED RNA POLYMERASE III
LARGEST SUBUNIT (C160)
gi|66978|pir||RNBY3L DNA-directed RNA polymerase (EC 2.7.7.6) III
160K chain - yeast (Saccharomyces cerevisiae)
gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit
[Saccharomyces cerevisiae]
gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
Length = 1460
Score = 1171 bits (3029), Expect = 0.0
Identities = 662/1439 (46%), Positives = 893/1439 (62%), Gaps = 74/1439 (5%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
++ G++F+ + + V + L+ D+E P G LDPKMGV
Sbjct: 12 RIKGLEFSALSAADIVAQSEVEVSTRDLF-DLEKDRAPKANGALDPKMGVSSSSLECATC 70
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 3805
C GHFG+ L +PVFHIG+FK TIQ+LQ ICKNCS+ILL+ R F ++ P
Sbjct: 71 HGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRP 130
Query: 3804 NLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVG----AVLKIAF---------A 3664
+D L R + K+I+ CKK C HCG NG VKKA A LKI +
Sbjct: 131 GVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWVGKKS 190
Query: 3663 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE 3484
+P +G++ + + N E+ +V++ L NPL LF IK D +L + +
Sbjct: 191 APEKDIWVGEWKEVLAHNPELERYVKRCMDDL-NPLKTLNLFKQIKSADCELLGIDATVP 249
Query: 3483 K-HPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPS 3307
P + +P PPVCIRPSV+ + + EDD+T+KL EI+ T+ ++K G
Sbjct: 250 SGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISI 309
Query: 3306 KTLFETWEHLQIQCALYINSEMSGLPPDMQPK--------RAMRAFTQRLKGKQGRFRGN 3151
+ E W++LQ+ A+YINS+ + P M P + +R F QRLKGKQGRFRGN
Sbjct: 310 NNMMEHWDYLQLTVAMYINSD--SVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGN 367
Query: 3150 LCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVH 2971
L GKRVDFSGRTVISPDPNL ID+V VP VA LT+PE V N K+++L++NG +VH
Sbjct: 368 LSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVH 427
Query: 2970 PGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMS 2791
PGANYL+++ ++ L+YG R +LAKNL++GD +ERHL+D DVVLFNRQPSLH++SI+S
Sbjct: 428 PGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILS 487
Query: 2790 HRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 2611
H AK+ P RTFR NEC CTPYNADFDGDEMNLH+PQT EA+AEA LM VKNNL+TP+SG
Sbjct: 488 HYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSG 547
Query: 2610 EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVEL 2431
EP++AA QDFITG YL++HKD+F RA + + + + D L
Sbjct: 548 EPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPYY----L 603
Query: 2430 WTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL------ELCSKDSYVIIRNSVLLAGC 2269
WTGKQ+ L+I+P+ S V +NL AKNK + E+ D +VIIR S +L+G
Sbjct: 604 WTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQILSGV 663
Query: 2268 LDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQL 2089
+DKS+LG K ++FY ++RDYG A +AM R+A++ FL NRGFSIGI DV P++ L
Sbjct: 664 MDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDL 723
Query: 2088 LREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLR 1909
++K +LV+ Y KC + I +G+L+ QPGC EE+TLE+ I LS +R+ G VC+
Sbjct: 724 KQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIN 783
Query: 1908 NLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPE 1729
L +NAPL MA CGSKGS +N+SQM+A VGQQ ISG+R PDGF++RSLPHF + KTP+
Sbjct: 784 ELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQ 843
Query: 1728 AKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGT 1549
+KGFV NSF+SGL+P EF FH + GREGLVDTAVKTAETGYM RRL+K LEDL YD T
Sbjct: 844 SKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNT 903
Query: 1548 VRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQ----PIPVDKL 1381
VR+S +++F +G DGLDP ME + V+F +HA NI + P + +
Sbjct: 904 VRTSANGIVQFTYGGDGLDPLEMEG-NAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMET 962
Query: 1380 DEVLKAEIQKKF-----KGKYVHFAD-KLSEYITQTEIKKS-----KKWQNGKAHCGNHE 1234
+ ++++ G V D +EY+ Q + ++ +++ NGKA
Sbjct: 963 ANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKA------ 1016
Query: 1233 TADLKTKESCKICKNLEA-----------------YKTSLLANSCLTKTQLCSFIELCYY 1105
TA ++S + LE KTS+ +++ + F+E+ +
Sbjct: 1017 TALANLRKSRGMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALF 1076
Query: 1104 KVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTI 925
K +A EPGTA+GAI A SIGEP TQMTLKTFHFAGVASMN+T GVPRIKEIINA K I
Sbjct: 1077 KYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVI 1136
Query: 924 STPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLL 745
STPII A L++ DE AR VK R+EKT L ++ Y+++VY + F+ V+++ I L
Sbjct: 1137 STPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKL 1196
Query: 744 QLEVCMESISYAIA-TSKVCPQMRGCKIVAHGKTMMAIRPP-------STSKLSKT---- 601
QLE+ +E I+ AI SK+ Q I+ + + + P STS +
Sbjct: 1197 QLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSENDV 1256
Query: 600 -MTMQILKYSLANVVVKGIPSVNRCVIH-ADEKKGDFYSLLVEGTDFRSVLSSVGVDPRK 427
MQ L+ +L +VVVKG+P ++R VI+ D+ K + LLVEG R V+ + GV +
Sbjct: 1257 FYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRE---LLVEGYGLRDVMCTDGVIGSR 1313
Query: 426 TNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITR 247
T N+ L V VLGIEAAR II EI TM HG+ +D RH+ LL DVMTY+GEVLGITR
Sbjct: 1314 TTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITR 1373
Query: 246 NGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQ 70
GL KM+DSVL LASFEKT DHLF+AAF+ ++D + GVSECII+G M++GTG+FK+++
Sbjct: 1374 FGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVK 1432
>gi|49080526|ref|XP_403771.1| hypothetical protein UM06156.1 [Ustilago
maydis 521]
gi|46101808|gb|EAK87041.1| hypothetical protein UM06156.1 [Ustilago
maydis 521]
Length = 1400
Score = 1144 bits (2959), Expect = 0.0
Identities = 649/1397 (46%), Positives = 881/1397 (62%), Gaps = 28/1397 (2%)
Frame = -1
Query: 4194 EQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGV 4015
+Q D K+ ++F + + + + + LY E + +P G LD ++GV
Sbjct: 2 KQLVSQDAPKKIKHIQFGVLSKQDIVNMSEIEVTTRDLYTIGESERKPVANGTLDRRLGV 61
Query: 4014 XXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQH 3835
DCVGH+GY L +PVFH+GFFK T+ +LQ ICKNC+++LL
Sbjct: 62 SDKNSLCETCHLKMADCVGHYGYIKLVLPVFHVGFFKHTVAILQSICKNCATVLLEEPDR 121
Query: 3834 RVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIA---FA 3664
R F ++ PNL+ L R K + +K C CG NGTVKK LKI F
Sbjct: 122 RKFLKRFRRPNLENLDRTRTFKAVNTIARKVLYCPKCGYTNGTVKKQ--GQLKIVHEKFR 179
Query: 3663 SPVSVDELGKFATMFSSNQEVGD-----HVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMV 3499
+ + E +F F++N ++G+ H+ K + L NPL LF I + D +L +
Sbjct: 180 AKKTAAEHDEFKASFATNIKMGNGDISPHLNKAQEDL-NPLKALDLFKRISDEDCELLGL 238
Query: 3498 RSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRD 3319
R E P + + + VPPVCIRPSV + T EDDVT+KL EI+ TN +LK
Sbjct: 239 RP-EFGRPEEYIWQYICVPPVCIRPSVAQD--GATNEDDVTIKLTEIIFTNSLLKLGLVK 295
Query: 3318 GAPSKT---LFETWEHLQIQCALYINSEMSGLPPDMQP-KRAMRAFTQRLKGKQGRFRGN 3151
G T L + WE LQ+ ALYINSE+ G+P QP ++ R F QRLKGKQGRFRGN
Sbjct: 296 GGKGTTTSQLVQQWEFLQLTVALYINSELPGVPT--QPGQKPSRGFCQRLKGKQGRFRGN 353
Query: 3150 LCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVH 2971
L GKRVDFSGRTVI PDPNL+ID+V VP VA LT+PE V NIE++RQ V NG+D+H
Sbjct: 354 LSGKRVDFSGRTVIGPDPNLKIDEVAVPQRVAKILTYPERVFQHNIEQLRQAVRNGTDIH 413
Query: 2970 PGANYLVEKKTGNKKLLKY-GKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIM 2794
PGANYL++ KTG K+ LK+ G R+ELA+ LR+GD +ERH+ D D+VLFNRQPSLHK+SIM
Sbjct: 414 PGANYLMDGKTGFKRFLKFPGMREELAEKLRVGDVVERHIRDGDIVLFNRQPSLHKLSIM 473
Query: 2793 SHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRS 2614
SHRAK+ P RTFR NECAC PYNADFDGDEMN+H+PQT EA+ EA+ LM VK+NL+TPR+
Sbjct: 474 SHRAKIRPWRTFRLNECACNPYNADFDGDEMNMHVPQTEEARTEATVLMGVKHNLVTPRN 533
Query: 2613 GEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVE 2434
GEP++AAIQDFIT YL++ +D F RA+ + + DA V
Sbjct: 534 GEPIIAAIQDFITASYLISKRDRFFDRAQFSQICSYFSDADLHIDIPPPAIMKP----VR 589
Query: 2433 LWTGKQLIELIIRPDKGSDVSLNLTAKNKSY---TGN--LELCSKDSYVIIRNSVLLAGC 2269
LWTGKQ++ +IRP++ S +NL A+ +++ TG ++ D +++I NS ++ G
Sbjct: 590 LWTGKQVMSCLIRPNRKSPHLVNLEAQCRTFEKPTGGHPKDMSPNDGWLVIVNSQVMCGV 649
Query: 2268 LDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQL 2089
DKS +G K ++F +++RDYG DAA+ AM RLA+ +L+N+GFS+GI DV P +L
Sbjct: 650 FDKSTVGDGKKNSVFGVMLRDYGPDAAITAMNRLAKTCARWLANQGFSLGINDVIPGPKL 709
Query: 2088 LREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLR 1909
K V+ Y++C I++ + GKL+ PGC +E+TLE++I LS +R G++C+
Sbjct: 710 RMNKDAKVEAAYAECLDLIEKAKYGKLENLPGCDQEQTLENMISGVLSGVRSDVGEICMT 769
Query: 1908 NLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPE 1729
LS++NAPL MAVCGSKGS IN++QM+ACVGQQ I+G R P+GF++RSLPHF +K K P
Sbjct: 770 ELSRHNAPLVMAVCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFAKKSKDPP 829
Query: 1728 AKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGT 1549
+KGFV NSF+SGLTPTEF FH + GREGLVDTAVKTAETGYMQRRL+K LEDL YD +
Sbjct: 830 SKGFVRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDLS 889
Query: 1548 VRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDF---THVLEHAKNIQTTKEQPIPVDKLD 1378
VR+SVG V++F++G+DGLDPA +E + F H L ++ P ++
Sbjct: 890 VRNSVGGVVQFIYGDDGLDPAELEGNAMPIEPFRLWRHCLAITHHVAGRGLLPY---EIM 946
Query: 1377 EVLKAEI--QKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESC 1204
EV+K E+ + K + D + E++ + +++ K + G ++ + E
Sbjct: 947 EVVKRELSSDRFVKTCTQKYRDSVYEFLYENVYQRAIKMREAFGMYG-ADSREEHWDEQT 1005
Query: 1203 KICKNLEAYKTSLLANSC-LTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPST 1027
+ + + +++ N + + + +F+E CY K +A EPG+AVGA+ A SIGEP T
Sbjct: 1006 DLSLGADRAQWAIVNNKTKIKEVAVLAFLEQCYIKYMKAKIEPGSAVGAVGAQSIGEPGT 1065
Query: 1026 QMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIE 847
QMTLKTFHFAGVASMN+T GVPRIKEIINA K I+TPII A L+ E AR VK RIE
Sbjct: 1066 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVINTPIIEAKLVSEKSERAARIVKGRIE 1125
Query: 846 KTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAI--ATSKVCPQMRG 673
KT LG+I IEE + +L V ++ + I+ LQLE+ + I +AI A + R
Sbjct: 1126 KTYLGDIASVIEEAWAAQYTYLGVHIDMEAIQKLQLEITLNDIKWAIVNAPKLKIKEERV 1185
Query: 672 CKIVAHGKTMMAIRPPSTSKLSKT-MTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDF 496
+ + + + P + K ++ LK +L ++VVKGIP R VI +DEK
Sbjct: 1186 MVVPKKNRIRIYVPPEAPDKEGDVYYNLKALKRALPSIVVKGIPQATRAVI-SDEK--GT 1242
Query: 495 YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGL 316
LLVEG V+++ GV +T+ N+ + + VLGIEAAR+ + EI TM AHG+ +
Sbjct: 1243 RKLLVEGYGLLKVMTTEGVIGTQTHTNHVMEMQAVLGIEAARTSVYREIEHTMSAHGMSI 1302
Query: 315 DRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHG 136
D RH+MLLAD MTY+GEVLGITR G+ KMKDSVL+LASFEKT DHLF+AA F ++D + G
Sbjct: 1303 DPRHIMLLADTMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAALFGKKDEVLG 1362
Query: 135 VSECIIMGTP-MTVGTG 88
VSE IIMG P TVGTG
Sbjct: 1363 VSESIIMGNPAQTVGTG 1379
>gi|50549343|ref|XP_502142.1| hypothetical protein [Yarrowia
lipolytica]
gi|49648009|emb|CAG82462.1| unnamed protein product [Yarrowia
lipolytica CLIB99]
Length = 1483
Score = 1119 bits (2895), Expect = 0.0
Identities = 653/1458 (44%), Positives = 882/1458 (59%), Gaps = 82/1458 (5%)
Frame = -1
Query: 4197 KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMG 4018
K++F +D + G++F + + + + V + LY+ +G+ P YG LDP+MG
Sbjct: 10 KDRF-SSDPPRVIGGIEFGALSPQEILKLSEVEVATRDLYDLQKGRA-PMEYGALDPRMG 67
Query: 4017 VXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQ 3838
V C GHFG+ L +P FHIG+FK TI +LQ +CK+C+ ILL+ E
Sbjct: 68 VSSNMSKCKTCAEPLATCPGHFGHVKLALPCFHIGYFKATISILQNVCKDCARILLSDED 127
Query: 3837 HRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVL---KIAF 3667
R F ++ P +D L R + K++ CKK C HC NG VKKA + K
Sbjct: 128 RRKFLTELRRPGIDNLRRMQILKKVNEQCKKQRRCVHCNSINGVVKKAGPLKIIHDKFRH 187
Query: 3666 ASPVSVDELGKFATMFSSNQE-VGDHVRKMKFTL--LNPLFVQKLFSNIKEGDIPVLMVR 3496
+E +F F++ +E + D R K + LNPL V LF I D +L +
Sbjct: 188 VGKKIPEEKTEFDNSFNTAKESIPDVERLQKKAMDDLNPLKVFNLFREILPMDCELLGMD 247
Query: 3495 SGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDG 3316
G+ + P + MP PPVCIRPSV+ + + + EDD+T+KL EI+ T+ +++ + G
Sbjct: 248 PGKGR-PETYIWRYMPAPPVCIRPSVMQD--SASNEDDLTVKLTEIVWTSAIIEAGLKQG 304
Query: 3315 APSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKR 3136
+L E WE LQ+ A+YINS+ + P + +RA TQRLKGKQGRFRGNL GKR
Sbjct: 305 MAVASLMEQWELLQLAVAVYINSD-TPQGPGQSASKPIRALTQRLKGKQGRFRGNLSGKR 363
Query: 3135 VDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANY 2956
VDFSGRTVISPDPNLRIDQV VP VA LT+PE V + NIEK+R LVI G HPGANY
Sbjct: 364 VDFSGRTVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLRNLVITGPSQHPGANY 423
Query: 2955 LVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKV 2776
L +K ++ L++G R ++A+ L +GD +ERHL+D DVVLFNRQPSLH++SI++H A++
Sbjct: 424 LFKKGESLRRNLRFGDRAKIAERLEIGDVVERHLEDGDVVLFNRQPSLHRLSILAHFAQI 483
Query: 2775 MPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVA 2596
P RTFR NEC CTPYNADFDGDEMNLH+PQT EA+ EA LM VK+NL+TPRSGEP++A
Sbjct: 484 RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAMCLMGVKHNLVTPRSGEPIIA 543
Query: 2595 AIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQ 2416
A QDFITG +L++ KD + R + A + D + V+LWTGKQ
Sbjct: 544 ATQDFITGSFLISKKDYMIDRRTFCQLLAMMSDGDMQFDIPPPAIQKP----VQLWTGKQ 599
Query: 2415 LIELIIRPDKGSDVSLNLTAKNKSYTGN-----LELCSKDSYVIIRNSVLLAGCLDKSLL 2251
+ L+IRP+K S V +NL AKNK++ ++ D +++IRNS ++ G +DK+ L
Sbjct: 600 VFSLLIRPNKSSKVIINLDAKNKTFQPPPQGYPRDMSPNDGFLVIRNSQVMCGAMDKATL 659
Query: 2250 GSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQ 2071
G K ++FY ++RDYG D A AM R+A++ +L RGFSIGI DV P +L K
Sbjct: 660 GDGKKDSVFYSILRDYGPDEAAGAMNRMAKLCARWLGGRGFSIGISDVTPGAELSSTKEI 719
Query: 2070 LVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYN 1891
LV+ Y+KC + I+ L +GKL+ QPGCT +TLE+ I LS +R+ G+VC++ L K N
Sbjct: 720 LVEQAYAKCDELIEALAQGKLEPQPGCTPAQTLEAKIGGLLSKVREEVGEVCIKELEKSN 779
Query: 1890 APLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVA 1711
APL MA CGSKGS +N+SQM+A VGQQ ISG R P+GF++RSLPHF + TP +KGFV
Sbjct: 780 APLIMATCGSKGSTLNVSQMVAVVGQQIISGKRVPNGFQDRSLPHFRKFSVTPPSKGFVR 839
Query: 1710 NSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVG 1531
NSFYSGL P EF FH + GREGLVDTAVKTAETGYM RRL+K LEDL A YD TVR+S
Sbjct: 840 NSFYSGLDPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSARYDSTVRTSSN 899
Query: 1530 DVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAK---------------NIQTTKEQPI 1396
V++F +G DGLDP ME D VDF H + N+ + + P+
Sbjct: 900 GVVQFRYGGDGLDPFDMEG-DARPVDFNRTWTHCEYISSKLGIEPEAETINVSSVPDTPL 958
Query: 1395 PVDKLDEVLKAEI---QKKFK-----GKYVHFADKLS-------EYITQTEIKKS-KKWQ 1264
++ V++ +I ++K + G + A K + +Y+ + + ++ +
Sbjct: 959 KPFEIMAVVEEQIFALEQKLQRMDNSGNMLSVATKAARDRASAEKYVDEVDPRRDFLQSI 1018
Query: 1263 NGKAHCGNHETADLKTKESCKICKNLE--------AYKTSLLANSCLTK--TQLC----- 1129
G + E A + +ES + LE L A + + Q+C
Sbjct: 1019 RGFIYTKAEELATV--RESRGLMGLLEKPDGDEYDGQDFDLFAPKAVIRAVNQVCRISHR 1076
Query: 1128 ---SFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPR 958
+F++ C K +A EPGTAVGAI A SIGEP TQMTLKTFHFAGVASMN+T GVPR
Sbjct: 1077 MVDTFLQACLRKYQKAQVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1136
Query: 957 IKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLL 778
IKEIINA K ISTPIIT L + + AR VK RIEKT LG+I YI++ Y +
Sbjct: 1137 IKEIINASKAISTPIITTVLNNETELQAARIVKGRIEKTLLGDIAHYIQDEYSYAKASVR 1196
Query: 777 VKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMM------AIRPPSTS 616
V+++ I L LE+ M+ I AI + G + K + A++ ++
Sbjct: 1197 VRIDFNTIDHLLLEIDMDQIREAIIKAPKLKLKPGQVSIEEEKYIRVDIESDAVKKNGST 1256
Query: 615 KLSKT----------------MTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLL 484
+ T + Q LK L NVVVKG ++R VI+ E K + + LL
Sbjct: 1257 TIIDTDGEIFEEGVESDTAMFLRTQHLKRVLPNVVVKGFTDISRAVINIRE-KDNTHELL 1315
Query: 483 VEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRH 304
VEG R V+++ GV +T+ N+ L V +VLGIEAAR+ II+EI TM HG+ +D RH
Sbjct: 1316 VEGYGLRHVMTTSGVIGTQTSTNHVLEVKEVLGIEAARASIIHEIDYTMSKHGMSVDPRH 1375
Query: 303 VMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSEC 124
+ LL DVMTY+G+VLGITR GL KM+DSVL LASFEKT DHLF+AAF+ + D + GVSEC
Sbjct: 1376 ITLLGDVMTYKGDVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKTDDVEGVSEC 1435
Query: 123 IIMGTPMTVGTGTFKLMQ 70
II+G M++GTG FK++Q
Sbjct: 1436 IILGQGMSIGTGAFKVLQ 1453
>gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300
[Cryptococcus neoformans var. neoformans B-3501A]
Length = 1466
Score = 1111 bits (2873), Expect = 0.0
Identities = 634/1435 (44%), Positives = 864/1435 (60%), Gaps = 64/1435 (4%)
Frame = -1
Query: 4197 KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVE-GKLQPANYGPLDPKM 4021
++ + +D ++ ++F P + + + + V + +LY++ E G A GPLD +M
Sbjct: 11 EKHYVSSDVPRRIKHIQFQPFTPKDIVRISEVQVSIAELYQNNEDGTRTTALQGPLDARM 70
Query: 4020 GVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPE 3841
G CVGH+GY L +PVFHIG+F+ TI +L CICK C+ +LL
Sbjct: 71 GPNEKGKKCATCGEDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTCARVLLPET 130
Query: 3840 QHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVL-----K 3676
+ F ++ PNL+ L R++ K ++AACKK + C++CG NG VKK+ + +
Sbjct: 131 ERASFLKRFRRPNLESLQRQSAAKAVLAACKKQNICTYCGAPNGIVKKSGPLRISHEPYR 190
Query: 3675 IAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVR 3496
A + + + + F + NQ V H+ K L NPL V LF I D +L +
Sbjct: 191 AAKMASMKDEWMATFKNAVAENQAVATHLAKAVDDL-NPLKVLNLFERITAEDCELLSLH 249
Query: 3495 SGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDG 3316
E P D + + VPP CIRPSV SE AG EDD+T KL EI+ N+ L G
Sbjct: 250 P-EVGRPEDYIWQYISVPPPCIRPSVASE--AGNNEDDLTAKLAEIVNYNNTLALMMDLG 306
Query: 3315 APSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKR 3136
+ + WE L ALYINS+ G+ + +R F QRLKGKQGRFRGNL GKR
Sbjct: 307 RGIEMISSNWEVLGQAVALYINSQAPGM--QTIGSKPIRGFVQRLKGKQGRFRGNLSGKR 364
Query: 3135 VDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANY 2956
VDFSGRTVI PDPNLRID+V VP VA+ L++PE V N++ MRQ +INGS +HPGAN
Sbjct: 365 VDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPGANV 424
Query: 2955 LVEKKTGNKKLLKYG--------KRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKIS 2800
L E+K N ++ R A+ L++GD + RH+ D D+VLFNRQPSLHK+S
Sbjct: 425 L-ERKHENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHKLS 483
Query: 2799 IMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITP 2620
IM HR +V P RTFR NEC C PYNADFDGDEMNLH+PQT EA+ EA ELM+VK NL+TP
Sbjct: 484 IMCHRVRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTP 543
Query: 2619 RSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXP 2440
R+GEP++AAIQDFIT YLL+ +D F R + + + L DA+ K +
Sbjct: 544 RNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIVSYLDDANLKIEMPPPTIWKP---- 599
Query: 2439 VELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL-------ELCSKDSYVIIRNSVL 2281
V LWTGKQ+ L++RP+K S V +NL AK ++ ++ D Y++I+NS +
Sbjct: 600 VRLWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPDMSPNDGYLVIQNSEI 659
Query: 2280 LAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRP 2101
+ G DK+ +G K ++F +++RDYG + A AM RLA++A +L+N GFS+GI DV P
Sbjct: 660 MCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVIP 719
Query: 2100 SEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQ 1921
L K V+ Y +C +I ++GKL+ PGC +E TLES I + LS +R+ G+
Sbjct: 720 GPILHASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDVREAVGK 779
Query: 1920 VCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKK 1741
+C++ LS++NAPL MA CGSKGS IN++QM+ACVGQQ I G R +GF++RSLPHF +K
Sbjct: 780 ICMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKS 839
Query: 1740 KTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCAS 1561
K P +KGFV NSF+SGLTP EF FH M GREGLVDTAVKTAETGYM RRL+K LEDLC
Sbjct: 840 KNPPSKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTH 899
Query: 1560 YDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHA---------------- 1429
YD +VR+SVG +++F +G+D LDPA +E D + V++ HA
Sbjct: 900 YDLSVRNSVGGIVQFQYGDDMLDPACLEG-DATPVEYVRSWTHACRTAGNQGRALYPYEV 958
Query: 1428 ----------------------KNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFADK 1315
K +++P P V+ + K+++G + F +
Sbjct: 959 RRIAARIYPESFVPPNFSLSPPKTKSRRRKEPTPP---PPVVAPTLPKEWEGCHHKFREN 1015
Query: 1314 LSEYITQTEIKK--SKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTK 1141
+++ +K+ ++ G + E A+ + + + A + L + +T+
Sbjct: 1016 TYKFVVDKIVKQMVDQRLARGLPDADDEEMAE---EYEALLNSDDPAVQRVLENANKVTE 1072
Query: 1140 TQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVP 961
QL SF+E C + RA EPG+ VGA+ A SIGEP TQMTLKTFHFAGVASMN+T GVP
Sbjct: 1073 AQLSSFLENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1132
Query: 960 RIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFL 781
RIKEIINA K ISTPII A L P E+ AR VK RIEKT LG+I IEE + + ++
Sbjct: 1133 RIKEIINAAKVISTPIIAAELAIPESETAARIVKGRIEKTVLGDIAAVIEESWTNANAYI 1192
Query: 780 LVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSK---L 610
V ++ +R LQLE+ +ESI +A+ + G ++ + + I + K +
Sbjct: 1193 EVHIDMDAVRRLQLEISLESIKWALVRANKLKIPEGSIHISQKTSRIRIWIDESDKDKGV 1252
Query: 609 SKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPR 430
++ LK ++ +V VKG+P++ R V+ DEK + LLV G V+ + GVD
Sbjct: 1253 GIYERLKFLKRAIPSVQVKGLPAIERGVVTKDEKNEKIHRLLVTGYGLSEVMGTEGVDGL 1312
Query: 429 KTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGIT 250
KT N+ + VLGIEAARS I NEI TM +HG+ +D RHVMLL DVMTY+GEVLGIT
Sbjct: 1313 KTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDPRHVMLLGDVMTYKGEVLGIT 1372
Query: 249 RNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGT 85
R G+ KMKDSVL+LASFEKT DHLF+A+ +S++D I GVSECIIMGTP G GT
Sbjct: 1373 RFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVSECIIMGTP-APGCGT 1426
>gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa (japonica
cultivar-group)]
gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa (japonica
cultivar-group)]
Length = 1383
Score = 1097 bits (2836), Expect = 0.0
Identities = 630/1414 (44%), Positives = 849/1414 (59%), Gaps = 24/1414 (1%)
Frame = -1
Query: 4197 KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMG 4018
KE F E ++ ++F+ +RQ+A V ++N+++Y +++P G LD +MG
Sbjct: 12 KEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNH---EMKPVPNGLLDTRMG 68
Query: 4017 VXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQ 3838
+C GHFGY L +PVF++GFF + +L+CICK+CS +LL +
Sbjct: 69 AANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLMEKD 128
Query: 3837 HRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFASP 3658
F +++ NP D L + A+ K++ CK S C CG NG KK ++ + S
Sbjct: 129 RLEFLKKMRNPKADPLQKSAIMKKVRDKCKL-SRCPWCGFINGVAKKGRAGLIILHDCSK 187
Query: 3657 VSVDELGKFATMFSSNQEVGDHVRKMKFTL-------LNPLFVQKLFSNIKEGDIPVLMV 3499
T+ S +E+ D + K L L+P V LF + + D +L +
Sbjct: 188 ----------TLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDEDCELLNL 237
Query: 3498 RSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRD 3319
EK L++T + VPPV IRPSV + ED +T+ L I TN +LK++ +
Sbjct: 238 GDRPEK----LIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQT 293
Query: 3318 GAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGK 3139
G F+ W+HLQ+Q YINS+ LP R QRLKGK GRFRGNL GK
Sbjct: 294 GGQFMKCFDCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGK 348
Query: 3138 RVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGAN 2959
R +++GRTVISPDPNLRI +V +PI +A LT+PE V+ NIEK+RQ + NG HPGAN
Sbjct: 349 RTEYTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGAN 408
Query: 2958 YLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAK 2779
++++ G K LKY R A++L+ G +ERHL+D D+VLFNRQPSLH++SIMSHRA+
Sbjct: 409 FIIQPD-GTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRAR 467
Query: 2778 VMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLV 2599
+MP RT RFNE C PYNADFDGDEMNLH+PQT EA+ EA LM V+NNL TP++GE LV
Sbjct: 468 IMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 527
Query: 2598 AAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGK 2419
A+ QDF+T +L+T KD F R+ + L DA P+ELWTGK
Sbjct: 528 ASTQDFLTSSFLVTRKDNFYDRSSFSLLCSYLGDA----MENIDLPTPALIKPIELWTGK 583
Query: 2418 QLIELIIRPDKGSDVSLNLTAKNKSYT----GNLE---LCSKDSYVIIRNSVLLAGCLDK 2260
QL +++RP+ + V LNLT K K Y LE +C D +V RNS LL+G + K
Sbjct: 584 QLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGK 643
Query: 2259 SLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLRE 2080
+ LG+ +K +F L+RDY AA M RLA+ + F+ N GFSIG+ DV+P E L +E
Sbjct: 644 ATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQE 703
Query: 2079 KGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLS 1900
K +D GY C I +G L+ QPGC +TLE I R L+ IR+ AG+VC+ L
Sbjct: 704 KKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLH 763
Query: 1899 KYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKG 1720
N+PL M+ CGSKGS INISQM+ACVGQQ++ G R P+GF +R+LPHF KTP AKG
Sbjct: 764 WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKG 823
Query: 1719 FVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRS 1540
FVANSFY+GLT TEFFFHTMGGREGLVDTAVKTAETGYM RRL+K LEDL YD TVR+
Sbjct: 824 FVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRN 883
Query: 1539 SVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAE 1360
+ G +++F++G+DG+DPA ME KDG ++ + K + T ++ E+L+
Sbjct: 884 ASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLF--MKVMATCPQRGQNTLSPGEILQI- 940
Query: 1359 IQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTK------ESCKI 1198
DKLSE+ ++ S+K++ + LK+ + +
Sbjct: 941 -----------LNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHV 989
Query: 1197 CKNLEAYKTSLLAN-SCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQM 1021
+ +++ S+ AN S ++ QL F++ C + E G ++GAI A SIGEP TQM
Sbjct: 990 GERHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQM 1049
Query: 1020 TLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKT 841
TLKTFHFAGVASMN+T GVPRIKEIINA K ISTPIITA LL D AR VK +EK
Sbjct: 1050 TLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKA 1109
Query: 840 TLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIAT-SKVCPQMRGCKI 664
LGE+ + I+ V L+VKL+ +RI L + + +S+ +I K+ + ++
Sbjct: 1110 VLGEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRV 1169
Query: 663 VAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVI-HADEKKGDFYSL 487
+ K+ + I P K + LK L V+VKGIP+V R VI E+ Y L
Sbjct: 1170 I--DKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKRYKL 1227
Query: 486 LVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRR 307
LVEGT+ +V+ + GVD KT N+ + V LGIEAAR II+EI TM +HG+ +D R
Sbjct: 1228 LVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSR 1287
Query: 306 HVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSE 127
H+MLLAD+MTY+GE+LGITR G+ KMK SVL+LASFEKT +HLF A++ + D I GVSE
Sbjct: 1288 HMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSE 1347
Query: 126 CIIMGTPMTVGTGTFKLMQKYDKKAVLK-QNSPI 28
CIIMG PM +GTG K+ Q+ D K Q PI
Sbjct: 1348 CIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPI 1381
>gi|49090376|ref|XP_406649.1| hypothetical protein AN2512.2
[Aspergillus nidulans FGSC A4]
gi|40744841|gb|EAA63997.1| hypothetical protein AN2512.2 [Aspergillus
nidulans FGSC A4]
Length = 2092
Score = 1090 bits (2819), Expect = 0.0
Identities = 629/1376 (45%), Positives = 839/1376 (60%), Gaps = 51/1376 (3%)
Frame = -1
Query: 4041 GPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCS 3862
GPLD +MG+ C GHFG+ L +P FH+G+FK I +LQ ICK CS
Sbjct: 710 GPLDARMGISNKTSTCQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECS 769
Query: 3861 SILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAV 3682
ILL + R F R++ P LD L R + KR+ C+K TC +CG NG VKK +
Sbjct: 770 HILLPEAERRAFLREMRRPRLDNLRRMQIAKRVNDRCRKTRTCENCGAVNGVVKKTGTSS 829
Query: 3681 LKI------AFASPVSVDELGKFATMF---------SSNQEVGDHVRKMKFTLLNPLFVQ 3547
LKI AF + S ++ + + SSN EV H +K + L N L V
Sbjct: 830 LKITHDKFRAFNASTSAKKIPPPSKIVFDRSLEEARSSNPEVEKHHKKAQDDL-NALRVL 888
Query: 3546 KLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKL 3367
LF I + D +L + +E P L +P PPVCIRPSV + A +TEDD+T KL
Sbjct: 889 NLFKRISDSDCELLGL-DPKEARPEMFLWQFIPAPPVCIRPSVGQD--ASSTEDDLTAKL 945
Query: 3366 MEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQ 3187
+I+ +N LK GAP +T+ E W+++Q+Q A+YINS++ GL K +R F Q
Sbjct: 946 GDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGK-PIRGFVQ 1004
Query: 3186 RLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEK 3007
RLKGKQGRFRGNL GKRVDFSGRTVISPDPNLR+D+V VP VA +T+PE+VN N EK
Sbjct: 1005 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEK 1064
Query: 3006 MRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFN 2827
++Q V NG PGANY+++K K +LKYG +A L+ GD +ERH++D D+VLFN
Sbjct: 1065 LQQCVRNGQKKWPGANYIIKKGNPLKTMLKYGNLKFIADQLQEGDIVERHIEDGDIVLFN 1124
Query: 2826 RQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELM 2647
RQPSLHK+SI+SH AKV P RTFR NEC C PYNADFDGDEMNLH+PQT EA+AEA ELM
Sbjct: 1125 RQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELM 1184
Query: 2646 NVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXX 2467
VKNNL TP++GEP++ AIQDFI+ YLL+ KD F R + ++ QT+
Sbjct: 1185 GVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGP----QTRFD 1240
Query: 2466 XXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYT---GNL--ELCSKDSYV 2302
P LWTGKQ+ +++RP+K V +NL A K + GN +L DS++
Sbjct: 1241 LPPPAVFKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACKQFKPPKGNQPRDLDPNDSWL 1300
Query: 2301 IIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSI 2122
++RNS ++ G +DKS +GS K N+FY+++RD+G AA + M RL++++ + SN GFSI
Sbjct: 1301 VVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNMGFSI 1360
Query: 2121 GIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELST 1942
GI DV PS++L++ K LV+ Y++C + I + + G L+ PGC E +T+E+ + LS
Sbjct: 1361 GITDVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSK 1420
Query: 1941 IRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSL 1762
+R AG C+ LSKYN+PL MA GSKGS IN+SQM+A VGQQ I G R DGF++R+L
Sbjct: 1421 VRQQAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTL 1480
Query: 1761 PHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKC 1582
PHF + + P +KGFV NSF+SGL P EF FH M GREGLVDTAVKTAETGYM RRL+K
Sbjct: 1481 PHFPKNARQPPSKGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKS 1540
Query: 1581 LEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHA-----KNIQ 1417
LEDL YD TVR+S +++F +G+D LDP ME K V F HA KN +
Sbjct: 1541 LEDLSTGYDDTVRNSSQGIVQFQYGDDKLDPVDMEGK-AKPVHFDRTFIHAETTTYKNEE 1599
Query: 1416 TTKEQPIPVDKLDEVLKAEIQK----KFKGKYVHFADKLSEYITQTE-----IKKSKKWQ 1264
+ ++ +E+L E K G + + D+ + Q E + +++
Sbjct: 1600 RSLSPAEIMEVCEEMLSKERAKLARYDLMGAELDYMDRSDHGVDQFESARDFLDSIQQYV 1659
Query: 1263 NGKA-----HCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKV 1099
KA G+ + +D +T + L LT+ L +FI C K
Sbjct: 1660 QTKADKLISRGGDSDPSDERTIK-------------GLNHTGKLTERTLRTFIAECLMKY 1706
Query: 1098 ARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTIST 919
+A EPG AVGA+ A SIGEP TQMTLKTFHFAGVA M+ITQGVPRIKEIINA K IST
Sbjct: 1707 KKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEIST 1766
Query: 918 PIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQL 739
P+I+ L++ + AR K RIEKT L +I Y+ E + + +L VK+N I L+L
Sbjct: 1767 PVISCELVEKRNIVAARMAKGRIEKTFLRDIIHYVRETWTGKEAYLTVKINWDTISALEL 1826
Query: 738 EVCMESISYAIATSK--VCPQMRGCKIVAHGKTMMAIRPPSTSKLSKT----------MT 595
++ + I AI + ++ +H + + P S KLSKT +
Sbjct: 1827 DLTVGKIRQAIENHRRFKSEDLKLRSTRSHIHIHIDLDPASKEKLSKTEIAATSSDPFLR 1886
Query: 594 MQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFN 415
++ LK L ++ V G P NR +I D+ K D +LLVEG R +++VG+D +T N
Sbjct: 1887 LKALKRLLPDIQVLGHPQANRAIIRTDD-KSDTNTLLVEGYGLRQCMNTVGIDGLRTRSN 1945
Query: 414 NALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLV 235
N + +VLGIEAARS II EI M + +D RH+ LLADVMTY+GEVLGITR GL
Sbjct: 1946 NVMETREVLGIEAARSTIIQEISEVM--KDMDIDPRHMQLLADVMTYKGEVLGITRFGLA 2003
Query: 234 KMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQK 67
KM+DSVL LASFEKT DHLF+A + D+I GVSECIIMG +++GTG ++++K
Sbjct: 2004 KMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEVVRK 2059
>gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1
[Gibberella zeae PH-1]
gi|42544901|gb|EAA67744.1| hypothetical protein FG09860.1 [Gibberella
zeae PH-1]
Length = 2443
Score = 1056 bits (2731), Expect = 0.0
Identities = 620/1410 (43%), Positives = 839/1410 (58%), Gaps = 53/1410 (3%)
Frame = -1
Query: 4092 NNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIG 3913
+++L D+E P +GPLD ++G DC GHFG+ L +P FH+G
Sbjct: 1038 SDRLLYDIENNRAPYRHGPLDSRLGTSSKQGRCSTCQESLKDCNGHFGHVRLPLPAFHVG 1097
Query: 3912 FFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTC 3733
+ + + +LQ ICK+C +LL + F + + P LD L R + KRI C+K TC
Sbjct: 1098 YLRFIMSILQEICKDCGRVLLDEPDRQQFLKDLRRPFLDNLRRTQICKRINEQCRKVKTC 1157
Query: 3732 SHCGLKNGTVKKAVGAVLKIAFASPVSVDELG-----------KFATMFSS----NQEVG 3598
+CG NG ++K VLK+A V+ ++ KF F+ N E+
Sbjct: 1158 PYCGSLNGQIRKI--GVLKLAHDKFVAYNKSTSIKKTPPESKIKFDNSFNEAKRENPELD 1215
Query: 3597 DHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSV 3418
H+RK L NPL V LF I D +L + E + P + +P PPVCIRPSV
Sbjct: 1216 KHLRKAMEDL-NPLRVLNLFKMISPTDCELLGLDPAEGR-PEMFIWQFLPAPPVCIRPSV 1273
Query: 3417 VSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMS 3238
+ + EDD+T KL +I+ + +++ + G+P +T+ E WE+LQ Q A+Y+NS++
Sbjct: 1274 AQD--NASNEDDITTKLADIVWVSGMIRSALQKGSPVQTIMEQWEYLQTQIAMYVNSDVP 1331
Query: 3237 GLPPDMQPK--RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPI 3064
GL QP + R F QRLKGKQGRFRGNL GKRVDFSGRTVISPDPNL IDQV VP
Sbjct: 1332 GL---QQPGFGKTTRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPE 1388
Query: 3063 HVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNK-KLLKYGKRDELAKN 2887
VA LT+PE V NIEK+RQ V NG DV PGA +++ G + LK+G R+ +A++
Sbjct: 1389 LVAKNLTYPERVQRHNIEKLRQCVKNGPDVWPGAQRVIKSDEGGYLQSLKFGNREYIARD 1448
Query: 2886 LRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGD 2707
L+ GD +ERHL+DND+VLFNRQPSLHK+SIMSH AKV P RTFR NEC C PYNADFDGD
Sbjct: 1449 LKFGDIVERHLEDNDIVLFNRQPSLHKLSIMSHLAKVRPWRTFRLNECVCGPYNADFDGD 1508
Query: 2706 EMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAE 2527
EMNLH+PQT EA+AEA LM +K+NL TP++GEP++AA QDFIT YLL+ KD F R
Sbjct: 1509 EMNLHVPQTEEARAEAINLMGIKHNLATPKNGEPVIAATQDFITAAYLLSGKDRFFDRKT 1568
Query: 2526 VYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNK 2347
++D +T P LWTGKQL +++RP+K S V +NL AK K
Sbjct: 1569 FTYLCMHMMDG----KTHLDLPPPAIIAPQSLWTGKQLFGMLMRPNKDSPVKVNLDAKCK 1624
Query: 2346 SYTGNLELCS----KDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDA 2179
+Y C D ++++RNS ++ G +DKS +G K +IFY+++RD+G D AV A
Sbjct: 1625 TYKARPGQCPDMDPNDGWLVVRNSEVMCGRMDKSTVGDGKKDSIFYVILRDFGPDEAVTA 1684
Query: 2178 MWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQ 1999
M RLA++ L+N GFSIGIGDV P E L++EK +L Y +C I+ + GKL+
Sbjct: 1685 MNRLAKLCARQLTNHGFSIGIGDVFPPESLIQEKERLAAAAYKQCDDLIETFKAGKLEKA 1744
Query: 1998 PGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACV 1819
GC +E++LE+ + LS +R AG C+ LS+ NAPL MA GSKGS +N++QM+A V
Sbjct: 1745 AGCNQEQSLENFMSGILSKVRQQAGSYCVETLSRNNAPLVMAKSGSKGSDLNVAQMVALV 1804
Query: 1818 GQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLV 1639
GQQ I G R DGF++R+LPHF + + P +KGFV NSFYSGL+PTEF FH M GREGLV
Sbjct: 1805 GQQIIGGARVADGFQDRTLPHFHKNARQPPSKGFVKNSFYSGLSPTEFIFHAMSGREGLV 1864
Query: 1638 DTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSV 1459
DTAVKTAETGYM RRL+K LEDL YD TVR+S G +++F FG D LDP ME +
Sbjct: 1865 DTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQFQFGADKLDPVDMEG-SAAP 1923
Query: 1458 VDFTHVLEHAKN--IQTTKEQPIPVD-------KLDEVLKAEIQKKFKGKYVHFADKLSE 1306
V F HA++ + T+ P + KL+ + ++K G V + S+
Sbjct: 1924 VHFERTWTHAQSLTVDNTETSMTPDEIRSFCDSKLEHERRRYVRKGLLGGEVLDYEDTSD 1983
Query: 1305 Y-ITQTE-----IKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT 1144
Y I + E +K ++ A L E ++ + A L+
Sbjct: 1984 YGIDEHEGARGFLKAIERHVEALA-SKLERVRKLAGFEGDRMIRPTAQDHADRTAKVTLS 2042
Query: 1143 KTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV 964
QL FI+LC K +A EPG AVGA+ A SIGEP TQMTLKTFHFAGVA M+ITQGV
Sbjct: 2043 TLQL--FIKLCLEKYKKAHVEPGHAVGAVGAHSIGEPGTQMTLKTFHFAGVAGMSITQGV 2100
Query: 963 PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 784
PRIKEIINA K ISTP+IT L + AR VK RIEKT + +I ++E+ + +
Sbjct: 2101 PRIKEIINASKAISTPVITCPLENNEQIEAARVVKGRIEKTYISDILRFVEDEWRTTEGN 2160
Query: 783 LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK 604
++++++ + + L + I+ AI + R + + ++ +R S +
Sbjct: 2161 VVLQIDPTALSDMHLGIGPYDIAEAICKQRKLKVQRDDLSIDGDRIIVRVRDISDPAAKR 2220
Query: 603 TMT---------------MQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTD 469
T T L+ +L NV + G R +I E+ + +++LVEG
Sbjct: 2221 TATRSKAAAAESGDMLLRANFLRRALPNVPISGYSEATRAIIQTSEQ--NTHTVLVEGYG 2278
Query: 468 FRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLA 289
R +++ GV K + NN + DVLGIEAAR+ I EI + M + +D RH+ LLA
Sbjct: 2279 LRECMTTEGVIGTKASSNNVMECRDVLGIEAARTTIAVEIGSVMG--DMNIDPRHMQLLA 2336
Query: 288 DVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGT 109
DVMTY+GEVLGITR GL KM+DSVL LASFEKT DHLFEAA + D I GVSECIIMG
Sbjct: 2337 DVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQ 2396
Query: 108 PMTVGTGTFKLMQKYD-KKAVLKQNSPIFE 22
M+VGTG F+++++ + + +K+ +FE
Sbjct: 2397 TMSVGTGAFQVVRRLGIRDSEVKKKLTLFE 2426
>gi|32405384|ref|XP_323305.1| hypothetical protein [Neurospora crassa]
gi|28917640|gb|EAA27335.1| hypothetical protein [Neurospora crassa]
Length = 1533
Score = 1046 bits (2704), Expect = 0.0
Identities = 628/1448 (43%), Positives = 851/1448 (58%), Gaps = 104/1448 (7%)
Frame = -1
Query: 4098 IFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFH 3919
+ +N LY DVE + +GPLDP++G C GHFG+ L +PVFH
Sbjct: 42 VSDNLLY-DVENGRRTFPHGPLDPRLGTSSKTGTCETCNLPLQSCAGHFGHVRLPLPVFH 100
Query: 3918 IGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGS 3739
IG+ K LQ ICK CS +LL E F + + P +D L R A+ K+I C+K
Sbjct: 101 IGYLKYIQATLQNICKTCSKVLLEEEPKAKFLKALRAPGIDNLKRSAILKKINDECRKQK 160
Query: 3738 TCSHCGLKNGTVKKAVGAVLKIAF---------ASPVSVDELGKFATMFSSNQ------E 3604
TC +CG G ++K +V+K+ + V + K A S Q +
Sbjct: 161 TCPYCGDTQGVIRKL--SVMKLTHDKFSHFNKSTAQKKVPPVAKAAFDSSFIQAKTFTPD 218
Query: 3603 VGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRP 3424
+ H +K + +PL V KLF I D +L + E + P L +P PP+CIRP
Sbjct: 219 LEKHSKKAMDDM-DPLKVLKLFKKITAEDCELLGLNPSEGR-PEMFLWQYLPAPPICIRP 276
Query: 3423 SVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSE 3244
SV E A + EDD+T KL EI+L L++ GA T+ E WE +Q+Q +Y+NS+
Sbjct: 277 SVQQE--AASNEDDITSKLSEIILYAGHLRESLLKGAALNTIMEQWEFIQLQVGMYVNSD 334
Query: 3243 MSGLPPDMQPK--RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGV 3070
+ GL QP + +R F QRLKGKQGRFRGNL GKRVDFSGRTVISPDPNL IDQV V
Sbjct: 335 VPGL---YQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAV 391
Query: 3069 PIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGK---RDE 2899
P VA LT+PE VN +NIEK+R+ V+NG V PGA ++++ G K L +G R+E
Sbjct: 392 PERVAKNLTYPERVNRNNIEKLRKCVMNGPKVWPGAQGVIKRDGGMKFNLNFGDESIREE 451
Query: 2898 LAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNAD 2719
A+ L+ GD +ERHL+D D+VLFNRQPSLHK+SIMSHRAKV P RTFR NEC CTPYNAD
Sbjct: 452 RARELKFGDVVERHLEDGDIVLFNRQPSLHKLSIMSHRAKVRPWRTFRLNECVCTPYNAD 511
Query: 2718 FDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFL 2539
FDGDEMNLHLPQT EA+AEA LM V+NNLITP++GEP++AA QDFIT YLL+ KD FL
Sbjct: 512 FDGDEMNLHLPQTEEARAEAINLMGVQNNLITPKNGEPIIAATQDFITAAYLLSSKDLFL 571
Query: 2538 PRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLT 2359
R ++ +T PVELWTGKQ+ +++RP+K S V +NL
Sbjct: 572 DRKTFTYICTQMLLG----ETHLDLPPPTIIKPVELWTGKQIFNVLMRPNKQSPVLVNLE 627
Query: 2358 AKNKSYT---GNL-ELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDA 2191
AKNK Y G L ++ D Y+++RNS ++ G +DKS +G K ++FY+++RD+G +
Sbjct: 628 AKNKVYKAKPGELPDMDIDDCYLVVRNSEVMCGRMDKSTVGGGKKNSVFYVILRDWGPEH 687
Query: 2190 AVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGK 2011
A AM RLA++ L+ RGFSIG+GDV PS+ L K +LV + Y+ C I + + G+
Sbjct: 688 AAQAMNRLAKLCARTLTLRGFSIGVGDVYPSKDLTEHKAKLVQDAYALCDDLIAQFKSGR 747
Query: 2010 LKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQM 1831
L+ PGC EETLE+ I LS +R AG C+ +LS+ N+PL MA GSKGS IN++QM
Sbjct: 748 LEKAPGCNMEETLENKISGILSKVRSQAGDYCVGHLSRNNSPLIMAKSGSKGSDINVAQM 807
Query: 1830 IACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGR 1651
+A VGQQ I G R DGF++R+L HF + + P +KGFV NSFY+GL PTEF FH + GR
Sbjct: 808 VALVGQQIIGGKRVADGFQDRTLFHFHKNARQPPSKGFVRNSFYTGLVPTEFLFHAISGR 867
Query: 1650 EGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAK 1471
EGLVDTAVKTAETGYM RRL+K LEDL YD TVR+S G++++F +G D LDPA ME
Sbjct: 868 EGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGNIVQFQYGADRLDPADMEG- 926
Query: 1470 DGSVVDFTHVLEHAKNIQTTKEQ----PIPV-----DKLDEVLKAEIQKKF-KGKYVHFA 1321
+ VDF HA+++ P + + LDE K ++K G+ +H+
Sbjct: 927 NAKPVDFERSWNHAESLTMNHNDRSLLPAEISAMCKEILDERRKWYVRKHLVTGELLHYE 986
Query: 1320 DKL-------SEYITQTEIKKSKKWQN--------------------GKAHCGNHETADL 1222
DK +I E + ++ + N G C + ADL
Sbjct: 987 DKTIAESDDHDVFIAIDEHEGARVYLNTIQAEMDKRALKLAKARKLAGLDPCLPQDNADL 1046
Query: 1221 -------KTKESCKICKNL-----EAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEP 1078
+ K++ K L E + + + +++ L F+ LC K +A EP
Sbjct: 1047 LKEFAAWEKKQNGGDIKMLDPEEEEIQQAHVDRVAKVSEATLRKFMNLCLSKFDKAKVEP 1106
Query: 1077 GTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAAL 898
G AVGA+ A SIGEP TQMTLKTFHFAGVA M+ITQGVPRIKEII A K ISTP+I+ L
Sbjct: 1107 GHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIGASKLISTPVISCEL 1166
Query: 897 LDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESI 718
+ D AR VK +IEKT + ++ Y+E+V+LPD +++K++ + + +QL + + I
Sbjct: 1167 ENNRDIKAARIVKGKIEKTYISDVITYVEDVWLPDVAKIVLKIDMQALSDMQLGIGLREI 1226
Query: 717 SYAIATSK-----------------------------VCPQMRGCKI--VAHGKTMMAIR 631
AI +K + Q + ++ A K + +
Sbjct: 1227 MVAIVKAKKLKLKVEMDDLKIGPDNTIEVIVSNDWKDLTAQKKAARVRAAAIEKGQLLLT 1286
Query: 630 PPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLS 451
+ + + LK L V + G P R +I + E + + +LVEG R+ ++
Sbjct: 1287 TSDETAADFQLRVNFLKRMLPAVPISGYPEAFRAIIQSSE--SNEHKVLVEGYGLRACMT 1344
Query: 450 SVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYR 271
+ GV K N+ + DVLGIEAAR+ I EI + M +G+D RH+ LLADVMTY+
Sbjct: 1345 TEGVIGTKCISNSIMECRDVLGIEAARTTIAKEIGSVMG--DMGIDPRHMDLLADVMTYK 1402
Query: 270 GEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGT 91
GE+LGITR+GL KM+DSVL LASFE+T DHLF+AA + D I GVSECIIMG M +GT
Sbjct: 1403 GEILGITRHGLAKMRDSVLQLASFERTPDHLFDAAAGMKTDRILGVSECIIMGQTMKIGT 1462
Query: 90 GTFKLMQK 67
G F+++++
Sbjct: 1463 GAFQVVRR 1470
>gi|38104101|gb|EAA50718.1| hypothetical protein MG04477.4
[Magnaporthe grisea 70-15]
Length = 1456
Score = 1041 bits (2691), Expect = 0.0
Identities = 633/1448 (43%), Positives = 846/1448 (57%), Gaps = 67/1448 (4%)
Frame = -1
Query: 4197 KEQFREADKALK-VVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKM 4021
KEQF DK K +KF + + + I +LY DVE P+ +GPLD ++
Sbjct: 12 KEQF--VDKVPKRFKEIKFGIQSNQDIVNQGVLEISEKQLY-DVENNRTPSRHGPLDHRL 68
Query: 4020 GVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPE 3841
G +C GHFG+ L +P FHIG+ + +LQ ICK+C+ +LLT
Sbjct: 69 GTSSKTAECQTCAQQLQNCNGHFGHVRLPLPAFHIGYLRFIQMILQNICKDCARVLLTEP 128
Query: 3840 QHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFAS 3661
+ R F ++ P +D L R + K+I C+K C +C NGT++K VLK+A
Sbjct: 129 ERRKFLLELRRPGIDNLRRTGICKKINEQCRKVKICPYCDSVNGTIRKI--GVLKLAHDK 186
Query: 3660 PVSVDELGK-----------FATMFS----SNQEVGDHVRKMKFTLLNPLFVQKLFSNIK 3526
V+ ++ F F+ S E+ H+RK L NPL V LF I
Sbjct: 187 FVTFNKSNALRKQPPVSKIVFDNSFNYAKKSVPELDKHLRKAMEDL-NPLKVLTLFKMIS 245
Query: 3525 EGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTN 3346
D +L + E + P L +P PP+CIRPSV + + EDD+T KL EI+
Sbjct: 246 PTDCELLGLDPSEGR-PEMFLWQYLPAPPICIRPSVQQDTSSN--EDDITTKLAEIVHIA 302
Query: 3345 DVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK--RAMRAFTQRLKGK 3172
+++ G P +T+ E WE LQ+Q A+Y+NSE+ GL QP + R F QRLKGK
Sbjct: 303 GLIRGALSKGHPIQTIMEQWEFLQLQIAIYVNSEVPGLG---QPGFGKMTRGFCQRLKGK 359
Query: 3171 QGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLV 2992
QGRFRGNL GKRVDFSGRTVI PDPNL IDQV +PI VA LT+PE VN NIEK+R+ V
Sbjct: 360 QGRFRGNLSGKRVDFSGRTVIGPDPNLAIDQVAIPILVAKNLTYPERVNHINIEKLRECV 419
Query: 2991 INGSDVHPGANYLVEKK-TGNKKL-LKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQP 2818
NG V PGAN +V++ G K+ LK+G R+++A LR GD +ERH++D D+VLFNRQP
Sbjct: 420 RNGPTVWPGANAVVKQDGDGEYKMNLKFGDRNDVAYRLRYGDVVERHIEDGDIVLFNRQP 479
Query: 2817 SLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVK 2638
SLHK+SIMSH KV P RTFR NECACTPYNADFDGDEMNLH+PQT EA+ EA LM VK
Sbjct: 480 SLHKLSIMSHFVKVRPWRTFRLNECACTPYNADFDGDEMNLHVPQTEEARTEAMTLMGVK 539
Query: 2637 NNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAE-VYRFAAALIDASAKKQTKXXXX 2461
NL TP++GEP++AA QDFIT YL++ KD F R Y L+D
Sbjct: 540 YNLATPKNGEPIIAATQDFITAAYLISLKDVFYDRKTFTYVCQHMLMDGKDYLDLPPPAI 599
Query: 2460 XXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL----ELCSKDSYVIIR 2293
LWTGKQ+ +++RP+K S V +NL AK + Y ++C D +++IR
Sbjct: 600 LKPRA----LWTGKQVFSMMLRPNKESPVKINLDAKCREYKPRPGECPDMCPNDGWLVIR 655
Query: 2292 NSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIG 2113
NS ++ G +DKS++G K +IFY+++RD+G D AV M RLA++ L NRGFSIG+G
Sbjct: 656 NSEVMCGKMDKSIVGGGKKDSIFYVILRDFGPDHAVIVMSRLAKLCARTLGNRGFSIGVG 715
Query: 2112 DVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRD 1933
DV P+ +L EK LV N +C + I+ + GKL+ GC E+TLE+ I LS +R
Sbjct: 716 DVFPTMELRAEKEVLVANANRQCDELIETFKAGKLQKAAGCDLEQTLENSISGLLSKVRQ 775
Query: 1932 HAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHF 1753
AG C+ LS+ NAPL MA GSKGS IN++QM+A VGQQ I G R PDGF++RSLPHF
Sbjct: 776 LAGAKCVETLSRNNAPLVMAKSGSKGSEINVAQMVALVGQQIIGGQRVPDGFQDRSLPHF 835
Query: 1752 ERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLED 1573
+ + P +KGFVANSFYSGL PTEF FH + GREGLVDTAVKTAETGYM RRL+K LED
Sbjct: 836 HKNSRQPPSKGFVANSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895
Query: 1572 LCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQP-- 1399
L YD TVR+S G +++F FG D LDP ME V F HA+ + ++
Sbjct: 896 LSTQYDDTVRTSGGGIVQFQFGADKLDPVDMEG-SAVPVHFDRTWTHAETLSWDNDENSL 954
Query: 1398 IPVDKL---DEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKK------WQNGKAHC 1246
+P + L D+V++ + Q+ + V K+ +Y Q ++ + W+ ++
Sbjct: 955 LPWEVLQVCDQVIETQRQRYVRRDLVD-RSKILDYEDQRDLSIDEHESARGFWKTVYSYV 1013
Query: 1245 GNHET---------------ADLKTKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELC 1111
D +T + K A + + ++ T L F++LC
Sbjct: 1014 EGRANRLEKIRKRIGLSPGGVDDRTADDSKADMQRVAQVNRV---AKISHTTLIKFLKLC 1070
Query: 1110 YYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVK 931
K RA TEPG AVGA+ A SIGEP TQMTLKTFHFAGVA M+ITQGVPRIKEIINA K
Sbjct: 1071 QEKHERAKTEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASK 1130
Query: 930 TISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIR 751
ISTP+IT L + AR VK RIEKT + ++ +IE+ + D ++++++ ++
Sbjct: 1131 LISTPVITCPLQNNKQIEAARVVKGRIEKTYVSDVLRFIEDEWKADTGSVVLQIDMGALQ 1190
Query: 750 LLQLEVCMESISYAIATSKVCP--------QMRGCKIVAH------GKTMMAIRPPSTSK 613
+ L + + I+ AI K +IV A R +T++
Sbjct: 1191 DMHLGIGLPEIAEAICKYKKLKIEPDDLRLSSDSVEIVVRNTWADTAAAKKAARSRTTTE 1250
Query: 612 LSKTMTMQI--LKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGV 439
S + +++ L+ L V + G P R +I EK + + +LVEG R +++ GV
Sbjct: 1251 DSPDLLLRVNHLRRVLPQVPISGYPEAARAIIQTSEK--NEHKVLVEGYGLRECMTTEGV 1308
Query: 438 DPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVL 259
NN + D+LGIEAARS I EI + M +G+D RH+ LLADVMTY+G+VL
Sbjct: 1309 IGTSVISNNVMEARDILGIEAARSTIATEIGSVMG--DMGIDPRHMQLLADVMTYKGDVL 1366
Query: 258 GITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFK 79
GITR GL KM+DSVL LASFEKT DHLF AA + D I GVSECIIMG M+VGTG K
Sbjct: 1367 GITRFGLSKMRDSVLQLASFEKTPDHLFAAAAGMKTDKIEGVSECIIMGQTMSVGTGASK 1426
Query: 78 LMQKYDKK 55
+++ + K
Sbjct: 1427 IVRALNLK 1434
>gi|8777343|dbj|BAA96933.1| DNA-directed RNA polymerase II largest
chain [Arabidopsis thaliana]
Length = 1383
Score = 1016 bits (2626), Expect = 0.0
Identities = 595/1406 (42%), Positives = 833/1406 (58%), Gaps = 21/1406 (1%)
Frame = -1
Query: 4197 KEQFREADKALKVVGVKFAP-GDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKM 4021
K+ + E LK+ + F+ D E M+ A V ++N LY+ +P G LDP+M
Sbjct: 11 KKPYIEDVGPLKIKSINFSVLSDLEVMK-AAEVQVWNIGLYDH---SFKPYENGLLDPRM 66
Query: 4020 GVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPE 3841
G +C GH+GY LD+PV+++G+F + +L+CICK CS++LL +
Sbjct: 67 GPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEK 126
Query: 3840 QHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGS-----TCSHCGLKNGTVKKAVGAVLK 3676
+ R++ NP ++ L + L K +V C + TC CG NG VKK + A
Sbjct: 127 LYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKK-IAAQFG 185
Query: 3675 IAFA---SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVL 3505
I + S + E+ + + S ++ + + + +L+P V LF + + D +L
Sbjct: 186 IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTY-VLDPNLVLGLFKRMSDKDCELL 244
Query: 3504 MVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHK 3325
+ P +L++T M VPP+ IRPSV+ + E+D+T +L +I+L N L K
Sbjct: 245 YIAY----RPENLIITCMLVPPLSIRPSVMIG-GIQSNENDLTARLKQIILGNASLHKIL 299
Query: 3324 RDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLC 3145
S + W+ +QI+ A YINSE+ G + + + QRLKGK GRFR NL
Sbjct: 300 SQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLS 358
Query: 3144 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 2965
GKRV+F+GRTVISPDPNL+I +VG+PI +A LTFPE V+ NIEK+RQ V NG + +PG
Sbjct: 359 GKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPG 418
Query: 2964 ANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHR 2785
A V G+ + L R +A L +G ++RHL + DVVLFNRQPSLH++SIM HR
Sbjct: 419 ARN-VRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHR 477
Query: 2784 AKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEP 2605
A++MP RT RFNE C PYNADFDGDEMN+H+PQT EA+ EA LM V+NNL TP++GE
Sbjct: 478 ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEI 537
Query: 2604 LVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWT 2425
LVA+ QDF+T +L+T KDTF RA + + D P+ELWT
Sbjct: 538 LVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDG----MDSIDLPTPTILKPIELWT 593
Query: 2424 GKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLE-----LCSKDSYVIIRNSVLLAGCLDK 2260
GKQ+ +++RP+ V + L K K++ +C D +V RNS L++G L K
Sbjct: 594 GKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGK 653
Query: 2259 SLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLRE 2080
+ LG+ +K ++ +L+RDY AA M RLA+++ ++ GFSIGI DV+P E+L +E
Sbjct: 654 ATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKE 713
Query: 2079 KGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLS 1900
+ + GY +C + I+E G L+ + G ++LE+ I L+TIR+ G+ C+ L
Sbjct: 714 RKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLH 773
Query: 1899 KYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKG 1720
N+PL M+ CGSKGS INISQM+ACVGQQ ++GHR PDGF +RSLPHF R K+P AKG
Sbjct: 774 WRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKG 833
Query: 1719 FVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRS 1540
FVANSFYSGLT TEFFFHTMGGREGLVDTAVKTA TGYM RRL+K LEDL YD TVR+
Sbjct: 834 FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRN 893
Query: 1539 SVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAE 1360
+ G +++F +G+DG+DPA+ME KDG+ ++F + +Q T P + E
Sbjct: 894 ASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLF---LKVQATCP---PRSHHTYLSSEE 947
Query: 1359 IQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEA 1180
+ +KF+ + V DK S T +K +++ + +K+ ++
Sbjct: 948 LSQKFEEELVRH-DK-SRVCTDAFVKSLREFVS---------LLGVKSASPPQVLYKASG 996
Query: 1179 YKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHF 1000
K +L L + F+++C ++ E GTA+G I A SIGEP TQMTLKTFHF
Sbjct: 997 QKYEILP---LIYINMQVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHF 1053
Query: 999 AGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICD 820
AGVASMNITQGVPRI EIINA K ISTP+I+A L +P + + AR VK RIEKTTLG++ +
Sbjct: 1054 AGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAE 1113
Query: 819 YIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAI-ATSKVCPQMRGCKIVAHGKTM 643
IE + + + L++K I L + S+ +I T ++ +++ G +
Sbjct: 1114 SIEVLMTSTSASVRIILDNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVLDTGLDI 1173
Query: 642 MAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKG------DFYSLLV 481
P K + LK L N++V GI +V R V+ D K + L V
Sbjct: 1174 ----TPVVDKSRAHFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKSKQIDGKTKWKLFV 1229
Query: 480 EGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHV 301
EGT+ +V+ + G++ R T NN + V+ LGIEAAR+ II+EI M HG+ +D RH+
Sbjct: 1230 EGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHM 1289
Query: 300 MLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECI 121
MLLADVMTYRGEVLGI R G+ KM SVL+ ASFE+T DHLF AA + D I GV+EC+
Sbjct: 1290 MLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECV 1349
Query: 120 IMGTPMTVGTGTFKLMQKYDKKAVLK 43
IMG PM +GTG K++Q+ D LK
Sbjct: 1350 IMGIPMKLGTGILKVLQRTDDLPKLK 1375
>gi|19074431|ref|NP_585937.1| DNA-DIRECTED RNA POLYMERASE III 160 kDa
SUBUNIT (LARGEST SUBUNIT) [Encephalitozoon cuniculi]
gi|19069073|emb|CAD25541.1| DNA-DIRECTED RNA POLYMERASE III 160 kDa
SUBUNIT (LARGEST SUBUNIT) [Encephalitozoon cuniculi
GB-M1]
Length = 1349
Score = 959 bits (2480), Expect = 0.0
Identities = 581/1338 (43%), Positives = 787/1338 (58%), Gaps = 12/1338 (0%)
Frame = -1
Query: 4053 PANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCIC 3874
P GPLD ++GV C+GHFG L +PVF++G K TI L C+C
Sbjct: 81 PLPNGPLDLRLGVGNKKDKCATCGEGLATCIGHFGEVRLVLPVFNVGLIKNTISTLNCLC 140
Query: 3873 KNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKA 3694
K+C SILL E+ +++ ++ + + K + +RIVA CKK + C C +NG +KK
Sbjct: 141 KSCGSILLN-EKKKIYFKKKLRESSGGNDTKLILRRIVAECKKVNVCFVCSFRNGQIKKT 199
Query: 3693 VGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDI 3514
G F V++L K S G H + +NPL +F+ +KE D
Sbjct: 200 FG------FRIVHEVEDLEKRKKDRGSKGSDGVHSSCCEE--INPLVALNVFNMMKEDDY 251
Query: 3513 PVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLK 3334
+L G + P+ L++ + VPP CIRPSV + + GT EDD+T+K+ EI+ TN VL+
Sbjct: 252 ELL----GFLESPSRLIIQNVIVPPSCIRPSVSMDDE-GTNEDDITIKISEIVHTNKVLR 306
Query: 3333 KHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRG 3154
+ G P + E W+HLQ+QCAL INSE LP P + +R QRLKGK GRFR
Sbjct: 307 EGIEKGNPLNLINEDWDHLQLQCALLINSE---LPQIGIPGQPVRGIVQRLKGKNGRFRC 363
Query: 3153 NLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDV 2974
NL GKRVDFSGRTVISPDPNL I++VG+P +A LT E V N K++ LV+NG +
Sbjct: 364 NLSGKRVDFSGRTVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPEN 423
Query: 2973 HPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIM 2794
+PGANY+V +K K+ L YGKRD L+ G+ +ERHL D D+VLFNRQPSLH++SIM
Sbjct: 424 YPGANYVVGEKF--KRFLMYGKRDI---ELKYGEVVERHLMDGDMVLFNRQPSLHRMSIM 478
Query: 2793 SHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRS 2614
SH+ +V +T RFNEC CTPYNADFDGDEMN+H+PQT +A+AEAS LM+V NN++TPR
Sbjct: 479 SHKVRVHRNKTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSNNIVTPRH 538
Query: 2613 GEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVE 2434
GEP+VAA QDFITG YL+T KDTF R + + +A + PVE
Sbjct: 539 GEPIVAATQDFITGLYLITGKDTFFDRERFGQLVSYFSEARVGVKP-------AIRKPVE 591
Query: 2433 LWTGKQLIELIIRPDKGSDVSLN---------LTAKNKSYTGNLELCSKDSYVIIRNSVL 2281
L+TGKQLIE++I+ + + N L KN+S+ + + D V I ++
Sbjct: 592 LFTGKQLIEVLIKDSFTASIERNAVTGNMAVSLVGKNRSFKTHDD--PNDGSVAILDNSY 649
Query: 2280 LAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRP 2101
G LDKS++G +K + + AAV AM + ++ +L GFSIG+ DV+P
Sbjct: 650 YFGRLDKSIVGGENKRDSLIYAIMKVSSMAAVRAMNSITKLCSRYLGETGFSIGLDDVQP 709
Query: 2100 SEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQ 1921
L ++K +V GY++C I E + K +A EE LE I L+ IR+ G
Sbjct: 710 GPILRQKKEMVVRRGYAECESKILEYSK-KPEAN-----EEMLEMEISSILNRIREECGS 763
Query: 1920 VCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKK 1741
+C++ L N+P M CGSKGS IN+SQM+ACVGQQ +SG R P+G +ER LPHF+R
Sbjct: 764 ICIKELGIRNSPNIMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCLPHFKRGS 823
Query: 1740 KTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCAS 1561
+TPE+KGFV NSF+ GLT EFFFH + GREGLVDTAVKTAETGYMQRRL+K LEDL
Sbjct: 824 RTPESKGFVLNSFFDGLTSPEFFFHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLSIQ 883
Query: 1560 YDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIP---V 1390
YDG+VR+S +V++F +GED +DPAM E + ++ V AK+ P P
Sbjct: 884 YDGSVRNSNMEVVQFAYGEDQIDPAMSEGDES--INLEQVFLRAKSSFLHSLGPSPDLYS 941
Query: 1389 DKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKE 1210
LDE +I ++ K F E+I S +++K
Sbjct: 942 SWLDEHGTIDILRRLTPKGYPF-----EHIANRRFVGSL-------------LRFMESKH 983
Query: 1209 SCKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPS 1030
K C Y+ L+K + +F + K+ I EPGT VGAIA SIGEP
Sbjct: 984 EDKFCFGGTFYR------YFLSKDFIETFFSMVSQKMMNLIVEPGTTVGAIAGQSIGEPG 1037
Query: 1029 TQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARI 850
TQMTLKTFHFAGVASMNIT GVPR+KEIINAV ISTPII A L DP+D +K R+
Sbjct: 1038 TQMTLKTFHFAGVASMNITLGVPRLKEIINAVCNISTPIINAELDDPHDLFRTEVIKGRL 1097
Query: 849 EKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGC 670
++ +L ++C + EV D+ FL ++++ + + L+L + + I K+
Sbjct: 1098 DRISLKDVCSSLTEVISKDEIFLDIRVDLESLSRLKLNLDIHKI------EKLLNNHDQV 1151
Query: 669 KIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYS 490
++V ++I+ + +Q +K L N + G P VNR +I++ YS
Sbjct: 1152 RVVNENTLRVSIKKITDQSY---FNLQRIKKKLLNTKICGAPQVNRVIINSSR---GLYS 1205
Query: 489 LLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDR 310
L++EG +V++ GV T N+ V +VLGIEAAR+ II+EI T+ HGI +D
Sbjct: 1206 LVIEGRGLLNVINIDGVKAINTTSNSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDP 1265
Query: 309 RHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVS 130
RH+MLLAD MTYRGEV GITR G+ KM S L+LASFE+T D+LFEAA S+ D I GVS
Sbjct: 1266 RHIMLLADTMTYRGEVFGITRFGISKMSRSTLMLASFEQTSDYLFEAAVQSKSDEICGVS 1325
Query: 129 ECIIMGTPMTVGTGTFKL 76
E II+G P+ +GTG+ L
Sbjct: 1326 ESIILGIPICIGTGSMDL 1343
>gi|15238597|ref|NP_200812.1| DNA-directed RNA polymerase, putative
[Arabidopsis thaliana]
Length = 1328
Score = 927 bits (2396), Expect = 0.0
Identities = 573/1413 (40%), Positives = 797/1413 (55%), Gaps = 28/1413 (1%)
Frame = -1
Query: 4197 KEQFREADKALKVVGVKFAP-GDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKM 4021
K+ + E LK+ + F+ D E M+ A V ++N LY+ +P G LDP+M
Sbjct: 11 KKPYIEDVGPLKIKSINFSVLSDLEVMK-AAEVQVWNIGLYDH---SFKPYENGLLDPRM 66
Query: 4020 GVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPE 3841
G +C GH+GY LD+PV+++G+F + +L+CICK CS++LL +
Sbjct: 67 GPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEK 126
Query: 3840 QHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGS-----TCSHCGLKNGTVKKAVGAVLK 3676
+ R++ NP ++ L + L K +V C + TC CG NG VKK + A
Sbjct: 127 LYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKK-IAAQFG 185
Query: 3675 IAFA---SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVL 3505
I + S + E+ + + S ++ + + + +L+P V LF + + D +L
Sbjct: 186 IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTY-VLDPNLVLGLFKRMSDKDCELL 244
Query: 3504 MVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHK 3325
+ P +L++T M VPP+ IRPSV+ + E+D+T +L +I+L N L K
Sbjct: 245 YIAY----RPENLIITCMLVPPLSIRPSVMIG-GIQSNENDLTARLKQIILGNASLHKIL 299
Query: 3324 RDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLC 3145
S + W+ +QI+ A YINSE+ G + + + QRLKGK GRFR NL
Sbjct: 300 SQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLS 358
Query: 3144 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 2965
GKRV+F+GRTVISPDPNL+I +VG+PI +A LTFPE V+ NIEK+RQ V NG + +PG
Sbjct: 359 GKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPG 418
Query: 2964 ANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHR 2785
A V G+ + L R +A L +G ++RHL + DVVLFNRQPSLH++SIM HR
Sbjct: 419 ARN-VRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHR 477
Query: 2784 AKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEP 2605
A++MP RT RFNE C PYNADFDGDEMN+H+PQT EA+ EA LM
Sbjct: 478 ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMG------------- 524
Query: 2604 LVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWT 2425
DTF RA + + D P+ELWT
Sbjct: 525 ------------------DTFYDRAAFSLICSYMGDG----MDSIDLPTPTILKPIELWT 562
Query: 2424 GKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLE-----LCSKDSYVIIRNSVLLAGCLDK 2260
GKQ+ +++RP+ V + L K K++ +C D +V RNS L++G L K
Sbjct: 563 GKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGK 622
Query: 2259 SLL-------GSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRP 2101
+ L G+ +K ++ +L+RDY AA M RLA+++ ++ GFSIGI DV+P
Sbjct: 623 ATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQP 682
Query: 2100 SEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQ 1921
E+L +E+ + GY +C + I+E G L+ + G ++LE+ I L+TIR+ G+
Sbjct: 683 GEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGK 742
Query: 1920 VCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKK 1741
C+ L N+PL M+ CGSKGS INISQM+ACVGQQ ++GHR PDGF +RSLPHF R
Sbjct: 743 ACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMS 802
Query: 1740 KTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCAS 1561
K+P AKGFVANSFYSGLT TEFFFHTMGGREGLVDTAVKTA TGYM RRL+K LEDL
Sbjct: 803 KSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVH 862
Query: 1560 YDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKL 1381
YD TVR++ G +++F +G+DG+DPA+ME KDG+ ++F + +Q T P
Sbjct: 863 YDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLF---LKVQATCP---PRSHH 916
Query: 1380 DEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCK 1201
+ E+ +KF+ + V DK S T +K +++ + +K+ +
Sbjct: 917 TYLSSEELSQKFEEELVRH-DK-SRVCTDAFVKSLREFVS---------LLGVKSASPPQ 965
Query: 1200 ICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQM 1021
+ YK S + + L E GTA+G I A SIGEP TQM
Sbjct: 966 V-----LYKASGVTDKQL---------------------EAGTAIGTIGAQSIGEPGTQM 999
Query: 1020 TLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKT 841
TLKTFHFAGVASMNITQGVPRI EIINA K ISTP+I+A L +P + + AR VK RIEKT
Sbjct: 1000 TLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRIEKT 1059
Query: 840 TLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAI-ATSKVCPQMRGCKI 664
TLG++ + IE + + + L++K I L + S+ +I T ++ ++
Sbjct: 1060 TLGQVAESIEVLMTSTSASVRIILDNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRV 1119
Query: 663 VAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKG------ 502
+ G + P K + LK GI +V R V+ D K
Sbjct: 1120 LDTGLDI----TPVVDKSRAHFNLHNLK--------NGIKTVERVVVAEDMDKSKQIDGK 1167
Query: 501 DFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGI 322
+ L VEGT+ +V+ + G++ R T NN + V+ LGIEAAR+ II+EI M HG+
Sbjct: 1168 TKWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGM 1227
Query: 321 GLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVI 142
+D RH+MLLADVMTYRGEVLGI R G+ KM SVL+ ASFE+T DHLF AA + D I
Sbjct: 1228 SIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNI 1287
Query: 141 HGVSECIIMGTPMTVGTGTFKLMQKYDKKAVLK 43
GV+EC+IMG PM +GTG K++Q+ D LK
Sbjct: 1288 EGVTECVIMGIPMKLGTGILKVLQRTDDLPKLK 1320
>gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III
subunit, probable [Cryptosporidium parvum]
Length = 1907
Score = 732 bits (1890), Expect = 0.0
Identities = 401/933 (42%), Positives = 566/933 (59%), Gaps = 9/933 (0%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
+ KE K + V+F+ + + ++AH+ + + ++Y + P G LD +
Sbjct: 59 LSKENVVNVFKRRNIEAVEFSAMGKDEIARSAHMEVLHREIYRPMTNI--PLQGGVLDSR 116
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
+G C GH+GY DL PVFH+G+FK +L CICK+C + LL
Sbjct: 117 LGAHRADAQCSSCGGTLKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSCGAFLLKG 176
Query: 3843 EQHRV-FSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF 3667
E+ R +R + ++ + +R K +V CKK TC C + G +++ + L
Sbjct: 177 EEKRQHLARLKQSYSIAHSYRLQFRK-LVERCKKVKTCPRCMSQQGQLRRTIRPTLDQFM 235
Query: 3666 ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGE 3487
++ GK + V D L P+FVQ L + D+ +L E
Sbjct: 236 KLTHTIKVDGK--------EYVED---------LTPIFVQTLLERVPYQDLDIL-----E 273
Query: 3486 EKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPS 3307
P +LL++R+PVPP CIRPSV ++G+ EDD+T+ L EI N+++K + G +
Sbjct: 274 TFKPGNLLISRLPVPPNCIRPSVTMG-ESGSNEDDLTVILSEITDLNNIIKSQMKSGFQT 332
Query: 3306 KTLFETWEHLQIQCALYINSEMSGLPPDMQPK---RAMRAFTQRLKGKQGRFRGNLCGKR 3136
L WE LQ+QC IN++ G+ + K +A R QRLKGK+GRFRGNL GKR
Sbjct: 333 FQLLGNWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKR 392
Query: 3135 VDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANY 2956
VDFSGRTVISPDPN+ +D+V VP+ +A LT+PE VNA NI+ +R+ V+NG D+ PGA Y
Sbjct: 393 VDFSGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGACY 452
Query: 2955 LVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKV 2776
V K G+K L+Y R +++ L +GD +ERH+ D+VLFNRQPSLH++SIMSH+ V
Sbjct: 453 -VYKSNGSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVV 511
Query: 2775 MPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVA 2596
MP RTFRFNECAC PYNADFDGDEMNLHLPQ A++E+ LM + NNL+TPR+GEPL+A
Sbjct: 512 MPWRTFRFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNGEPLIA 571
Query: 2595 AIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQ 2416
A QDF+ G Y+LT +D FL R + ++ + Q PVELWTGKQ
Sbjct: 572 ATQDFLLGMYVLTGRDIFLTRDQFSQYCCHFSNG----QIPMELPPPTILKPVELWTGKQ 627
Query: 2415 LIELIIRPDKGS----DVSLNLTAKNKSYTGNL-ELCSKDSYVIIRNSVLLAGCLDKSLL 2251
+ +I+RP+ DVS L ++ +L +LC + YV++R+S LLAG + K +L
Sbjct: 628 VFNMILRPNSNEKERIDVSFELKERDYDSKSDLKDLCPNEGYVVVRHSELLAGAIGKKVL 687
Query: 2250 GSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQ 2071
G SK +F+ ++ + + + M R++R +L+N+G +IGI DV P+ +LL K
Sbjct: 688 GGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYLANKGMTIGIDDVTPNAELLVAKKN 747
Query: 2070 LVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYN 1891
L+++GY + I E+GKL PG + E+TLE + + L IR+ AG+ +L N
Sbjct: 748 LLEDGYQRVQDEINSYEKGKLTPHPGLSLEDTLELKVKKILDDIRNEAGKASHISLPPSN 807
Query: 1890 APLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVA 1711
PL M + G+KG INI+QM+ACVGQQ ++G R +GF R+LPHF+ ++GFV
Sbjct: 808 KPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVG 867
Query: 1710 NSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVG 1531
NSF+SGL P EFFFHTM GREGLVDTAVKTAETGYMQRRLVK LEDLC YD TVR+S G
Sbjct: 868 NSFFSGLQPDEFFFHTMSGREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDG 927
Query: 1530 DVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEH 1432
+I+F++G+DGL+P +ME K +V+F + +H
Sbjct: 928 QIIQFIYGDDGLNPMLMEEK-LELVNFGKLFKH 959
Score = 291 bits (746), Expect = 7e-77
Identities = 177/393 (45%), Positives = 241/393 (61%), Gaps = 34/393 (8%)
Frame = -1
Query: 1149 LTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQ 970
+T QL FI+ + K +AITEPG AVGAIAA SIGEP TQMTLKTFHFAGVASMN+T
Sbjct: 1473 ITIRQLYEFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTL 1532
Query: 969 GVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDD 790
GVPRIKEIINA I TPII A L + D + A+ VK I KT L E+ IEE+Y P+
Sbjct: 1533 GVPRIKEIINAATKILTPIIEAKLENDSDFNYAQIVKGSIVKTLLNEVVSDIEELYSPNG 1592
Query: 789 YFLLVKLNSKRIRLLQLEVCMESISYAIAT----SKVCPQMRGCKIVAHGKTMMAI---- 634
F+ + LN + I+ L++ ++ +I + SK+ ++ +++ K + I
Sbjct: 1593 VFININLNEETIKGHYLDINAYTVRDSIVSHGPISKIKLKLEDIQVLDLWKLSILIGGGI 1652
Query: 633 -RPPSTSK--------------LSKTMTM----QILKYSLANVVVKGIPSVNRCVIHADE 511
+ S+S + TM + Q+LK L NVVV GIP + R VI D+
Sbjct: 1653 SQIGSSSNNINGTGNVNTLNTGIGNTMNVYFQTQLLKKGLQNVVVSGIPGIKRSVIRQDD 1712
Query: 510 K-------KGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINE 352
K K YSL VEG ++ G+ T N+ + V +VLGIEAAR II E
Sbjct: 1713 KEDPITGEKRKCYSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARKVIIQE 1772
Query: 351 IIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFE 172
+ MDA+ + +D RH+ LLAD+MT+RG+VLGI+R G+ KM+ S L+LASFE+T +HLFE
Sbjct: 1773 VQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEETNEHLFE 1832
Query: 171 AAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLM 73
AAF ++ D + GVSEC+IMG P+ +GTG+F ++
Sbjct: 1833 AAFQNRVDPVFGVSECVIMGKPIKIGTGSFDIL 1865
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit
[Acanthamoeba castellanii]
Length = 1569
Score = 732 bits (1890), Expect = 0.0
Identities = 499/1435 (34%), Positives = 760/1435 (52%), Gaps = 131/1435 (9%)
Frame = -1
Query: 3969 DCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYL 3790
+C GHFG+ +L PVF+IGF +++L+ +C +CS +L+ Q ++ N
Sbjct: 1 ECPGHFGHLELAKPVFNIGFLTTVLKILRSVCFHCSKLLVDEAQ------ELKNVK---- 50
Query: 3789 HRKALHKRIVAACKKGSTCSHCGLKNGT---------------VKKAVGAVLKIAFASPV 3655
HR A R+ K + C G GT VKK+ G F +
Sbjct: 51 HRFA---RVYTLAKTKTICEG-GEDTGTDKEQGDSTDPKEKKEVKKSHGGCGN--FQPKI 104
Query: 3654 SVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHP 3475
+ D + A + VGD K LL V + I + D + M + P
Sbjct: 105 TKDGMKIMAEF----KNVGDDPNVEKKQLLTAEKVHAILKLISDEDC-LAMGFDPKWARP 159
Query: 3474 NDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLF 3295
+ +++T MP+PP +RPS+ + A EDD+T KL +I+ N L+K + +GA + +
Sbjct: 160 DWMIITIMPIPPPPVRPSITMD-SAARGEDDLTHKLADIIKANANLRKQEANGAAAHIIS 218
Query: 3294 ETWEHLQIQCALYINSEMSGLPPDM--QPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSG 3121
+ E LQ A +I++E+ G P RA+++ QRL+GK+GR RGNL GKRVDFS
Sbjct: 219 QFQELLQYHIATFIDNEIPGFPQATVRSGSRALKSLKQRLRGKEGRIRGNLMGKRVDFSA 278
Query: 3120 RTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKK 2941
RTVI+ DPN+ ID+VGVP +A+ LT+PE+V NI+KM +L+ NG HPGA Y++ +
Sbjct: 279 RTVITGDPNISIDEVGVPRSIALNLTYPELVTPFNIDKMYELIRNGPTEHPGAKYII-RD 337
Query: 2940 TGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRT 2761
G + L++ ++ +L G +ERH+ D DV++FNRQPSLHK+S+M H+ K+MP T
Sbjct: 338 DGQRLDLRFARKAS-DLHLEYGYKVERHIQDGDVIIFNRQPSLHKMSMMGHKVKIMPYST 396
Query: 2760 FRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDF 2581
FR N TPYNADFDGDEMN+H+PQT A+AE ELM V ++T +S +P++ +QD
Sbjct: 397 FRLNLSVTTPYNADFDGDEMNMHVPQTPGARAEVIELMMVPKQIVTAQSNKPVIGIVQDT 456
Query: 2580 ITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELI 2401
+ GG LLT +DTF+ + + L T +LWTGKQ+ LI
Sbjct: 457 LLGGCLLTQRDTFIEKDVMMNILMWLESWDGTVPTPTILKPK------QLWTGKQVFSLI 510
Query: 2400 IRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFY 2221
I P + V+ + + S+T D+ V+I L++G L+K LG+S K ++ +
Sbjct: 511 I-PRNTNFVNADDEEPDMSFT--------DNKVLIEEGELVSGILNKKTLGTSHK-SLVH 560
Query: 2220 MLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCS 2041
++ ++G + + ++ + +L + GFS+G+GD E+ L + Q + +
Sbjct: 561 VIWNEHGSEVCKHFLNQVQHVVNYWLLHHGFSVGVGDTIADEETLAKITQTIRKAKDEVK 620
Query: 2040 QYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGS 1861
+ E ++G+L+ QPG T E+ E +I + L+ RD AG ++L + N M + GS
Sbjct: 621 ERQLEAQQGQLERQPGRTMMESFEFVINQILNKARDDAGNSAQKSLRRSNNFKAMVIAGS 680
Query: 1860 KGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPT 1681
KGS INISQ++ACVGQQ + G R P F +R+LPHF + PE++GFV NS+ GLTP
Sbjct: 681 KGSAINISQVLACVGQQNVEGKRIPFCFRDRTLPHFVKDDFGPESRGFVENSYLRGLTPQ 740
Query: 1680 EFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGED 1501
EFFFH MGGREGL+DTAVKTAETGY+QRRLVK LED+ YD TVR+S+GDVI+F++GED
Sbjct: 741 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDYTVRNSLGDVIQFLYGED 800
Query: 1500 GLD---------PAMMEAKDGSVVDFTHVLEH------------AKNIQTTKEQPIPVDK 1384
G+D A+ + +G V+ + H + A I + E+ +DK
Sbjct: 801 GMDGQTVETQPLDALKMSNEGVVLKYQHDYDSPSWGEGWIDPVIADAIANSPEKKRILDK 860
Query: 1383 LDEVLKAEIQKKFKGKYVHFADK--LSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKE 1210
E + A+ + + ++ D+ L +T+ + K + H G + +DL +
Sbjct: 861 EFEQILADRRLLREKIFLAGDDRWPLPVNLTRMILNAQKIF-----HLGPKKVSDL---D 912
Query: 1209 SCKICKNL------------------EAYKTSLLANSCLTKTQLCSFIELCYYKV----- 1099
C+I ++L EA ++L S L + L S L Y++
Sbjct: 913 PCQIVEDLGNLIERLVVIPGQDDISKEAQANAILLFSILLRFTLASRRVLQEYRLDQISW 972
Query: 1098 -----------ARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIK 952
+++ +PG +GA+AA SIGEP+TQMTL TFHFAGV++ N+T GVPR+K
Sbjct: 973 DWLLGEITDRFYKSLCDPGEMIGALAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLK 1032
Query: 951 EIINAVKTISTPIITAALLDPY---DESLARRVKARIEKTTLGEICDYIEEVYLPDD--- 790
E+IN KTI TP +T L+P+ D A+ V+ ++ TTL ++ E Y PD
Sbjct: 1033 ELINIAKTIKTPSLT-VYLEPHCSRDHEAAKNVQCSLQHTTLRDVTAATEIFYDPDPVNT 1091
Query: 789 -----------YFLL--VKLNSKRIR--LLQLEVCMESISYAIATSKVCPQMRGCKIVAH 655
YFL+ ++N+ + LL++E+ E ++ +K+ Q +I A
Sbjct: 1092 VITEDQDFVRAYFLMPEEEINTSNLSPWLLRIELNREKMT----DTKLSMQEIAERIHAD 1147
Query: 654 --------------GKTMMAIR---------PPSTSKL--SKTMTMQILKYSLANVVVKG 550
K ++ IR P + QI L + +KG
Sbjct: 1148 FGGDLNCIYNDDNADKLILRIRINNDEENKAPDQEGSVGDDDVFLKQIESNMLTEMDLKG 1207
Query: 549 IPSVNRCVIHADEKK------GDFYS-----LLVEGTDFRSVLSSVGVDPRKTNFNNALV 403
I + + I D+ K G++ L EGT+ +V+S VD +T NN +
Sbjct: 1208 IEGIKKVFIREDKNKVAIDARGEYTKANELVLDTEGTNLLAVMSHPDVDHTRTTSNNIIE 1267
Query: 402 VADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKD 223
+VLGIEA R+ ++ E+ + G ++ RH+ +LADVMTYRG ++ ITR+G+ +++
Sbjct: 1268 TIEVLGIEAVRNALLRELRNVISFDGAYVNYRHLAILADVMTYRGHLMAITRHGINRVET 1327
Query: 222 SVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKYDK 58
L+ SFE+T D L EAA FS+ D + GVSE I++G +GTG F L K
Sbjct: 1328 GCLMRCSFEETADILLEAATFSELDPLSGVSENILLGQLPPLGTGCFDLFLNESK 1382
>gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 subunit
[Cryptosporidium parvum]
Length = 1871
Score = 732 bits (1890), Expect = 0.0
Identities = 401/933 (42%), Positives = 566/933 (59%), Gaps = 9/933 (0%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
+ KE K + V+F+ + + ++AH+ + + ++Y + P G LD +
Sbjct: 23 LSKENVVNVFKRRNIEAVEFSAMGKDEIARSAHMEVLHREIYRPMTNI--PLQGGVLDSR 80
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
+G C GH+GY DL PVFH+G+FK +L CICK+C + LL
Sbjct: 81 LGAHRADAQCSSCGGTLKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSCGAFLLKG 140
Query: 3843 EQHRV-FSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF 3667
E+ R +R + ++ + +R K +V CKK TC C + G +++ + L
Sbjct: 141 EEKRQHLARLKQSYSIAHSYRLQFRK-LVERCKKVKTCPRCMSQQGQLRRTIRPTLDQFM 199
Query: 3666 ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGE 3487
++ GK + V D L P+FVQ L + D+ +L E
Sbjct: 200 KLTHTIKVDGK--------EYVED---------LTPIFVQTLLERVPYQDLDIL-----E 237
Query: 3486 EKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPS 3307
P +LL++R+PVPP CIRPSV ++G+ EDD+T+ L EI N+++K + G +
Sbjct: 238 TFKPGNLLISRLPVPPNCIRPSVTMG-ESGSNEDDLTVILSEITDLNNIIKSQMKSGFQT 296
Query: 3306 KTLFETWEHLQIQCALYINSEMSGLPPDMQPK---RAMRAFTQRLKGKQGRFRGNLCGKR 3136
L WE LQ+QC IN++ G+ + K +A R QRLKGK+GRFRGNL GKR
Sbjct: 297 FQLLGNWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKR 356
Query: 3135 VDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANY 2956
VDFSGRTVISPDPN+ +D+V VP+ +A LT+PE VNA NI+ +R+ V+NG D+ PGA Y
Sbjct: 357 VDFSGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGACY 416
Query: 2955 LVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKV 2776
V K G+K L+Y R +++ L +GD +ERH+ D+VLFNRQPSLH++SIMSH+ V
Sbjct: 417 -VYKSNGSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVV 475
Query: 2775 MPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVA 2596
MP RTFRFNECAC PYNADFDGDEMNLHLPQ A++E+ LM + NNL+TPR+GEPL+A
Sbjct: 476 MPWRTFRFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNGEPLIA 535
Query: 2595 AIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQ 2416
A QDF+ G Y+LT +D FL R + ++ + Q PVELWTGKQ
Sbjct: 536 ATQDFLLGMYVLTGRDIFLTRDQFSQYCCHFSNG----QIPMELPPPTILKPVELWTGKQ 591
Query: 2415 LIELIIRPDKGS----DVSLNLTAKNKSYTGNL-ELCSKDSYVIIRNSVLLAGCLDKSLL 2251
+ +I+RP+ DVS L ++ +L +LC + YV++R+S LLAG + K +L
Sbjct: 592 VFNMILRPNSNEKERIDVSFELKERDYDSKSDLKDLCPNEGYVVVRHSELLAGAIGKKVL 651
Query: 2250 GSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQ 2071
G SK +F+ ++ + + + M R++R +L+N+G +IGI DV P+ +LL K
Sbjct: 652 GGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYLANKGMTIGIDDVTPNAELLVAKKN 711
Query: 2070 LVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYN 1891
L+++GY + I E+GKL PG + E+TLE + + L IR+ AG+ +L N
Sbjct: 712 LLEDGYQRVQDEINSYEKGKLTPHPGLSLEDTLELKVKKILDDIRNEAGKASHISLPPSN 771
Query: 1890 APLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVA 1711
PL M + G+KG INI+QM+ACVGQQ ++G R +GF R+LPHF+ ++GFV
Sbjct: 772 KPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVG 831
Query: 1710 NSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVG 1531
NSF+SGL P EFFFHTM GREGLVDTAVKTAETGYMQRRLVK LEDLC YD TVR+S G
Sbjct: 832 NSFFSGLQPDEFFFHTMSGREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDG 891
Query: 1530 DVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEH 1432
+I+F++G+DGL+P +ME K +V+F + +H
Sbjct: 892 QIIQFIYGDDGLNPMLMEEK-LELVNFGKLFKH 923
Score = 291 bits (746), Expect = 7e-77
Identities = 177/393 (45%), Positives = 241/393 (61%), Gaps = 34/393 (8%)
Frame = -1
Query: 1149 LTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQ 970
+T QL FI+ + K +AITEPG AVGAIAA SIGEP TQMTLKTFHFAGVASMN+T
Sbjct: 1437 ITIRQLYEFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTL 1496
Query: 969 GVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDD 790
GVPRIKEIINA I TPII A L + D + A+ VK I KT L E+ IEE+Y P+
Sbjct: 1497 GVPRIKEIINAATKILTPIIEAKLENDSDFNYAQIVKGSIVKTLLNEVVSDIEELYSPNG 1556
Query: 789 YFLLVKLNSKRIRLLQLEVCMESISYAIAT----SKVCPQMRGCKIVAHGKTMMAI---- 634
F+ + LN + I+ L++ ++ +I + SK+ ++ +++ K + I
Sbjct: 1557 VFININLNEETIKGHYLDINAYTVRDSIVSHGPISKIKLKLEDIQVLDLWKLSILIGGGI 1616
Query: 633 -RPPSTSK--------------LSKTMTM----QILKYSLANVVVKGIPSVNRCVIHADE 511
+ S+S + TM + Q+LK L NVVV GIP + R VI D+
Sbjct: 1617 SQIGSSSNNINGTGNVNTLNTGIGNTMNVYFQTQLLKKGLQNVVVSGIPGIKRSVIRQDD 1676
Query: 510 K-------KGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINE 352
K K YSL VEG ++ G+ T N+ + V +VLGIEAAR II E
Sbjct: 1677 KEDPITGEKRKCYSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARKVIIQE 1736
Query: 351 IIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFE 172
+ MDA+ + +D RH+ LLAD+MT+RG+VLGI+R G+ KM+ S L+LASFE+T +HLFE
Sbjct: 1737 VQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEETNEHLFE 1796
Query: 171 AAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLM 73
AAF ++ D + GVSEC+IMG P+ +GTG+F ++
Sbjct: 1797 AAFQNRVDPVFGVSECVIMGKPIKIGTGSFDIL 1829
>gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida
albicans SC5314]
Length = 1728
Score = 732 bits (1890), Expect = 0.0
Identities = 504/1457 (34%), Positives = 760/1457 (51%), Gaps = 129/1457 (8%)
Frame = -1
Query: 4056 QPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCI 3877
+P G DP++G +C GHFG+ +L PVFHIGF + + +
Sbjct: 48 RPREGGLNDPRLGSIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESV 107
Query: 3876 CKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSH---------- 3727
C +C +LL + M + K + + CK C
Sbjct: 108 CMHCGKLLLDE------TNPAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNEDEMTDQ 161
Query: 3726 -----CGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLN 3562
CG T+++ D L + T + N+ D+ + + LL
Sbjct: 162 PSRGGCGHPQPTIRR----------------DGLKLWGT-WKQNKNYDDNDQPER-RLLT 203
Query: 3561 PLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVV-SEVKAGTTED 3385
P + +F +I D M + + P +L+T +PVPP +RPS+ +E G ED
Sbjct: 204 PSEILNVFKHISPEDC-YKMGFNEDYARPEWMLITVLPVPPPPVRPSIAFNETARG--ED 260
Query: 3384 DVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-R 3208
D+T KL +I+ N +++ + DG+P + E LQ A Y++++++G P +Q R
Sbjct: 261 DLTFKLADIIKANINVQRLETDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGR 320
Query: 3207 AMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIV 3028
+++ RLKGK+GR RGNL GKRVDFS RTVIS DPNL +DQVGVPI +A TLT+PEIV
Sbjct: 321 PIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIV 380
Query: 3027 NASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKR-DELAKNLRMGDTIERHLD 2851
NI K+ +LV NG + HPGA Y++ + TG++ L+Y KR ++A L+ G +ERHL
Sbjct: 381 TPYNIHKLTELVRNGPNEHPGAKYVI-RDTGDRIDLRYNKRAGDIA--LQYGWKVERHLM 437
Query: 2850 DNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEA 2671
D+D VLFNRQPSLHK+S+M+HR +VMP TFR N +PYNADFDGDEMNLH+PQ+ E
Sbjct: 438 DDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPET 497
Query: 2670 KAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAA------ 2509
++E S++ V +++P+S +P++ +QD + G +T +D F+ +V
Sbjct: 498 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWD 557
Query: 2508 ALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL 2329
+I A + K +LWTGKQL+ L I KG + + + G
Sbjct: 558 GVIPPPAVVKPK------------QLWTGKQLLSLAI--PKGIHL--------QRFDGGR 595
Query: 2328 ELCS-KDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAP 2152
+L S KD+ ++I + ++ G +DK +G++ + + +MR+ G + + ++
Sbjct: 596 DLLSPKDTGMLIVDGEIMFGVVDKKTVGATGG-GLIHTVMREKGPKVCAELFSSIQKVVN 654
Query: 2151 VFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETL 1972
+L + GFSIGIGD Q +R+ + + K + I + + KL+ +PG T E+
Sbjct: 655 YWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESF 714
Query: 1971 ESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHR 1792
E + R L+ RD AG+ +L N M GSKGSFINISQM ACVGQQ + G R
Sbjct: 715 EHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKR 774
Query: 1791 PPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAET 1612
P GF +RSLPHF + +PE+KGFV NS+ GLTP EFFFH M GREGL+DTAVKTAET
Sbjct: 775 IPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 834
Query: 1611 GYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKD-----GS----- 1462
GY+QRRLVK LED+ YDGT R+S+GD+I+F++GEDG+D +E + GS
Sbjct: 835 GYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFE 894
Query: 1461 ------VVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKG-KYVH-FADKLSE 1306
V+D +V+ + +++ KE V +L ++L E + K KY+ +
Sbjct: 895 RRYKIDVLDTENVISESL-LESGKEIRGDV-QLQKILDEEYNQLLKDRKYLREVCFPNGD 952
Query: 1305 YITQTEIKKSKKWQNGKA--HCGNHETADLKTKESC----KICKNL-----------EAY 1177
+ + + QN + H G + +DL+ +E ++C L EA
Sbjct: 953 FSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQ 1012
Query: 1176 KTSLLANSCLTKTQLCSFIELCYYKVARA----------------ITEPGTAVGAIAATS 1045
+ + L CL +++L + + +K+ RA I PG VG +AA S
Sbjct: 1013 ENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQS 1072
Query: 1044 IGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDP---YDESL 874
IGEP+TQMTL TFH+AGV+S N+T GVPR+KEI+N K I TP +T LDP D
Sbjct: 1073 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMT-VFLDPEVASDIEK 1131
Query: 873 ARRVKARIEKTTLGEICDYIEEVYLPDD--------------YFL--------------- 781
A+ V++ IE TTL + E Y PD YF
Sbjct: 1132 AKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPDQKVEESIDKQSP 1191
Query: 780 -LVKLNSKRIRLLQLEVCMESISYAIATS------KVCPQMRGCKIVAHGKTMMAIRPPS 622
L++L R ++L ++ M ++ I+ + + K++ + + P S
Sbjct: 1192 WLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR--DPKS 1249
Query: 621 TSKLSKTMTMQILK----YSLANVVVKGIPSVNRC------VIHADE----KKGDFYSLL 484
+ + QILK + L ++ ++GIP + R V H DE K+G + L
Sbjct: 1250 LDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSHPDETGEFKQGKEWVLE 1309
Query: 483 VEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRH 304
+G + V++ GVD +T N+ + V VLGIEA RS + EI+ + G ++ RH
Sbjct: 1310 TDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRH 1369
Query: 303 VMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSEC 124
+ LL DVMT RG ++ ITR+G+ + L+ SFE+T++ L +AA ++ D G+SE
Sbjct: 1370 MALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISEN 1429
Query: 123 IIMGTPMTVGTGTFKLM 73
+++G +GTG+F LM
Sbjct: 1430 VMLGQMAPLGTGSFDLM 1446
>gi|50557434|ref|XP_501909.1| hypothetical protein [Yarrowia
lipolytica]
gi|49647776|emb|CAG82229.1| unnamed protein product [Yarrowia
lipolytica CLIB99]
Length = 1721
Score = 732 bits (1889), Expect = 0.0
Identities = 497/1462 (33%), Positives = 762/1462 (51%), Gaps = 121/1462 (8%)
Frame = -1
Query: 4068 EGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQL 3889
E + +P G DP++G +C GHFG+ +L PVFHIGF ++
Sbjct: 16 ETRQRPRVGGLNDPRLGTIDRNFKCQTCGEGMAECPGHFGHIELAKPVFHIGFIAKIKKI 75
Query: 3888 LQCICKNCSSILLTPEQHRVFSR--QVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLK 3715
+ +C +C +LL E ++ F++ ++ +P K + + CK C
Sbjct: 76 CESVCFHCGKVLLD-ENNKQFAQAIRIRDP-------KRRFNAVWSLCKTKMVCETDVPT 127
Query: 3714 ----NGTVKKAVGAVLKIAFASPVSVDELGKFATMF--SSNQEVGDHVRKMKFTLLNPLF 3553
+G VK + G I V D L + T + ++GD K LL P
Sbjct: 128 EDDGSGVVKHSHGGCGNIQ--PTVRRDGLKLWGTWKRGKNGDDMGDSPEKR---LLTPAE 182
Query: 3552 VQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSV-VSEVKAGTTEDDVT 3376
+ +F +I D L + + P L++T +PVPP +RPS+ +++ G EDD+T
Sbjct: 183 ILNVFKHISSEDCQRLGLNE-DYARPEWLIITTLPVPPPPVRPSIAINDTARG--EDDLT 239
Query: 3375 MKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMR 3199
KL +I+ N +++ +++GAP+ + E LQ A Y++++++G P +Q R ++
Sbjct: 240 YKLADILKANANVQRCEQEGAPAHVVNEFESLLQYHVATYMDNDIAGQPQALQKSGRPVK 299
Query: 3198 AFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNAS 3019
+ RLKGK+GR RGNL GKRVDFS RTVI+ DPNL +DQVGVP +A TLT+PEIV
Sbjct: 300 SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLTYPEIVTPF 359
Query: 3018 NIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKR-DELAKNLRMGDTIERHLDDND 2842
NI K+ + V NG + HPGA Y++ + TG + L+Y KR ++A L+ G +ERHL DND
Sbjct: 360 NIHKLTEYVRNGPNEHPGAKYVI-RDTGERIDLRYHKRAGDIA--LQYGWKVERHLMDND 416
Query: 2841 VVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAE 2662
VLFNRQPSLHK+S+M+HR +VMP TFR N +PYNADFDGDEMNLH+PQ+ E +AE
Sbjct: 417 PVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE 476
Query: 2661 ASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKK 2482
S+L V +++P+S +P++ +QD + G +T +D+F+ V + +
Sbjct: 477 LSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFWIPNWDGVV 536
Query: 2481 QTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYV 2302
T LWTGKQ++ + I KG + + N C KD+ +
Sbjct: 537 PTPAILKPK------PLWTGKQMVSMCI--PKGIHLQ-------RFDDQNPITCPKDNGM 581
Query: 2301 IIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSI 2122
I + ++ G +DK +G++ + + +MR+ G + + ++ +L + GFSI
Sbjct: 582 YIIDGQIMWGVVDKKTIGATGG-GLVHTIMREKGSAVCCNFFGTIQKVVNFWLLHYGFSI 640
Query: 2121 GIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELST 1942
GIGD +R+ + ++ K + I E L A+ G T E+ E + R L+
Sbjct: 641 GIGDTIADSATMRDVTETIEEAKKKVKEIILEAHANTLTAEAGMTMRESFEHNVSRVLNQ 700
Query: 1941 IRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSL 1762
RD AG+ +L N M V GSKGSFINISQM ACVGQQ + G R P GF +R+L
Sbjct: 701 ARDTAGRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQQMVEGKRVPFGFADRTL 760
Query: 1761 PHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKC 1582
PHF + +PE+KGF+ NS+ GLTP EFFFH M GREGL+DTAVKTAETGY+QRRLVK
Sbjct: 761 PHFCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 820
Query: 1581 LEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVV---DFTHVLEHAKNIQTT 1411
LED+ YDGTVR+S+GDVI+FV+GEDGLD A +E + + D + + ++
Sbjct: 821 LEDVMVQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQTVDTIPGSDESFERRYKIDLMNP 880
Query: 1410 KEQPIPVDKLDEVL-KAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGK------- 1255
K +P+ ++ ++++ E+Q+ +Y ++ +T + + + + NG
Sbjct: 881 KTKPLNIESGNDIVGDVEVQRVLDEEY-------NQLLTDRRLLREEVFTNGDHNWPLPV 933
Query: 1254 ------------AHCGNHETADLKTKESCK----ICKNL-----------EAYKTSLLAN 1156
+ + +DL E + +CK L EA + + +
Sbjct: 934 NIRRVVQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEAQENATMLF 993
Query: 1155 SCLTKTQLCSFIELCYYKV----------------ARAITEPGTAVGAIAATSIGEPSTQ 1024
CL +++ + + Y++ A+++ PG VG IAA SIGEP+TQ
Sbjct: 994 QCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQSIGEPATQ 1053
Query: 1023 MTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDP---YDESLARRVKAR 853
MTL TFH+AGV+S N+T GVPR+KEI+N K I TP +T L+P D A+ V++
Sbjct: 1054 MTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALT-VYLEPSVAADIEKAKVVQSA 1112
Query: 852 IEKTTLGEICDYIEEVYLPDD--------------YF----------------LLVKLNS 763
IE T+L + E Y PD YF L++L
Sbjct: 1113 IEHTSLKNVTAATEIYYDPDPRTTVIEEDIDTVDAYFSIPDETVEATLDNQSPWLLRLEL 1172
Query: 762 KRIRLLQLEVCMESISYAIATS------------KVCPQMRGCKIVAHGKTMMAIRPPST 619
R ++L ++ M ++ I++S + C++V KT+
Sbjct: 1173 DRAKMLDKQLTMSQVAQKISSSYGEDLFVMWSEDNADKLIIRCRVVRDPKTL----EEDV 1228
Query: 618 SKLSKTMTMQILKYSLANVVVKGIPSVNRCVIH------ADEKKGDF-----YSLLVEGT 472
M +I + L ++ ++GI ++R + DE GD+ + L +G
Sbjct: 1229 DAEEDQMLKRIEGHMLDSISLRGIEGIDRVFMMEHKMSVPDEVTGDYKTKMEWVLETDGI 1288
Query: 471 DFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLL 292
+ V++ GVDP +T N+ + V VLGIEA RS + EI+ + G ++ RH+ LL
Sbjct: 1289 NLAEVMAVDGVDPYRTYSNSFVEVLSVLGIEATRSALYREILNVIAFDGSYVNYRHMALL 1348
Query: 291 ADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMG 112
DVMT RG ++ ITR+G+ + L+ SFE+T++ L EAA ++ D GVSE I++G
Sbjct: 1349 VDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILLEAAAVAELDDCRGVSENIMLG 1408
Query: 111 TPMTVGTGTFKLMQKYDKKAVL 46
+GTG F +M D+ + L
Sbjct: 1409 QLAPLGTGNFGVMLDEDQLSTL 1430
>gi|50409953|ref|XP_456921.1| unnamed protein product [Debaryomyces
hansenii]
gi|49652585|emb|CAG84899.1| unnamed protein product [Debaryomyces
hansenii CBS767]
Length = 1749
Score = 725 bits (1872), Expect = 0.0
Identities = 494/1459 (33%), Positives = 748/1459 (50%), Gaps = 131/1459 (8%)
Frame = -1
Query: 4056 QPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCI 3877
+P G DP++G +C GHFG+ +L PVFHIGF ++ +C+
Sbjct: 48 KPREAGLNDPRLGSIDRNLKCQTCGEDMAECPGHFGHIELTKPVFHIGFIAKIKKVCECV 107
Query: 3876 CKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSH---------- 3727
C +C +LL + M+ + K + CK C
Sbjct: 108 CMHCGKLLLDE------TNLAMSQAIKIRDPKKRFNAVWNLCKAKMICEADNVTSENDPN 161
Query: 3726 ----------CGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMK 3577
CG TV++ D L + T + N+ ++ + +
Sbjct: 162 WKPDQPNKGGCGHTQPTVRR----------------DGLKLWGT-WKQNKNFDENEQPER 204
Query: 3576 FTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAG 3397
LL P + +F +I D L + P +L+T +PVPP +RPS+ A
Sbjct: 205 -RLLTPSEILSVFKHINSQDCYRLGFNE-DYARPEWMLITVLPVPPPPVRPSIAFNDTA- 261
Query: 3396 TTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQ 3217
EDD+T KL +++ N +++ + DG+P + E LQ A Y++++++G P +Q
Sbjct: 262 RGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQ 321
Query: 3216 PK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTF 3040
R +++ RLKGK+GR RGNL GKRVDFS RTVIS DPNL +DQVGVPI +A TL++
Sbjct: 322 KTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSY 381
Query: 3039 PEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKR-DELAKNLRMGDTIE 2863
PEIV NI ++ + V NG + HPGA Y++ + TG++ L+Y KR ++A L+ G +E
Sbjct: 382 PEIVTPYNIHRLTEYVRNGPNEHPGAKYVI-RDTGDRIDLRYNKRAGDIA--LQYGWKVE 438
Query: 2862 RHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQ 2683
RHL D+D VLFNRQPSLHK+S+M+HR KVMP TFR N +PYNADFDGDEMNLH+PQ
Sbjct: 439 RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 498
Query: 2682 TYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAA-- 2509
+ E +AE S++ V +++P+S +P++ +QD + G +T +D F+ +V
Sbjct: 499 SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLYWI 558
Query: 2508 ----ALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSY 2341
+I A K LWTGKQL+ + I KG + KN
Sbjct: 559 PNWDGVIPPPAIVSPK------------PLWTGKQLLSMAI--PKGIHLQRFDDGKNL-- 602
Query: 2340 TGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLAR 2161
L KD+ +++ + ++ G +DK +G++ + + +MR+ G + +
Sbjct: 603 -----LSPKDNGMLVVDGEIMFGVVDKKTVGATGG-GLIHTVMREKGSQVCAQLFSSIQK 656
Query: 2160 MAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEE 1981
+ +L + GFSIGIGD +R+ + + K + I + + KL+ +PG T
Sbjct: 657 VVNFWLLHNGFSIGIGDTIADSSTMRDVTTTIQDAKDKVQEIILDAQLNKLEPEPGMTLR 716
Query: 1980 ETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAIS 1801
E+ E + R L+ RD AG+ NL N M V GSKGSFINISQM ACVGQQ +
Sbjct: 717 ESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVE 776
Query: 1800 GHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKT 1621
G R P GF +RSLPHF + +PE+KGFV NS+ GLTP EFFFH M GREGL+DTAVKT
Sbjct: 777 GKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 836
Query: 1620 AETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKD-----GSVV 1456
AETGY+QRRLVK LED+ YDG+ R+S+GD+I+FV+GEDG+D +E + GS
Sbjct: 837 AETGYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDE 896
Query: 1455 DFTH-----VLEHAKNIQTT---KEQPIPVD-KLDEVLKAEI-QKKFKGKYVH---FADK 1315
F VL+ +K+I+ + + I D KL +VL E Q + +Y+ F +
Sbjct: 897 SFEKRYRIDVLDPSKSIRESLLESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNG 956
Query: 1314 LSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCK----ICKNL-----------EA 1180
+ +++ + H G H+ +DL+ E + +C L EA
Sbjct: 957 DFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLVIRGKTALTKEA 1016
Query: 1179 YKTSLLANSCLTKTQLCSFIELCYYKVAR----------------AITEPGTAVGAIAAT 1048
+ + L CL +++L + + +K++R +I PG VG IAA
Sbjct: 1017 QENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQ 1076
Query: 1047 SIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALL--DPYDESL 874
SIGEP+TQMTL TFH+AGV+S N+T GVPR+KEI+N K I TP +T L D
Sbjct: 1077 SIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESAADIEK 1136
Query: 873 ARRVKARIEKTTLGEICDYIEEVYLPDD--------------YFL--------------- 781
A+ V++ IE TTL + E Y PD YF
Sbjct: 1137 AKIVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDEKVEESIEKQSP 1196
Query: 780 -LVKLNSKRIRLLQLEVCMESISYAIATS------------KVCPQMRGCKIVAHGKTMM 640
L++L R ++L ++ M ++ I+ + + C++V K++
Sbjct: 1197 WLLRLELDRAKMLDKQLTMSQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKSLD 1256
Query: 639 AIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCV-----IHADEKKGDF-----YS 490
++ K +I + L ++ ++GIP + R +++ + G+F +
Sbjct: 1257 EDADAEEDQILK----RIESHMLESISLRGIPGITRVFMMQHKVNSPDITGEFKQSQEWV 1312
Query: 489 LLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDR 310
L +G + V++ GVD +T NN + V VLGIEA R+ + EI+ + G ++
Sbjct: 1313 LETDGVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIAFDGSYVNY 1372
Query: 309 RHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVS 130
RH+ LL DVMT RG ++ ITR+G+ + L+ SFE+T++ L EA ++ D G+S
Sbjct: 1373 RHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAGSAAELDDCRGIS 1432
Query: 129 ECIIMGTPMTVGTGTFKLM 73
E +++G +GTG F +M
Sbjct: 1433 ENVMLGQMAPLGTGAFDVM 1451
>gi|17530899|ref|NP_511124.1| CG1554-PA [Drosophila melanogaster]
gi|14286163|sp|P04052|RPB1_DROME DNA-directed RNA polymerase II
largest subunit
gi|7292659|gb|AAF48057.1| CG1554-PA [Drosophila melanogaster]
Length = 1887
Score = 716 bits (1848), Expect = 0.0
Identities = 491/1451 (33%), Positives = 747/1451 (50%), Gaps = 111/1451 (7%)
Frame = -1
Query: 4077 EDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLT 3898
E +EG +P G +DP+ GV T+C GHFG+ DL PVFHIGF T
Sbjct: 41 ETMEGG-RPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKT 99
Query: 3897 IQLLQCICKNCSSILLTPEQHRVF-----SRQVMNPNLDYLHRKALHKRIVAACKKGSTC 3733
I++L+C+C CS +L++P ++ SR L Y++ K I +
Sbjct: 100 IKILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLT 159
Query: 3732 SHCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLF 3553
+ K G P S+ G T +Q +K+ +++
Sbjct: 160 KENQQPDPNKKPGHGGC---GHYQP-SIRRTGLDLTAEWKHQNEDSQEKKI---VVSAER 212
Query: 3552 VQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTM 3373
V ++ +I + + +L + + P+ +++T +PVPP+ +RP+VV A +DD+T
Sbjct: 213 VWEILKHITDEECFILGM-DPKYARPDWMIVTVLPVPPLAVRPAVVM-FGAAKNQDDLTH 270
Query: 3372 KLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRA 3196
KL +I+ N+ L+K++ GA + + E + LQ A ++++M G+P MQ + ++A
Sbjct: 271 KLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKA 330
Query: 3195 FTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASN 3016
RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRIDQVGVP +A LTFPE+V N
Sbjct: 331 IKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFN 390
Query: 3015 IEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVV 2836
I++M++LV G+ +PGA Y+V L + K +L +L+ G +ERHL D+D+V
Sbjct: 391 IDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDL--HLQCGYKVERHLRDDDLV 448
Query: 2835 LFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEAS 2656
+FNRQP+LHK+S+M HR KV+P TFR N +PYNADFDGDEMNLH+PQ+ E +AE
Sbjct: 449 IFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVE 508
Query: 2655 ELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQT 2476
+ +ITP++ +P++ +QD +T +T +D F+ R +V L AK
Sbjct: 509 NIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQ 568
Query: 2475 KXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSK-DSYVI 2299
LWTGKQ+ LII P + + + T ++ G + S D+ V+
Sbjct: 569 PCILKPR------PLWTGKQIFSLII-PGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVM 621
Query: 2298 IRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIG 2119
+ + L+ G L K LG+S+ ++ ++ + G D A + + +L G SIG
Sbjct: 622 VEHGELIMGILCKKSLGTSAG-SLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIG 680
Query: 2118 IGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTI 1939
IGD Q E Q + I++ +L+ PG T +T E+ + R L+
Sbjct: 681 IGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDA 740
Query: 1938 RDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLP 1759
RD G ++L++YN M V GSKGS INISQ+IACVGQQ + G R P GF +R+LP
Sbjct: 741 RDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLP 800
Query: 1758 HFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCL 1579
HF + PE++GFV NS+ +GLTP+EF+FH MGGREGL+DTAVKTAETGY+QRRL+K +
Sbjct: 801 HFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 860
Query: 1578 EDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTH-VLEHAKNIQTTKEQ 1402
E + +YDGTVR+SVG +I+ +GEDGL ++E ++ V ++ E + E+
Sbjct: 861 ESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 920
Query: 1401 PIPVDKLDEVLK-----AEIQKKFKGKY---VHFADKLSEYITQTEIK-------KSKKW 1267
+ D+V+K +E ++ + ++ V D L + E K + W
Sbjct: 921 LMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIW 980
Query: 1266 QNGKA-HCGNHETADLKTKESCKICKNL---------------EAYKTSLLANSCLTKTQ 1135
K H DL K K L +A + + L CL ++
Sbjct: 981 NVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRST 1040
Query: 1134 LCS----------------FIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFH 1003
LC+ + + +A PG VGA+AA S+GEP+TQMTL TFH
Sbjct: 1041 LCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFH 1100
Query: 1002 FAGVASMNITQGVPRIKEIINAVKTISTPIITAALLD--PYDESLARRVKARIEKTTLGE 829
FAGV+S N+T GVPR+KEIIN K P +T L D A+ V R+E TTL +
Sbjct: 1101 FAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRK 1160
Query: 828 ICDYIEEVYLPD----------------------------DYFLLVKLNSKRI--RLLQL 739
+ Y PD + L ++L+ KR+ + L +
Sbjct: 1161 VTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTM 1220
Query: 738 EVCMESISYAIATSKVC--------PQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQIL 583
E E I+ C + +I+ + + + K+ M ++ +
Sbjct: 1221 EQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCI 1280
Query: 582 KYS-LANVVVKGIPSVNRCVIH---ADEKK-------GDF-----YSLLVEGTDFRSVLS 451
+ + L+++ ++GI ++ + +H D KK G+F + L +GT VLS
Sbjct: 1281 EANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLS 1340
Query: 450 SVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYR 271
VDP +T+ N+ + VLGIEA R + E+ A + +G+ ++ RH+ LL DVMT +
Sbjct: 1341 ERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAK 1400
Query: 270 GEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGT 91
G ++ ITR+G+ + L+ SFE+T+D L +AA ++ D + GVSE IIMG +GT
Sbjct: 1401 GHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGT 1460
Query: 90 GTFKLMQKYDK 58
G F L+ +K
Sbjct: 1461 GCFDLLLDAEK 1471
>gi|279533|pir||RNFF2L DNA-directed RNA polymerase (EC 2.7.7.6) II
215K chain [validated] - fruit fly (Drosophila
melanogaster)
gi|158332|gb|AAA28868.1| RNA polymerase II
Length = 1896
Score = 714 bits (1843), Expect = 0.0
Identities = 490/1451 (33%), Positives = 746/1451 (50%), Gaps = 111/1451 (7%)
Frame = -1
Query: 4077 EDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLT 3898
E +EG +P G +DP+ GV T+C GHFG+ DL PVFHIGF T
Sbjct: 41 ETMEGG-RPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKT 99
Query: 3897 IQLLQCICKNCSSILLTPEQHRVF-----SRQVMNPNLDYLHRKALHKRIVAACKKGSTC 3733
I++L+C+C CS +L++P ++ SR L Y++ K I +
Sbjct: 100 IKILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLT 159
Query: 3732 SHCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLF 3553
+ K G P S+ G T +Q +K+ +++
Sbjct: 160 KENQQPDPNKKPGHGGC---GHYQP-SIRRTGLDLTAEWKHQNEDSQEKKI---VVSAER 212
Query: 3552 VQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTM 3373
V ++ +I + + +L + + P+ +++T +PVPP+ +RP+VV A +DD+T
Sbjct: 213 VWEILKHITDEECFILGM-DPKYARPDWMIVTVLPVPPLAVRPAVVM-FGAAKNQDDLTH 270
Query: 3372 KLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRA 3196
KL +I+ N+ L+K++ GA + + E + LQ A ++++M G+P MQ + ++A
Sbjct: 271 KLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKA 330
Query: 3195 FTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASN 3016
RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRIDQVGVP +A LTFPE+V N
Sbjct: 331 IKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFN 390
Query: 3015 IEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVV 2836
I++M++LV G+ +PGA Y+V L + K +L +L+ G +ERHL D+D+V
Sbjct: 391 IDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDL--HLQCGYKVERHLRDDDLV 448
Query: 2835 LFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEAS 2656
+FNRQP+LHK+S+M HR KV+P TFR N +PYNADFDGDEMNLH+PQ+ E +AE
Sbjct: 449 IFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVE 508
Query: 2655 ELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQT 2476
+ +ITP++ +P++ +QD +T +T +D F+ R +V L AK
Sbjct: 509 NIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQ 568
Query: 2475 KXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSK-DSYVI 2299
LWTGKQ+ LII P + + + T ++ G + S D+ V+
Sbjct: 569 PCILKPR------PLWTGKQIFSLII-PGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVM 621
Query: 2298 IRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIG 2119
+ + L+ G L K LG+S+ ++ ++ + G D A + + +L G SIG
Sbjct: 622 VEHGELIMGILCKKSLGTSAG-SLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIG 680
Query: 2118 IGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTI 1939
IGD Q E Q + I++ +L+ PG T +T E+ + R L+
Sbjct: 681 IGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDA 740
Query: 1938 RDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLP 1759
D G ++L++YN M V GSKGS INISQ+IACVGQQ + G R P GF +R+LP
Sbjct: 741 HDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLP 800
Query: 1758 HFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCL 1579
HF + PE++GFV NS+ +GLTP+EF+FH MGGREGL+DTAVKTAETGY+QRRL+K +
Sbjct: 801 HFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 860
Query: 1578 EDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTH-VLEHAKNIQTTKEQ 1402
E + +YDGTVR+SVG +I+ +GEDGL ++E ++ V ++ E + E+
Sbjct: 861 ESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER 920
Query: 1401 PIPVDKLDEVLK-----AEIQKKFKGKY---VHFADKLSEYITQTEIK-------KSKKW 1267
+ D+V+K +E ++ + ++ V D L + E K + W
Sbjct: 921 LMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIW 980
Query: 1266 QNGKA-HCGNHETADLKTKESCKICKNL---------------EAYKTSLLANSCLTKTQ 1135
K H DL K K L +A + + L CL ++
Sbjct: 981 NVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRST 1040
Query: 1134 LCS----------------FIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFH 1003
LC+ + + +A PG VGA+AA S+GEP+TQMTL TFH
Sbjct: 1041 LCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFH 1100
Query: 1002 FAGVASMNITQGVPRIKEIINAVKTISTPIITAALLD--PYDESLARRVKARIEKTTLGE 829
FAGV+S N+T GVPR+KEIIN K P +T L D A+ V R+E TTL +
Sbjct: 1101 FAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRK 1160
Query: 828 ICDYIEEVYLPD----------------------------DYFLLVKLNSKRI--RLLQL 739
+ Y PD + L ++L+ KR+ + L +
Sbjct: 1161 VTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTM 1220
Query: 738 EVCMESISYAIATSKVC--------PQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQIL 583
E E I+ C + +I+ + + + K+ M ++ +
Sbjct: 1221 EQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCI 1280
Query: 582 KYS-LANVVVKGIPSVNRCVIH---ADEKK-------GDF-----YSLLVEGTDFRSVLS 451
+ + L+++ ++GI ++ + +H D KK G+F + L +GT VLS
Sbjct: 1281 EANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLS 1340
Query: 450 SVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYR 271
VDP +T+ N+ + VLGIEA R + E+ A + +G+ ++ RH+ LL DVMT +
Sbjct: 1341 ERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAK 1400
Query: 270 GEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGT 91
G ++ ITR+G+ + L+ SFE+T+D L +AA ++ D + GVSE IIMG +GT
Sbjct: 1401 GHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGT 1460
Query: 90 GTFKLMQKYDK 58
G F L+ +K
Sbjct: 1461 GCFDLLLDAEK 1471
>gi|45187959|ref|NP_984182.1| ADR086Cp [Eremothecium gossypii]
gi|44982743|gb|AAS52006.1| ADR086Cp [Eremothecium gossypii]
Length = 1745
Score = 714 bits (1842), Expect = 0.0
Identities = 486/1439 (33%), Positives = 750/1439 (51%), Gaps = 109/1439 (7%)
Frame = -1
Query: 4032 DPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSIL 3853
DP++G DC GHFG+ +L PVFHIGF ++ +C+C +C +L
Sbjct: 55 DPRLGSIDRNFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLL 114
Query: 3852 LTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKI 3673
L +++ RQ + K + + CK C K +
Sbjct: 115 L--DEYNELMRQAIKIK----DPKRRFNAVWSLCKAKMVCDTEVPSEDDPSKYISRGGCG 168
Query: 3672 AFASPVSVDELGKFATMFSS-NQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVR 3496
+ D L T N E D K +++ + +F +I D L
Sbjct: 169 NAQPSIRKDGLSLVGTWKKDKNAEDADQPEKR---IISAEEILNVFKHISPEDSWRLGFN 225
Query: 3495 SGEEKHPNDLLLTRMPVPPVCIRPSV-VSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRD 3319
+ P +LLT +PVPP +RPS+ +E + G EDD+T KL +I+ N +++ + +
Sbjct: 226 E-DFSRPEWMLLTVLPVPPPPVRPSISFNESQRG--EDDLTYKLGDILKANINVQRLEIN 282
Query: 3318 GAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCG 3142
G+P + E+ LQ A Y++++++G P +Q R +++ RLKGK+GR RGNL G
Sbjct: 283 GSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMG 342
Query: 3141 KRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGA 2962
KRVDFS RTVIS DPNL +DQVGVP +A TLT+PE+V NI+++ QLV NG + HPGA
Sbjct: 343 KRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGA 402
Query: 2961 NYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRA 2782
Y++ + G++ L+Y KR + L+ G +ERH+ D+D VLFNRQPSLHK+S+M+HR
Sbjct: 403 KYVI-RDNGDRIDLRYSKRAGDIQ-LQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRV 460
Query: 2781 KVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPL 2602
KVMP TFR N +PYNADFDGDEMNLH+PQ+ E +AE S+L V +++P+S +P
Sbjct: 461 KVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPC 520
Query: 2601 VAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTG 2422
+ +QD + G +T +DTF+ +V + D T LW+G
Sbjct: 521 MGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILKPK------PLWSG 574
Query: 2421 KQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSS 2242
KQL+ + I S + L + +Y L KD+ ++I + ++ G +DK +GSS
Sbjct: 575 KQLLSMAIP----SGIHLQRFDEGTTY-----LSPKDNGMLIIDGQIIFGVVDKKTVGSS 625
Query: 2241 SKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVD 2062
S + +++ R+ G + + ++ +L + GFSIGIGD E+ +RE +
Sbjct: 626 SG-GLIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITDAIA 684
Query: 2061 NGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPL 1882
K + KE + L A+ G T E+ E ++R L+ RD AG+ NL N
Sbjct: 685 LAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVK 744
Query: 1881 TMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSF 1702
M GSKGSFINI+QM ACVGQQ++ G R GF +R+LPHF + +PE+KGFV NS+
Sbjct: 745 QMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSY 804
Query: 1701 YSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVI 1522
GLTP EFFFH MGGREGL+DTAVKTAETGY+QRRLVK LED+ YDGT R+S+G++I
Sbjct: 805 LRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNII 864
Query: 1521 EFVFGEDGLDPAMMEAKD-----GSVVDF-----------THVLEHAKNIQTTKEQPIPV 1390
+FV+GEDG+D A +E + GS + F + L+ N+ + + +
Sbjct: 865 QFVYGEDGMDAAHIEKQSIDTIPGSDLAFEKRYRIDLLNPNYALD--PNLLESGTEIVGD 922
Query: 1389 DKLDEVLKAEIQKKFKGKYVHFADKL---SEYITQTEIKKSKKWQNGKA--HCGNHETAD 1225
KL +L E ++ + + HF K+ E+ + + QN + + + D
Sbjct: 923 LKLQNLLDEEYKQLVQDR--HFLRKIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTD 980
Query: 1224 LKTKESCKICKNL---------------EAYKTSLLANSCLTKTQLCSFIELCYYKVA-- 1096
L ++ + + L EA + ++ CL +++L + + Y++
Sbjct: 981 LSIQDVVQGVRGLQERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQ 1040
Query: 1095 --------------RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPR 958
R+I PG VG +AA SIGEP+TQMTL TFHFAGVAS +T GVPR
Sbjct: 1041 TFEWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPR 1100
Query: 957 IKEIINAVKTISTPIITAALLDPY--DESLARRVKARIEKTTLGEICDYIEEVYLPDDYF 784
+KEI+N K + TP +T L + Y D+ A+ +++ IE TTL + E Y PD
Sbjct: 1101 LKEILNVAKNMKTPSLTVYLEESYATDQEKAKLIRSAIEHTTLKSVPVASEIYYDPDPSS 1160
Query: 783 LLVKLNSKRIR--------------------LLQLE---VCM--ESISYAIATSKVCPQM 679
+++ + + I+ LL+LE V M + ++ K+
Sbjct: 1161 TVIEEDEEIIQLHFSLMDEETEASLKHQSPWLLRLELDRVAMTDKDLTMGQVGEKIKETF 1220
Query: 678 RG-----------------CKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKG 550
+ C++V KT+ A + K +I L ++ ++G
Sbjct: 1221 KNDLFVIWSEDNAEKLIIRCRVVRDPKTLDAEAEAEEDHMLK----KIENTMLESITLRG 1276
Query: 549 IPSVNRCVIHADEKK-----GDFYS-----LLVEGTDFRSVLSSVGVDPRKTNFNNALVV 400
+ + R V+ ++K G+++ L +G + V+S GVDP + N+ + +
Sbjct: 1277 VQDITRVVMMKYDRKVPSETGEYHKIPEWVLETDGVNLSEVMSVPGVDPTRIYTNSFIDI 1336
Query: 399 ADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDS 220
+VLGIEA R+ + E+ + + G ++ RH+ LL DVMT +G ++ +TR+G +
Sbjct: 1337 MNVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTG 1396
Query: 219 VLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKYDKKAVLK 43
L+ SFE+T++ LFEA ++ D GVSE +I+G +GTG+F +M D ++++K
Sbjct: 1397 ALMRCSFEETVEILFEAGAAAELDDCSGVSENVILGQMAPIGTGSFDVM--IDDESLIK 1453
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II
complex [Drosophila guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit
[Drosophila guanche]
Length = 1889
Score = 709 bits (1831), Expect = 0.0
Identities = 489/1468 (33%), Positives = 739/1468 (50%), Gaps = 128/1468 (8%)
Frame = -1
Query: 4077 EDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLT 3898
E +EG +P G +DP+ GV T+C GHFG+ DL PVFHIGF T
Sbjct: 41 ETMEGG-RPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKT 99
Query: 3897 IQLLQCICKNCSSILLTPEQHR-----VFSRQVMNPNLDYLHRKALHKRIVAACKKGSTC 3733
I++L+C+C CS +L++P + V S+ L Y++ K I C+ G
Sbjct: 100 IKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLAYVYDLCKGKTI---CEGGEDM 156
Query: 3732 S-----------------HCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQE 3604
CG ++++ G L + P + K E
Sbjct: 157 DLTKDNQQPDPNKKPGHGGCGHYQPSIRRT-GLDLSAEWKHPNEDSQEKKIVVSAERVWE 215
Query: 3603 VGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRP 3424
+ H+ + +L + P+ +++T +PVPP+ +RP
Sbjct: 216 ILKHITDEECFILG---------------------MDPKYARPDWMIVTVLPVPPLAVRP 254
Query: 3423 SVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSE 3244
+VV A +DD+T KL +I+ N+ L+K++ GA + + E + LQ A ++++
Sbjct: 255 AVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDND 313
Query: 3243 MSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVP 3067
M G+P MQ + ++A RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRIDQVGVP
Sbjct: 314 MPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
Query: 3066 IHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKN 2887
+A LTFPE+V NI++M++LV G+ +PGA Y+V L + K +L +
Sbjct: 374 RSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDL--H 431
Query: 2886 LRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGD 2707
L+ G +ERHL D+D+V+FNRQP+LHK+S+M HR KV+P TFR N +PYNADFDGD
Sbjct: 432 LQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGD 491
Query: 2706 EMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAE 2527
EMNLH+PQ+ E +AE + +ITP++ +P++ +QD +T +T +D F+ R +
Sbjct: 492 EMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQ 551
Query: 2526 VYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNK 2347
V L K LWTGKQ+ LII P + + + T ++
Sbjct: 552 VMNLLMFLPTWDGKMPQPCILKPR------PLWTGKQIFSLII-PGNVNMIRTHSTHPDE 604
Query: 2346 SYTGNLELCSK-DSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWR 2170
G + S D+ V++ + L+ G L K LG+S+ ++ ++ + G + A
Sbjct: 605 EDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAG-SLLHICFLELGHEIAGRFYGN 663
Query: 2169 LARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGC 1990
+ + +L G SIGIGD Q E + I++ +L+ PG
Sbjct: 664 IQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGN 723
Query: 1989 TEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQ 1810
T +T E+ + R L+ RD G ++L++YN M V GSKGS INISQ+IACVGQQ
Sbjct: 724 TLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 783
Query: 1809 AISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTA 1630
+ G R P GF +R+LPHF + PE++GFV NS+ +GLTP+EF+FH MGGREGL+DTA
Sbjct: 784 NVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 843
Query: 1629 VKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDF 1450
VKTAETGY+QRRL+K +E + +YDGTVR+SVG +I+ +GEDGL ++E ++ V
Sbjct: 844 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKL 903
Query: 1449 TH-VLEHAKNIQTTKEQPIPVDKLDEVLK-----AEIQKKFKGKY---VHFADKLSEYIT 1297
++ E + E+ + DEV+K +E + + ++ +H D L
Sbjct: 904 SNKAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLRVIFP 963
Query: 1296 QTEIK-------KSKKWQNGKA-HCGNHETADLKTKESCKICKNL--------------- 1186
+ K + W K H DL K K L
Sbjct: 964 NGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADRISK 1023
Query: 1185 EAYKTSLLANSCLTKTQLCS----------------FIELCYYKVARAITEPGTAVGAIA 1054
+A + + L CL ++ LC+ I + +A PG VGA+A
Sbjct: 1024 QANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALA 1083
Query: 1053 ATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLD--PYDE 880
A S+GEP+TQMTL TFHFAGV+S N+T GVPR+KEIIN K P +T L D
Sbjct: 1084 AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDA 1143
Query: 879 SLARRVKARIEKTTLGEICDYIEEVYLPD----------------------------DYF 784
A+ V R+E TTL ++ Y PD +
Sbjct: 1144 EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWL 1203
Query: 783 LLVKLNSKRI--RLLQLEVCMESISYAIATSKVC--------PQMRGCKIVAHGKTMMAI 634
L ++L+ KR+ + L +E E I+ C + +I+ + +
Sbjct: 1204 LRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQD 1263
Query: 633 RPPSTSKLSKTMTMQILKYS-LANVVVKGIPSVNRCVIH---ADEKK-------GDF--- 496
+ K+ M ++ ++ + L+++ ++GI ++ + +H D KK G+F
Sbjct: 1264 EDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAI 1323
Query: 495 --YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGI 322
+ L +GT VLS VDP +T+ N+ + VLGIEA R + E+ A + +G+
Sbjct: 1324 GEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGL 1383
Query: 321 GLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVI 142
++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D L +AA ++ D +
Sbjct: 1384 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPM 1443
Query: 141 HGVSECIIMGTPMTVGTGTFKLMQKYDK 58
GVSE IIMG +GTG F L+ +K
Sbjct: 1444 RGVSENIIMGQLPKMGTGCFDLLLDAEK 1471
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II
complex [Drosophila madeirensis]
Length = 1889
Score = 709 bits (1831), Expect = 0.0
Identities = 489/1468 (33%), Positives = 739/1468 (50%), Gaps = 128/1468 (8%)
Frame = -1
Query: 4077 EDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLT 3898
E +EG +P G +DP+ GV T+C GHFG+ DL PVFHIGF T
Sbjct: 41 ETMEGG-RPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKT 99
Query: 3897 IQLLQCICKNCSSILLTPEQHR-----VFSRQVMNPNLDYLHRKALHKRIVAACKKGSTC 3733
I++L+C+C CS +L++P + V S+ L Y++ K I C+ G
Sbjct: 100 IKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLAYVYDLCKGKTI---CEGGEDM 156
Query: 3732 S-----------------HCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQE 3604
CG ++++ G L + P + K E
Sbjct: 157 DLTKDNQQPDPNKKPGHGGCGHYQPSIRRT-GLDLSAEWKHPNEDSQEKKIVVSAERVWE 215
Query: 3603 VGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRP 3424
+ H+ + +L + P+ +++T +PVPP+ +RP
Sbjct: 216 ILKHITDEECFILG---------------------MDPKYARPDWMIVTVLPVPPLAVRP 254
Query: 3423 SVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSE 3244
+VV A +DD+T KL +I+ N+ L+K++ GA + + E + LQ A ++++
Sbjct: 255 AVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDND 313
Query: 3243 MSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVP 3067
M G+P MQ + ++A RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRIDQVGVP
Sbjct: 314 MPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
Query: 3066 IHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKN 2887
+A LTFPE+V NI++M++LV G+ +PGA Y+V L + K +L +
Sbjct: 374 RSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDL--H 431
Query: 2886 LRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGD 2707
L+ G +ERHL D+D+V+FNRQP+LHK+S+M HR KV+P TFR N +PYNADFDGD
Sbjct: 432 LQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGD 491
Query: 2706 EMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAE 2527
EMNLH+PQ+ E +AE + +ITP++ +P++ +QD +T +T +D F+ R +
Sbjct: 492 EMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQ 551
Query: 2526 VYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNK 2347
V L K LWTGKQ+ LII P + + + T ++
Sbjct: 552 VMNLLMFLPTWDGKMPQPCILKPR------PLWTGKQIFSLII-PGNVNMIRTHSTHPDE 604
Query: 2346 SYTGNLELCSK-DSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWR 2170
G + S D+ V++ + L+ G L K LG+S+ ++ ++ + G + A
Sbjct: 605 EDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAG-SLLHICFLELGHEIAGRFYGN 663
Query: 2169 LARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGC 1990
+ + +L G SIGIGD Q E + I++ +L+ PG
Sbjct: 664 IQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGN 723
Query: 1989 TEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQ 1810
T +T E+ + R L+ RD G ++L++YN M V GSKGS INISQ+IACVGQQ
Sbjct: 724 TLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 783
Query: 1809 AISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTA 1630
+ G R P GF +R+LPHF + PE++GFV NS+ +GLTP+EF+FH MGGREGL+DTA
Sbjct: 784 NVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 843
Query: 1629 VKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDF 1450
VKTAETGY+QRRL+K +E + +YDGTVR+SVG +I+ +GEDGL ++E ++ V
Sbjct: 844 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKL 903
Query: 1449 TH-VLEHAKNIQTTKEQPIPVDKLDEVLK-----AEIQKKFKGKY---VHFADKLSEYIT 1297
++ E + E+ + DEV+K +E + + ++ +H D L
Sbjct: 904 SNKAFEKRFKFDWSNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMHDRDNLRVIFP 963
Query: 1296 QTEIK-------KSKKWQNGKA-HCGNHETADLKTKESCKICKNL--------------- 1186
+ K + W K H DL K K L
Sbjct: 964 NGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADRISK 1023
Query: 1185 EAYKTSLLANSCLTKTQLCS----------------FIELCYYKVARAITEPGTAVGAIA 1054
+A + + L CL ++ LC+ I + +A PG VGA+A
Sbjct: 1024 QANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALA 1083
Query: 1053 ATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLD--PYDE 880
A S+GEP+TQMTL TFHFAGV+S N+T GVPR+KEIIN K P +T L D
Sbjct: 1084 AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDA 1143
Query: 879 SLARRVKARIEKTTLGEICDYIEEVYLPD----------------------------DYF 784
A+ V R+E TTL ++ Y PD +
Sbjct: 1144 EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWL 1203
Query: 783 LLVKLNSKRI--RLLQLEVCMESISYAIATSKVC--------PQMRGCKIVAHGKTMMAI 634
L ++L+ KR+ + L +E E I+ C + +I+ + +
Sbjct: 1204 LRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQD 1263
Query: 633 RPPSTSKLSKTMTMQILKYS-LANVVVKGIPSVNRCVIH---ADEKK-------GDF--- 496
+ K+ M ++ ++ + L+++ ++GI ++ + +H D KK G+F
Sbjct: 1264 EDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAI 1323
Query: 495 --YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGI 322
+ L +GT VLS VDP +T+ N+ + VLGIEA R + E+ A + +G+
Sbjct: 1324 GEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGL 1383
Query: 321 GLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVI 142
++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D L +AA ++ D +
Sbjct: 1384 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPM 1443
Query: 141 HGVSECIIMGTPMTVGTGTFKLMQKYDK 58
GVSE IIMG +GTG F L+ +K
Sbjct: 1444 RGVSENIIMGQLPKMGTGCFDLLLDAEK 1471
>gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II
complex [Drosophila subobscura]
gi|9587179|gb|AAF89193.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587181|gb|AAF89194.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587183|gb|AAF89195.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587185|gb|AAF89196.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587187|gb|AAF89197.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587189|gb|AAF89198.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587191|gb|AAF89199.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587193|gb|AAF89200.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587195|gb|AAF89201.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587197|gb|AAF89202.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587199|gb|AAF89203.1| RNA polymerase II largest subunit
[Drosophila subobscura]
Length = 1889
Score = 709 bits (1831), Expect = 0.0
Identities = 489/1468 (33%), Positives = 739/1468 (50%), Gaps = 128/1468 (8%)
Frame = -1
Query: 4077 EDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLT 3898
E +EG +P G +DP+ GV T+C GHFG+ DL PVFHIGF T
Sbjct: 41 ETMEGG-RPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKT 99
Query: 3897 IQLLQCICKNCSSILLTPEQHR-----VFSRQVMNPNLDYLHRKALHKRIVAACKKGSTC 3733
I++L+C+C CS +L++P + V S+ L Y++ K I C+ G
Sbjct: 100 IKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLAYVYDLCKGKTI---CEGGEDM 156
Query: 3732 S-----------------HCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQE 3604
CG ++++ G L + P + K E
Sbjct: 157 DLTKDNQQPDPNKKPGHGGCGHYQPSIRRT-GLDLSAEWKHPNEDSQEKKIVVSAERVWE 215
Query: 3603 VGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRP 3424
+ H+ + +L + P+ +++T +PVPP+ +RP
Sbjct: 216 ILKHITDEECFILG---------------------MDPKYARPDWMIVTVLPVPPLAVRP 254
Query: 3423 SVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSE 3244
+VV A +DD+T KL +I+ N+ L+K++ GA + + E + LQ A ++++
Sbjct: 255 AVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDND 313
Query: 3243 MSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVP 3067
M G+P MQ + ++A RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRIDQVGVP
Sbjct: 314 MPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 373
Query: 3066 IHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKN 2887
+A LTFPE+V NI++M++LV G+ +PGA Y+V L + K +L +
Sbjct: 374 RSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDL--H 431
Query: 2886 LRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGD 2707
L+ G +ERHL D+D+V+FNRQP+LHK+S+M HR KV+P TFR N +PYNADFDGD
Sbjct: 432 LQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGD 491
Query: 2706 EMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAE 2527
EMNLH+PQ+ E +AE + +ITP++ +P++ +QD +T +T +D F+ R +
Sbjct: 492 EMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQ 551
Query: 2526 VYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNK 2347
V L K LWTGKQ+ LII P + + + T ++
Sbjct: 552 VMNLLMFLPTWDGKMPQPCILKPR------PLWTGKQIFSLII-PGNVNMIRTHSTHPDE 604
Query: 2346 SYTGNLELCSK-DSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWR 2170
G + S D+ V++ + L+ G L K LG+S+ ++ ++ + G + A
Sbjct: 605 EDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAG-SLLHICFLELGHEIAGRFYGN 663
Query: 2169 LARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGC 1990
+ + +L G SIGIGD Q E + I++ +L+ PG
Sbjct: 664 IQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGN 723
Query: 1989 TEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQ 1810
T +T E+ + R L+ RD G ++L++YN M V GSKGS INISQ+IACVGQQ
Sbjct: 724 TLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ 783
Query: 1809 AISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTA 1630
+ G R P GF +R+LPHF + PE++GFV NS+ +GLTP+EF+FH MGGREGL+DTA
Sbjct: 784 NVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 843
Query: 1629 VKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDF 1450
VKTAETGY+QRRL+K +E + +YDGTVR+SVG +I+ +GEDGL ++E ++ V
Sbjct: 844 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKL 903
Query: 1449 TH-VLEHAKNIQTTKEQPIPVDKLDEVLK-----AEIQKKFKGKY---VHFADKLSEYIT 1297
++ E + E+ + DEV+K +E + + ++ +H D L
Sbjct: 904 SNKAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLRVIFP 963
Query: 1296 QTEIK-------KSKKWQNGKA-HCGNHETADLKTKESCKICKNL--------------- 1186
+ K + W K H DL K K L
Sbjct: 964 NGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADRISK 1023
Query: 1185 EAYKTSLLANSCLTKTQLCS----------------FIELCYYKVARAITEPGTAVGAIA 1054
+A + + L CL ++ LC+ I + +A PG VGA+A
Sbjct: 1024 QANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALA 1083
Query: 1053 ATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLD--PYDE 880
A S+GEP+TQMTL TFHFAGV+S N+T GVPR+KEIIN K P +T L D
Sbjct: 1084 AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDA 1143
Query: 879 SLARRVKARIEKTTLGEICDYIEEVYLPD----------------------------DYF 784
A+ V R+E TTL ++ Y PD +
Sbjct: 1144 EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWL 1203
Query: 783 LLVKLNSKRI--RLLQLEVCMESISYAIATSKVC--------PQMRGCKIVAHGKTMMAI 634
L ++L+ KR+ + L +E E I+ C + +I+ + +
Sbjct: 1204 LRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQD 1263
Query: 633 RPPSTSKLSKTMTMQILKYS-LANVVVKGIPSVNRCVIH---ADEKK-------GDF--- 496
+ K+ M ++ ++ + L+++ ++GI ++ + +H D KK G+F
Sbjct: 1264 EDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAI 1323
Query: 495 --YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGI 322
+ L +GT VLS VDP +T+ N+ + VLGIEA R + E+ A + +G+
Sbjct: 1324 GEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGL 1383
Query: 321 GLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVI 142
++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D L +AA ++ D +
Sbjct: 1384 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPM 1443
Query: 141 HGVSECIIMGTPMTVGTGTFKLMQKYDK 58
GVSE IIMG +GTG F L+ +K
Sbjct: 1444 RGVSENIIMGQLPKMGTGCFDLLLDAEK 1471
>gi|15233338|ref|NP_195305.1| DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) [Arabidopsis thaliana]
gi|12644149|sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II
largest subunit
gi|25288404|pir||G85422 hypothetical protein AT4g35800 [imported] -
Arabidopsis thaliana
gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6)
II largest chain [Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6)
II largest chain [Arabidopsis thaliana]
Length = 1840
Score = 709 bits (1831), Expect = 0.0
Identities = 489/1481 (33%), Positives = 754/1481 (50%), Gaps = 118/1481 (7%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
KV V+F + +RQ + + + +++ E K +P G D ++G
Sbjct: 14 KVRVVQFGILSPDEIRQMSVIHVEHSETTE----KGKPKVGGLSDTRLGTIDRKVKCETC 69
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 3805
+C GHFGY +L P++H+GF K + +++C+C NCS IL E R RQ M
Sbjct: 70 MANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKIL-ADEVCRSLFRQAMKI 128
Query: 3804 NLDYLHRKALHKRIVAACKKGSTC----------SHCGLKNGTVKKAVGAVLKIAFASPV 3655
+ K K+I+ ACK + C SH + VKK+ G P
Sbjct: 129 K----NPKNRLKKILDACKNKTKCDGGDDIDDVQSHS--TDEPVKKSRGGC---GAQQPK 179
Query: 3654 SVDELGKFATMFSSNQEVGDHVRKM-----KFTLLNPLFVQKLFSNIKEGDIPVLMVRSG 3490
E K + ++ D ++ + L V + I + D +L
Sbjct: 180 LTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNP- 238
Query: 3489 EEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAP 3310
+ P+ ++L +P+PP +RPSV+ + + +EDD+T +L I+ N+ LK+ +++GAP
Sbjct: 239 KFARPDWMILEVLPIPPPPVRPSVMMDATS-RSEDDLTHQLAMIIRHNENLKRQEKNGAP 297
Query: 3309 SKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRV 3133
+ + E + LQ A Y ++E+ G P Q R +++ RLK K+GR RGNL GKRV
Sbjct: 298 AHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRV 357
Query: 3132 DFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG---A 2962
DFS RTVI+PDP + ID++GVP +A+ LT+PE V NIE++++LV G PG A
Sbjct: 358 DFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGA 417
Query: 2961 NYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRA 2782
Y++ + G + L+Y K+ ++L +G +ERHL D D VLFNRQPSLHK+SIM HR
Sbjct: 418 KYII-RDDGQRLDLRYLKKSS-DQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRI 475
Query: 2781 KVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPL 2602
++MP TFR N +PYNADFDGDEMN+H+PQ++E +AE ELM V +++P++ P+
Sbjct: 476 RIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPV 535
Query: 2601 VAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTG 2422
+ +QD + G +T +DTF+ + D K LWTG
Sbjct: 536 MGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPR------PLWTG 589
Query: 2421 KQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSS 2242
KQ+ LII ++L + + T + D+ V I LLAG L K LG+S
Sbjct: 590 KQVFNLIIP----KQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTS 645
Query: 2241 SKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVD 2062
+ ++ +++ + G DAA + + +L GF+IGIGD + + + +
Sbjct: 646 NG-SLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETIS 704
Query: 2061 NGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPL 1882
N + I++ + +L +PG T +T E+ + + L+ RD AG ++L++ N
Sbjct: 705 NAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLK 764
Query: 1881 TMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSF 1702
M GSKGSFINISQM ACVGQQ + G R P GF+ R+LPHF + PE++GFV NS+
Sbjct: 765 AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSY 824
Query: 1701 YSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVI 1522
GLTP EFFFH MGGREGL+DTAVKT+ETGY+QRRLVK +ED+ YDGTVR+S+GDVI
Sbjct: 825 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 884
Query: 1521 EFVFGEDGLDPAMMEA-KDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLK-----AE 1360
+F++GEDG+D +E+ K S+ + + E P DE L+ E
Sbjct: 885 QFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRE 944
Query: 1359 IQKKFKGKYVHFADKLSEYITQTEIKKSKKWQ---NGKAHCGNHETA---DL-------- 1222
++ F +Y + T+ W N K H N + DL
Sbjct: 945 LRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHP 1004
Query: 1221 --------KTKESCKI-----CKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVAR---- 1093
K +E + ++EA K + L + L ++ L S L YK++R
Sbjct: 1005 VEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFE 1064
Query: 1092 ------------AITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKE 949
++ PG +G +AA SIGEP+TQMTL TFH+AGV++ N+T GVPR++E
Sbjct: 1065 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1124
Query: 948 IINAVKTISTPIITAALLDPYDESL--ARRVKARIEKTTLGEICDYIEEVYLPDDYFLLV 775
IIN K I TP ++ L +S A+ V+ +E TTL + E Y PD ++
Sbjct: 1125 IINVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTII 1184
Query: 774 KLNSKRIR------------------LLQLEVCME-----SISYAIATSKVCPQM----- 679
+ + + +R LL++E+ E +S A K+ +
Sbjct: 1185 EEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLT 1244
Query: 678 ------RGCKIVAHGKTMMAIRP----PSTSKLSKTMTMQILKYSLANVVVKGIPSVNRC 529
K++ + M P S +I L + ++GIP +N+
Sbjct: 1245 CIFNDDNAQKLILRIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKV 1304
Query: 528 VI------HADEKKG----DFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIE 379
I DE+ G + + L EG + +V+ VDP++T N+ + + +VLGIE
Sbjct: 1305 FIKQVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIE 1364
Query: 378 AARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASF 199
A R +++E+ + G ++ RH+ +L D MTYRG ++ ITR+G+ + L+ SF
Sbjct: 1365 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSF 1424
Query: 198 EKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKL 76
E+T+D L +AA +++ D + GV+E I++G +GTG +L
Sbjct: 1425 EETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCEL 1465
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit
[Saccharomyces cerevisiae]
Length = 1726
Score = 708 bits (1828), Expect = 0.0
Identities = 482/1447 (33%), Positives = 747/1447 (51%), Gaps = 117/1447 (8%)
Frame = -1
Query: 4032 DPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSIL 3853
DP++G +C GHFG+ DL PVFH+GF ++ +C+C +C +L
Sbjct: 55 DPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLL 114
Query: 3852 LTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSH----------------CG 3721
L ++H RQ L K I CK C CG
Sbjct: 115 L--DEHNELMRQA----LAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCG 168
Query: 3720 LKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKL 3541
T++K D L K + ++ GD + + +L+ + +
Sbjct: 169 NTQPTIRK----------------DGL-KLVGSWKKDRATGD-ADEPELRVLSTEEILNI 210
Query: 3540 FSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSV-VSEVKAGTTEDDVTMKLM 3364
F +I D L + P ++LT +PVPP +RPS+ +E + G EDD+T KL
Sbjct: 211 FKHISVKDFTSLGFNEVFSR-PEWMILTCLPVPPPPVRPSISFNESQRG--EDDLTFKLA 267
Query: 3363 EIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQ 3187
+I+ N L+ + +GAP + E LQ A Y++++++G P +Q R +++
Sbjct: 268 DILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRA 327
Query: 3186 RLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEK 3007
RLKGK+GR RGNL GKRVDFS RTVIS DPNL +DQVGVP +A TLT+PE+V NI++
Sbjct: 328 RLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDR 387
Query: 3006 MRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFN 2827
+ QLV NG + HPGA Y++ + +G++ L+Y KR + L+ G +ERH+ DND VLFN
Sbjct: 388 LTQLVRNGPNEHPGAKYVI-RDSGDRIDLRYSKRAGDIQ-LQYGWKVERHIMDNDPVLFN 445
Query: 2826 RQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELM 2647
RQPSLHK+S+M+HR KV+P TFR N +PYNADFDGDEMNLH+PQ+ E +AE S+L
Sbjct: 446 RQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLC 505
Query: 2646 NVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXX 2467
V +++P+S +P + +QD + G LT +DTF+ +V + D T
Sbjct: 506 AVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAI 565
Query: 2466 XXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNS 2287
LW+GKQ++ + I N + G L KD+ ++I +
Sbjct: 566 IKPK------PLWSGKQILSVAIP---------NGIHLQRFDEGTTLLSPKDNGMLIIDG 610
Query: 2286 VLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDV 2107
++ G ++K +GSS+ + +++ R+ G + ++ +L + GFS GIGD
Sbjct: 611 QIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDT 669
Query: 2106 RPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHA 1927
+RE + + K KE + L A+ G T E+ E ++R L+ RD A
Sbjct: 670 IADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKA 729
Query: 1926 GQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFER 1747
G++ NL N M + GSKGSFINI+QM ACVGQQ++ G R GF +R+LPHF +
Sbjct: 730 GRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSK 789
Query: 1746 KKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLC 1567
+PE+KGFV NS+ GLTP EFFFH MGGREGL+DTAVKTAETGY+QRRLVK LED+
Sbjct: 790 DDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIM 849
Query: 1566 ASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKD-----GS-----------VVDFTHVLE 1435
YD T R+S+G+VI+F++GEDG+D A +E + GS +++ H L+
Sbjct: 850 VHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLD 909
Query: 1434 HAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKG-KYVH--FADKLSEYITQTEIKKSKKWQ 1264
++ + + + KL +L E ++ K K++ F D + + I++ +
Sbjct: 910 --PSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNA 967
Query: 1263 NGKAHCGNHETADLKTKESCKICKNLEAY------KTSLLANS---------CLTKTQLC 1129
H + + +DL K+ K+L+ K ++ N+ CL +++L
Sbjct: 968 QQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLA 1027
Query: 1128 SFIELCYYKVA----------------RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFA 997
+ L Y++ R++ PG VG +AA SIGEP+TQMTL TFHFA
Sbjct: 1028 TRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFA 1087
Query: 996 GVASMNITQGVPRIKEIINAVKTISTPIITAALLDPY--DESLARRVKARIEKTTLGEIC 823
GVAS +T GVPR+KEI+N K + TP +T L + D+ A+ +++ IE TTL +
Sbjct: 1088 GVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVT 1147
Query: 822 DYIEEVYLPDDYFLLVKLNSKRIR--------------------LLQLEVCMESISYAIA 703
E Y PD ++ + + I+ LL+LE+ +++
Sbjct: 1148 IASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDL 1207
Query: 702 T-----SKVCPQMRGCKIVAHGK--------TMMAIRPPS----TSKLSKTMTMQILKYS 574
T ++ + V + +RP S T M +I
Sbjct: 1208 TMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTM 1267
Query: 573 LANVVVKGIPSVNRCVIHADEKK-----GDF-----YSLLVEGTDFRSVLSSVGVDPRKT 424
L N+ ++G+ ++ R V+ ++K G++ + L +G + V++ G+DP +
Sbjct: 1268 LENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRI 1327
Query: 423 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 244
N+ + + +VLGIEA R+ + E+ + + G ++ RH+ LL DVMT +G + +TR+
Sbjct: 1328 YTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRH 1387
Query: 243 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 64
G + L+ SFE+T++ LFEA ++ D GVSE +I+G +GTG F +M
Sbjct: 1388 GFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVM--I 1445
Query: 63 DKKAVLK 43
D+++++K
Sbjct: 1446 DEESLVK 1452
>gi|6320061|ref|NP_010141.1| RNA polymerase II large subunit; Rpo21p
[Saccharomyces cerevisiae]
gi|2507347|sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II
largest subunit (B220)
gi|2144431|pir||RNBY2L DNA-directed RNA polymerase (EC 2.7.7.6) II
215K chain - yeast (Saccharomyces cerevisiae)
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At
3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At
2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna
Polymerase Ii Complexed With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated
Elongation Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
Length = 1733
Score = 708 bits (1828), Expect = 0.0
Identities = 482/1447 (33%), Positives = 747/1447 (51%), Gaps = 117/1447 (8%)
Frame = -1
Query: 4032 DPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSIL 3853
DP++G +C GHFG+ DL PVFH+GF ++ +C+C +C +L
Sbjct: 55 DPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLL 114
Query: 3852 LTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSH----------------CG 3721
L ++H RQ L K I CK C CG
Sbjct: 115 L--DEHNELMRQA----LAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCG 168
Query: 3720 LKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKL 3541
T++K D L K + ++ GD + + +L+ + +
Sbjct: 169 NTQPTIRK----------------DGL-KLVGSWKKDRATGD-ADEPELRVLSTEEILNI 210
Query: 3540 FSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSV-VSEVKAGTTEDDVTMKLM 3364
F +I D L + P ++LT +PVPP +RPS+ +E + G EDD+T KL
Sbjct: 211 FKHISVKDFTSLGFNEVFSR-PEWMILTCLPVPPPPVRPSISFNESQRG--EDDLTFKLA 267
Query: 3363 EIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQ 3187
+I+ N L+ + +GAP + E LQ A Y++++++G P +Q R +++
Sbjct: 268 DILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRA 327
Query: 3186 RLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEK 3007
RLKGK+GR RGNL GKRVDFS RTVIS DPNL +DQVGVP +A TLT+PE+V NI++
Sbjct: 328 RLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDR 387
Query: 3006 MRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFN 2827
+ QLV NG + HPGA Y++ + +G++ L+Y KR + L+ G +ERH+ DND VLFN
Sbjct: 388 LTQLVRNGPNEHPGAKYVI-RDSGDRIDLRYSKRAGDIQ-LQYGWKVERHIMDNDPVLFN 445
Query: 2826 RQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELM 2647
RQPSLHK+S+M+HR KV+P TFR N +PYNADFDGDEMNLH+PQ+ E +AE S+L
Sbjct: 446 RQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLC 505
Query: 2646 NVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXX 2467
V +++P+S +P + +QD + G LT +DTF+ +V + D T
Sbjct: 506 AVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAI 565
Query: 2466 XXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNS 2287
LW+GKQ++ + I N + G L KD+ ++I +
Sbjct: 566 IKPK------PLWSGKQILSVAIP---------NGIHLQRFDEGTTLLSPKDNGMLIIDG 610
Query: 2286 VLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDV 2107
++ G ++K +GSS+ + +++ R+ G + ++ +L + GFS GIGD
Sbjct: 611 QIIFGVVEKKTVGSSNG-GLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDT 669
Query: 2106 RPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHA 1927
+RE + + K KE + L A+ G T E+ E ++R L+ RD A
Sbjct: 670 IADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKA 729
Query: 1926 GQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFER 1747
G++ NL N M + GSKGSFINI+QM ACVGQQ++ G R GF +R+LPHF +
Sbjct: 730 GRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSK 789
Query: 1746 KKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLC 1567
+PE+KGFV NS+ GLTP EFFFH MGGREGL+DTAVKTAETGY+QRRLVK LED+
Sbjct: 790 DDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIM 849
Query: 1566 ASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKD-----GS-----------VVDFTHVLE 1435
YD T R+S+G+VI+F++GEDG+D A +E + GS +++ H L+
Sbjct: 850 VHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLD 909
Query: 1434 HAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKG-KYVH--FADKLSEYITQTEIKKSKKWQ 1264
++ + + + KL +L E ++ K K++ F D + + I++ +
Sbjct: 910 --PSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNA 967
Query: 1263 NGKAHCGNHETADLKTKESCKICKNLEAY------KTSLLANS---------CLTKTQLC 1129
H + + +DL K+ K+L+ K ++ N+ CL +++L
Sbjct: 968 QQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLA 1027
Query: 1128 SFIELCYYKVA----------------RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFA 997
+ L Y++ R++ PG VG +AA SIGEP+TQMTL TFHFA
Sbjct: 1028 TRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFA 1087
Query: 996 GVASMNITQGVPRIKEIINAVKTISTPIITAALLDPY--DESLARRVKARIEKTTLGEIC 823
GVAS +T GVPR+KEI+N K + TP +T L + D+ A+ +++ IE TTL +
Sbjct: 1088 GVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVT 1147
Query: 822 DYIEEVYLPDDYFLLVKLNSKRIR--------------------LLQLEVCMESISYAIA 703
E Y PD ++ + + I+ LL+LE+ +++
Sbjct: 1148 IASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDL 1207
Query: 702 T-----SKVCPQMRGCKIVAHGK--------TMMAIRPPS----TSKLSKTMTMQILKYS 574
T ++ + V + +RP S T M +I
Sbjct: 1208 TMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTM 1267
Query: 573 LANVVVKGIPSVNRCVIHADEKK-----GDF-----YSLLVEGTDFRSVLSSVGVDPRKT 424
L N+ ++G+ ++ R V+ ++K G++ + L +G + V++ G+DP +
Sbjct: 1268 LENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRI 1327
Query: 423 NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 244
N+ + + +VLGIEA R+ + E+ + + G ++ RH+ LL DVMT +G + +TR+
Sbjct: 1328 YTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRH 1387
Query: 243 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 64
G + L+ SFE+T++ LFEA ++ D GVSE +I+G +GTG F +M
Sbjct: 1388 GFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVM--I 1445
Query: 63 DKKAVLK 43
D+++++K
Sbjct: 1446 DEESLVK 1452
>gi|31226322|ref|XP_317690.1| ENSANGP00000010305 [Anopheles gambiae]
gi|21300163|gb|EAA12308.1| ENSANGP00000010305 [Anopheles gambiae str.
PEST]
Length = 1877
Score = 707 bits (1824), Expect = 0.0
Identities = 485/1455 (33%), Positives = 752/1455 (51%), Gaps = 115/1455 (7%)
Frame = -1
Query: 4077 EDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLT 3898
E +EG +P G +DP+ GV T+C GHFG+ DL PVFHIGF T
Sbjct: 39 ETMEGG-RPKLCGLMDPRQGVIERTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKT 97
Query: 3897 IQLLQCICKNCSSILLTPEQHRVF-----SRQVMNPNLDYLHRKALHKRIVAACKKGSTC 3733
I++L+C+C CS +L++P+ ++ S+ L Y++ K+I C+ G
Sbjct: 98 IKILRCVCFYCSKMLVSPQNPKIKEIVLKSKGQPRKRLAYVYDLCKGKKI---CEGGEDM 154
Query: 3732 --SHCGLKNGTVKKAVGAVLKIAFA-SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLN 3562
S +G K+ G + +D + ++ + NQE V +
Sbjct: 155 DMSKEPTADGAKKQGHGGCGHYQPSIRRTGLDLMAEWKDVNDENQEKKIQVSAER----- 209
Query: 3561 PLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDD 3382
V ++ +I + + VL + + P+ +++T +PVPP+ +RP+VV A +DD
Sbjct: 210 ---VYEILKHITDEECFVLGM-DPKFARPDWMIITVLPVPPLAVRPAVVM-FGATKNQDD 264
Query: 3381 VTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RA 3205
+T KL +I+ N+ LKK++ GA + + E + LQ A ++++M G+P MQ +
Sbjct: 265 LTHKLSDIIKANNELKKNEATGAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKP 324
Query: 3204 MRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVN 3025
++A RLKGK+GR RGNL GKRVDFS RTVI+PDPNLRIDQVGVP VA +TFPE+V
Sbjct: 325 LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVT 384
Query: 3024 ASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDN 2845
NI++M++LV G+ +PGA Y+V L + K +L +L+ G +ERHL D+
Sbjct: 385 PFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDL--HLQCGYKVERHLRDD 442
Query: 2844 DVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKA 2665
D+V+FNRQP+LHK+S+M HR KV+P TFR N +PYNADFDGDEMNLH+PQ+ E +A
Sbjct: 443 DLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 502
Query: 2664 EASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAK 2485
E + +ITP++ +P++ +QD +T +T +D F+ + ++ L K
Sbjct: 503 EIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPTWDGK 562
Query: 2484 KQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSK-DS 2308
LWTGKQ+ LII P + + + T ++ G + S D+
Sbjct: 563 MPQPAILKPK------PLWTGKQIFTLII-PGNVNMIRTHSTHPDEEDDGPYKWISPGDT 615
Query: 2307 YVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGF 2128
V++ + L+ G L K LG+S+ ++ +++ + G + A + + +L G
Sbjct: 616 KVMVEHGDLIMGILCKKTLGTSAG-SLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGH 674
Query: 2127 SIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILREL 1948
SIGIGD Q E + + I++ +L+ PG T +T E+ + R L
Sbjct: 675 SIGIGDTIADPQTYAEIQRAIKKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRIL 734
Query: 1947 STIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEER 1768
+ RD G ++L++YN M V GSKGS INISQ+IACVGQQ + G R P GF +R
Sbjct: 735 NDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 794
Query: 1767 SLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLV 1588
+LPHF + PE++GFV NS+ +GLTPTEF+FH MGGREGL+DTAVKTAETGY+QRRL+
Sbjct: 795 TLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLI 854
Query: 1587 KCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTH-VLEHAKNIQTT 1411
K +E + +YDGTVR+SVG +I+ +GEDGL +E ++ + ++ V E T
Sbjct: 855 KAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPT 914
Query: 1410 KEQPIPVDKLDEVLK-----AEIQKKFKGKYVH-----------FADKLSEYITQTEIKK 1279
E+ + ++V+K + + ++ + +Y F + S+ + +++
Sbjct: 915 NERTLRRIFNEDVIKELTETSSVIQEIEAEYEQLLRDREALRQIFPNGDSKVVLPCNLQR 974
Query: 1278 SKKWQNGKA-HCGNHETADLKTKESCKICKNL---------------EAYKTSLLANSCL 1147
W K H DL + + ++L +A + + L CL
Sbjct: 975 -MIWNVQKIFHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTDRLSKQANENATLLFQCL 1033
Query: 1146 TKTQLCS----------------FIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTL 1015
++ LC+ I + +A PG VGA+AA S+GEP+TQMTL
Sbjct: 1034 VRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTL 1093
Query: 1014 KTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLD--PYDESLARRVKARIEKT 841
TFHFAGV+S N+T GVPR+KEIIN K P +T L D A+ V R+E T
Sbjct: 1094 NTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAEKAKNVLCRLEHT 1153
Query: 840 TLGEICDYIEEVYLPD----------------------------DYFLLVKLNSKRI--R 751
TL ++ Y PD + L ++L+ KR+ +
Sbjct: 1154 TLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDK 1213
Query: 750 LLQLEVCMESISYAIATSKVC--------PQMRGCKIVAHGKTMMAIRPPSTSKLSKTMT 595
L +E E I+ C + +I+ + K+ M
Sbjct: 1214 KLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNEDNKFQENEEENMDKMEDDMF 1273
Query: 594 MQILKYS-LANVVVKGIPSVNRCVIH---ADEKK-------GDF-----YSLLVEGTDFR 463
++ ++ + L+++ ++GI ++ + +H D KK G+F + L +GT
Sbjct: 1274 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITPEGEFKPIGEWLLETDGTSMM 1333
Query: 462 SVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADV 283
VLS VDP +T N+ + VLGIEA R + E+ + +G+ ++ RH+ LL DV
Sbjct: 1334 KVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDV 1393
Query: 282 MTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPM 103
MT +G ++ ITR+G+ + L+ SFE+T+D L +AA ++ D + GVSE II+G
Sbjct: 1394 MTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLNDAAAHAEVDPMRGVSENIILGQLP 1453
Query: 102 TVGTGTFKLMQKYDK 58
+GTG F L+ +K
Sbjct: 1454 RMGTGCFDLLLDAEK 1468
>gi|21280517|gb|AAM45151.1| RNA polymerase II largest subunit
[Naegleria gruberi]
Length = 1590
Score = 706 bits (1823), Expect = 0.0
Identities = 491/1465 (33%), Positives = 743/1465 (50%), Gaps = 155/1465 (10%)
Frame = -1
Query: 3969 DCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYL 3790
+C GHFG+ + PVF++ F +++LQ +C +C +L S Q + ++
Sbjct: 1 ECPGHFGHVRIH-PVFNVLFINTVVKVLQSVCIHCGKLLADKS-----SLQFKKAS-KFV 53
Query: 3789 HRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKI-------AFASPVSVDELGKF 3631
+R+ K ++ C+K G K + +S D L F
Sbjct: 54 NRRKRFKEMIDLCRKDKCIIETGNKENEQNQEANIDPTFQPRNGCGGLQPKISRDGLKIF 113
Query: 3630 ATMFS-SNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTR 3454
A ++ E + K + T L ++F I D+ +L + P ++LT
Sbjct: 114 AEYKKDTSAEAKQELTKQELTAERAL---QIFKRIPAEDLELLGFDK-DNARPEWMILTC 169
Query: 3453 MPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQ 3274
+P+PP +RPSV A +EDD+T KL +I+ N ++K+++ G P + E LQ
Sbjct: 170 LPIPPPQVRPSV-HHGSADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQ 228
Query: 3273 IQCALYINSEMSGLPP-DMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDP 3097
CA Y+N+E G+P + R +++ QRLKGK+GR RGNL GKRVDFS RTVI+ DP
Sbjct: 229 YHCATYVNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSARTVITADP 288
Query: 3096 NLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLK 2917
N+ IDQVGVP VA +T PEIV N E++ +LV NG +PGA Y++ ++ G + L+
Sbjct: 289 NIDIDQVGVPRTVASNMTVPEIVTPFNFERLNELVTNGPLTYPGAKYVI-REDGTRIDLR 347
Query: 2916 Y--GKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNEC 2743
+ GK ++ + L G +ERHL D DV+LFNRQPSLHK+S+M HR KVMP TFR N
Sbjct: 348 FASGKANDQIQ-LEYGYKVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLS 406
Query: 2742 ACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYL 2563
TPYNADFDGDEMNLH+PQ+ + KAE EL V N+ITP+S P++A +QD +
Sbjct: 407 VTTPYNADFDGDEMNLHVPQSLQTKAELLELTMVPRNIITPQSNRPVIALVQDTLLAASK 466
Query: 2562 LTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELI---IRP 2392
LT +D F+ + + LID K LWTGKQL + +
Sbjct: 467 LTRRDVFIAKDLMMNCLMHLIDFDGKLPVPAILKPK------PLWTGKQLFTFLLPKVNL 520
Query: 2391 DKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLM 2212
+ S +LT K ++ D+ V+I L++G LDK LGSS ++ ++++
Sbjct: 521 ENTSSTHEDLTDKKDHLDHDIP--EFDTKVLIDRGELVSGVLDKKSLGSSHG-SLIHIIV 577
Query: 2211 RDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYI 2032
+ G + + + R+ +L NRGFSIGIGD + + + + + +
Sbjct: 578 NEKGVNEGKKFLGQCQRVINHWLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIV 637
Query: 2031 KELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGS 1852
K+ +EGKL+A+ G T +++ E+ + + L+ R+ AG ++L N +M GSKGS
Sbjct: 638 KDAQEGKLRAEAGRTIQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGS 697
Query: 1851 FINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFF 1672
+INISQ+IACVGQQ + G R P GF R+LPHF + PE++GFVANS+ GLTP EFF
Sbjct: 698 YINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFF 757
Query: 1671 FHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLD 1492
FHTMGGREGL+DTAVKT+ETGY+QRRL+K +ED+ YDGTVR + G+V++F++GEDG+D
Sbjct: 758 FHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMD 817
Query: 1491 PAMMEAKD--------------------GSVVDFTHVLEHAKNIQT---TKEQPIPVDKL 1381
+E++ GS FT+ E + ++ + KE I
Sbjct: 818 AHKVESQSIDIMNLSDAKFQDKYWYNSLGSSPSFTNPTESSVSMPSGGILKESFISTKVY 877
Query: 1380 DEVLK--AEIQKKFKGKYVHFADKLSEYITQTEI------------KKSKKWQNGKAHCG 1243
DE+LK A K + +Y + +I +TEI + +N + G
Sbjct: 878 DEILKDPATYLSKVREEYKTLME--DRHILRTEIFPNAENKIVMPVNLKRIIKNAQKEYG 935
Query: 1242 NH----ETADLK----TKESCKICKNLEA----------------------------YKT 1171
H + +D+ ++ K+C +L +K
Sbjct: 936 IHPSIGKPSDMNPIYVIEKIKKLCDDLVVIKGTDELSTEAQTNATLLFSMFLRSTFFFKG 995
Query: 1170 SLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGV 991
L N L K L ++ + + +PG VG++AA SIGEP+TQMTL TFHFAGV
Sbjct: 996 CSLKNCVLLKKPLTFWLVKLELRFHNCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGV 1055
Query: 990 ASMNITQGVPRIKEIINAVKTISTPIITAALLDPY--DESLARRVKARIEKTTLGEICDY 817
+S N+T GVPR+KE++N K I TP +T L + Y D A+ VK +E TTLG +
Sbjct: 1056 SSKNVTLGVPRLKELLNVAKNIKTPGLTIYLNNEYIGDFEKAKMVKEDLEYTTLGHVTAA 1115
Query: 816 IEEVYLPDDYFLLVK-----------------------LNSKRIRL-LQLEVCMESISYA 709
VY P+ +++ LN +R L + ++++ A
Sbjct: 1116 ASIVYDPEPANSVIEEDREFIEELLEELKDTAVLDSTTLNPWSLRFELDKMMMSDTLTMA 1175
Query: 708 IATSKVCPQMRG---C--------KIV----------AHGKTMMAIRPPSTSKLSK---- 604
K+ + + C K++ K + PS L K
Sbjct: 1176 QVAKKIQEEFQNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEE 1235
Query: 603 ---TMTMQILKYSLANVV----VKGIPSVNRCVIHADEKKGDFYS----------LLVEG 475
T++ L+ +N++ +KG + + + + K F S L EG
Sbjct: 1236 DIENSTVEFLRRLESNMLNELALKGYKDLKKVFLREENDKKVFSSSGVATVKQWVLDTEG 1295
Query: 474 TDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVML 295
+ +VLS VD T N+ + DVLGIEA R+ ++ E+ ++ G ++ RH+ +
Sbjct: 1296 CNLLAVLSHPYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAI 1355
Query: 294 LADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIM 115
L DVMT+RG ++ ITR G+ + L+ SFE+T++ L EAA F+ D + GVS +++
Sbjct: 1356 LCDVMTHRGGLMAITRRGINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMV 1415
Query: 114 GTPMTVGTGTFKLMQKYDKKAVLKQ 40
G +GTG F L Y + +LKQ
Sbjct: 1416 GQLAPIGTGCFGL---YLDEELLKQ 1437
>gi|50289967|ref|XP_447415.1| unnamed protein product [Candida
glabrata]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata
CBS138]
Length = 1715
Score = 705 bits (1820), Expect = 0.0
Identities = 486/1448 (33%), Positives = 741/1448 (50%), Gaps = 100/1448 (6%)
Frame = -1
Query: 4086 KLYEDVEGKLQPANYGPL-DPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGF 3910
+L E ++ A G L DP++G +C GHFG+ DL PVFHIGF
Sbjct: 36 RLPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHIGF 95
Query: 3909 FKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCS 3730
++ + +C +C +LL ++H RQ + K + + CK C
Sbjct: 96 ITKIKKVCESLCMHCGKLLL--DEHNEQMRQA----IQIKDPKKRFNAVWSLCKTKMVCE 149
Query: 3729 HCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFV 3550
K + + D L K + ++ GD + + +L+ +
Sbjct: 150 TDVPSEDDPTKLISRGGCGNTQPTIRKDGL-KLVGSWKKDKSTGD-ADEPEQRVLSTEEI 207
Query: 3549 QKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSV-VSEVKAGTTEDDVTM 3373
+F +I D L E P ++LT +PVPP +RPS+ +E + G EDD+T
Sbjct: 208 LNIFKHISPEDSYRLGFNE-EFARPEWMILTVLPVPPPPVRPSISFNESQRG--EDDLTF 264
Query: 3372 KLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRA 3196
KL +I+ N L+ + +GAP + E LQ A Y++++++G P +Q R +++
Sbjct: 265 KLADILKANISLETLEHNGAPHHAVEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKS 324
Query: 3195 FTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASN 3016
RLKGK+GR RGNL GKRVDFS RTVIS DPNL +DQVGVP +A TLT+PE+V N
Sbjct: 325 IRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYN 384
Query: 3015 IEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVV 2836
I+++ QLV NG + HPGA Y++ + G++ L+Y KR + L+ G +ERH+ D+D V
Sbjct: 385 IDRLSQLVRNGPNEHPGAKYVI-RDNGDRIDLRYSKRSGDVQ-LQYGWKVERHIMDDDPV 442
Query: 2835 LFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEAS 2656
LFNRQPSLHK+S+M+HR KV+P TFR N +PYNADFDGDEMNLH+PQ+ E +AE S
Sbjct: 443 LFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELS 502
Query: 2655 ELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQT 2476
+L V +++P+S +P + +QD + G LT +DTFL +V + D T
Sbjct: 503 QLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDQVLNMLYWVPDWDGVIPT 562
Query: 2475 KXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVII 2296
LW+GKQ++ + I KG + + G L KD+ +++
Sbjct: 563 PAIIKPK------PLWSGKQILSVAI--PKGIHLQ-------RFDEGTTLLSPKDNGMLV 607
Query: 2295 RNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGI 2116
+ ++ G +DK +GSSS + +++ R+ G + ++ +L + GFS GI
Sbjct: 608 IDGEIIFGVVDKKTVGSSSG-GLIHVVTREKGPTICARLFGNIQKVVNFWLLHNGFSTGI 666
Query: 2115 GDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIR 1936
GD Q +RE + + K KE + L A+ G T E+ E ++R L+ R
Sbjct: 667 GDTVADGQTMREISETIAEAKQKVEAVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEAR 726
Query: 1935 DHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPH 1756
D AG++ NL N M GSKGSFINI+QM ACVGQQ++ G R GF +R+LPH
Sbjct: 727 DRAGRLAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLPH 786
Query: 1755 FERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLE 1576
F + +PE+KGFV NS+ GLTP EFFFH MGGREGL+DTAVKTAETGY+QRRLVK LE
Sbjct: 787 FSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE 846
Query: 1575 DLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKD-----GSVVDFTHVLEHAKNIQTT 1411
D+ YDGT R+S+G+VI+F++GEDG+D +E + GS F +
Sbjct: 847 DIMVHYDGTTRNSLGNVIQFIYGEDGMDAGHIEKQSLDTMGGSDQAFERRYRIDLLNTSN 906
Query: 1410 KEQPIPVDKLDEVL-KAEIQKKFKGKYVH-----------FADKLSEYITQTEIKKSKKW 1267
+P ++ E++ ++Q +Y F+D S + I++ +
Sbjct: 907 SLEPSLLESGSEIIGDLKVQMALDEEYKQLVKDRRFLRTIFSDGESSWPLPVNIRRIIQN 966
Query: 1266 QNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANS---------------CLTKTQL 1132
+ + +DL E ++L+ L + S CL +++L
Sbjct: 967 AQQTFRIDHTKPSDLTIPEIINSVRDLQDRLLVLRSKSEIIKKAQDDAVTLFCCLLRSRL 1026
Query: 1131 CSFIELCYYKVA----------------RAITEPGTAVGAIAATSIGEPSTQMTLKTFHF 1000
+ L Y++ R+I PG VG +AA SIGEP+TQMTL TFHF
Sbjct: 1027 ATRRVLQEYRLTKEAFEWVLNNVEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHF 1086
Query: 999 AGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPY--DESLARRVKARIEKTTLGEI 826
AGVAS +T GVPR+KEI+N K + TP +T L Y D+ A+ V++ IE TTL +
Sbjct: 1087 AGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPEYSADQEKAKLVRSAIEHTTLKSV 1146
Query: 825 CDYIEEVYLPDDYFLLVKLNSKRIR--------------------LLQLEVCMESISYAI 706
E Y PD ++ + + I+ LL+LE+ +++
Sbjct: 1147 TVASEIYYDPDPRSTVIPEDDEIIQLHFSLLDDETEKLLDQQSPWLLRLELDRAAMNDKD 1206
Query: 705 AT-----SKVCPQMRGCKIVAHGK--------TMMAIRPPS----TSKLSKTMTMQILKY 577
T ++ + V + +RP + T M +I
Sbjct: 1207 LTMGQVGERIKDTFKNDLFVIWSEDNAEKLIIRCRVVRPKALDAETEAEEDHMLKKIENT 1266
Query: 576 SLANVVVKGIPSVNRCVIHADEKK-----GDF-----YSLLVEGTDFRSVLSSVGVDPRK 427
L N+ ++GI + R V+ ++K G++ + L +G + V++ GVDP +
Sbjct: 1267 MLENITLRGIEGIERVVMMKYDRKVPNETGEYQKVPEWVLETDGVNLSEVMTVPGVDPTR 1326
Query: 426 TNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITR 247
N+ + + +VLGIEA R+ + E+ + + G ++ RH+ LL DVMT +G + +TR
Sbjct: 1327 IYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTR 1386
Query: 246 NGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQK 67
+G + L+ SFE+T++ LFEA ++ D GVSE +I+G +GTG F +M
Sbjct: 1387 HGFNRSSTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVM-- 1444
Query: 66 YDKKAVLK 43
D+++++K
Sbjct: 1445 IDEESLVK 1452
>gi|23484677|gb|EAA19924.1| RNA polymerase A/beta'/A'' subunit,
putative [Plasmodium yoelii yoelii]
Length = 2020
Score = 704 bits (1817), Expect = 0.0
Identities = 411/988 (41%), Positives = 569/988 (56%), Gaps = 60/988 (6%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M K+ ++ ++ + F E + + + V I N ++Y++ + P YG LD +
Sbjct: 19 MRKDFVKDVKNNYEIKSINFGIMGKEDIIRYSEVKILNREMYKNNSNGV-PYPYGVLDLR 77
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
+G +C GHFGY +L+ PVFHIG++K I +L CICK CS ILL
Sbjct: 78 LGAHKSNSICETCKKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKTCSHILLPL 137
Query: 3843 EQHRVFSRQVMNPNLD-YLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLK--I 3673
E+ FS N+D L ++ KRI++ CKK + C +CG G +KK + L +
Sbjct: 138 EKIEFFSNLKKKKNIDDSLFKRQFFKRILSICKKVNKCYNCGSPQGVIKKIIKPSLDQFM 197
Query: 3672 AFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRS 3493
V V E GK + +K LN L+V KLF NI I +L +
Sbjct: 198 KLKHIVKVKENGK---------------QVIKEEDLNSLYVLKLFKNINPFYIKLLNI-- 240
Query: 3492 GEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGA 3313
++P L++T + VPP IRPSV+ + + GT EDD+T L EI N+ + +G
Sbjct: 241 ---ENPEKLIITTLIVPPNTIRPSVIID-EHGTAEDDLTCILSEIAQLNNTINSQSSNGY 296
Query: 3312 PSKTLFETWEHLQIQCALYINSE---MSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCG 3142
+ E LQ+Q +INS+ +S L + R QRLKGK+GRFR NL G
Sbjct: 297 QTNQFLGNIEFLQLQVTRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSG 356
Query: 3141 KRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGA 2962
KRVDFS RTVISPDPN+ ID+V +P +AM LT+PE VN NIEK++ L+ NGS+V PGA
Sbjct: 357 KRVDFSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIEKLKMLIRNGSNVWPGA 416
Query: 2961 NYLVEK----------KTGNKKL------------------------------------- 2923
NY+++K K GN +
Sbjct: 417 NYVIKKNVNMNYDENGKIGNSIIDIVKRYVNKSRELNTSFSKNINNEQNQNSSNNNLGAN 476
Query: 2922 ---LKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRF 2752
LKY + + L++GD +ERH+ D D+VLFNRQPSLH++SIM H+A+VM +TFRF
Sbjct: 477 RISLKYANKKYVIDQLKIGDIVERHICDGDIVLFNRQPSLHRMSIMCHKARVMDYKTFRF 536
Query: 2751 NECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITG 2572
NEC C+PYNADFDGDEMNLH+PQT E++AEA LMNVK+NLITP++GE ++A QDF++
Sbjct: 537 NECVCSPYNADFDGDEMNLHVPQTEESRAEALYLMNVKHNLITPKNGEVIIALTQDFLSA 596
Query: 2571 GYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRP 2392
Y++T+KDTFL R + DA + ELWTGKQLI ++I+P
Sbjct: 597 SYVITNKDTFLDRDLFCLXCSYFSDAKIDIELPVPAILKPK----ELWTGKQLISVLIKP 652
Query: 2391 DKGSDVSLNLTAKNKSYT---GNLELCSKD-SYVIIRNSVLLAGCLDKSLLGSSSKVNIF 2224
+K + +N K + Y+ G+L+ S+D SYV S L+ G L K +LG+S K +F
Sbjct: 653 NKNENTIINFEMKEREYSTKNGDLKYLSRDDSYVCFYKSELICGSLGKKVLGAS-KYGLF 711
Query: 2223 YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC 2044
Y L+ + A+ M R ++++ + SN+G +IGI DV PS L +K L+ NGY K
Sbjct: 712 YYLIHNNSTQIALQIMNRFSKLSSRYFSNKGMTIGIDDVTPSRVLTDKKRDLLLNGYEKV 771
Query: 2043 SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG 1864
++ I E K++ QPGCT EETLE + L +R+ AG+ C + L N PL M G
Sbjct: 772 NKEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLPYLNKPLIMFNSG 831
Query: 1863 SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP 1684
+KG+ INI+QMIACVGQQ +SG R +GF R+LPHF K E++GFV NSFY+GL P
Sbjct: 832 AKGALINIAQMIACVGQQNVSGQRIQNGFINRTLPHFNFHCKGSESRGFVQNSFYTGLNP 891
Query: 1683 TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE 1504
TEFFFHTM GREGLVDTAVKTAETGYMQRRL+K LEDL YD +VRS +I+F++G+
Sbjct: 892 TEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIIQFIYGD 951
Query: 1503 DGLDPAMMEAKDGSVVDFTHVLEHAKNI 1420
D L+P+ +++ + F + H +I
Sbjct: 952 DALNPSYIDSNHTYMDQFDKIYNHIISI 979
Score = 135 bits (341), Expect = 6e-30
Identities = 83/224 (37%), Positives = 124/224 (55%)
Frame = -1
Query: 1182 AYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFH 1003
+Y++ + S + QL FI K + I+ PG AVG+I+A SIGEP TQMTLKTFH
Sbjct: 1441 SYRSMIYDYSFINLKQLYIFIYFNISKYFKYISSPGDAVGSISAQSIGEPGTQMTLKTFH 1500
Query: 1002 FAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEIC 823
FAGVASMN+T GVPRIKEIINA I TPI+ L + + A +K+++EKT++ +IC
Sbjct: 1501 FAGVASMNVTLGVPRIKEIINASSIIQTPILNIPLRIKDNYNFALMMKSKLEKTSIRDIC 1560
Query: 822 DYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTM 643
+YI+E Y ++ +K N I+ L L + +I I +++ KI
Sbjct: 1561 EYIKENYCSKGIYISIKFNEDLIQKLFLNINAYTIRDIILKQTHISKIKINKIYIDVIND 1620
Query: 642 MAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADE 511
+ + ++ LK L +++V G + RC+I +E
Sbjct: 1621 YKLHISIKNDEFIFFQIESLKKGLLDLLVYGDKDIKRCIIKKEE 1664
Score = 129 bits (325), Expect = 5e-28
Identities = 78/195 (40%), Positives = 112/195 (57%), Gaps = 30/195 (15%)
Frame = -1
Query: 513 EKKGDFYSLLVEGTDFRSVLSSVGVDPR---------------KTNFNNALVV------- 400
+KK YS+LVEG +L GVD + + N N L++
Sbjct: 1819 KKKKTQYSILVEGNALNYILGLEGVDFKHIISNHVINVFQVCSRKNTKNILIIQFYLHCY 1878
Query: 399 --------ADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN 244
A VLGIEAAR IINEI ++A+ I +D RH+MLLAD+M + GE+LGI R
Sbjct: 1879 TYLFFHIFAQVLGIEAARVTIINEIKKCIEAYSIDIDIRHIMLLADIMAFTGEILGINRF 1938
Query: 243 GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 64
G+ K + S L+LASFE+T +HLF ++FF D I+ +SE II+G + +GTG+F+L+ Y
Sbjct: 1939 GIQKARQSTLMLASFEETNEHLFVSSFFKNNDEINNISESIIVGKNIPIGTGSFELLYDY 1998
Query: 63 DKKAVLKQNSPIFER 19
K+ ++N + ER
Sbjct: 1999 -KQPNEQRNLTLLER 2012
>gi|50310581|ref|XP_455310.1| unnamed protein product [Kluyveromyces
lactis]
gi|49644446|emb|CAG98018.1| unnamed protein product [Kluyveromyces
lactis NRRL Y-1140]
Length = 1720
Score = 702 bits (1811), Expect = 0.0
Identities = 484/1455 (33%), Positives = 734/1455 (50%), Gaps = 123/1455 (8%)
Frame = -1
Query: 4068 EGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQL 3889
E +++ G DP++G +C GHFG+ +L PVFHIGF ++
Sbjct: 43 ESQMKAKIGGLNDPRLGSIDRNYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKV 102
Query: 3888 LQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNG 3709
+ +C +C +LL + M + K + CK C
Sbjct: 103 CESVCMHCGKLLLDEYNEQ------MRQAIKIKDPKRRFNAVWTLCKAKMVCE------- 149
Query: 3708 TVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNI 3529
S D+ T+F S G ++ L+ + K N
Sbjct: 150 --------------TEVPSPDD----PTVFLSRGGCGHIQPSIRKDGLSLVGTWKKDKNA 191
Query: 3528 KEGDIPVLMVRSGEE-----KH-----------------PNDLLLTRMPVPPVCIRPSV- 3418
+ D P + S EE KH P ++LT +PVPP +RPS+
Sbjct: 192 DDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMILTVLPVPPPPVRPSIS 251
Query: 3417 VSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMS 3238
+E + G EDD+T KL +I+ N ++K + +G+P + E+ LQ A Y++++++
Sbjct: 252 FNESQRG--EDDLTYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHVATYMDNDIA 309
Query: 3237 GLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIH 3061
G P +Q R +++ RLKGK+GR RGNL GKRVDFS RTVIS DPNL +DQVGVP
Sbjct: 310 GQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKS 369
Query: 3060 VAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLR 2881
+A TLT+PE+V NI+++ QLV NG + HPGA Y++ +++G++ L+Y KR + L+
Sbjct: 370 IAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI-RESGDRIDLRYSKRAGDIQ-LQ 427
Query: 2880 MGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEM 2701
G +ERH+ DND VLFNRQPSLHK+S+M+HR KVMP TFR N +PYNADFDGDEM
Sbjct: 428 YGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEM 487
Query: 2700 NLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVY 2521
NLH+PQ+ E +AE S+L V +++P+S +P + +QD + G +T +DTF+ +V
Sbjct: 488 NLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVL 547
Query: 2520 RFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSY 2341
+ D T V LW+GKQ++ + I N +
Sbjct: 548 NMLYWIPDWDGIIPTPAILKP------VPLWSGKQVLSMAIP---------NGIHLQRFD 592
Query: 2340 TGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLAR 2161
G L KD+ ++I + ++ G +DK +GSSS + +++ R+ G + + +
Sbjct: 593 DGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSG-GLIHVVTREKGPEICARLFSNIQK 651
Query: 2160 MAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEE 1981
+ +L + GFSIGIGD E+ +RE + + K KE + L A+ G T
Sbjct: 652 VVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLLTAKHGMTLR 711
Query: 1980 ETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAIS 1801
E+ E ++R L+ RD AG+ NL N M GSKGSFINI+QM ACVGQQ++
Sbjct: 712 ESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVE 771
Query: 1800 GHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKT 1621
G R GF +R+LPHF + +PE+KGFV NS+ GLTP EFFFH MGGREGL+DTAVKT
Sbjct: 772 GKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
Query: 1620 AETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKD-GSVVDFTH 1444
AETGY+QRRLVK LED+ YDGT R+S+G+VI+F++GEDG+D A +E + ++
Sbjct: 832 AETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSIDTIPGSDS 891
Query: 1443 VLEHAKNIQTTKEQ----PIPVDKLDEVL-KAEIQKKFKGKYVHFADKLSEYITQTEIKK 1279
E I E+ P ++ E++ +++Q +Y D + + + +
Sbjct: 892 AFERRYRIDLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDD-RQILRRVFVDG 950
Query: 1278 SKKW----------QNGKAHCGNHET--ADLKTKESCKICKNL---------------EA 1180
W QN + +T DL ++ + L EA
Sbjct: 951 EHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVRGKSDILKEA 1010
Query: 1179 YKTSLLANSCLTKTQLCSFIELCYYKV----------------ARAITEPGTAVGAIAAT 1048
+ ++ CL +++L + + Y++ R+I PG VG +AA
Sbjct: 1011 QQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQ 1070
Query: 1047 SIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPY--DESL 874
SIGEP+TQMTL TFHFAGVAS +T GVPR+KEI+N K + TP +T L Y D+
Sbjct: 1071 SIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPEYAADQEK 1130
Query: 873 ARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRL---LQLEVCMESISY--- 712
A+ +++ IE TTL + E Y PD +++ + + I+L L E +S+ Y
Sbjct: 1131 AKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEETEKSLDYQSP 1190
Query: 711 ----------AIATSKVCPQMRGCKIVAHGKTMM-----------------AIRPPST-- 619
A+ + G KI K + IR P T
Sbjct: 1191 WLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVIRDPKTLD 1250
Query: 618 ---SKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKK-----GDFYS-----LLVE 478
M +I L + ++G+ + R V+ ++K G+++ L +
Sbjct: 1251 ADVEAEEDHMLKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSETGEYHKVPEWVLETD 1310
Query: 477 GTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVM 298
G + V++ GVD + N+ + + +VLGIEA R+ + E+ + + G ++ RH+
Sbjct: 1311 GVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMA 1370
Query: 297 LLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECII 118
LL DVMT +G ++ +TR+G + L+ SFE+T++ LFEA ++ D GVSE +I
Sbjct: 1371 LLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVI 1430
Query: 117 MGTPMTVGTGTFKLM 73
+G +GTG F +M
Sbjct: 1431 LGQMAPIGTGAFDVM 1445
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 701 bits (1809), Expect = 0.0
Identities = 487/1479 (32%), Positives = 753/1479 (49%), Gaps = 116/1479 (7%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
KV V+F + +RQ + + + +++ E K +P G D ++G
Sbjct: 14 KVRVVQFGILSPDEIRQMSVIHVEHSETTE----KGKPKVGGLSDTRLGTIDRKVKCETC 69
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 3805
+C GHFGY +L P++H+GF K + +++C+C NCS IL E R RQ M
Sbjct: 70 MANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKIL-ADEVCRSLFRQAMKI 128
Query: 3804 NLDYLHRKALHKRIVAACKKGSTC----------SHCGLKNGTVKKAVGAVLKIAFASPV 3655
+ K K+I+ ACK + C SH + VKK+ G P
Sbjct: 129 K----NPKNRLKKILDACKNKTKCDGGDDIDDVQSHS--TDEPVKKSRGGC---GAQQPK 179
Query: 3654 SVDELGKFATMFSSNQEVGDHVRKM-----KFTLLNPLFVQKLFSNIKEGDIPVLMVRSG 3490
E K + ++ D ++ + L V + I + D +L
Sbjct: 180 LTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNP- 238
Query: 3489 EEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAP 3310
+ P+ ++L +P+PP +RPSV+ + + +EDD+T +L I+ N+ LK+ +++GAP
Sbjct: 239 KFARPDWMILEVLPIPPPPVRPSVMMDATS-RSEDDLTHQLAMIIRHNENLKRQEKNGAP 297
Query: 3309 SKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRV 3133
+ + E + LQ A Y ++E+ G P Q R +++ RLK K+GR RGNL GKRV
Sbjct: 298 AHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRV 357
Query: 3132 DFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLV-INGSDVHPGANY 2956
DFS RTVI+PDP + ID++GVP +A+ LT+PE V NIE++ +LV I+ S+ Y
Sbjct: 358 DFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLVRLVFISFSET----KY 413
Query: 2955 LVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKV 2776
++ + G + L+Y K+ ++L +G +ERHL D D VLFNRQPSLHK+SIM HR ++
Sbjct: 414 II-RDDGQRSDLRYLKKSS-DQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRI 471
Query: 2775 MPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVA 2596
MP TFR N +PYNADFDGDEMN+H+PQ++E +AE ELM V +++P++ P++
Sbjct: 472 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMG 531
Query: 2595 AIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQ 2416
+QD + G +T +DTF+ + D K LWTGKQ
Sbjct: 532 IVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPR------PLWTGKQ 585
Query: 2415 LIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSK 2236
+ LII ++L + + T + D+ V I LLAG L K LG+S+
Sbjct: 586 VFNLIIP----KQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNG 641
Query: 2235 VNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNG 2056
++ +++ + G DAA + + +L GF+IGIGD + + + + N
Sbjct: 642 -SLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNA 700
Query: 2055 YSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTM 1876
+ I++ + +L +PG T +T E+ + + L+ RD AG ++L++ N M
Sbjct: 701 KTAVKDLIRQFQGKELDPEPGRTMRDTFENRVDQVLNKARDDAGSSAQKSLAETNNLKAM 760
Query: 1875 AVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYS 1696
GSKGSFINISQM ACVGQQ + G R P GF+ R+LPHF + PE++GFV NS+
Sbjct: 761 VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLR 820
Query: 1695 GLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEF 1516
GLTP EFFFH MGGREGL+DTAVKT+ETGY+QRRLVK +ED+ YDGTVR+S+GDVI+F
Sbjct: 821 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 880
Query: 1515 VFGEDGLDPAMMEA-KDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLK-----AEIQ 1354
++GEDG+D +E+ K S+ + + E P DE L+ E++
Sbjct: 881 LYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELR 940
Query: 1353 KKFKGKYVHFADKLSEYITQTEIKKSKKWQ---NGKAHCGNHETA---DL---------- 1222
F +Y + T+ W N K H N + DL
Sbjct: 941 DVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVE 1000
Query: 1221 ------KTKESCKI-----CKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVAR------ 1093
K +E + ++EA K + L + L ++ L S L YK++R
Sbjct: 1001 IVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSRERFEWV 1060
Query: 1092 ----------AITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEII 943
++ PG +G +AA SIGEP+TQMTL TFH+AGV++ N+T GVPR++EII
Sbjct: 1061 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1120
Query: 942 NAVKTISTPIITAALLDPYDESL--ARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKL 769
N K I TP ++ L +S A+ V+ +E TTL + E Y PD +++
Sbjct: 1121 NVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEE 1180
Query: 768 NSKRIR------------------LLQLEVCME-----SISYAIATSKVCPQM------- 679
+ + +R LL++E+ E +S A K+ +
Sbjct: 1181 DFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCI 1240
Query: 678 ----RGCKIVAHGKTMMAIRP----PSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVI 523
K++ + M P S +I L + ++GIP +N+ I
Sbjct: 1241 FNDDNAQKLILRIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFI 1300
Query: 522 ------HADEKKG----DFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAA 373
DE+ G + + L EG + +V+ VDP++T N+ + + +VLGIEA
Sbjct: 1301 KQVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAV 1360
Query: 372 RSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEK 193
R +++E+ + G ++ RH+ +L D MTYRG ++ ITR+G+ + L+ SFE+
Sbjct: 1361 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEE 1420
Query: 192 TMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKL 76
T+D L +AA +++ D + GV+E I++G +GTG +L
Sbjct: 1421 TVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCEL 1459
>gi|7428072|pir||JDMU1 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - Arabidopsis thaliana
Length = 1834
Score = 701 bits (1808), Expect = 0.0
Identities = 487/1479 (32%), Positives = 753/1479 (49%), Gaps = 116/1479 (7%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
KV V+F + +RQ + + + +++ E K +P G D ++G
Sbjct: 14 KVRVVQFGILSPDEIRQMSVIHVEHSETTE----KGKPKVGGLSDTRLGTIDRKVKCETC 69
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 3805
+C GHFGY +L P++H+GF K + +++C+C NCS IL E R RQ M
Sbjct: 70 MANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKIL-ADEVCRSLFRQAMKI 128
Query: 3804 NLDYLHRKALHKRIVAACKKGSTC----------SHCGLKNGTVKKAVGAVLKIAFASPV 3655
+ K K+I+ ACK + C SH + VKK+ G P
Sbjct: 129 K----NPKNRLKKILDACKNKTKCDGGDDIDDVQSHS--TDEPVKKSRGGC---GAQQPK 179
Query: 3654 SVDELGKFATMFSSNQEVGDHVRKM-----KFTLLNPLFVQKLFSNIKEGDIPVLMVRSG 3490
E K + ++ D ++ + L V + I + D +L
Sbjct: 180 LTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNP- 238
Query: 3489 EEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAP 3310
+ P+ ++L +P+PP +RPSV+ + + +EDD+T +L I+ N+ LK+ +++GAP
Sbjct: 239 KFARPDWMILEVLPIPPPPVRPSVMMDATS-RSEDDLTHQLAMIIRHNENLKRQEKNGAP 297
Query: 3309 SKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRV 3133
+ + E + LQ A Y ++E+ G P Q R +++ RLK K+GR RGNL GKRV
Sbjct: 298 AHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRV 357
Query: 3132 DFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLV-INGSDVHPGANY 2956
DFS RTVI+PDP + ID++GVP +A+ LT+PE V NIE++ +LV I+ S+ Y
Sbjct: 358 DFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLVRLVFISFSET----KY 413
Query: 2955 LVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKV 2776
++ + G + L+Y K+ ++L +G +ERHL D D VLFNRQPSLHK+SIM HR ++
Sbjct: 414 II-RDDGQRLDLRYLKKSS-DQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRI 471
Query: 2775 MPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVA 2596
MP TFR N +PYNADFDGDEMN+H+PQ++E +AE ELM V +++P++ P++
Sbjct: 472 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMG 531
Query: 2595 AIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQ 2416
+QD + G +T +DTF+ + D K LWTGKQ
Sbjct: 532 IVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPR------PLWTGKQ 585
Query: 2415 LIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSK 2236
+ LII ++L + + T + D+ V I LLAG L K LG+S+
Sbjct: 586 VFNLIIP----KQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNG 641
Query: 2235 VNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNG 2056
++ +++ + G DAA + + +L GF+IGIGD + + + + N
Sbjct: 642 -SLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNA 700
Query: 2055 YSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTM 1876
+ I++ + +L +PG T +T E+ + + L+ RD AG ++L++ N M
Sbjct: 701 KTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAM 760
Query: 1875 AVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYS 1696
GSKGSFINISQM ACVGQQ + G R P GF+ R+LPHF + PE++GFV NS+
Sbjct: 761 VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLR 820
Query: 1695 GLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEF 1516
GLTP EFFFH MGGREGL+DTAVKT+ETGY+QRRLVK +ED+ YDGTVR+S+GDVI+F
Sbjct: 821 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 880
Query: 1515 VFGEDGLDPAMMEA-KDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLK-----AEIQ 1354
++GEDG+D +E+ K S+ + + E P DE L+ E++
Sbjct: 881 LYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELR 940
Query: 1353 KKFKGKYVHFADKLSEYITQTEIKKSKKWQ---NGKAHCGNHETA---DL---------- 1222
F +Y + T+ W N K H N + DL
Sbjct: 941 DVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVE 1000
Query: 1221 ------KTKESCKI-----CKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVAR------ 1093
K +E + ++EA K + L + L ++ L S L YK++R
Sbjct: 1001 IVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWV 1060
Query: 1092 ----------AITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEII 943
++ PG +G +AA SIGEP+TQMTL TFH+AGV++ N+T GVPR++EII
Sbjct: 1061 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1120
Query: 942 NAVKTISTPIITAALLDPYDESL--ARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKL 769
N K I TP ++ L +S A+ V+ +E TTL + E Y PD +++
Sbjct: 1121 NVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEE 1180
Query: 768 NSKRIR------------------LLQLEVCME-----SISYAIATSKVCPQM------- 679
+ + +R LL++E+ E +S A K+ +
Sbjct: 1181 DFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCI 1240
Query: 678 ----RGCKIVAHGKTMMAIRP----PSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVI 523
K++ + M P S +I L + ++GIP +N+ I
Sbjct: 1241 FNDDNAQKLILRIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFI 1300
Query: 522 ------HADEKKG----DFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAA 373
DE+ G + + L EG + +V+ VDP++T N+ + + +VLGIEA
Sbjct: 1301 KQVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAV 1360
Query: 372 RSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEK 193
R +++E+ + G ++ RH+ +L D MTYRG ++ ITR+G+ + L+ SFE+
Sbjct: 1361 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEE 1420
Query: 192 TMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKL 76
T+D L +AA +++ D + GV+E I++G +GTG +L
Sbjct: 1421 TVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCEL 1459
>gi|7521936|pir||T31435 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - Vairimorpha necatrix
gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II; RPO21
[Vairimorpha necatrix]
Length = 1605
Score = 700 bits (1806), Expect = 0.0
Identities = 478/1501 (31%), Positives = 762/1501 (49%), Gaps = 115/1501 (7%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
++ ++F E +R+++ V I + + E+ P + G +D KMG
Sbjct: 9 RISSIQFGLFSPEEIRKSSVVQIIHPETMENGF----PKSGGLIDLKMGTTERAFLCSSC 64
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 3805
C GHFG+ +L P+FH+G+ ++L+C+C CS + ++ + +
Sbjct: 65 EKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKN--------LKK 116
Query: 3804 NLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFAT 3625
+L+++ + K + + + CG K +KK G
Sbjct: 117 DLNFVWNISKTKSVCEGEIGENGFTGCGNKQPVIKKE------------------GMSLI 158
Query: 3624 MFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPV 3445
F +E D +LN V + I D L K P L+LT + V
Sbjct: 159 AFMKGEEESDGK-----VILNGERVHNILKKIVNEDAVFLGFDQKFTK-PEWLILTVLLV 212
Query: 3444 PPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQC 3265
PP +RPS+V E EDD+T KL +I+ N LKK++ +GAP + + + LQ
Sbjct: 213 PPPSVRPSIVMEGML-RAEDDLTHKLADIVKANTYLKKYELEGAPGHVVRDYEQLLQFHI 271
Query: 3264 ALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLR 3088
A I++++SG P +Q R +++ + RLKGK+GR RGNL GKRVDFS R+VI+PDPN+
Sbjct: 272 ATMIDNDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDPNIS 331
Query: 3087 IDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGK 2908
+++VGVP +A TFPEI+ NI+++ +LV NG + +PGANY++ + G + L + +
Sbjct: 332 VEEVGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYVI-RNDGQRIDLNFNR 390
Query: 2907 RDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPY 2728
D L G +ERH+ D DVVLFNRQPSLHK+S+M+H +VM G+TFR N +PY
Sbjct: 391 GDI---KLEEGYVVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPY 447
Query: 2727 NADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKD 2548
NADFDGDEMNLH+PQ+Y +KAE EL V +++P+S +P++ +QD +T L T +D
Sbjct: 448 NADFDGDEMNLHMPQSYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRD 507
Query: 2547 TFLPRAEVYRFAAAL-------IDASAKKQTKXXXXXX-----------------XXXXP 2440
+F R E + ++ D+S T P
Sbjct: 508 SFFDRRETMQLLYSVNINNYEFTDSSKLIMTHDDSFGNNLHTEESSNIMKILNFPAISYP 567
Query: 2439 VELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCS--KDSYVIIRNSVLLAGCL 2266
+LWTGKQ++ I+ N KS N E +DSYVIIRN +L+G +
Sbjct: 568 KKLWTGKQILSYILP---------NTIYNGKSNEHNEEDLENVEDSYVIIRNGEILSGII 618
Query: 2265 DKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSN-RGFSIGIGDVRPSEQL 2089
DK +G S++ + +++ D+G D +M ++ + FSIGIGD ++
Sbjct: 619 DKKAVG-STQGGLIHIIANDFGPDRVTCFFDDAQKMMNLYFATINAFSIGIGDAIADKET 677
Query: 2088 LREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLR 1909
+ + + ++ + ++ I + ++ KL+ PG + E+ ES + L+ RD +G +
Sbjct: 678 MSQVQRSIETAKEQVNEIIVKAQKNKLERLPGMSMRESFESQVNYILNKPRDISGASASK 737
Query: 1908 NLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPE 1729
+LS N TM + GSKGSFINISQ+ AC+GQQ + G R P GF RSLPHF + + +
Sbjct: 738 SLSFCNNMRTMVLAGSKGSFINISQVTACLGQQNVEGKRIPFGFNYRSLPHFSKADYSGK 797
Query: 1728 AKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGT 1549
++GFV NS+ G+TP EFFFH MGGREGL+D A+KTAETGY+QRRLVK +ED + D +
Sbjct: 798 SRGFVENSYVKGITPEEFFFHAMGGREGLIDIAIKTAETGYIQRRLVKAMEDATVTLDRS 857
Query: 1548 VRSSVGDVIEFVFGEDGLDPAMME----------AKDGSVVDFTHVLEHAKNIQTTKEQP 1399
VR + G + ++ +GEDG D +E KD H+++ ++ ++
Sbjct: 858 VRGADGFIYQYEYGEDGFDATFLEMQKMTHDDVATKDDVSFKNLHLVDMFTDLNFAIKKE 917
Query: 1398 IPVDKLDEVLKAEI--QKKFKGKYVHFADKLSEYITQTEIKKSKKWQN------GKAHCG 1243
D++ ++L ++ QK ++ + + +Y + I +Q K C
Sbjct: 918 NVTDQIYKLLTTDVNLQKILYDEFEWLNENVKKY-EKMNIASPCNFQRIINLAIYKFDCR 976
Query: 1242 NHETA----------------------DLKTKESCKICKNLEAYKTSLLANSCLTKTQLC 1129
+ + ++ K + I + L YK SL A + + K
Sbjct: 977 KGDISPYLILDTLKNLIENLPIKNLLIEILIKYNLSIKRILNEYKLSLEAYNWILKE--- 1033
Query: 1128 SFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKE 949
+K+ ++I P VG +AA S+GEP+TQMTL TFH AGV S NIT GVPR+KE
Sbjct: 1034 -----IKFKILKSIISPNEMVGTLAAQSVGEPATQMTLNTFHLAGV-SANITMGVPRLKE 1087
Query: 948 IINAVKTISTPIITAALLDPYDESL--ARRVKARIEKTTLGEICDYIEEVYLP------- 796
IIN K I TP + L DP++++L A+++++ +E + + +C++ E Y P
Sbjct: 1088 IINVAKNIKTPCMKIYLKDPFNKTLEMAKKIQSELEFSDIKSLCEFSEIYYDPVIEDTSI 1147
Query: 795 -------DDYF--------------LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQM 679
+YF +++L RI+L+ + +E+I ++ + P +
Sbjct: 1148 KEDKDFVQEYFDFPDEHLDFSKMPKFIIRLKIDRIKLVSKNLKLENIVKSL--HEAFPNI 1205
Query: 678 RGCKIVAHGKTMMAIRPPSTSKLSKTMTMQILKY-SLANVVVKGIPSVNRCVIHADEKKG 502
+ IR S L+ + L+Y ++ N+ + G + + I D+ K
Sbjct: 1206 FHIIRSDENSQNLIIRIRCISSLNNNVEYYNLQYKNILNLKIMGYNKIKKVFISEDKDKD 1265
Query: 501 DFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGI 322
++Y L +G R + S V+ N+ + +VLGIEAAR I+NE+ +D +G
Sbjct: 1266 EWY-LQTDGVCIREIFSHPNVEGHLVTSNDLNEIVEVLGIEAARETILNELTLVIDGNGS 1324
Query: 321 GLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVI 142
++ RH+ LLADVMT +G + GITR+G+ K+ ASFE+T+D L +AA +++ V
Sbjct: 1325 YVNHRHISLLADVMTMKGYLTGITRHGVNKVGFGCTKRASFEETVDILLDAALVAEKYVT 1384
Query: 141 HGVSECIIMGTPMTVGTGTFKLM---QKYDKKAVLKQ-------------NSPIFERLNV 10
G +E I+MG +GTG L+ K DK L + +SP+ E L++
Sbjct: 1385 KGYTENIMMGHLAPLGTGIGNLLLDVSKLDKAIPLSKPEYNYEEVDTPFIHSPVSENLSI 1444
Query: 9 T 7
+
Sbjct: 1445 S 1445
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II
complex [Drosophila pseudoobscura]
Length = 1811
Score = 697 bits (1800), Expect = 0.0
Identities = 477/1429 (33%), Positives = 723/1429 (50%), Gaps = 128/1429 (8%)
Frame = -1
Query: 3960 GHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHR-----VFSRQVMNPNLD 3796
GHFG+ DL PVFHIGF TI++L+C+C CS +L++P + V S+ L
Sbjct: 1 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLA 60
Query: 3795 YLHRKALHKRIVAACKKGSTCS-----------------HCGLKNGTVKKAVGAVLKIAF 3667
Y++ K I C+ G CG ++++ G L +
Sbjct: 61 YVYDLCKGKTI---CEGGEDMDLTKDNQQPDPNKKPGHGGCGHYQPSIRRT-GLDLSAEW 116
Query: 3666 ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGE 3487
P + K E+ H+ + +L +
Sbjct: 117 KHPNEDSQEKKIVVSAERVWEILKHITDEECFILG---------------------MDPK 155
Query: 3486 EKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPS 3307
P+ +++T +PVPP+ +RP+VV A +DD+T KL +I+ N+ L+K++ GA +
Sbjct: 156 YARPDWMIVTVLPVPPLAVRPAVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAA 214
Query: 3306 KTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVD 3130
+ E + LQ A ++++M G+P MQ + ++A RLKGK+GR RGNL GKRVD
Sbjct: 215 HVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 274
Query: 3129 FSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLV 2950
FS RTVI+PDPNLRIDQVGVP +A LTFPE+V NI++M++LV G+ +PGA Y+V
Sbjct: 275 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 334
Query: 2949 EKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMP 2770
L + K +L +L+ G +ERHL D+D+V+FNRQP+LHK+S+M HR KV+P
Sbjct: 335 RDNGERIDLRFHPKSSDL--HLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLP 392
Query: 2769 GRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAI 2590
TFR N +PYNADFDGDEMNLH+PQ+ E +AE + +ITP++ +P++ +
Sbjct: 393 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIV 452
Query: 2589 QDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLI 2410
QD +T +T +D F+ R +V L K LWTGKQ+
Sbjct: 453 QDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPR------PLWTGKQIF 506
Query: 2409 ELIIRPDKGSDVSLNLTAKNKSYTGNLELCSK-DSYVIIRNSVLLAGCLDKSLLGSSSKV 2233
LII P + + + T ++ G + S D+ V++ + L+ G L K LG+S+
Sbjct: 507 SLII-PGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAG- 564
Query: 2232 NIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGY 2053
++ ++ + G + A + + +L G SIGIGD Q E +
Sbjct: 565 SLLHICFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAK 624
Query: 2052 SKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMA 1873
I++ +L+ PG T +T E+ + R L+ RD G ++L++YN M
Sbjct: 625 DDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMV 684
Query: 1872 VCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSG 1693
V GSKGS INISQ+IACVGQQ + G R P GF +R+LPHF + PE++GFV NS+ +G
Sbjct: 685 VSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAG 744
Query: 1692 LTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFV 1513
LTP+EF+FH MGGREGL+DTAVKTAETGY+QRRL+K +E + +YDGTVR+SVG +I+
Sbjct: 745 LTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLR 804
Query: 1512 FGEDGLDPAMMEAKDGSVVDFTH-VLEHAKNIQTTKEQPIPVDKLDEVLK-----AEIQK 1351
+GEDGL +++ ++ V ++ E + E+ + DEV+K +E +
Sbjct: 805 YGEDGLCGELVDFQNMPTVKLSNKAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQ 864
Query: 1350 KFKGKYVHF---ADKLSEYITQTEIK-------KSKKWQNGKA-HCGNHETADLKTKESC 1204
+ ++ H D L + + K + W K H DL
Sbjct: 865 DLESEWDHLMQDRDHLRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVI 924
Query: 1203 KICKNL---------------EAYKTSLLANSCLTKTQLCS----------------FIE 1117
K K L +A + + L CL ++ LC+ I
Sbjct: 925 KGVKTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIG 984
Query: 1116 LCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINA 937
+ +A PG VGA+AA S+GEP+TQMTL TFHFAGV+S N+T GVPR+KEIIN
Sbjct: 985 EIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI 1044
Query: 936 VKTISTPIITAALLD--PYDESLARRVKARIEKTTLGEICDYIEEVYLPD---------- 793
K P +T L D A+ V R+E TTL ++ Y PD
Sbjct: 1045 SKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQ 1104
Query: 792 ------------------DYFLLVKLNSKRI--RLLQLEVCMESISYAIATSKVC----- 688
+ L ++L+ KR+ + L +E E I+ C
Sbjct: 1105 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDD 1164
Query: 687 ---PQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYS-LANVVVKGIPSVNRCVIH 520
+ +I+ + + + K+ M ++ ++ + L+++ ++GI ++ + +H
Sbjct: 1165 NADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH 1224
Query: 519 ---ADEKK-------GDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLG 385
D KK G+F + L +GT VLS VDP +T+ N+ + VLG
Sbjct: 1225 LPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLG 1284
Query: 384 IEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLA 205
IEA R + E+ A + +G+ ++ RH+ LL DVMT +G ++ ITR+G+ + L+
Sbjct: 1285 IEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1344
Query: 204 SFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKYDK 58
SFE+T+D L +AA ++ D + GVSE IIMG +GTG F L+ +K
Sbjct: 1345 SFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1393
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis
thaliana]
Length = 1860
Score = 692 bits (1785), Expect = 0.0
Identities = 485/1509 (32%), Positives = 752/1509 (49%), Gaps = 146/1509 (9%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
KV V+F + +RQ + + + +++ E K +P G D ++G
Sbjct: 14 KVRVVQFGILSPDEIRQMSVIHVEHSETTE----KGKPKVGGLSDTRLGTIDRKVKCETC 69
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 3805
+C GHFGY +L P++H+GF K + +++C+C NCS IL + ++ NP
Sbjct: 70 MANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADE------AMKIKNP 123
Query: 3804 NLDYLHRKALHKRIVAACKKGSTC----------SHCGLKNGTVKKAVGAVLKIAFASPV 3655
K K+I+ ACK + C SH + VKK+ G P
Sbjct: 124 -------KNRLKKILDACKNKTKCDGGDDIDDVQSHS--TDEPVKKSRGGC---GAQQPK 171
Query: 3654 SVDELGKFATMFSSNQEVGDHVRKM-----KFTLLNPLFVQKLFSNIKEGDIPVLMVRSG 3490
E K + +++E D ++ + L V + I + D +L
Sbjct: 172 LTIEGMKMIAEYKNSKEENDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNP- 230
Query: 3489 EEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAP 3310
+ P+ ++L +P+PP +RPSV+ + + +EDD+T +L I+ N+ LK+ +++GAP
Sbjct: 231 KFARPDWMILEVLPIPPPPVRPSVMMDATS-RSEDDLTHQLAMIIRHNENLKRQEKNGAP 289
Query: 3309 SKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRV 3133
+ + LQ A Y ++E+ G P Q R +++ RLK K+GR RGNL GKRV
Sbjct: 290 RHIISRFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRV 349
Query: 3132 DFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG---A 2962
DFS RTVI+PDP + ID++GVP +A+ LT+PE V NIE++++LV G PG A
Sbjct: 350 DFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGA 409
Query: 2961 NYLVEKKTGNKKLLKYGKRDELAKNLRMG----------------------------DTI 2866
Y++ + G + L+Y K+ ++L +G +
Sbjct: 410 KYII-RDDGQRLDLRYLKKSS-DQHLELGYRYVLLSYSIHSTHKRLFLEVVIFMLSWSQV 467
Query: 2865 ERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLP 2686
ERHL D D VLFNRQPSLHK+SIM HR ++MP TFR N +PYNADFDGDEMN+H+P
Sbjct: 468 ERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 527
Query: 2685 QTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAA 2506
Q++E +AE ELM V +++P++ P++ +QD + G +T +DTF+ +
Sbjct: 528 QSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMW 587
Query: 2505 LIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLE 2326
D K LWTGKQ+ LII ++L + + T
Sbjct: 588 WEDFDGKVPAPAILKPR------PLWTGKQVFNLIIP----KQINLLRYSAWHADTETGF 637
Query: 2325 LCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVF 2146
+ D+ V I LLAG L K LG+S+ ++ +++ + G DAA + + +
Sbjct: 638 ITPGDTQVRIERGELLAGTLCKKTLGTSNG-SLVHVIWEEVGPDAARKFLGHTQWLVNYW 696
Query: 2145 LSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLES 1966
L GF+IGIGD + + + + N + I++ + +L +PG T +T E+
Sbjct: 697 LLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFEN 756
Query: 1965 IILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPP 1786
+ + L+ RD AG ++L++ N M GSKGSFINISQM ACVGQQ + G R P
Sbjct: 757 RVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 816
Query: 1785 DGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGY 1606
GF+ R+LPHF + PE++GFV NS+ GLTP EFFFH MGGREGL+DTAVKT+ETGY
Sbjct: 817 FGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 876
Query: 1605 MQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEA-KDGSVVDFTHVLEHA 1429
+QRRLVK +ED+ YDGTVR+S+GDVI+F++GEDG+D +E+ K S+ +
Sbjct: 877 IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRT 936
Query: 1428 KNIQTTKEQPIPVDKLDEVLK-----AEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQ 1264
+ E P DE L+ E++ F +Y + T+ W
Sbjct: 937 FKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWP 996
Query: 1263 ---NGKAHCGNHETA---DL----------------KTKESCKI-----CKNLEAYKTSL 1165
N K H N + DL K +E + ++EA K +
Sbjct: 997 LPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNAT 1056
Query: 1164 LANSCLTKTQLCSFIELCYYKVAR----------------AITEPGTAVGAIAATSIGEP 1033
L + L ++ L S L YK++R ++ PG +G + A SIGEP
Sbjct: 1057 LFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVPAQSIGEP 1116
Query: 1032 STQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESL--ARRVK 859
+TQMTL TFH+AGV++ N+T GVPR++EIIN K I TP ++ L +S A+ V+
Sbjct: 1117 ATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKTVQ 1176
Query: 858 ARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIR------------------LLQLEV 733
+E TTL + E Y PD +++ + + +R LL++E+
Sbjct: 1177 CALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIEL 1236
Query: 732 CME-----SISYAIATSKVCPQM-----------RGCKIVAHGKTMMAIRP----PSTSK 613
E +S A K+ + K++ + M P S
Sbjct: 1237 NREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDESA 1296
Query: 612 LSKTMTMQILKYSLANVVVKGIPSVNRCVI------HADEKKG----DFYSLLVEGTDFR 463
+I L + ++GIP +N+ I DE+ G + + L EG +
Sbjct: 1297 EDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFKTSEEWMLDTEGVNLL 1356
Query: 462 SVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADV 283
+V+ VDP++T N+ + + +VLGIEA R +++E+ + G ++ RH+ +L D
Sbjct: 1357 AVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1416
Query: 282 MTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPM 103
MTYRG ++ ITR+G+ + L+ SFE+T+D L +AA +++ D + GV+E I++G
Sbjct: 1417 MTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLA 1476
Query: 102 TVGTGTFKL 76
+GTG +L
Sbjct: 1477 PIGTGDCEL 1485
>gi|162223|gb|AAA30233.1| RNA polymerase III
Length = 1530
Score = 689 bits (1779), Expect = 0.0
Identities = 384/879 (43%), Positives = 544/879 (61%), Gaps = 18/879 (2%)
Frame = -1
Query: 4044 YGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNC 3865
YG D ++GV +CVGH G+ DL+ PVFH+GFF +++ + ICK C
Sbjct: 58 YGVNDARLGVCDRLSICETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRC 117
Query: 3864 SSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKA--V 3691
S +LL + + R++ + +L+ L R L K I K C CG NG V++ +
Sbjct: 118 SHVLLDDTEIDYYKRRLSSSSLEPLQRTMLIKTIQTDAYKTRVCLKCGGLNGVVRRVRPM 177
Query: 3690 GAVLKIAFASPVSVDEL---------GKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLF 3538
V + P + + T + N+ VG+ R+ L+P+ V++LF
Sbjct: 178 RLVHEKYHVEPRRGEGPRENPGGFFDAELRTACAYNKVVGE-CREFVHDFLDPVRVRQLF 236
Query: 3537 SNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTT---EDDVTMKL 3367
+ G++ +L + G P DLL+T + VPPV +RP AGTT +DD+T +
Sbjct: 237 LAVPPGEVILLGLAPGVS--PTDLLMTTLLVPPVPVRPRGC----AGTTTVRDDDLTAQY 290
Query: 3366 MEIMLTNDVLKKHKRDGAPSKTLF-ETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFT 3190
+I+++ D ++ DG+ T + ETWE LQ++ A ++S + G PP+++ ++++
Sbjct: 291 NDILVSTDTMQ----DGSLDATRYTETWEMLQMRAARLLDSSLPGFPPNVRTSD-LKSYA 345
Query: 3189 QRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIE 3010
QRLK K GRFR NL GKRVD+SGR+VISPDPNL +D++ VP+HVA LT+P+ V +N E
Sbjct: 346 QRLKSKHGRFRCNLSGKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHE 405
Query: 3009 KMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGK-RDELAKNLRMGDTIERHLDDNDVVL 2833
MR+LV NG VHPGA + + G+KK LK + R LA L +GD +ERH+ + D+VL
Sbjct: 406 LMRRLVRNGPHVHPGATTVYLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVL 465
Query: 2832 FNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASE 2653
FNRQPSLH++S+M+HRA+V+P RTFRFNEC C PYNADFDGDEMN+H QT +A+AEA +
Sbjct: 466 FNRQPSLHRVSMMAHRARVLPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQ 525
Query: 2652 LMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTK 2473
LM+ N+I+ ++GEP++A QDF+ YL+T +D F R E + + + T+
Sbjct: 526 LMSTARNIISAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPV----TQ 581
Query: 2472 XXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLEL-CSKDSYVII 2296
PVELWTGKQL ELI+RP DV L+ A K YT + C+++ YV
Sbjct: 582 FRLPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRKGKHDCAEEGYVAF 641
Query: 2295 RNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGI 2116
+S ++G LDK LLG +K +F L G M R+A+ +L+N GFS+G+
Sbjct: 642 LDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGL 701
Query: 2115 GDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIR 1936
GDV P+ +L ++K ++ C IK + G++ PG T +++LE+ + ELS +R
Sbjct: 702 GDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVR 761
Query: 1935 DHAGQVCLRNLSKYN-APLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLP 1759
D G ++ LS +N PL M GSKGS +NI+QM+ACVGQQ +SG R D F++RSLP
Sbjct: 762 DECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLP 821
Query: 1758 HFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCL 1579
HF R ++ P A+GFVANSFYSGL+PTEFFFHTM GREGLVDTAVKTAETGY+ RRL+K +
Sbjct: 822 HFHRFEEAPAARGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAM 881
Query: 1578 EDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGS 1462
E+L YDGTVR++ GDVI+ FGEDGLDP +ME G+
Sbjct: 882 ENLSVRYDGTVRNTKGDVIQLRFGEDGLDPQLMEGNSGT 920
Score = 243 bits (619), Expect = 4e-62
Identities = 159/387 (41%), Positives = 221/387 (57%), Gaps = 13/387 (3%)
Frame = -1
Query: 1194 KNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTL 1015
++LE +T LL LT+ + FI C K R EPGT GAIAA S+GEPSTQMTL
Sbjct: 1106 RDLEMLQTELLP---LTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTL 1162
Query: 1014 KTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDES--------LARRVK 859
+TFHFAGVASM+ITQGVPR+ E+INA + I+TP++TA +L E AR VK
Sbjct: 1163 RTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHCEIFRKRARFVK 1222
Query: 858 ARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIA-----TSK 694
A+IE+ L E+ I EV +++L V LN I L L + ++ I T
Sbjct: 1223 AQIERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQRILAAAGHTMS 1282
Query: 693 VCPQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHAD 514
+ I +A+ P +++ + L VVV GI +NR +I ++
Sbjct: 1283 PLRMLNEDCIEVFSLDTLAVYPHFQDARWVHFSLRRILGLLPEVVVGGIGGINRAMISSN 1342
Query: 513 EKKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMD 334
+ +L EG + R+V++ GVD + N+ VV VLGIEAAR I++EI +
Sbjct: 1343 GTE-----VLAEGAELRAVMNLWGVDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILK 1397
Query: 333 AHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQ 154
A+ + +D RHV LLAD+MT RG VLGITR G+ KM +VL +ASFE+T DHL+ AA +
Sbjct: 1398 AYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQR 1457
Query: 153 RDVIHGVSECIIMGTPMTVGTGTFKLM 73
D VS+ II+G P+ +GT +F L+
Sbjct: 1458 VDRDLSVSDSIIVGKPVPLGTTSFDLL 1484
>gi|133355|sp|P08968|RPC1_TRYBB DNA-DIRECTED RNA POLYMERASE III
LARGEST SUBUNIT
gi|84048|pir||S01393 DNA-directed RNA polymerase (EC 2.7.7.6) III
170K chain - Trypanosoma brucei brucei
gi|10524|emb|CAA31014.1| unnamed protein product [Trypanosoma brucei]
Length = 1530
Score = 689 bits (1779), Expect = 0.0
Identities = 384/879 (43%), Positives = 544/879 (61%), Gaps = 18/879 (2%)
Frame = -1
Query: 4044 YGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNC 3865
YG D ++GV +CVGH G+ DL+ PVFH+GFF +++ + ICK C
Sbjct: 58 YGVNDARLGVCDRLSICETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRC 117
Query: 3864 SSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKA--V 3691
S +LL + + R++ + +L+ L R L K I K C CG NG V++ +
Sbjct: 118 SHVLLDDTEIDYYKRRLSSSSLEPLQRTMLIKTIQTDAYKTRVCLKCGGLNGVVRRVRPM 177
Query: 3690 GAVLKIAFASPVSVDEL---------GKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLF 3538
V + P + + T + N+ VG+ R+ L+P+ V++LF
Sbjct: 178 RLVHEKYHVEPRRGEGPRENPGGFFDAELRTACAYNKVVGE-CREFVHDFLDPVRVRQLF 236
Query: 3537 SNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTT---EDDVTMKL 3367
+ G++ +L + G P DLL+T + VPPV +RP AGTT +DD+T +
Sbjct: 237 LAVPPGEVILLGLAPGVS--PTDLLMTTLLVPPVPVRPRGC----AGTTTVRDDDLTAQY 290
Query: 3366 MEIMLTNDVLKKHKRDGAPSKTLF-ETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFT 3190
+I+++ D ++ DG+ T + ETWE LQ++ A ++S + G PP+++ ++++
Sbjct: 291 NDILVSTDTMQ----DGSLDATRYTETWEMLQMRAARLLDSSLPGFPPNVRTSD-LKSYA 345
Query: 3189 QRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIE 3010
QRLK K GRFR NL GKRVD+SGR+VISPDPNL +D++ VP+HVA LT+P+ V +N E
Sbjct: 346 QRLKSKHGRFRCNLSGKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHE 405
Query: 3009 KMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGK-RDELAKNLRMGDTIERHLDDNDVVL 2833
MR+LV NG VHPGA + + G+KK LK + R LA L +GD +ERH+ + D+VL
Sbjct: 406 LMRRLVRNGPHVHPGATTVYLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVL 465
Query: 2832 FNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASE 2653
FNRQPSLH++S+M+HRA+V+P RTFRFNEC C PYNADFDGDEMN+H QT +A+AEA +
Sbjct: 466 FNRQPSLHRVSMMAHRARVLPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQ 525
Query: 2652 LMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTK 2473
LM+ N+I+ ++GEP++A QDF+ YL+T +D F R E + + + T+
Sbjct: 526 LMSTARNIISAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPV----TQ 581
Query: 2472 XXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLEL-CSKDSYVII 2296
PVELWTGKQL ELI+RP DV L+ A K YT + C+++ YV
Sbjct: 582 FRLPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRKGKHDCAEEGYVAF 641
Query: 2295 RNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGI 2116
+S ++G LDK LLG +K +F L G M R+A+ +L+N GFS+G+
Sbjct: 642 LDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGL 701
Query: 2115 GDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIR 1936
GDV P+ +L ++K ++ C IK + G++ PG T +++LE+ + ELS +R
Sbjct: 702 GDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVR 761
Query: 1935 DHAGQVCLRNLSKYN-APLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLP 1759
D G ++ LS +N PL M GSKGS +NI+QM+ACVGQQ +SG R D F++RSLP
Sbjct: 762 DECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLP 821
Query: 1758 HFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCL 1579
HF R ++ P A+GFVANSFYSGL+PTEFFFHTM GREGLVDTAVKTAETGY+ RRL+K +
Sbjct: 822 HFHRFEEAPAARGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAM 881
Query: 1578 EDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGS 1462
E+L YDGTVR++ GDVI+ FGEDGLDP +ME G+
Sbjct: 882 ENLSVRYDGTVRNTKGDVIQLRFGEDGLDPQLMEGNSGT 920
Score = 243 bits (620), Expect = 3e-62
Identities = 159/387 (41%), Positives = 222/387 (57%), Gaps = 13/387 (3%)
Frame = -1
Query: 1194 KNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTL 1015
++LE +T LL LT+ + FI C K R EPGT GAIAA S+GEPSTQMTL
Sbjct: 1106 RDLEMLQTELLP---LTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTL 1162
Query: 1014 KTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDES--------LARRVK 859
+TFHFAGVASM+ITQGVPR+ E+INA + I+TP++TA +L E AR VK
Sbjct: 1163 RTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHCEIFRKRARFVK 1222
Query: 858 ARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIA-----TSK 694
A+IE+ L E+ I EV +++L V LN I L L + ++ I T
Sbjct: 1223 AQIERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQRILAAAGHTMS 1282
Query: 693 VCPQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHAD 514
+ I +A+ P +++ + L +VVV GI +NR +I ++
Sbjct: 1283 PLRMLNEDCIEVFSLDTLAVYPHFQDARWVHFSLRRILGLLPDVVVGGIGGINRAMISSN 1342
Query: 513 EKKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMD 334
+ +L EG + R+V++ GVD + N+ VV VLGIEAAR I++EI +
Sbjct: 1343 GTE-----VLAEGAELRAVMNLWGVDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILK 1397
Query: 333 AHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQ 154
A+ + +D RHV LLAD+MT RG VLGITR G+ KM +VL +ASFE+T DHL+ AA +
Sbjct: 1398 AYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQR 1457
Query: 153 RDVIHGVSECIIMGTPMTVGTGTFKLM 73
D VS+ II+G P+ +GT +F L+
Sbjct: 1458 VDRDLSVSDSIIVGKPVPLGTTSFDLL 1484
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II
[Encephalitozoon cuniculi]
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II
[Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 686 bits (1769), Expect = 0.0
Identities = 477/1447 (32%), Positives = 748/1447 (50%), Gaps = 95/1447 (6%)
Frame = -1
Query: 4077 EDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLT 3898
E +EG + P G +D +MG C GHFG+ +L P+FH+G+
Sbjct: 35 EVMEGGV-PKTGGLIDLRMGTTDRMYLCQSCGGDNFSCPGHFGHIELTKPMFHVGYISKI 93
Query: 3897 IQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGL 3718
++L+C+C CS I + R+ + L + + + + + S CG
Sbjct: 94 KKVLECVCFYCSKIKIP--------RKGIKSTLSNVWGMSKGRSVCEGEVLDNGRSGCGN 145
Query: 3717 KNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLF 3538
K +K+ + +AF +E GK +LN V +F
Sbjct: 146 KQPVIKRE--GLTLVAFMKGEESNE-GK--------------------VMLNGERVYSIF 182
Query: 3537 SNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEI 3358
I + D V M + P ++LT + VPP +RPS+V E EDD+T KL +I
Sbjct: 183 KKISDED-SVYMGFDLKYSRPEWMILTVLLVPPPAVRPSIVMEGSL-RGEDDLTHKLADI 240
Query: 3357 MLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRL 3181
+ +N LKK++++GAP + + + LQ A +I++++ GLP +Q R +++ + RL
Sbjct: 241 IKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATFIDNDIGGLPQALQKSGRPLKSLSARL 300
Query: 3180 KGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMR 3001
KGK+GR RGNL GKRVDFS RTVI+PDPN+ +++VGVP+ +A TFPE V + NI+++
Sbjct: 301 KGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLE 360
Query: 3000 QLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQ 2821
+LV G + HPGANY++ + G K L + + D L G +ERH+ DVVLFNRQ
Sbjct: 361 KLVRAGPNEHPGANYVL-RSDGQKIDLNFNRSDI---RLEEGYVVERHMQSGDVVLFNRQ 416
Query: 2820 PSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNV 2641
PSLHK+S+M+H A+VM +TFR N +PYNADFDGDEMNLH+PQ+Y +KAE EL V
Sbjct: 417 PSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALV 476
Query: 2640 KNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAAL------------ID 2497
+I+P+S +P++ +QD +TG L T +DTFL EV A+ +
Sbjct: 477 SRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYAVNLEFCDIPLGDAVQ 536
Query: 2496 ASAKK----QTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL 2329
+K P+ LWTGKQ++ ++ +LN + + +
Sbjct: 537 TGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVL-------PNLNYIGLSSEHDDDD 589
Query: 2328 ELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPV 2149
+ D+ VII++ + +G +DK G +++ + +++ D+G A + RM
Sbjct: 590 KENIGDTRVIIQDGYIHSGVIDKKAAG-ATQGGLVHIIFNDFGPKRAAQFFDGVQRMINA 648
Query: 2148 FLSN-RGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETL 1972
F++ FS+GIGD + ++ + + S I+ + +L+ PG T +E+
Sbjct: 649 FMTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEEVSALIENARQNRLERLPGMTMKESF 708
Query: 1971 ESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHR 1792
ES + L+ RD +G R+LS+ N TM + GSKGSFINISQ+ ACVGQQ + G R
Sbjct: 709 ESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKR 768
Query: 1791 PPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAET 1612
P GF R+LPHF + T +++GFV NS+ +GL P EFFFH MGGREGL+DTA+KTAET
Sbjct: 769 IPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAET 828
Query: 1611 GYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEH 1432
GY+QRRLVK LED D +VRS G V + +GEDG D +E++ V +FT +
Sbjct: 829 GYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYGEDGFDATFLESQKVDVKNFTK--RY 886
Query: 1431 AKNIQTTKEQPIPVDKLDEVL------KAEIQKKFKGKYVHFADKLSE-----YITQTEI 1285
++ T+E I ++ E + ++QK +Y ++ E + + +I
Sbjct: 887 YIDMFGTEELEIKHGQVSEEVYGMLSSDVDLQKLLDQEYEWLVGEIFEGPPILSVGEVDI 946
Query: 1284 KKSKK----WQNGKAHCGNHETADLKTKESCKICKN-------LEAYKTSLLAN---SCL 1147
++ K +Q+ N K + + LEA+K +N + L
Sbjct: 947 ERDYKVRDIYQSAVMSPCNFTRILATAKRTFHLSTGDVSPYYILEAHKHLTTSNRILNVL 1006
Query: 1146 TKTQLCS----------------FIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTL 1015
+T L +E+ K+ +A P VG +AA S+GEP+TQMTL
Sbjct: 1007 IRTNLSVKRVLLEHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTL 1066
Query: 1014 KTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESL--ARRVKARIEKT 841
TFH AGVAS +T GVPR+KEI N K + TP + L + +S+ A+ ++ IE
Sbjct: 1067 NTFHLAGVAS-TVTMGVPRLKEIFNVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECL 1125
Query: 840 TLGEICDYIEEVYLP--------DD------YF--------------LLVKLNSKRIRLL 745
T+ ++C + E Y P DD YF L++L R +L+
Sbjct: 1126 TVKDLCLFSEIYYDPEITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVVDRAKLV 1185
Query: 744 QLEVCMESISYAIATSKVCPQMRGCKIVAHGKTM--MAIRPPSTSKLSKTMTMQILKY-S 574
+ +E ++ I G ++ + M +R +T +++ S
Sbjct: 1186 GRGINLEYVAMFIRKE----LGGGAHVICSDENAVNMVVRVRTTKSEDESLNFYTTALNS 1241
Query: 573 LANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVAD 394
L + + G +V + I D+ + ++Y L +G +L + V+ R T N+ + +A+
Sbjct: 1242 LLRLQLGGYKNVKKVYISEDKDRKEWY-LQTDGICLSQILGNPAVNSRLTISNDLVEIAE 1300
Query: 393 VLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVL 214
LGIEAAR I+ E+ +D +G ++ RH+ LLADVMT RG + GITR+G+ K+ L
Sbjct: 1301 TLGIEAARESILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGAL 1360
Query: 213 LLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKL---MQKYDKKAVLK 43
+SFE+T++ L +AA S++++ G++E I+MG +GTG ++ M+K DK L
Sbjct: 1361 KRSSFEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKAIPL- 1419
Query: 42 QNSPIFE 22
++P+F+
Sbjct: 1420 -SNPVFK 1425
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit
[Aspergillus oryzae]
Length = 1748
Score = 673 bits (1737), Expect = 0.0
Identities = 480/1464 (32%), Positives = 720/1464 (48%), Gaps = 133/1464 (9%)
Frame = -1
Query: 4068 EGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQL 3889
E + +P G DP++G +C GHFG+ +L PVFHIGF +L
Sbjct: 45 EQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKL 104
Query: 3888 LQCICKNCSSILL-TPEQHRVFSRQVMNPNLDYLHRKALHKRIVAA------------CK 3748
L+ +C NC I T + + + ++ +P + H L K I K
Sbjct: 105 LETVCHNCGKIKANTSDSKFLEALRMRDPKRRFDHIWRLSKDITICEADPPPDEDEPYAK 164
Query: 3747 KGS--TCSH--CGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKM 3580
+ S T H CG T++K ++ S +DE+ +++
Sbjct: 165 ESSKPTRMHGGCGNAQPTIRKEGITLVGTWKPSKSMMDEM---------------DMQQP 209
Query: 3579 KFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVV--SEV 3406
+ + P +F NI D+ + M S + P ++LT +PVPP +RPSV+
Sbjct: 210 EKKTITPQMALNIFRNISHEDVRI-MGLSNDYARPEWMVLTVLPVPPPPVRPSVLVGGST 268
Query: 3405 KAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPP 3226
EDD+T KL EI+ N +++ +++GAP + E LQ A Y++++++G P
Sbjct: 269 SGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVVREFESLLQYHVATYMDNDIAGQPK 328
Query: 3225 DMQ-PKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMT 3049
MQ R ++A RLKGK+GR R NL GKRVDFS RTVI+ DPNL +D+VGVP +A T
Sbjct: 329 AMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIART 388
Query: 3048 LTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDT 2869
LT+PE+V NI+K++QLV NG + HPGA Y+V + G + L++ KR + L G
Sbjct: 389 LTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIV-RDNGERIDLRHAKRAG-GQQLLYGWK 446
Query: 2868 IERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHL 2689
+ERH+ D DV+LFNRQPSLHK S+M HR +VMP TFR N TPYNADFDGDEMNLH+
Sbjct: 447 VERHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 506
Query: 2688 PQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAA 2509
PQ+ E++AE +L V N+++P+ PL+ +QD + G Y + +DTFL + +V
Sbjct: 507 PQSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNLMM 566
Query: 2508 ALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL 2329
+ D WTGKQ+I + + S ++L K+ S
Sbjct: 567 WVPDWDGVIPPPAILKPR------PRWTGKQIISMAL----PSGLNLLRVDKDNSALSEK 616
Query: 2328 ELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPV 2149
D ++I L+ G K +G+S + + + +YG AV +
Sbjct: 617 FAPLNDGGLLIHGGQLMYGMFSKKTVGASGG-GVIHTIFNEYGPGTAVAFFNGAQAIVNY 675
Query: 2148 FLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLE 1969
+L + GFSIGIGD P ++ V + + L+ PG ET E
Sbjct: 676 WLLHNGFSIGIGDTIPDAVTIQRIENCVRERKKEVETITASATDNTLEPLPGMNVRETFE 735
Query: 1968 SIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRP 1789
S + R L+ RD AG ++L N + MA GSKGS INISQM A VGQQ++ G R
Sbjct: 736 SKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRI 795
Query: 1788 PDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETG 1609
P GF+ R+LPHF + +PE++GFV NS+ GLTPTEFFFH M GREGL+DTAVKTAETG
Sbjct: 796 PFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 855
Query: 1608 YMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFT------ 1447
Y+QR+LVK LE++ YDGTVR+S+GD+I+F++GEDGLD A +E + ++ +
Sbjct: 856 YIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQRVDIIKCSDDQFRD 915
Query: 1446 ---------------HVLEHAKNIQTTKE-QPIPVDKLDEVLKAEIQKKFKGKYVHFADK 1315
VLE A I E Q ++ +++LKA ++ K
Sbjct: 916 RFRIDLMDPERSLGPEVLEQANEIAGDVEVQRYLDEEWEQLLKAR-------AFLRTVAK 968
Query: 1314 LSEYITQTEIKKSKKWQNGKAHCGNHE--TADLKTKESCKICKNL--------------- 1186
E + Q I + + + E +DL E + L
Sbjct: 969 EDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVIPQVQALLDRLLIVRGDDPISQ 1028
Query: 1185 EAYKTSLLANSCLTKTQLC--------SFIELCYYKVARAITEPGTAVGAIAATSIG--- 1039
EA + + L +++L S +L + V AI A A +G
Sbjct: 1029 EAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKANAPAGEMVGVLA 1088
Query: 1038 -----EPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDP---YD 883
EP+TQMTL TFHFAGV+S N+T GVPR+KEI+N I TP +T +P +D
Sbjct: 1089 AQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMT-VYQEPGRTHD 1147
Query: 882 ESLARRVKARIEKTTLGEICDYIEEVYLPD--------------DYFL------------ 781
+ A+++++ +E T+L + + E Y PD YF+
Sbjct: 1148 KEGAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIENDRDMVESYFIIPEDVTDDSSRQ 1207
Query: 780 ---LVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIR------- 631
L+++ R +LL + ++ ++ I + P+ + IR
Sbjct: 1208 SKWLLRIILSRPKLLDKGLTVQDVATRI--KQAYPKDIAVIFSDNNADEQVIRIRQIQDH 1265
Query: 630 --PPSTSKLSKTMTMQIL-KYSLANVVVKGIPSVNRCVIHADEK-----KGDFYSLLVE- 478
+ +T++ L ++ L + ++G+ V R I+ K G ++ V+
Sbjct: 1266 KEDEDDDDIEYDVTLKKLEQHLLDTLTLRGVNGVERAFINEKSKVRVLEDGSLFTSKVDP 1325
Query: 477 ----------GTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAH 328
G+ VL+ GVD +T N + V +V GIEAAR+ ++ E+ +
Sbjct: 1326 LCKEWVLETSGSALGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFD 1385
Query: 327 GIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRD 148
G ++ RH+ LL DVMT RG + +TR+G+ + + L+ SFE+T++ L EAA F + D
Sbjct: 1386 GSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELD 1445
Query: 147 VIHGVSECIIMGTPMTVGTGTFKL 76
GVSE +I+G GTG F +
Sbjct: 1446 DCRGVSENLILGQMAPAGTGEFDI 1469
>gi|49074728|ref|XP_401478.1| hypothetical protein UM03863.1 [Ustilago
maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago
maydis 521]
Length = 1774
Score = 669 bits (1726), Expect = 0.0
Identities = 472/1453 (32%), Positives = 724/1453 (49%), Gaps = 119/1453 (8%)
Frame = -1
Query: 4077 EDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLT 3898
+D GK P G DP++G +C GHFG+ DL PVFHIG+
Sbjct: 46 KDEAGK--PRIGGLSDPRLGTLDRNYKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKV 103
Query: 3897 IQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSH--- 3727
++L+C+C +C + VF + V +K +R+ C K C
Sbjct: 104 KKILECVCFHCGKLKADTVTDPVFDQIVKATRGS---KKRRFQRVWEYCSKKMICEADDP 160
Query: 3726 ------------------CGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEV 3601
CG +++ G L + DE G+ + + +
Sbjct: 161 KDEDEMGFDEQNKPGHGGCGRVQPNIRRE-GLKLFTQWKKGKGEDEDGEENAIAQAEKRP 219
Query: 3600 GDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPS 3421
L + + DI VL + S E P+ ++LT +PVPP +RPS
Sbjct: 220 -----------LPASEAHTILKKMSSHDIAVLGL-SEENARPDWMVLTVLPVPPPPVRPS 267
Query: 3420 VVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEM 3241
V EDD+T KL +++ N LKK +++G P+ L + + LQ CA ++++++
Sbjct: 268 VQDG-----GEDDLTYKLADVIRANATLKKMEQEGTPAHILADFEQLLQFHCATFMDNDI 322
Query: 3240 SGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPI 3064
+G P MQ R +++ RLKGK+GR RGNL GKRV+FS RTVI+ DP L +D+VGVP
Sbjct: 323 AGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVNFSARTVITGDPLLELDEVGVPK 382
Query: 3063 HVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNL 2884
+A LT+PE V N + +LV NG + +PGA Y++ + TG + LKY +R ++A L
Sbjct: 383 SIARNLTYPERVTPYNRAWLSELVRNGPNDYPGAKYVI-RDTGERIDLKYNRRSDMA--L 439
Query: 2883 RMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDE 2704
+ G +ERHL D D +LFNRQPSLHK+S+MSHR K+M TFR N PYNADFDGDE
Sbjct: 440 QPGWIVERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDE 499
Query: 2703 MNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEV 2524
MNLH+PQ+ E +AE S++ V +++P++ +P++ +QD + G + +D L +V
Sbjct: 500 MNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLDYQQV 559
Query: 2523 YRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKS 2344
+ + D W+GKQ++ + I KG +V L+ K+K
Sbjct: 560 QQVLLWVADWDGVVPMPCILKPK------PYWSGKQILSMCI--PKGINVFLD---KDKG 608
Query: 2343 YTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLA 2164
N KD V I N ++ G ++K ++G+S+ + +++ R+ G +
Sbjct: 609 LKNNF---LKDDGVYIENGEIMYGVINKKVVGASAG-GLIHIIFREKGPVVCKRFFSGVQ 664
Query: 2163 RMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTE 1984
R+ +L + GFSIGIGD + Q + + YIK LK + G T
Sbjct: 665 RVVNFWLLHNGFSIGIGDTVADKATTDSINQTIAAAKAAVMDYIKYARHDWLKVEAGMTL 724
Query: 1983 EETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAI 1804
E+ E+ + R L+ RD G +L +N M V GSKGSFINISQM ACVGQQ++
Sbjct: 725 RESFEANVNRVLNQARDDVGNHAETSLPDFNNVKQMVVSGSKGSFINISQMSACVGQQSV 784
Query: 1803 SGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVK 1624
G R P GF RSLPHF + TPE++GFV NS+ GLT EFFFH M GREGL+DTAVK
Sbjct: 785 EGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREGLIDTAVK 844
Query: 1623 TAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVV---- 1456
TAETGY+QRRLVK LED+ YDGTVR+S +VI+F +GEDG+D A +E + +
Sbjct: 845 TAETGYIQRRLVKALEDVMVCYDGTVRNSTNNVIQFAYGEDGIDGAQVETQTLLTLKLND 904
Query: 1455 -DFTHVLE---HAKNIQTTKEQPIPVD---KLDEVLKAEI-QKKFKGKYV-HFADKLSEY 1303
DF H+ H + +P D +L ++L E Q +F + H + +
Sbjct: 905 ADFRHMFRVDLHDGGFKKGTLRPGLGDWSQELQDLLDEEFAQLEFDRNLLRHEIFQSDQV 964
Query: 1302 ITQTEIKKSKKWQNGKA--HCGNHETADLKTKESCKICKNL---------------EAYK 1174
+ + ++ N + H + DL E +N+ EA
Sbjct: 965 QVRLPMNVARLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGDDPISREAQM 1024
Query: 1173 TSLLANSCLTKTQLCSFIELCYYKVARAITE----------------PGTAVGAIAATSI 1042
+ L ++ LCS + + + + + E PG G +AA SI
Sbjct: 1025 NATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCGTLAAQSI 1084
Query: 1041 GEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDES--LAR 868
GEP+TQMTL TFH+AGV+S N+T GVPR+KEIIN + I TP +T L + Y +S A+
Sbjct: 1085 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLTEQYSQSQESAK 1144
Query: 867 RVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSK------------------------ 760
++ + TTL + +E Y PD +++ +
Sbjct: 1145 VIQTALAHTTLQTVTSAVEVHYDPDPSATVIEEDKDFVEAFFAIPDEEVEASLERQSPWL 1204
Query: 759 -RIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGK-----TMMAIR-----PPSTSK 613
R+ L + ++ ++++ A SK+ V H + ++ IR P ++
Sbjct: 1205 LRLELDRAQMLDKNLTMADVASKISAMFGQDIFVMHSEDNAENLILRIRVVDNDPEKEAQ 1264
Query: 612 LSKTMTMQ-ILKYSLANVVVKGIPSVNRCVIHADEKK--------GDF-----YSLLVEG 475
+ + ++ + LA + +KGI + + I + K GD+ + L +G
Sbjct: 1265 GEEEIFLKNLASQMLAEIDLKGIKGIRKVYIVQQDNKTRRVDPITGDWRTVSEWVLETDG 1324
Query: 474 TDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVML 295
++ VL+ GVD +T+ NN + V V GIEAAR+ ++ E A ++ G ++ RH+ L
Sbjct: 1325 SNLAEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSLLRETRAVIEFDGSYVNYRHLAL 1384
Query: 294 LADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIM 115
L D+MT +G ++ ITR+G+ + L+ +FE+T++ L EAA D GV++ +++
Sbjct: 1385 LCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVELLIEAASMGDVDDCKGVAQNVLL 1444
Query: 114 GTPMTVGTGTFKL 76
G +GTG F L
Sbjct: 1445 GQMAPMGTGAFDL 1457
>gi|7521935|pir||T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - Nosema locustae
gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Nosema
locustae]
Length = 1553
Score = 664 bits (1714), Expect = 0.0
Identities = 472/1432 (32%), Positives = 710/1432 (48%), Gaps = 97/1432 (6%)
Frame = -1
Query: 4053 PANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCIC 3874
P G +D +MG C GHFG+ +L P+FH+GF ++L+C+C
Sbjct: 43 PKESGLIDLRMGTTERDYLCATCNQDNYVCAGHFGHIELVKPMFHVGFISRIKKVLECVC 102
Query: 3873 KNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKR--IVAACKKGSTCSHCGLKNGTVK 3700
CS + + N N + +++ HK I CK C C + +K
Sbjct: 103 FYCSKVRI-------------NKNKTTITKESKHKLNFIWGICKNKMVCEDCNNRQPVIK 149
Query: 3699 KAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEG 3520
K + L FA M G +LN V +F I
Sbjct: 150 K----------------EGLSLFAYMKGEENNEGK-------VMLNGERVYNIFKKINNE 186
Query: 3519 DIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTT--EDDVTMKLMEIMLTN 3346
D+ L + P ++L+ + V P +RPS+V E GT EDD+T K +I+ +N
Sbjct: 187 DLEFLGFNI-KYSRPEYMILSVLLVAPPAVRPSIVME---GTLRGEDDLTYKYSDIIKSN 242
Query: 3345 DVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQ 3169
LKK++ +GAP+ + + + +Q A I++E+SG P +Q R ++A + RLKGK+
Sbjct: 243 QNLKKYEEEGAPAHIIRDYEQLVQFHVATLIDNEISGQPQALQKNGRPLKAISARLKGKE 302
Query: 3168 GRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVI 2989
GR RGNL GKRVDFS R+VI+ DPN+ ++++GVP+ VAM TFPE V + N+ K+R+LV
Sbjct: 303 GRLRGNLMGKRVDFSARSVITADPNISLEELGVPMKVAMIHTFPERVTSFNLNKLRKLVS 362
Query: 2988 NGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLH 2809
NG + +PGANYL+ ++ G + L + + D + L G +ERH+ + D+VLFNRQPSLH
Sbjct: 363 NGPNKYPGANYLI-RRDGQRIDLNFSRGDVI---LEEGYVVERHMLNGDLVLFNRQPSLH 418
Query: 2808 KISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNL 2629
K+S+M+H+ KVM G TFR N A PYNADFDGDEMNLH+PQ+Y +KAE SELM V ++
Sbjct: 419 KMSMMAHKVKVMDGLTFRLNLSATAPYNADFDGDEMNLHMPQSYNSKAELSELMLVSKHI 478
Query: 2628 ITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXX 2449
I+P+S +P++ IQD + G LT K F+ R E A + A+ K
Sbjct: 479 ISPQSNKPVMGIIQDTLLGVCRLTSKGVFIKREEFCNLVYAS-NLVARANIKPAIARPKI 537
Query: 2448 XXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGC 2269
L+TGKQL L + LN V+I + VLL G
Sbjct: 538 -----LYTGKQLFSLTLP-------KLNFFRDK---------------VVIMDGVLLNGV 570
Query: 2268 LDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRG-FSIGIGDVRPSEQ 2092
+ K +G++ ++ +++ DYG + + L ++ +L+ FS+GIGD S +
Sbjct: 571 ICKKSVGTAQG-SLIHIIANDYGHEEITRFIDSLQKLISTYLTLISTFSVGIGDTISSPE 629
Query: 2091 LLREKGQLVDNGYSKCSQYIKELEE-GKLKAQPGCTEEETLESIILRELSTIRDHAGQVC 1915
+ + + + ++ Q I + G L+ PG +ETLES I L+ RD +G
Sbjct: 630 TMAHISRAIGDAKAEVKQLIYDSRRRGSLEKLPGMNLQETLESKINLALNKARDISGTRA 689
Query: 1914 LRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKT 1735
+ +L+ N M GSKGS+INISQ+ +CVGQQ I R P GF +R+LPHF +
Sbjct: 690 VESLNHLNGLKQMLKAGSKGSYINISQITSCVGQQNIESKRIPFGFRQRTLPHFVKNDYG 749
Query: 1734 PEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYD 1555
PE++GFV NS+ SGL P EFFFH MGGREGL+DTA KTAETGY+QRR+VK +ED YD
Sbjct: 750 PESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDTACKTAETGYIQRRIVKAMEDARIEYD 809
Query: 1554 GTVRSSVGDVIEFVFGEDGLDPAMMEAK-----------DGSVVDFT--HVLEHAKNIQT 1414
G+VR S V +F++GED D +E + SV F +LE+ +Q
Sbjct: 810 GSVRGS-STVYQFMYGEDNFDSTYLETQAFPVESRCSEIKLSVCSFKLHGMLENDSALQA 868
Query: 1413 TKEQPIPVDKLDEV---------------LKAEIQKKFKGK--------YVHFADKLSEY 1303
E+ + ++D L A Q+ +K K V + L ++
Sbjct: 869 IMEKEDRIFEMDACKYGGRDYTLPFNIARLVATAQRDYKVKVSDVDPYAVVRLKESLLDF 928
Query: 1302 ITQTEIKKSKKWQNGKAH----CGNHETADLKT------------------------KES 1207
++Q + K + + K+ C H+ ++ + S
Sbjct: 929 VSQYYCMQKKMYMHEKSPKTTLCEQHKETEVNSINVVDNALQSTSPNISEDSFVHAFIRS 988
Query: 1206 CKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPST 1027
C K + Y+ S L + F+ R I VG +AA SIGEP+T
Sbjct: 989 CLRIKKVINYRISTLGVEWIANEIKKKFV--------RGIISTNEMVGTLAAQSIGEPAT 1040
Query: 1026 QMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIE 847
QMTL TFH+AGVA ITQGVPR+KEIIN K I TP L A++V + IE
Sbjct: 1041 QMTLNTFHYAGVAQA-ITQGVPRLKEIINVAKNIRTPSHKIYLKPGSTIEQAKKVASEIE 1099
Query: 846 KTTLGEICDYIEEVY---------------------LPDDYFLLVKLNSKRIRLL--QLE 736
+ +C I+ +Y PD+Y L LN +RL+ +
Sbjct: 1100 YINIEMVCSEIKIIYDPKVDTTIINEDRDFVEAYFEFPDEYVSLDTLNPWLLRLVVARDR 1159
Query: 735 VCMESISYAIATSKVCPQMRGCKIVAHGKT---MMAIRPPSTSKLSKTMTMQILKYSLAN 565
+ ++ + K+ + H + IR + + L ++
Sbjct: 1160 LISNNLDFEFIAQKIKKVFHQDIFLLHSDANAEELVIRIRVLGMSANEEFYRRLLNTILG 1219
Query: 564 VVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLG 385
+ +KGI ++ R + + ++ + L +G + + +L + K N+ L V +VLG
Sbjct: 1220 IHLKGITNIRRIYLLREREE---WILQTDGKNLKQLLLVEDILANKVYCNDLLEVYEVLG 1276
Query: 384 IEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLA 205
IEA R CI+ E+ ++A G ++ RH+ LL DVMT +G + GITR+G + L
Sbjct: 1277 IEAVRECILRELRNVIEAEGSYVNFRHLYLLCDVMTLKG-LRGITRHGANRAATGALKRC 1335
Query: 204 SFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKYDKKAV 49
SFE+T++ L EA+ F++R+ GV+E I++G +GTG + DKKA+
Sbjct: 1336 SFEETVEILLEASCFAERNYCRGVTENIMLGQLAPIGTGNTICI--LDKKAL 1385
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit
Length = 1340
Score = 661 bits (1705), Expect = 0.0
Identities = 455/1364 (33%), Positives = 702/1364 (51%), Gaps = 119/1364 (8%)
Frame = -1
Query: 3948 YFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHK 3769
+ +L PVFHIGF TI++L+C+C CS +L+ P ++ +++++ + Y K
Sbjct: 1 HIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPKI--KEILSKSKAYPR-----K 53
Query: 3768 RIVAA---------CKKGSTCSHCGL----KNGTVKKAVGAVLKIAFASPVSVDELGKFA 3628
R+VA C+ G + L + G KK G + + + L A
Sbjct: 54 RLVAVYDLCKSRKVCEGGDEMDNAKLGEETQEGDQKKGHGGCGR--YQPKIKRTGLELIA 111
Query: 3627 TMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMP 3448
+N++ + K +L V ++F I + + VL + P+ +++T MP
Sbjct: 112 EWKDTNEDSQE-----KKIVLTADRVHEIFKRISDDECQVLGM-DHRYSRPDWMIVTVMP 165
Query: 3447 VPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQ 3268
VPP+ +RP+VV A +DD+T KL +I+ N+ L++++++GA S + E + LQ
Sbjct: 166 VPPLAVRPAVVMFGSA-RNQDDLTHKLADIIKANNQLRRNEQNGAASHIISEDMKMLQYH 224
Query: 3267 CALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNL 3091
A + ++E+ GLP +Q R +++ QRLKGK+GR RGNL GKRVDFS RTVI+PDPNL
Sbjct: 225 VATFTDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNL 284
Query: 3090 RIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYG 2911
RIDQVGVP +A +TFPE+V NI++M++LV G++ +PGA Y++ L +
Sbjct: 285 RIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERIDLRFHP 344
Query: 2910 KRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTP 2731
K +L +L++G +ERH+ DND ++FNRQP+LHK+S+M H+ KV+P TFR N TP
Sbjct: 345 KASDL--HLQIGYKVERHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLSVTTP 402
Query: 2730 YNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHK 2551
YNADFDGDEMNLHLPQ+ E KAE S L V +ITP++ P++ +QD +T +T +
Sbjct: 403 YNADFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKR 462
Query: 2550 DTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVS 2371
D FL R +V L + P LWTGKQL L+I P + + +
Sbjct: 463 DVFLDRGQVMNLLMFL------PRWDGHVPQPAILKPKPLWTGKQLFSLVI-PGRTNCIR 515
Query: 2370 LNLTAKNKSYTGNLELCSK-DSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGED 2194
+ T ++ G + S D+ V+I + +L++G L K LG+SS ++ +++ +YG
Sbjct: 516 THSTHPDEEDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSG-SLAHVVFMEYGWV 574
Query: 2193 AAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEG 2014
A + + + +L G SIGIGD Q + + + I++
Sbjct: 575 IAGEMYGHIQTLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAHND 634
Query: 2013 KLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQ 1834
L+ PG T +T E+++ R L+ RD G ++LS YN M V GSKGS INISQ
Sbjct: 635 DLEPTPGNTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQ 694
Query: 1833 MIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGG 1654
+IACVGQQ + G R P GF R+LPHF + PE++GFV NS+ +GLTP+EF+FH MGG
Sbjct: 695 VIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 754
Query: 1653 REGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLD------ 1492
REGL+DTAVKTAETGY+QRRL+K +E + YDGTVR+ V +++ +GEDGLD
Sbjct: 755 REGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEF 814
Query: 1491 ---PAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFA 1321
P + + F + +N++ + + D + + L + +
Sbjct: 815 QTMPTLKPSNRAFERQFKFDATNERNMKKCLSEEVIKDLMGDALAVSQLDREWEQLREDR 874
Query: 1320 DKLSEYITQTEIK-------KSKKWQNGKA-HCGNHETADL---KTKESCK-ICKNL--- 1186
D L + K + W K H+ DL K E + +CK L
Sbjct: 875 DILRSIFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPTDLHPIKVVEGVEDLCKRLIVV 934
Query: 1185 --------EAYKTSLLANSCLTKTQLCS----------------FIELCYYKVARAITEP 1078
+A + L CL ++ LC+ I + +A P
Sbjct: 935 AGGDRLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHP 994
Query: 1077 GTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAAL 898
G VGA+AA S+GEP+TQMTL TFH+AGV++ N+T GVPR+KEIIN K TP +T L
Sbjct: 995 GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYL 1054
Query: 897 LD--PYDESLARRVKARIEKTTLGEICDYIEEVYLPDD---------------------- 790
+ D A+ V R+E TTL ++ Y PD
Sbjct: 1055 IGQAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFD 1114
Query: 789 ------YFLLVKLNSKRI--RLLQLEVCMESISYAIATSKVC--------PQMRGCKIVA 658
+ L ++L+ KR+ + L +E E I+ C + +I+
Sbjct: 1115 VSKISAWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMN 1174
Query: 657 HGKTMMAIRPPSTSKLSKTMTMQILKYS-LANVVVKGIPSVNRCVIH---ADEKK----- 505
++ M K+ + ++ ++ + L+++ ++GI ++ + +H ++KK
Sbjct: 1175 SDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKKRISIT 1234
Query: 504 --GDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEII 346
G+F + L +GT VLS VDP +T N+ + V +LGIEA R I E+
Sbjct: 1235 EEGEFKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSIEKEMN 1294
Query: 345 ATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVL 214
+ G ++ RH+ LL D MT +G ++ ITR+G+ + + L
Sbjct: 1295 HVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGAL 1338
>gi|133352|sp|P25202|RPC1_GIALA DNA-DIRECTED RNA POLYMERASE III
LARGEST SUBUNIT
gi|9364|emb|CAA42895.1| subunit A of DNA dependent RNA polymerase III
[Giardia intestinalis]
gi|29250233|gb|EAA41730.1| GLP_554_28640_33865 [Giardia lamblia ATCC
50803]
Length = 1741
Score = 659 bits (1700), Expect = 0.0
Identities = 439/1162 (37%), Positives = 622/1162 (52%), Gaps = 85/1162 (7%)
Frame = -1
Query: 3285 EHLQIQCALYINSEMSGLP-PDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVI 3109
+HL + + INSE+ P QP A + KG+ N+C +D
Sbjct: 540 QHLVSESSNAINSELKAEDLPQNQPLFAKEVYDPAQKGESNNIDNNVC--EID------- 590
Query: 3108 SPDPNLRID-----QVGVPIHVAMTLTFPEIVNASNIEKMRQL----VINGSDVHPGANY 2956
L+++ QVG A T+ + + + K+ + + N S H
Sbjct: 591 ----ELKLEDTADYQVGESAGQASTVAVEQPPESRTVLKLNSIASLQLTNASSQH----- 641
Query: 2955 LVEKKTGNKKLLKYGKRDE--LAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRA 2782
L K LL+ +R +A +LR D + RHL ND +LFNRQPSLH++SIM A
Sbjct: 642 LSTFKLNTVSLLQKDRRGRQAIANSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNA 701
Query: 2781 KVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPL 2602
+ RTF FN C+P+NADFDGDEMN+ Q EA+AEA LM N+I+PR GE +
Sbjct: 702 VIHENRTFSFNPVVCSPFNADFDGDEMNIFYMQGQEARAEAGILMGSHENIISPRHGECM 761
Query: 2601 VAAIQDFITGGYLLTHKDTFLPRAEVYR--------FAAALIDASAKKQTKXXXXXXXXX 2446
+ QDF+TG YLL+ K F+ R E + F A S +
Sbjct: 762 IGLTQDFLTGIYLLSGKGIFMTRQEYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHDR 821
Query: 2445 XPVE----------------------LWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGN 2332
E L++GKQ++ ++++ + V++NL +K+Y +
Sbjct: 822 RGTEEDTVGFVKVPCLSQPCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTYKKD 881
Query: 2331 LE---LCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLAR 2161
+ L D Y+II+NS L G L K+ L +SSK IFY L+++YG +A M R A+
Sbjct: 882 SDRRALSVNDDYIIIQNSEHLVGRLTKTFL-ASSKNCIFYFLVQNYGPVSAARIMLRFAK 940
Query: 2160 MAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEE 1981
+A FL N GF+IGI DV PS+++L +K +V GY K + I++ E GKL+A PG T +
Sbjct: 941 VAARFLMNYGFTIGIDDVMPSQRVLGKKEVIVQEGYEKAQEKIRDYESGKLEAIPGSTVQ 1000
Query: 1980 ETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAIS 1801
ETLE+ + + LS +R+ Q+ L+ L N PL M++CGSKGS INI+QMI +GQQ+
Sbjct: 1001 ETLEATLNQILSNVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFG 1060
Query: 1800 GHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKT 1621
G R PD F RS P+F K P AKGF+ NSFY+GL P EF H GR+G++D+A KT
Sbjct: 1061 GSRAPDDFYTRSTPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKT 1120
Query: 1620 AETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHV 1441
A+TGY+QRRLVKCLEDL SYD TVR+S V++F FG DG DP +E G D +
Sbjct: 1121 ADTGYLQRRLVKCLEDLSVSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCFDLDTL 1180
Query: 1440 LEHAKNIQTTKEQ-----PIPVD--KLDEVLKAEIQKKFKGKYVHFADK--LSEYITQTE 1288
L H + +++ P+ +D K + L + K F G+ ++ ++ Y Q+
Sbjct: 1181 LRHIILLNRSQDLAEGAFPVLLDRYKAEAELDVLLNKDFYGQEACLIERSNVTSYFQQSI 1240
Query: 1287 IKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCY 1108
+ K + I + + + LTK + F+
Sbjct: 1241 LPK--------------------LTTNTHIATTVAPALAASFLQTTLTKKDIDDFLRQVR 1280
Query: 1107 YKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKT 928
K R EPG+ GA+AA S+GEPSTQMTLK+FH AG+ASMNITQGVPR+KEI++ V
Sbjct: 1281 RKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVK 1340
Query: 927 ISTPIITAAL-LDPYDESL-----------ARRVKARIEKTTLGEICDYIEEVYLPDDYF 784
ISTPI T L +D E L AR +K IE T LG+I I E Y
Sbjct: 1341 ISTPITTVELHVDVDKEELAATVTEKYLEKARMMKNIIECTYLGQISASIIECYSQSVCH 1400
Query: 783 LLVKLNSKRIR------LLQLEVCMESISYAIATSKVCPQMRGCKIVA-HGKTMMAIRPP 625
+ V L+ K I ++ +E + SI + K+ Q + V+ H T ++RP
Sbjct: 1401 IEVNLDMKIIADMGLAGIITVETVVASILHNDKAKKLVGQDQSSGSVSIHSATRFSVRPL 1460
Query: 624 STSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIH---------ADEKKGDFYSLLVEGT 472
+ S+ +Q LK L + V GI + +R VI+ Y+LLVEG
Sbjct: 1461 TQSRDDLLFDIQSLKLLLPMIPVSGISTCSRAVINEYKEFCQGATSSAPLTKYNLLVEGI 1520
Query: 471 DFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLL 292
+++L+ G+D +T NN + VA+ LGIEAA + I NEI A MD+HG+ +D RH+ LL
Sbjct: 1521 GLQNILNVSGIDFTRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLL 1580
Query: 291 ADVMTYRGEVLGITRNGLVKMK-DSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIM 115
AD+M +RG VLG TR GL KMK DSV++LASFEKT +HLF AA ++ D +GV+E II+
Sbjct: 1581 ADIMCFRGRVLGFTRFGLTKMKADSVIMLASFEKTGEHLFNAALGNKVDEANGVTESIIL 1640
Query: 114 GTPMTVGTGTFKLMQK--YDKK 55
G PM++GTG+F L+Q +D+K
Sbjct: 1641 GKPMSMGTGSFSLLQAPYFDEK 1662
Score = 149 bits (376), Expect = 6e-34
Identities = 85/180 (47%), Positives = 113/180 (62%), Gaps = 7/180 (3%)
Frame = -1
Query: 3477 PNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKT- 3301
P D++LT +PVPP C+RPSV S AGTTED++T L+ I+ ND LK+ GA + +
Sbjct: 303 PQDVILTHIPVPPSCLRPSVQSGSGAGTTEDNLTSHLVRILTINDKLKEAMVSGAVATSK 362
Query: 3300 LFETWEHLQIQCAL-YINSEMSGLPP-----DMQPKRAMRAFTQRLKGKQGRFRGNLCGK 3139
++ W+ L + +L YI G+ P D K RLKGK GRFR NL GK
Sbjct: 363 VYAKWDQLNMDVSLLYIGKIPGGVQPVKNKTDSGTKEGT-GIIDRLKGKAGRFRSNLSGK 421
Query: 3138 RVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGAN 2959
RV+FSGRTVISP+P L + QV +P +A LTFPEIV + NI +R+L++NG +PGAN
Sbjct: 422 RVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNGK-TYPGAN 480
Score = 51.6 bits (122), Expect = 2e-04
Identities = 45/207 (21%), Positives = 80/207 (37%), Gaps = 1/207 (0%)
Frame = -1
Query: 4122 MRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYF 3943
+ + + V I LYE PA G LD ++G+ C+GHFG
Sbjct: 40 LMKLSEVQITTPILYEHYPS---PATNGVLDKRLGLSDKVGKCATCGKDTKMCIGHFGTI 96
Query: 3942 DLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRI 3763
L +PVFH G +L +C CS + ++ + +V+N A+ K
Sbjct: 97 SLALPVFHPGLINDARTMLSIVCPFCSRVKISEADRLKY--KVLNHKFSL----AIVKEA 150
Query: 3762 VAACKKGSTCSHCGLKNGTVKKAVG-AVLKIAFASPVSVDELGKFATMFSSNQEVGDHVR 3586
KK C C + KK+ G VL+ + L +++ + +
Sbjct: 151 QEQAKKQVNCPFCHAPSTICKKSQGFRVLREMHYEERATKILADVIKHQKDIEKIQELDQ 210
Query: 3585 KMKFTLLNPLFVQKLFSNIKEGDIPVL 3505
+++ +++P+ + + E D P L
Sbjct: 211 RLRNHVVDPIQALHILQKVPECDYPYL 237
>gi|102174|pir||S22812 DNA-directed RNA polymerase (EC 2.7.7.6) III
largest chain - Giardia lamblia
Length = 1735
Score = 659 bits (1700), Expect = 0.0
Identities = 439/1162 (37%), Positives = 622/1162 (52%), Gaps = 85/1162 (7%)
Frame = -1
Query: 3285 EHLQIQCALYINSEMSGLP-PDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVI 3109
+HL + + INSE+ P QP A + KG+ N+C +D
Sbjct: 540 QHLVSESSNAINSELKAEDLPQNQPLFAKEVYDPAQKGESNNIDNNVC--EID------- 590
Query: 3108 SPDPNLRID-----QVGVPIHVAMTLTFPEIVNASNIEKMRQL----VINGSDVHPGANY 2956
L+++ QVG A T+ + + + K+ + + N S H
Sbjct: 591 ----ELKLEDTADYQVGESAGQASTVAVEQPPESRTVLKLNSIASLQLTNASSQH----- 641
Query: 2955 LVEKKTGNKKLLKYGKRDE--LAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRA 2782
L K LL+ +R +A +LR D + RHL ND +LFNRQPSLH++SIM A
Sbjct: 642 LSTFKLNTVSLLQKDRRGRQAIANSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNA 701
Query: 2781 KVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPL 2602
+ RTF FN C+P+NADFDGDEMN+ Q EA+AEA LM N+I+PR GE +
Sbjct: 702 VIHENRTFSFNPVVCSPFNADFDGDEMNIFYMQGQEARAEAGILMGSHENIISPRHGECM 761
Query: 2601 VAAIQDFITGGYLLTHKDTFLPRAEVYR--------FAAALIDASAKKQTKXXXXXXXXX 2446
+ QDF+TG YLL+ K F+ R E + F A S +
Sbjct: 762 IGLTQDFLTGIYLLSGKGIFMTRQEYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHDR 821
Query: 2445 XPVE----------------------LWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGN 2332
E L++GKQ++ ++++ + V++NL +K+Y +
Sbjct: 822 RGTEEDTVGFVKVPCLSQPCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTYKKD 881
Query: 2331 LE---LCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLAR 2161
+ L D Y+II+NS L G L K+ L +SSK IFY L+++YG +A M R A+
Sbjct: 882 SDRRALSVNDDYIIIQNSEHLVGRLTKTFL-ASSKNCIFYFLVQNYGPVSAARIMLRFAK 940
Query: 2160 MAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEE 1981
+A FL N GF+IGI DV PS+++L +K +V GY K + I++ E GKL+A PG T +
Sbjct: 941 VAARFLMNYGFTIGIDDVMPSQRVLGKKEVIVQEGYEKAQEKIRDYESGKLEAIPGSTVQ 1000
Query: 1980 ETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAIS 1801
ETLE+ + + LS +R+ Q+ L+ L N PL M++CGSKGS INI+QMI +GQQ+
Sbjct: 1001 ETLEATLNQILSNVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFG 1060
Query: 1800 GHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKT 1621
G R PD F RS P+F K P AKGF+ NSFY+GL P EF H GR+G++D+A KT
Sbjct: 1061 GSRAPDDFYTRSTPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKT 1120
Query: 1620 AETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHV 1441
A+TGY+QRRLVKCLEDL SYD TVR+S V++F FG DG DP +E G D +
Sbjct: 1121 ADTGYLQRRLVKCLEDLSVSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCFDLDTL 1180
Query: 1440 LEHAKNIQTTKEQ-----PIPVD--KLDEVLKAEIQKKFKGKYVHFADK--LSEYITQTE 1288
L H + +++ P+ +D K + L + K F G+ ++ ++ Y Q+
Sbjct: 1181 LRHIILLNRSQDLAEGAFPVLLDRYKAEAELDVLLNKDFYGQEACLIERSNVTSYFQQSI 1240
Query: 1287 IKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCY 1108
+ K + I + + + LTK + F+
Sbjct: 1241 LPK--------------------LTTNTHIATTVAPALAASFLQTTLTKKDIDDFLRQVR 1280
Query: 1107 YKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKT 928
K R EPG+ GA+AA S+GEPSTQMTLK+FH AG+ASMNITQGVPR+KEI++ V
Sbjct: 1281 RKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVK 1340
Query: 927 ISTPIITAAL-LDPYDESL-----------ARRVKARIEKTTLGEICDYIEEVYLPDDYF 784
ISTPI T L +D E L AR +K IE T LG+I I E Y
Sbjct: 1341 ISTPITTVELHVDVDKEELAATVTEKYLEKARMMKNIIECTYLGQISASIIECYSQSVCH 1400
Query: 783 LLVKLNSKRIR------LLQLEVCMESISYAIATSKVCPQMRGCKIVA-HGKTMMAIRPP 625
+ V L+ K I ++ +E + SI + K+ Q + V+ H T ++RP
Sbjct: 1401 IEVNLDMKIIADMGLAGIITVETVVASILHNDKAKKLVGQDQSSGSVSIHSATRFSVRPL 1460
Query: 624 STSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIH---------ADEKKGDFYSLLVEGT 472
+ S+ +Q LK L + V GI + +R VI+ Y+LLVEG
Sbjct: 1461 TQSRDDLLFDIQSLKLLLPMIPVSGISTCSRAVINEYKEFCQGATSSAPLTKYNLLVEGI 1520
Query: 471 DFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLL 292
+++L+ G+D +T NN + VA+ LGIEAA + I NEI A MD+HG+ +D RH+ LL
Sbjct: 1521 GLQNILNVSGIDFTRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLL 1580
Query: 291 ADVMTYRGEVLGITRNGLVKMK-DSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIM 115
AD+M +RG VLG TR GL KMK DSV++LASFEKT +HLF AA ++ D +GV+E II+
Sbjct: 1581 ADIMCFRGRVLGFTRFGLTKMKADSVIMLASFEKTGEHLFNAALGNKVDEANGVTESIIL 1640
Query: 114 GTPMTVGTGTFKLMQK--YDKK 55
G PM++GTG+F L+Q +D+K
Sbjct: 1641 GKPMSMGTGSFSLLQAPYFDEK 1662
Score = 149 bits (376), Expect = 6e-34
Identities = 85/180 (47%), Positives = 113/180 (62%), Gaps = 7/180 (3%)
Frame = -1
Query: 3477 PNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKT- 3301
P D++LT +PVPP C+RPSV S AGTTED++T L+ I+ ND LK+ GA + +
Sbjct: 303 PQDVILTHIPVPPSCLRPSVQSGSGAGTTEDNLTSHLVRILTINDKLKEAMVSGAVATSK 362
Query: 3300 LFETWEHLQIQCAL-YINSEMSGLPP-----DMQPKRAMRAFTQRLKGKQGRFRGNLCGK 3139
++ W+ L + +L YI G+ P D K RLKGK GRFR NL GK
Sbjct: 363 VYAKWDQLNMDVSLLYIGKIPGGVQPVKNKTDSGTKEGT-GIIDRLKGKAGRFRSNLSGK 421
Query: 3138 RVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGAN 2959
RV+FSGRTVISP+P L + QV +P +A LTFPEIV + NI +R+L++NG +PGAN
Sbjct: 422 RVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNGK-TYPGAN 480
Score = 51.6 bits (122), Expect = 2e-04
Identities = 45/207 (21%), Positives = 80/207 (37%), Gaps = 1/207 (0%)
Frame = -1
Query: 4122 MRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYF 3943
+ + + V I LYE PA G LD ++G+ C+GHFG
Sbjct: 40 LMKLSEVQITTPILYEHYPS---PATNGVLDKRLGLSDKVGKCATCGKDTKMCIGHFGTI 96
Query: 3942 DLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRI 3763
L +PVFH G +L +C CS + ++ + +V+N A+ K
Sbjct: 97 SLALPVFHPGLINDARTMLSIVCPFCSRVKISEADRLKY--KVLNHKFSL----AIVKEA 150
Query: 3762 VAACKKGSTCSHCGLKNGTVKKAVG-AVLKIAFASPVSVDELGKFATMFSSNQEVGDHVR 3586
KK C C + KK+ G VL+ + L +++ + +
Sbjct: 151 QEQAKKQVNCPFCHAPSTICKKSQGFRVLREMHYEERATKILADVIKHQKDIEKIQELDQ 210
Query: 3585 KMKFTLLNPLFVQKLFSNIKEGDIPVL 3505
+++ +++P+ + + E D P L
Sbjct: 211 RLRNHVVDPIQALHILQKVPECDYPYL 237
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit
Length = 1343
Score = 656 bits (1693), Expect = 0.0
Identities = 442/1364 (32%), Positives = 703/1364 (51%), Gaps = 119/1364 (8%)
Frame = -1
Query: 3948 YFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHK 3769
+ +L PVFH+ F TI++++C+C CS +L+ PE +++ + ++ + Y ++ H
Sbjct: 1 HIELAKPVFHVAFLVKTIKIMRCVCFFCSKLLVDPESNKM--KDILGKSKGYPQKRLAH- 57
Query: 3768 RIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSN------- 3610
+ CK C G + + A +P G++
Sbjct: 58 -VYDLCKTRKVCDG-GDEMDKKNQDPTAGESTEENAPKGHGGCGRYQPKLRRTGLEIVAE 115
Query: 3609 -QEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVC 3433
+ + + ++ K +++ V ++F I + + +++ P+ ++LT PVPP+
Sbjct: 116 WKNINEESQERKM-IVSAERVLEIFKRISDEE-SLMLGMDPRFARPDWMILTVFPVPPLP 173
Query: 3432 IRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYI 3253
+RP+VV A +DD+T KL +I+ N+ L++++++GA + +FE + LQ C+ +
Sbjct: 174 VRPAVVMFGSA-RNQDDLTHKLADIVKANNQLRRNEQNGAAAHIIFEDSKMLQYHCSTLV 232
Query: 3252 NSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQV 3076
++EM GLP +Q R +++ QRLKGK+GR RGNL KRVDFSGRTVI+PDPNLR+DQV
Sbjct: 233 DNEMPGLPRAVQKSGRPLKSVKQRLKGKEGRVRGNLMDKRVDFSGRTVITPDPNLRVDQV 292
Query: 3075 GVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDEL 2896
GVP +A LTFPE+V NI+ M++ V G++V+PGA Y++ L + K +L
Sbjct: 293 GVPRSIAHNLTFPELVTPFNIDVMQERVRRGANVYPGAKYIIRDNGERIDLRFHPKASDL 352
Query: 2895 AKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADF 2716
+L++G +ERH+ DNDVV+FNRQP+LHK+S+M HR KV+P TFR N TPYNADF
Sbjct: 353 --HLQIGYKVERHMQDNDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRMNLSVTTPYNADF 410
Query: 2715 DGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLP 2536
DGDEMNLHLPQ+ E +AE L V +ITP++ P++ +QD +T +T +D FL
Sbjct: 411 DGDEMNLHLPQSLETRAEIMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLT 470
Query: 2535 RAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTA 2356
RA++ L + LWTGKQ+ L+I P + + + + T
Sbjct: 471 RAQMMHLLMFLPTWDGRMPQPAIIKPE------PLWTGKQIFSLVI-PGRVNVIRTHSTH 523
Query: 2355 KNKSYTGNLELCSK-DSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDA 2179
+ +G + S D+ V+I + L++G L K LG+S+ ++ +++ + G + A +
Sbjct: 524 PDGEDSGPYKWISPGDTKVLIEDGELISGILCKKTLGTSAG-SLVHIVFLEMGFEVAGEL 582
Query: 2178 MWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQ 1999
+ + +L G SIGIGD +Q E + + + + I++ +L+
Sbjct: 583 YGNIQTVVNNWLLIEGHSIGIGDTIADQQTYHEIQETIRKAKADVIEVIEKAHNDELEPT 642
Query: 1998 PGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACV 1819
PG T +T E+ + R L+ RD G ++LS++N M V GSKGS INISQ+IACV
Sbjct: 643 PGNTLRQTFENQVNRILNDARDKTGSKAQKSLSEFNNFKAMVVAGSKGSKINISQVIACV 702
Query: 1818 GQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLV 1639
GQQ G R P GF R+LPHF + PE++GFV NS+ +GLTP+EF+FH MGGREGL+
Sbjct: 703 GQQNAEGKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 762
Query: 1638 DTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKD-GS 1462
DTAVKTAETGY+QRRL+K +E + YDGTVR+ V +++ +GEDGLD +E + +
Sbjct: 763 DTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLGYGEDGLDACHVEFQSLPT 822
Query: 1461 VVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIK 1282
+ T E T E+ + LK ++ K +G++ + SE++ +
Sbjct: 823 LKPSTRAFERQFRFDPTDER-----MMKRCLKEDVIKGLRGEHRLIEELESEWLQLISDR 877
Query: 1281 KSKK--------------------WQNGKA-HCGNHETADLKTKESCK----ICKNL--- 1186
S + W K + +DL +C+ L
Sbjct: 878 DSARQVFSTGDARIVLPCNLQRMIWNAQKIFRIDKRKPSDLDPINVVSGVRDLCQRLTIV 937
Query: 1185 --------EAYKTSLLANSCLTKTQLCS----------------FIELCYYKVARAITEP 1078
+A + + L CL ++ LC+ + + +A P
Sbjct: 938 EGEDMISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHP 997
Query: 1077 GTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAAL 898
G VGA+AA S+GEP+TQMTL TFH+AGV++ N+T GVPR+KEIIN K TP +T L
Sbjct: 998 GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYL 1057
Query: 897 LDP--YDESLARRVKARIEKTTLGEICDYIEEVYLPD----------------------- 793
P D + V R+E TTL ++ Y PD
Sbjct: 1058 NGPAARDAEKCKDVLCRLEHTTLRKVTANTAIYYDPDPMNTVIVEDQEWVSIYYEMPDFD 1117
Query: 792 -----DYFLLVKLNSKRI--RLLQLEVCMESISYAIATSKVC--------PQMRGCKIVA 658
+ L ++L+ KR+ + L +E E I+ C + +I+
Sbjct: 1118 ASRISPWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMN 1177
Query: 657 HGKTMMAIRPPSTSKLSKTMTMQILKYS-LANVVVKGIPSVNRCVIH---ADEKK----- 505
+ M K+ + ++ ++ + L+++ ++GI ++ + +H D+KK
Sbjct: 1178 SDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGIEAIAKVYMHLPTTDDKKRIHIT 1237
Query: 504 --GDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEII 346
G+F + L +G+ VLS VDP +T N+ + V LGIEA R I E++
Sbjct: 1238 EEGEFKAVAEWILETDGSSLMKVLSERDVDPVRTYTNDIVEVFATLGIEAVRKAIEREMV 1297
Query: 345 ATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVL 214
+ G ++ RH+ LL DVMT +G ++ ITR+G+ + + L
Sbjct: 1298 HVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGAL 1341
>gi|38104302|gb|EAA50893.1| hypothetical protein MG04652.4
[Magnaporthe grisea 70-15]
Length = 1745
Score = 655 bits (1690), Expect = 0.0
Identities = 471/1462 (32%), Positives = 735/1462 (50%), Gaps = 130/1462 (8%)
Frame = -1
Query: 4068 EGKLQPANYGPLDPKMGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQL 3889
E + +P G DP +G +C GHFG+ +L PV+H GF T ++
Sbjct: 45 ETRTKPREGGLNDPLLGTTDRQYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKI 104
Query: 3888 LQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCS-HCGLKN 3712
L+ + ++ + ++ +P KA + ACK C G K+
Sbjct: 105 LE----------MNNDEQFAQALRLRDP-------KARFAMVWKACKGKKVCEIETGGKD 147
Query: 3711 --GTVKKAVGAVLKIAFASPVSV--DELGKFATMFSSNQEVGDH--VRKMKFTLLNPLFV 3550
++ A G + K+ S D K +++ +E + +++K L+ P
Sbjct: 148 EKDSIDTATG-IEKVPHGGCGSTHPDIRKKALQLYAKVEEAREEGMKKEVKDKLITPEQA 206
Query: 3549 QKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSV-VSEVKAG-TTEDDVT 3376
+ +I E D+ M + + P L++T +PVPP +RPS+ V G +EDD+T
Sbjct: 207 HHILKHIPEDDL-WKMGLNKDYARPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLT 265
Query: 3375 MKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMR 3199
KL +I+ N +K+ +GAP+ E E LQ A Y++++++ +P +Q R ++
Sbjct: 266 YKLGDIIRANGNVKQAHAEGAPNHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIK 325
Query: 3198 AFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNAS 3019
+ RLKGK+GR RGNL GKRVDFS RTVI+ D N+ + +VGVP +A TLT+PE V
Sbjct: 326 SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPH 385
Query: 3018 NIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDV 2839
NI+++ Q V+NG + HPGA Y+V + G + L++ K + + L G +ERHL D
Sbjct: 386 NIDRLHQYVVNGPNEHPGAKYIV-RTDGTRIDLRHVK-NRGSTQLEYGQKVERHLLTGDY 443
Query: 2838 VLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEA 2659
++FNRQPSLHK S+M H+ +VMP TFR N +PYNADFDGDEMNLH+PQT E +AE
Sbjct: 444 IIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEV 503
Query: 2658 SELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQ 2479
EL V N+++P+ PL+ +QD + G Y L +D FL + V + D
Sbjct: 504 KELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDG--- 560
Query: 2478 TKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVI 2299
P WTGKQ+I ++I PD + ++ G D ++
Sbjct: 561 ---IIPQPAILRPRPRWTGKQIISMVI-PDFVT-----------THQGGDWNPLNDDALL 605
Query: 2298 IRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIG 2119
I++ L+ G L K +G++S I ++ + G A+ + R+ +L + G SIG
Sbjct: 606 IQSGELMFGLLTKKNVGAASG-GIIHICYNEQGPARAMAFLNGCQRVVNYWLLHNGHSIG 664
Query: 2118 IGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTI 1939
IGD P + + ++ ++ ++ +L+A PG ET ES + + L+T
Sbjct: 665 IGDTIPDPVTIEKIQAHINEQKAEVAELTDLATTNRLEALPGMNIRETFESKVSKALNTA 724
Query: 1938 RDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLP 1759
R+ AG ++L N +TM+ GSKGS INISQM A VGQQ + G R P GF+ R+LP
Sbjct: 725 REKAGTTTEKSLKDINNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLP 784
Query: 1758 HFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCL 1579
HF + +PEA+GFV NS+ GLTP+EFFFH M GREGL+DTAVKTAETGY+QRRLVK L
Sbjct: 785 HFTKDDFSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 844
Query: 1578 EDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFT---------------- 1447
ED+ A YDGTVR+S+GD+I+F++GEDGLD +E + ++ +
Sbjct: 845 EDVAAKYDGTVRNSLGDIIQFIYGEDGLDGMAIEKQKMDHLNISNGKFDGMYKLDLMTAT 904
Query: 1446 -----HVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIK 1282
+ LE+ I +D+ + +KA+ Q + Y K + Q +
Sbjct: 905 RPRELNALEYGNEIFGDPAVQQLLDEEYDAIKADRQLIREINY----KKKDDNDMQLPLN 960
Query: 1281 KSKKWQNGKA--HCGNHETADLKTKESCKICKNL-----------EAYKTSLLANSCLTK 1141
++ +N K + + +DLK ++ + K K + +S L K
Sbjct: 961 VARVIENAKKLFKIDDAQRSDLKPQDVIPVVKGFLERMVVVPGDDPISKEANYNSSILFK 1020
Query: 1140 TQLCSFIELCYYKVA----------------------RAITEPGTAVGAIAATSIGEPST 1027
QL S L + ++A R+ PG VG +AA SIGEP+T
Sbjct: 1021 AQLRS--RLAFKRLAVRERLNRIAFDHVIGEMESRWQRSFVSPGEMVGVLAAQSIGEPAT 1078
Query: 1026 QMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDP-----YDESLARRV 862
QMTL TFHF G++S N+T GVPR+KEI+N I TP + LDP + + A+ +
Sbjct: 1079 QMTLNTFHFTGISSKNVTLGVPRLKEILNVSAEIKTPGMVVR-LDPKMYPDFKQENAKTL 1137
Query: 861 KA--------------------RIEKTTLGEICDYIEEVYL-PDDY--------FLLVKL 769
++ I+ TT+ E D +E YL P+++ L++L
Sbjct: 1138 RSLVEHTNLRSVTAMTEIYYDPEIQTTTIDEDADMLEGHYLIPEEHQDEPSNQSRWLLRL 1197
Query: 768 NSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHG---------KTMMAIRPPSTS 616
R ++L + +E ++ +I + +V H + I+
Sbjct: 1198 TLDRQKMLDKNLHIEDVAASIKGAYASD-----LVVVHSDNNADEQVIRMRHVIKGDEED 1252
Query: 615 KLSKTM-TMQILK----YSLANVVVKGIPSVNRCVIHADEK----------------KGD 499
K + + + QILK + L + ++GI + R ++ D + + +
Sbjct: 1253 KDGRNIESDQILKRLEEHMLDGLTLRGIKGIERAFLNKDTRLVVKPDGSLLNSKDAPECE 1312
Query: 498 FYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIG 319
+ L +GT R VL GVD +T N+ + D+LGIEAAR+ ++ E+ + G
Sbjct: 1313 EWYLDTQGTSLRQVLCVDGVDSVRTLTNDLYQIVDLLGIEAARTALLGELTQVLAFDGSY 1372
Query: 318 LDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIH 139
++ RH+ LL DVMTYRG + +TR+G+ + L+ SFE+T++ L EAA + D
Sbjct: 1373 VNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAAAIGELDDCR 1432
Query: 138 GVSECIIMGTPMTVGTGTFKLM 73
G+SE +++G +GTG F+++
Sbjct: 1433 GISENVMLGQLAPMGTGAFEVL 1454
>gi|24642282|ref|NP_573071.1| CG17209-PA [Drosophila melanogaster]
gi|22832293|gb|AAF48509.2| CG17209-PA [Drosophila melanogaster]
Length = 1304
Score = 650 bits (1676), Expect = 0.0
Identities = 362/721 (50%), Positives = 476/721 (65%), Gaps = 11/721 (1%)
Frame = -1
Query: 2139 NRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESII 1960
NRGFS GI DV PS++LL+ K L++NGY+KC++YI+ L+ G L+ QPGCT EETLES++
Sbjct: 612 NRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVM 671
Query: 1959 LRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDG 1780
LRELS IR+ A + C L N+ L MA+ GSKGS INISQMIACVGQQAISG R P+G
Sbjct: 672 LRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNG 731
Query: 1779 FEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQ 1600
FE R+LPHFER P A+GFV NSFYSGLTPTEFFFHTM GREGLVDTAVKTAETGY+Q
Sbjct: 732 FENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQ 791
Query: 1599 RRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAK-N 1423
RRLVKCLEDL YDGTVR++V ++++ ++G DGLDP ME ++ VD H ++ +
Sbjct: 792 RRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRN-KPVDLVHQYDNLRAQ 850
Query: 1422 IQTTKEQPIPVDKLDEVLK--------AEIQKKFKGKYVHFADKLSEYITQTEIKKSKKW 1267
K++P+ +++ E L+ AE + FK + + +S+ I Q +
Sbjct: 851 HPQGKDRPLNAEEMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQ------- 903
Query: 1266 QNGKAHCGNHETADLKTKESC-KICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARA 1090
K E C +C +E CLT QL F+ + RA
Sbjct: 904 ---------------KRYEKCIDLCHQIE----------CLTTEQLLQFVRRINDRYNRA 938
Query: 1089 ITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPII 910
+TEPGTAVGAIAA SIGEP TQMTLKTFHFAGVASMNITQGVPRI EIINA KTISTPII
Sbjct: 939 VTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPII 998
Query: 909 TAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVC 730
TA L + + AR+VKARIEKTTL E+ Y+E V P +L + ++ RI+LL L +
Sbjct: 999 TAELENCHSMEFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGVDMARIKLLGLHID 1058
Query: 729 MESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKG 550
+++I ++I S++ + ++VA ++ + +R +T + + L SL NVVV G
Sbjct: 1059 LDTIVFSILKSRMRVKPTQVEVVA-SQSRIVVRVEATRTSTINAELARLALSLQNVVVAG 1117
Query: 549 IPSVNRCVIHADE-KKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAA 373
+P++NR VI D+ ++ Y L +EG R V+++ GV ++T NN + LGIEAA
Sbjct: 1118 LPNINRAVIAVDDARQPPTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAA 1177
Query: 372 RSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEK 193
R+ I++EI M+ HG+ +D RH+MLLA MT RGEVLGITR+GL KM++SV LASFEK
Sbjct: 1178 RTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEK 1237
Query: 192 TMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKYDKKAVLKQNSPIFERLN 13
T DHLF+AA++ Q D I+GVSE II+G P +GTG FKL+Q+++ K V I LN
Sbjct: 1238 TADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHEDKQVPPIEPTICSSLN 1297
Query: 12 V 10
+
Sbjct: 1298 L 1298
Score = 583 bits (1504), Expect = e-165
Identities = 311/620 (50%), Positives = 406/620 (65%), Gaps = 12/620 (1%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M KEQFR + K+ V+F + ++Q A V I + LY+ + QP YG LD +
Sbjct: 1 MPKEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQ---AQRQPVPYGVLDRR 57
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MG+ +C+GHFGY DL +PVFHIG F+ TI +LQ ICK C+ ++L P
Sbjct: 58 MGISTKDAMCETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKP 117
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIA-- 3670
E +++ +++ NPN YL +KALH +++A KK + C HCG NG VKK G +LKI
Sbjct: 118 EDRQLYEKKLHNPNFSYLGKKALHVQMLAKAKKVTKCPHCGSPNGGVKKGPG-LLKILHD 176
Query: 3669 ----------FASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEG 3520
F S ++ + L T N +G++ + T PL V LF I +
Sbjct: 177 PYKGRKMDSLFTSNMN-EMLRSTQTNRDLNSTLGNYSTAEELT---PLMVLDLFEQIPQR 232
Query: 3519 DIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDV 3340
D+ +L + S + HP L++TR+ VPP CIRPSV+SEVKAGTTEDD+TMK EI+L NDV
Sbjct: 233 DVALLGMCS-HDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDV 291
Query: 3339 LKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRF 3160
+++H G + + E W+ LQ+ ALY +SE+SG+P +M PK+ R QRLKGKQGRF
Sbjct: 292 IQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRF 351
Query: 3159 RGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGS 2980
R NL GKRVDFSGRTVISPDPNL I+QVGVP+ VA LT+PE VN +NI MR+LV NG
Sbjct: 352 RCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGP 411
Query: 2979 DVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKIS 2800
+HPGANY+ ++ + KK L YG R+++A+ L+ GD +ERHL D D+VLFNRQPSLHK+S
Sbjct: 412 SMHPGANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMS 471
Query: 2799 IMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITP 2620
IM HRAKV P RTFRFNECACTPYNADFDGDEMNLHLPQT EA+AEA LM ++NL+TP
Sbjct: 472 IMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTP 531
Query: 2619 RSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXP 2440
++GE L+AA QDFITGGYLLT K+ FL + E + AA + A+ P
Sbjct: 532 KNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFL-ANEDSTMHIKLPPPALLKP 590
Query: 2439 VELWTGKQLIELIIRPDKGS 2380
LWTGKQ+ L++RP+ S
Sbjct: 591 RRLWTGKQMFSLLMRPNDDS 610
>gi|13812229|ref|NP_113360.1| RNA polymerase III largest subunit
[Guillardia theta]
gi|25288406|pir||E90098 RNA polymerase III largest subunit [imported]
- Guillardia theta nucleomorph
gi|13794541|gb|AAK39916.1| RNA polymerase III largest subunit
[Guillardia theta]
Length = 1289
Score = 642 bits (1656), Expect = 0.0
Identities = 440/1326 (33%), Positives = 685/1326 (51%), Gaps = 33/1326 (2%)
Frame = -1
Query: 3966 CVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDY-L 3790
C GH+G+ L +PV ++GF K +LQ +CK CSS+LL + ++ ++ N + +
Sbjct: 68 CQGHYGHLRLSMPVLNLGFIKTIQCILQMVCKRCSSLLLRSSKEKIHFSFLLGKNSNNKV 127
Query: 3789 HRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFASPVSVDELGKFATMFSSN 3610
+K ++ I+ CK C +C NG ++K + +AF + +S
Sbjct: 128 EKKKIYFNILEKCKSHRKCPNCEFSNGKIRK----ISNLAFLHDID-----------NSK 172
Query: 3609 QEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCI 3430
E+ + +L PL + ++FS I D+ ++ V + N L+ +P+PP I
Sbjct: 173 NEINE--------ILGPLKIFQIFSKINAEDLELIGVNDYGFRIEN-LIFFFIPIPPSII 223
Query: 3429 RPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYIN 3250
RPS+ + T EDD+T+KL I TN LK + E W LQI+C Y +
Sbjct: 224 RPSIRIDTYT-TNEDDLTIKLASIQNTNKKLKYELEQNMNYNRIKELWTFLQIECYQYFD 282
Query: 3249 SEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGV 3070
S+ +++ + QRLKGK GRFRG L GKRVDFS RTVISPDPNL + Q+G+
Sbjct: 283 SDFFQKKFNLK----FQGVFQRLKGKNGRFRGTLIGKRVDFSARTVISPDPNLFLSQIGI 338
Query: 3069 PIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKL-LKYGKRDELA 2893
PI + L+FPE +N N E++++ ++ G+D +PG ++ + NKK+ L + +
Sbjct: 339 PIIICKNLSFPEKLNFYNYERLKRCILRGNDRYPGVVSVITRD--NKKIFLNKSNKKNMM 396
Query: 2892 KNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFD 2713
++G++I+RHL ND++LFNRQPSLH++SIM+HR ++ +TFR N C C PYNADFD
Sbjct: 397 FFSKIGNSIQRHLVKNDIILFNRQPSLHRLSIMAHRIRIFKEKTFRLNHCVCKPYNADFD 456
Query: 2712 GDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPR 2533
GDEMNLH+PQ+ ++ EA L+N NN TPR+GE L+A QDF++ ++LT ++ F +
Sbjct: 457 GDEMNLHVPQSETSRTEAITLLNSYNNFYTPRNGEILIACSQDFLSYSFILTSRNIFFNK 516
Query: 2532 AEVYRFAAALIDASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAK 2353
EV LI S + P LWTGKQ+ I+ DK + LNL K
Sbjct: 517 EEV----TGLI--SGEVSDLFNNILPAILKPKILWTGKQIFSEILFFDK-NYYHLNLIKK 569
Query: 2352 NKS-------------YTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLM 2212
K+ T + +C + + II+N+++L+G L K+ LG+ +K+++F
Sbjct: 570 QKTNYQIREKFTSRQFNTCSPFVCPIEGWTIIKNNLILSGRLGKTSLGTGNKMSLFSFSR 629
Query: 2211 RDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYI 2032
+ ++++ +++ + + SN GFS I +V+PS+ + ++K Q++ SK
Sbjct: 630 NNNSASEILNSILKISILNQNWFSNYGFSFSINNVKPSKVICKKKEQII----SKAKNVH 685
Query: 2031 KELE-EGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCL--RNLSKYNAPLTMAVCGS 1861
+ L + K+ + +T E + L++++ G++C+ +N+ +A + M GS
Sbjct: 686 QSLNYKKKITNKNSLMVLDTFEEKLNIILNSVKGDLGRICVTTKNIDNNSASI-MVASGS 744
Query: 1860 KGSFINISQMIACVGQQAISGHRPPDGFEERSLP--HFERKKKTPEAKGFVANSFYSGLT 1687
KGS +N+ QM+ +GQQ IS R +GF R LP F+++ KG + NSFYSGL
Sbjct: 745 KGSQLNLVQMMLTLGQQMISAKRILNGFSYRILPSQSFKKENMLFNEKGLIENSFYSGLD 804
Query: 1686 PTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFG 1507
EFFFH+M GREGL+DTAVKTAE GY+QRRLVK LED+ D TVR S G + +F FG
Sbjct: 805 SKEFFFHSMAGREGLIDTAVKTAEIGYLQRRLVKSLEDISIMNDSTVRDSFGRIYQFTFG 864
Query: 1506 EDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVH 1327
D ++P +K S+ F L+ K+ D L + + ++
Sbjct: 865 GDNVNPENF-SKFYSINSFDFSLKLKKS-------------TDNYL---LYVFLRAHFLR 907
Query: 1326 FADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCL 1147
F D L+ I +K N K++ G E K ++ K+
Sbjct: 908 FFDSLTFSINLRNKINFEKILNIKSNFGYFEILIKKYFQTFKL----------------- 950
Query: 1146 TKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQG 967
I +PGT VG I+A S+GEP TQMTL+TFH AG S NIT G
Sbjct: 951 ------------------VIIDPGTGVGCISAQSLGEPGTQMTLQTFHSAGTGSQNITSG 992
Query: 966 VPRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDY 787
+PRI EI++ K P+I+ + R+K ++K +G + + I E++L
Sbjct: 993 IPRINEILSNSKNTKFPLISYDINFFEFNKKKSRLKFFLKKIKIGFLINSI-EIFLHRG- 1050
Query: 786 FLLVKLNSKRIRLLQLEVCMESISYAI-------------ATSKVCPQMRGCKIVAHGKT 646
F+ VK++ I+ + + I Y I +T +C + + + H
Sbjct: 1051 FVSVKIHF--IKKIYEYLDQSKIYYFIIKKFHDNTKIIKKSTVFICKKKKNVVLQFHKND 1108
Query: 645 MMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDF 466
L+ + ++V+ G ++ I+ + + + + F
Sbjct: 1109 FKI----DDFNLNFINLYNFFRIHFGDIVLTGFYESSK--INCNFLFNNL-EIKISDNRF 1161
Query: 465 RSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLAD 286
+L+ G+ RK NN + + LGIEA+R I+ EI T +HGI D RHV LLAD
Sbjct: 1162 DILLNIPGIIFRKLYCNNINSIYNFLGIEASRELIVLEITNTFKSHGIFSDNRHVYLLAD 1221
Query: 285 VMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTP 106
MT+ G ++GI R GL K+SV LLASFEKTM++LF A+ + GVS+ II G
Sbjct: 1222 YMTFNGFIIGINREGLTCNKESVFLLASFEKTMENLFNASLNHTKSKYIGVSDAIIFGNS 1281
Query: 105 MTVGTG 88
+ +GTG
Sbjct: 1282 IPIGTG 1287
>gi|31544947|gb|AAH53071.1| BC053071 protein [Mus musculus]
Length = 649
Score = 641 bits (1653), Expect = 0.0
Identities = 337/642 (52%), Positives = 426/642 (65%), Gaps = 10/642 (1%)
Frame = -1
Query: 4203 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 4024
M KEQFRE D A K+ + F E MRQ AH+ + + LY + P YG LD +
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQ-DNNHAPLLYGVLDHR 59
Query: 4023 MGVXXXXXXXXXXXXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 3844
MG DC+GH+GY DL++P FH+G+F+ I +LQ ICK C I+L+
Sbjct: 60 MGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQ 119
Query: 3843 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF- 3667
E+ + F + P L YL ++ L K+I C+K STC +CG NGTVKK +LKI
Sbjct: 120 EEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKC--GLLKIIHE 177
Query: 3666 --------ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIP 3511
P+ + L F T N+EV + + + L NPL V LF I D+P
Sbjct: 178 KYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENL-NPLVVLNLFKRIPAEDVP 236
Query: 3510 VLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKK 3331
+L++ E P+DL+LTR+ VPP+CIRPSVVS++K+GT EDD+TMKL EI+ NDV+KK
Sbjct: 237 LLLMNP-ESGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKK 295
Query: 3330 HKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGN 3151
H+ GA ++ + E W+ LQ+QCALYINSE+SG+P +M PK+ R F QRLKGKQGRFRGN
Sbjct: 296 HRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGN 355
Query: 3150 LCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVH 2971
L GKRVDFSGRTVISPDPNLRID+V VP+HVA LTFPE VN +NI +R+LV NG DVH
Sbjct: 356 LSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVH 415
Query: 2970 PGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMS 2791
PGAN++ ++ K+ LKYG R+++A+ L+ GD +ERHL D DVVLFNRQPSLHK+SIM+
Sbjct: 416 PGANFIQQRHMQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 2790 HRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 2611
H A+V P RTFRFNEC CTPYNADFDGDEMNLHLPQT EAKAEA LM K NL+TPR+G
Sbjct: 476 HLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 2610 EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKXXXXXXXXXXPVEL 2431
EPL+AAIQDF+TG YLLT KDTF RA+ + A+++ +K K PV L
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK-IKVRLPPPTILKPVTL 594
Query: 2430 WTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLE-LCSKDS 2308
WTGKQ+ +I+RP + V NL K K Y G E LC DS
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDS 636
>gi|12083527|gb|AAG48836.1| similar to Arabidopsis thaliana
DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
(JDMU1) [Oryza sativa]
Length = 1741
Score = 641 bits (1653), Expect = 0.0
Identities = 420/1219 (34%), Positives = 639/1219 (51%), Gaps = 103/1219 (8%)
Frame = -1
Query: 3387 DDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK- 3211
DD+T +L I+ N+ L++ +R+GAP+ + E + LQ A Y ++E+ G P Q
Sbjct: 218 DDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSG 277
Query: 3210 RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEI 3031
R +++ RLK K+GR RGNL GKRVDFS RTVI+PDPN+ ID++GVP +A+ LT+PE
Sbjct: 278 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPET 337
Query: 3030 VNASNIEKMRQLVINGSDVHPG---ANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIER 2860
V NIE++++LV G PG A Y++ ++ G + L+Y K+ ++L +G +ER
Sbjct: 338 VTPYNIERLKELVEYGPHPPPGKTGAKYII-REDGQRLDLRYVKKSS-DQHLELGYKVER 395
Query: 2859 HLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQT 2680
HL+D D VLFNRQPSLHK+SIM HR K+MP TFR N +PYNADFDGDEMN+H+PQ+
Sbjct: 396 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 455
Query: 2679 YEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALI 2500
+E +AE ELM V +++P+S P++ +QD + G +T +DT + +
Sbjct: 456 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWE 515
Query: 2499 DASAKKQTKXXXXXXXXXXPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELC 2320
D K +WTGKQ+ LII ++L + S +
Sbjct: 516 DFDGKVPAPAILKPR------PIWTGKQVFNLIIP----KQINLIRFSGWHSEAETRFIT 565
Query: 2319 SKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLS 2140
D+ V I LL+G L K LG+S+ ++ +++ + G DAA + + +L
Sbjct: 566 PGDTMVRIEKGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 624
Query: 2139 NRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESII 1960
GFSIGIGD + + + + + IK+ + +L+A+ G T E+ E+ +
Sbjct: 625 QNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRTTMESFENRV 684
Query: 1959 LRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDG 1780
L+ RD AG ++LS+ N MA GSKG+FINISQM ACVGQQ + G R P G
Sbjct: 685 NEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVEGKRIPFG 744
Query: 1779 FEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQ 1600
F R+LPHF + PE++GFV NS+ GLTP EFFFH MGGREGL+DTAVKT+ETGY+Q
Sbjct: 745 FTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 804
Query: 1599 RRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAK-----DGSVVDFTHVLE 1435
RRLVK +ED+ YDGTVR+S+GDVI+F++GEDG+D +E++ +F +V
Sbjct: 805 RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFR 864
Query: 1434 HAKNIQTTK---------EQPIPVDKLDEVLKAEIQKKFKGKY---VHFADKLSEYITQT 1291
+ + + K E + ++ V +AE+QK ++ A
Sbjct: 865 YELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMP 924
Query: 1290 EIKKSKKWQNGKA-----------HCGNHETADLKTKESCKICK-----NLEAYKTSLLA 1159
K W K H A K +E K+ ++EA K + L
Sbjct: 925 VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLF 984
Query: 1158 NSCLTKTQLCSFIELCYYKVAR----------------AITEPGTAVGAIAATSIGEPST 1027
+ L ++ S L Y++ + ++ PG +G +AA SIGEP+T
Sbjct: 985 FNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1044
Query: 1026 QMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYD--ESLARRVKAR 853
QMTL TFH+AGV++ N+T GVPR++EIIN K I TP ++ L + + LA+ V+
Sbjct: 1045 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEVNKKKELAKNVQCA 1104
Query: 852 IEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIR------------------LLQLEVCM 727
+E TTL + E Y PD +++ +++ ++ LL++E+
Sbjct: 1105 LEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNR 1164
Query: 726 E-----SISYAIATSKVCPQM---RGCKIVAHGKTMMAIRPPSTSKLSKTMTMQ------ 589
E +S A K+ + C + +R T+ ++ +Q
Sbjct: 1165 EMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKGEIQDEYGED 1224
Query: 588 ------ILKYSLANVVVKGIPSVNRCVIHADE----------KKGDFYSLLVEGTDFRSV 457
I L + ++GIP +N+ I K + L EG + +V
Sbjct: 1225 DVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFKTEKGWMLDTEGVNLLAV 1284
Query: 456 LSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMT 277
+ VD +T N+ + V +VLGIEA R +++E+ + G ++ RH+ +L D MT
Sbjct: 1285 MCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDTMT 1344
Query: 276 YRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTV 97
YRG ++ ITR+G+ + L+ SFE+T+D L +AA +++ D + GVSE I++G +
Sbjct: 1345 YRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPI 1404
Query: 96 GTGTFKLMQKYDKKAVLKQ 40
GTG L Y +LKQ
Sbjct: 1405 GTGGCDL---YLNDQMLKQ 1420
Score = 70.9 bits (172), Expect = 3e-10
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Frame = -1
Query: 4164 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVXXXXXXXXXX 3985
KV V+F + +RQ + V I + + E +GK +P G DP+MG
Sbjct: 15 KVEAVQFGVLSPDEIRQMSVVHIEHAETME--KGKPKPG--GLSDPRMGTIDRKIKCETC 70
Query: 3984 XXXXTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRV-FSRQVMN 3808
+C GHFG+ +L P+FHIGF K + +++C+C NCS IL + + + ++ N
Sbjct: 71 MAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQALKIRN 130
Query: 3807 PNLDYLHRKALHKRIVAACKKGSTCS 3730
P K KRI ACK C+
Sbjct: 131 P-------KNKLKRIYDACKNRKICA 149