Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= C48B4_14
         (482 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17552666|ref|NP_499122.1| putative protein (3K687) [Caenorhab...   240   9e-63
gi|17552668|ref|NP_499121.1| putative protein (20.3 kD) (3K687) ...   234   4e-61
gi|39590783|emb|CAE65156.1| Hypothetical protein CBG10024 [Caeno...   124   6e-28
gi|39590784|emb|CAE65157.1| Hypothetical protein CBG10025 [Caeno...    53   2e-06
gi|630667|pir||S40973 hypothetical protein F58A4.1 - Caenorhabdi...    53   2e-06
gi|17553732|ref|NP_499123.1| putative secreted or extracellular ...    52   5e-06
gi|23613760|ref|NP_704781.1| hypothetical protein [Plasmodium fa...    36   0.27
gi|9626618|ref|NP_040907.1| putative E4 ORF~no ATG [Human papill...    35   0.46
gi|23510201|ref|NP_702867.1| erythrocyte membrane-associated ant...    35   0.78
gi|9626602|ref|NP_040893.1| putative E4 ORF [Human papillomaviru...    35   0.78
gi|23613415|ref|NP_703259.1| asparagine-rich antigen Pfa35-2 [Pl...    34   1.0
gi|49237340|ref|YP_031621.1| unknown [Frog virus 3] >gnl|BL_ORD_...    34   1.0
gi|1754949|gb|AAB39460.1| envelope glycoprotein, v1-v5 region          33   1.7
gi|323103|pir||C45600 asparagine-rich blood stage antigen (clone...    33   1.7
gi|23619456|ref|NP_705418.1| hypothetical protein [Plasmodium fa...    33   3.0
gi|42403585|ref|NP_001441.3| four and a half LIM domains 2 isofo...    32   3.9
gi|42403575|ref|NP_963849.1| four and a half LIM domains 2 isofo...    32   3.9
gi|2497681|sp|Q14192|SLI3_HUMAN Skeletal muscle LIM-protein 3 (S...    32   3.9
gi|30584155|gb|AAP36326.1| Homo sapiens four and a half LIM doma...    32   3.9
gi|42403570|ref|NP_963851.1| four and a half LIM domains 2 isofo...    32   3.9
gi|47214507|emb|CAG00931.1| unnamed protein product [Tetraodon n...    32   5.1
gi|47216011|emb|CAF96259.1| unnamed protein product [Tetraodon n...    32   5.1
gi|27379017|ref|NP_770546.1| biopolymer transport protein [Brady...    32   5.1
gi|21911443|ref|NP_665671.1| coat protein [Hollyhock leaf crumpl...    32   6.6
gi|4102698|gb|AAD01546.1| coat protein [Hollyhock leaf crumple v...    32   6.6
gi|26248804|ref|NP_754844.1| Putative PTS system IIBC component ...    32   6.6
gi|15802960|ref|NP_288990.1| putative PTS enzyme II [Escherichia...    32   6.6
gi|419402|pir||B46315 E4 protein - human papillomavirus type 4 >...    32   6.6
gi|23479614|gb|EAA16395.1| hypothetical protein [Plasmodium yoel...    31   8.7
gi|39584975|emb|CAE64399.1| Hypothetical protein CBG09090 [Caeno...    31   8.7
gi|24113771|ref|NP_708281.1| putative PTS enzyme II [Shigella fl...    31   8.7
gi|16130354|ref|NP_416924.1| putative PTS enzyme IIBC component;...    31   8.7


>gi|17552666|ref|NP_499122.1| putative protein (3K687)
           [Caenorhabditis elegans]
 gi|25395927|pir||C88560 protein C48B4.12a [imported] -
           Caenorhabditis elegans
 gi|3875027|emb|CAA82386.1| Hypothetical protein C48B4.12a
           [Caenorhabditis elegans]
 gi|3877832|emb|CAA80173.1| Hypothetical protein C48B4.12a
           [Caenorhabditis elegans]
          Length = 190

 Score =  240 bits (612), Expect = 9e-63
 Identities = 117/160 (73%), Positives = 117/160 (73%)
 Frame = +1

Query: 1   MRHLILLLVTISMVSAMGYIGGNRGSPKKPTGDWPSRFPQHPAGFSYKCKNRQFETSGPS 180
           MRHLILLLVTISMVSAMGYIGGNRGSPKKPTGDWPSRFPQHPAGFSYKCKNRQFETSGPS
Sbjct: 1   MRHLILLLVTISMVSAMGYIGGNRGSPKKPTGDWPSRFPQHPAGFSYKCKNRQFETSGPS 60

Query: 181 QNQPPIGNDGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWIRS 360
           QNQPPIGNDGEE                                           FWIRS
Sbjct: 61  QNQPPIGNDGEETPKPTPKPTTTTTVKPTSPTTLKMTSPTTTTKKPAPAAPTATTFWIRS 120

Query: 361 PTPPNTPAPVVKGGAAYTLGHPQFATVKPVSVFAPDAALH 480
           PTPPNTPAPVVKGGAAYTLGHPQFATVKPVSVFAPDAALH
Sbjct: 121 PTPPNTPAPVVKGGAAYTLGHPQFATVKPVSVFAPDAALH 160




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