Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= C49H3_5
(2391 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|25149826|ref|NP_741453.1| transcription complex (90.2 kD) (4I... 1239 0.0
gi|7497693|pir||T34180 hypothetical protein C49H3.5 - Caenorhabd... 1219 0.0
gi|39595039|emb|CAE70907.1| Hypothetical protein CBG17704 [Caeno... 934 0.0
gi|25149830|ref|NP_741454.1| transcription complex (4I679) [Caen... 891 0.0
gi|34855140|ref|XP_231603.2| similar to potential transcriptiona... 308 3e-82
gi|26389853|dbj|BAC25801.1| unnamed protein product [Mus musculus] 308 5e-82
gi|46395844|sp|Q8BT14|CNO4_MOUSE CCR4-NOT transcription complex ... 308 5e-82
gi|31560446|ref|NP_058573.2| CCR4-NOT transcription complex, sub... 308 5e-82
gi|37590150|gb|AAH58778.1| Cnot4 protein [Mus musculus] 307 7e-82
gi|46395635|sp|O95628|CNO4_HUMAN CCR4-NOT transcription complex ... 305 3e-81
gi|9367873|emb|CAB97536.1| NOT4, potential transcriptional repre... 305 3e-81
gi|23272569|gb|AAH35590.1| CNOT4 protein [Homo sapiens] 304 6e-81
gi|50728558|ref|XP_416177.1| PREDICTED: similar to Cnot4 protein... 303 2e-80
gi|6856207|gb|AAF29829.1| Not4-Np [Homo sapiens] 301 5e-80
gi|47224425|emb|CAG08675.1| unnamed protein product [Tetraodon n... 298 4e-79
gi|4097900|gb|AAD00180.1| potential transcriptional repressor NO... 294 6e-78
gi|7019467|ref|NP_037448.1| CCR4-NOT transcription complex, subu... 294 6e-78
gi|28278582|gb|AAH44088.1| Cnot4-prov protein [Xenopus laevis] 294 8e-78
gi|24583396|ref|NP_723578.1| CG31716-PA [Drosophila melanogaster... 293 1e-77
gi|24583406|ref|NP_723583.1| CG31716-PG [Drosophila melanogaster... 293 1e-77
gi|41054904|ref|NP_957463.1| similar to CCR4-NOT transcription c... 293 1e-77
gi|48101919|ref|XP_392724.1| similar to CG31716-PG [Apis mellifera] 291 4e-77
gi|31233716|ref|XP_318936.1| ENSANGP00000015688 [Anopheles gambi... 235 4e-60
gi|49072044|ref|XP_400311.1| hypothetical protein UM02696.1 [Ust... 217 9e-55
gi|19113990|ref|NP_593078.1| putative transcriptional repressor ... 213 1e-53
gi|50554963|ref|XP_504890.1| hypothetical protein [Yarrowia lipo... 186 2e-45
gi|45187809|ref|NP_984032.1| ADL064Wp [Eremothecium gossypii] >g... 185 5e-45
gi|8885568|dbj|BAA97498.1| general negative transcription regula... 184 6e-45
gi|15231193|ref|NP_190149.1| RNA recognition motif (RRM)-contain... 184 8e-45
gi|50425277|ref|XP_461230.1| unnamed protein product [Debaryomyc... 180 1e-43
gi|28828505|gb|AAO51113.1| similar to Dictyostelium discoideum (... 179 3e-43
gi|6320912|ref|NP_010991.1| Component of the CCR4-NOT transcript... 178 6e-43
gi|28373260|gb|AAF66693.2| NOT4p [Candida albicans] 176 2e-42
gi|50290813|ref|XP_447839.1| unnamed protein product [Candida gl... 172 3e-41
gi|50305199|ref|XP_452558.1| unnamed protein product [Kluyveromy... 171 6e-41
gi|24741192|emb|CAD56154.1| CCr4/NOT complex/transcription facto... 171 6e-41
gi|15226889|ref|NP_180420.1| RNA recognition motif (RRM)-contain... 167 1e-39
gi|46134187|ref|XP_389409.1| hypothetical protein FG09233.1 [Gib... 166 2e-39
gi|46434693|gb|EAK94095.1| hypothetical protein CaO19.2379 [Cand... 162 3e-38
gi|46434745|gb|EAK94146.1| hypothetical protein CaO19.9915 [Cand... 162 3e-38
gi|50259942|gb|EAL22608.1| hypothetical protein CNBB2400 [Crypto... 159 3e-37
gi|49087976|ref|XP_405864.1| hypothetical protein AN1727.2 [Aspe... 152 5e-35
gi|23479809|gb|EAA16539.1| putative protein potential transcript... 151 6e-35
gi|15238634|ref|NP_200825.1| RNA recognition motif (RRM)-contain... 145 4e-33
gi|38109877|gb|EAA55681.1| hypothetical protein MG01332.4 [Magna... 141 8e-32
gi|32405558|ref|XP_323392.1| hypothetical protein [Neurospora cr... 132 3e-29
gi|46229641|gb|EAK90459.1| Not4hp/Mot2p, RING finger+RRM domains... 130 1e-28
gi|34903838|ref|NP_913266.1| unnamed protein product [Oryza sati... 130 2e-28
gi|12843900|dbj|BAB26155.1| unnamed protein product [Mus musculus] 129 3e-28
gi|29249961|gb|EAA41463.1| GLP_422_72387_71359 [Giardia lamblia ... 126 2e-27
gi|13786788|pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of... 125 6e-27
gi|23509035|ref|NP_701703.1| hypothetical protein [Plasmodium fa... 117 1e-24
gi|31248070|ref|XP_318937.1| ENSANGP00000023436 [Anopheles gambi... 115 4e-24
gi|49259383|pdb|1UR6|B Chain B, Nmr Based Structural Model Of Th... 114 1e-23
gi|19074966|ref|NP_586472.1| RING ZINC FINGER TRANSCRIPTION NEGA... 105 5e-21
gi|15228327|ref|NP_190390.1| expressed protein [Arabidopsis thal... 66 3e-09
gi|19347722|gb|AAL86287.1| unknown protein [Arabidopsis thaliana] 64 2e-08
gi|15241998|ref|NP_201096.1| expressed protein [Arabidopsis thal... 64 2e-08
gi|22760262|dbj|BAC11125.1| unnamed protein product [Homo sapiens] 62 8e-08
gi|15221416|ref|NP_177625.1| expressed protein [Arabidopsis thal... 60 2e-07
gi|38347056|emb|CAD41040.2| OSJNBa0060P14.3 [Oryza sativa (japon... 55 6e-06
gi|38567724|emb|CAE76013.1| B1358B12.22 [Oryza sativa (japonica ... 55 6e-06
gi|48696758|ref|YP_024582.1| ORF38 [Ostreid herpesvirus 1] >gnl|... 46 0.005
gi|48120559|ref|XP_393227.1| similar to CG5580-PA [Apis mellifera] 46 0.005
gi|31233724|ref|XP_318938.1| ENSANGP00000015051 [Anopheles gambi... 46 0.005
gi|40253470|dbj|BAD05420.1| putative transformer-SR ribonucleopr... 43 0.040
gi|27372782|gb|AAO03579.1| cellulose synthase-like protein D4 [P... 42 0.052
gi|13925884|gb|AAK49455.1| cellulose synthase D-like protein [Ni... 42 0.052
gi|15237873|ref|NP_197193.1| cellulose synthase family protein [... 42 0.068
gi|15217853|ref|NP_171773.1| cellulose synthase family protein [... 42 0.068
gi|34852120|ref|XP_227942.2| similar to hypothetical protein MGC... 42 0.089
gi|25013144|gb|AAN71685.1| SD19050p [Drosophila melanogaster] 40 0.20
gi|24659216|ref|NP_648034.1| CG7376-PA [Drosophila melanogaster]... 40 0.20
gi|16197925|gb|AAL13727.1| LD03886p [Drosophila melanogaster] 40 0.20
gi|15228448|ref|NP_186955.1| cellulose synthase family protein (... 40 0.26
gi|34897878|ref|NP_910285.1| Similar to Arabidopsis thaliana DNA... 40 0.34
gi|41053491|ref|NP_956600.1| hypothetical protein MGC56424 [Dani... 40 0.34
gi|15242960|ref|NP_197667.1| SNF2 domain-containing protein / he... 39 0.44
gi|15221825|ref|NP_173298.1| glycine-rich RNA-binding protein, p... 39 0.44
gi|21553495|gb|AAM62588.1| glycine-rich RNA-binding protein, put... 39 0.44
gi|15233733|ref|NP_195532.1| cellulose synthase family protein [... 39 0.44
gi|28973666|gb|AAO64152.1| unknown protein [Arabidopsis thaliana] 39 0.44
gi|38174276|gb|AAH60884.1| Topoisomerase I binding, arginine/ser... 39 0.75
gi|15242540|ref|NP_196549.1| cellulose synthase, catalytic subun... 39 0.75
gi|6677815|ref|NP_033125.1| tripartite motif protein 30; regulat... 38 0.98
gi|12407361|gb|AAG53469.1| tripartite motif protein TRIM30 isofo... 38 0.98
gi|20141865|sp|P15533|TM30_MOUSE Tripartite motif protein 30 (Do... 38 0.98
gi|13529425|gb|AAH05447.1| Trim30 protein [Mus musculus] 38 0.98
gi|12407363|gb|AAG53470.1| tripartite motif protein [Mus musculus] 38 0.98
gi|37537158|ref|NP_922882.1| putative cellulose synthase [Oryza ... 38 0.98
gi|38346175|emb|CAE04093.2| OSJNBa0096F01.2 [Oryza sativa (japon... 38 0.98
gi|91257|pir||A30891 regulatory protein rpt-1 - mouse 38 0.98
gi|34880773|ref|XP_341138.1| similar to constitutive photomorpho... 38 1.3
gi|50771193|ref|XP_427111.1| PREDICTED: similar to p53-binding p... 38 1.3
gi|49083936|ref|XP_404208.1| hypothetical protein AN0071.2 [Aspe... 38 1.3
gi|49388292|dbj|BAD25407.1| putative DNA repair protein rad8 [Or... 37 1.7
gi|50233824|ref|NP_001001740.1| constitutive photomorphogenic pr... 37 1.7
gi|7489207|pir||T03986 transformer-SR ribonucleoprotein - common... 37 1.7
gi|23612609|ref|NP_704170.1| hypothetical protein [Plasmodium fa... 37 1.7
gi|46431336|gb|EAK90918.1| hypothetical protein CaO19.1133 [Cand... 37 1.7
gi|15219486|ref|NP_177494.1| RNA recognition motif (RRM)-contain... 37 1.7
gi|46431330|gb|EAK90913.1| hypothetical protein CaO19.8726 [Cand... 37 1.7
gi|34872552|ref|XP_341086.1| similar to FLN29 gene product [Ratt... 37 2.2
gi|15239896|ref|NP_199166.1| SNF2 domain-containing protein / he... 37 2.2
gi|26986577|ref|NP_758479.1| FLN29 gene product [Mus musculus] >... 37 2.2
gi|19115091|ref|NP_594179.1| C3HC4 type (RING finger) protein [S... 37 2.2
gi|26024211|ref|NP_036061.1| constitutive photomorphogenic prote... 37 2.2
gi|29248897|gb|EAA40420.1| GLP_43_29864_28110 [Giardia lamblia A... 37 2.9
gi|26336597|dbj|BAC31981.1| unnamed protein product [Mus musculus] 37 2.9
gi|21359963|ref|NP_071902.2| constitutive photomorphogenic prote... 37 2.9
gi|15227094|ref|NP_179768.1| cellulose synthase, catalytic subun... 37 2.9
gi|15919933|dbj|BAB69457.1| p53-binding protein-3 [Mus musculus] 37 2.9
gi|26251937|gb|AAH40797.1| Topoisomerase 1-binding RING finger [... 37 2.9
gi|29336062|ref|NP_598858.2| topoisomerase 1-binding RING finger... 37 2.9
gi|4566495|gb|AAD23379.1| topoisomerase I-binding RS protein [Ho... 37 2.9
gi|40805104|ref|NP_005793.2| topoisomerase I binding, arginine/s... 37 2.9
gi|38423969|dbj|BAD01697.1| putative cellulose synthase, catalyt... 37 2.9
gi|34419230|tpg|DAA01756.1| TPA: cellulose synthase-like D3 [Ory... 37 2.9
gi|34867140|ref|XP_342820.1| similar to p53-binding protein-3 [R... 37 2.9
gi|8778550|gb|AAF79558.1| F22G5.31 [Arabidopsis thaliana] 37 2.9
gi|9664148|dbj|BAB03715.1| RING-finger protein [Homo sapiens] 37 2.9
gi|47078494|gb|AAT09895.1| cellulose synthase [Populus tremula x... 37 2.9
gi|27370731|gb|AAH37141.1| Topors protein [Mus musculus] 37 2.9
gi|25453527|pir||T52028 cellulose synthase [imported] - Arabidop... 36 3.7
gi|50406858|ref|XP_456668.1| unnamed protein product [Debaryomyc... 36 3.7
gi|45595611|gb|AAH67187.1| Rbm4l protein [Danio rerio] 36 3.7
gi|25145461|ref|NP_740943.1| GenBank Accession Number in like (1... 36 3.7
gi|41054431|ref|NP_955971.1| RNA binding motif protein 4 [Danio ... 36 3.7
gi|15238231|ref|NP_201279.1| cellulose synthase, catalytic subun... 36 3.7
gi|37725363|gb|AAO25581.1| cellulose synthase [Populus tremuloides] 36 4.9
gi|47078500|gb|AAT09898.1| cellulose synthase [Populus tremula x... 36 4.9
gi|30681347|ref|NP_850554.1| no apical meristem (NAM) family pro... 36 4.9
gi|45935136|gb|AAS79594.1| putative DNA repair protein [Ipomoea ... 36 4.9
gi|32416406|ref|XP_328681.1| hypothetical protein [Neurospora cr... 36 4.9
gi|14719329|gb|AAK73147.1| putative RING-H2 finger protein [Oryz... 36 4.9
gi|50085145|ref|YP_046655.1| hypothetical protein ACIAD2010 [Aci... 36 4.9
gi|49615363|gb|AAT66940.1| CesA1 [Acacia mangium] 36 4.9
gi|50757584|ref|XP_425348.1| PREDICTED: similar to hypothetical ... 36 4.9
gi|34853284|ref|XP_345328.1| similar to hypothetical protein [Ra... 35 6.4
gi|48696730|ref|YP_024554.1| ORF9 [Ostreid herpesvirus 1] >gnl|B... 35 6.4
gi|39591095|emb|CAE58875.1| Hypothetical protein CBG02108 [Caeno... 35 6.4
gi|30680096|ref|NP_849605.1| transformer serine/arginine-rich ri... 35 6.4
gi|15292733|gb|AAK92735.1| putative transformer-SR ribonucleopro... 35 6.4
gi|12620209|gb|AAG60619.1| adenylate cyclase [Cryptococcus neofo... 35 6.4
gi|42561780|ref|NP_563787.2| transformer serine/arginine-rich ri... 35 6.4
gi|15235042|ref|NP_195645.1| cellulose synthase, catalytic subun... 35 6.4
gi|15238454|ref|NP_196136.1| cellulose synthase, catalytic subun... 35 6.4
gi|25453526|pir||T52054 cellulose synthase (EC 2.4.1.-) catalyti... 35 6.4
gi|47059206|ref|NP_079883.3| RIKEN cDNA 2500002L14; EST C77350 [... 35 8.3
gi|48479018|gb|AAT44833.1| breast cancer type 1 [Macaca mulatta] 35 8.3
gi|19703779|ref|NP_603341.1| Phosphoadenosine phosphosulfate red... 35 8.3
gi|12858799|dbj|BAB31462.1| unnamed protein product [Mus musculus] 35 8.3
gi|47578103|ref|NP_689763.2| SH3 domain containing ring finger 2... 35 8.3
gi|18676781|dbj|BAB85025.1| unnamed protein product [Homo sapiens] 35 8.3
gi|15239807|ref|NP_199134.1| zinc finger (C3HC4-type RING finger... 35 8.3
gi|15224720|ref|NP_180110.1| zinc finger protein-related [Arabid... 35 8.3
gi|7661690|ref|NP_056418.1| coiled-coil domain containing 9 [Hom... 35 8.3
gi|23509871|ref|NP_702538.1| hypothetical protein [Plasmodium fa... 35 8.3
>gi|25149826|ref|NP_741453.1| transcription complex (90.2 kD) (4I679)
[Caenorhabditis elegans]
gi|14573964|gb|AAF99894.2| Not-like (yeast ccr4/not complex
component) protein 4, isoform a [Caenorhabditis elegans]
Length = 796
Score = 1239 bits (3205), Expect = 0.0
Identities = 625/796 (78%), Positives = 625/796 (78%)
Frame = +1
Query: 1 MSTCSDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP 180
MSTCSDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP
Sbjct: 1 MSTCSDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP 60
Query: 181 EDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVA 360
EDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVA
Sbjct: 61 EDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVA 120
Query: 361 DPEILKKNEYFGRYGKIQKIVTXXXXXXXXXXXXXXXXXYVTYKRVDDALRAIQGVHNSM 540
DPEILKKNEYFGRYGKIQKIVT YVTYKRVDDALRAIQGVHNSM
Sbjct: 121 DPEILKKNEYFGRYGKIQKIVTSATPSLPAPHLPPSHTAYVTYKRVDDALRAIQGVHNSM 180
Query: 541 LDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHTEYEK 720
LDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHTEYEK
Sbjct: 181 LDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHTEYEK 240
Query: 721 RLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMCXXXX 900
RLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMC
Sbjct: 241 RLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMCADDP 300
Query: 901 XXXXXXXXXXXXXXXXXAPSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDPE 1080
APSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDPE
Sbjct: 301 DDDDADSTNTSNSIDDPAPSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDPE 360
Query: 1081 GNENEFEEDIHRNDVSDLMSKLDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEA 1260
GNENEFEEDIHRNDVSDLMSKLDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEA
Sbjct: 361 GNENEFEEDIHRNDVSDLMSKLDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEA 420
Query: 1261 LLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSSTPSFRREASPPPGLARFNS 1440
LLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSSTPSFRREASPPPGLARFNS
Sbjct: 421 LLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSSTPSFRREASPPPGLARFNS 480
Query: 1441 DDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLPEXXXXXXXXXX 1620
DDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLPE
Sbjct: 481 DDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLPEQRQSTQQHPQ 540
Query: 1621 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMNRQQDYMYSRLMXXXXXXXX 1800
ADMNRQQDYMYSRLM
Sbjct: 541 HLQSSHQQHPLQQNQDQHHSFLHQLHAQQQHQQQQFAADMNRQQDYMYSRLMSQQQQQSQ 600
Query: 1801 XXXXFDSTPGFSHPFGSMXXXXXXXXXXXXXXXXXXXXXXXXDLFNRXXXXXXXXXXXXX 1980
FDSTPGFSHPFGSM DLFNR
Sbjct: 601 QQRQFDSTPGFSHPFGSMQQQQQSSQQQQHQSQSSQSSSLLQDLFNRQQQQHQAQQQAQQ 660
Query: 1981 XXXXXMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSSTTQQAPPHMTXXXXXXXX 2160
MYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSSTTQQAPPHMT
Sbjct: 661 HQQQQMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSSTTQQAPPHMTQQSQQQQQ 720
Query: 2161 XXXXXMGLFGMGGXXXXXXXXXXXXXXXXXXXFKALLPNVNVRFMDDNSMSRWSHENSLR 2340
MGLFGMGG FKALLPNVNVRFMDDNSMSRWSHENSLR
Sbjct: 721 QQQSSMGLFGMGGHQSMMQDHQSQQPQSAQDAFKALLPNVNVRFMDDNSMSRWSHENSLR 780
Query: 2341 SSAVPPPPGFSSVMNR 2388
SSAVPPPPGFSSVMNR
Sbjct: 781 SSAVPPPPGFSSVMNR 796
>gi|7497693|pir||T34180 hypothetical protein C49H3.5 - Caenorhabditis
elegans
Length = 812
Score = 1219 bits (3153), Expect = 0.0
Identities = 623/814 (76%), Positives = 623/814 (76%), Gaps = 18/814 (2%)
Frame = +1
Query: 1 MSTCSDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP 180
MSTCSDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP
Sbjct: 1 MSTCSDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP 60
Query: 181 EDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVA 360
EDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVA
Sbjct: 61 EDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVA 120
Query: 361 DPEILKKNEYFGRYGKIQKIVTXXXXXXXXXXXXXXXXXYVTYKRVDDALRAIQGVHNSM 540
DPEILKKNEYFGRYGKIQKIVT YVTYKRVDDALRAIQGVHNSM
Sbjct: 121 DPEILKKNEYFGRYGKIQKIVTSATPSLPAPHLPPSHTAYVTYKRVDDALRAIQGVHNSM 180
Query: 541 LDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHTEYEK 720
LDGRLVKASLGTTKYCSSFLNSRKCFKP ECMYLHENAEAEISFTKDDMHLGKHTEYEK
Sbjct: 181 LDGRLVKASLGTTKYCSSFLNSRKCFKP--ECMYLHENAEAEISFTKDDMHLGKHTEYEK 238
Query: 721 RLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMCXXXX 900
RLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMC
Sbjct: 239 RLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMCADDP 298
Query: 901 XXXXXXXXXXXXXXXXXAPSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDPE 1080
APSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDPE
Sbjct: 299 DDDDADSTNTSNSIDDPAPSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDPE 358
Query: 1081 GNENEFEEDIH------------------RNDVSDLMSKLDVNDDRLARTSFSENDYLGI 1206
GNENEFEEDIH RNDVSDLMSKLDVNDDRLARTSFSENDYLGI
Sbjct: 359 GNENEFEEDIHRYQFSEISFIYQQKIELFRNDVSDLMSKLDVNDDRLARTSFSENDYLGI 418
Query: 1207 PAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSST 1386
PAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSST
Sbjct: 419 PAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSST 478
Query: 1387 PSFRREASPPPGLARFNSDDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLK 1566
PSFRREASPPPGLARFNSDDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLK
Sbjct: 479 PSFRREASPPPGLARFNSDDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLK 538
Query: 1567 QLFGQLPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMNR 1746
QLFGQLPE ADMNR
Sbjct: 539 QLFGQLPEQRQSTQQHPQHLQSSHQQHPLQQNQDQHHSFLHQLHAQQQHQQQQFAADMNR 598
Query: 1747 QQDYMYSRLMXXXXXXXXXXXXFDSTPGFSHPFGSMXXXXXXXXXXXXXXXXXXXXXXXX 1926
QQDYMYSRLM FDSTPGFSHPFGSM
Sbjct: 599 QQDYMYSRLMSQQQQQSQQQRQFDSTPGFSHPFGSMQQQQQSSQQQQHQSQSSQSSSLLQ 658
Query: 1927 DLFNRXXXXXXXXXXXXXXXXXXMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSS 2106
DLFNR MYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSS
Sbjct: 659 DLFNRQQQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSS 718
Query: 2107 TTQQAPPHMTXXXXXXXXXXXXXMGLFGMGGXXXXXXXXXXXXXXXXXXXFKALLPNVNV 2286
TTQQAPPHMT MGLFGMGG FKALLPNVNV
Sbjct: 719 TTQQAPPHMTQQSQQQQQQQQSSMGLFGMGGHQSMMQDHQSQQPQSAQDAFKALLPNVNV 778
Query: 2287 RFMDDNSMSRWSHENSLRSSAVPPPPGFSSVMNR 2388
RFMDDNSMSRWSHENSLRSSAVPPPPGFSSVMNR
Sbjct: 779 RFMDDNSMSRWSHENSLRSSAVPPPPGFSSVMNR 812
>gi|39595039|emb|CAE70907.1| Hypothetical protein CBG17704
[Caenorhabditis briggsae]
Length = 776
Score = 934 bits (2414), Expect = 0.0
Identities = 506/806 (62%), Positives = 553/806 (67%), Gaps = 10/806 (1%)
Frame = +1
Query: 1 MSTCSDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP 180
MSTCSDE DKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP
Sbjct: 1 MSTCSDEMSDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP 60
Query: 181 EDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVA 360
EDPVNFKPMT+DDVRKHKDEQR KKQAEK KLSDARQ+LCNYRVLQKNLVYVVGLSPRV+
Sbjct: 61 EDPVNFKPMTSDDVRKHKDEQRQKKQAEKTKLSDARQHLCNYRVLQKNLVYVVGLSPRVS 120
Query: 361 DPEILKKNEYFGRYGKIQKIVTXXXXXXXXXXXXXXXXXYVTYKRVDDALRAIQGVHNSM 540
DPEILKKNEYFGRYGKIQKIVT YVTYKRVDDALRAI GVHNSM
Sbjct: 121 DPEILKKNEYFGRYGKIQKIVTSEKASLPAPHLPPSHTAYVTYKRVDDALRAIIGVHNSM 180
Query: 541 LDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHTEYEK 720
LDGRLVKASLGTTKYCSSFL SRKCFKPVGECMYLHENAE EISFTK+DMHLGKHTEYEK
Sbjct: 181 LDGRLVKASLGTTKYCSSFLTSRKCFKPVGECMYLHENAEPEISFTKEDMHLGKHTEYEK 240
Query: 721 RLIESMNSRPPPPQSTLASQLDKILAP---TSNSPRRYLEDDSDTVDDVERTGSAIHMCX 891
RLI++++S+ PPPQS+LASQLDKILAP T +SP R + + DVERTGSA H
Sbjct: 241 RLIDALSSKAPPPQSSLASQLDKILAPAVNTHSSPVRRPHSEIPSA-DVERTGSATHN-S 298
Query: 892 XXXXXXXXXXXXXXXXXXXXAPSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPT 1071
APSNPADET++++RSN TARERQWSERDE SVAPSNTPPT
Sbjct: 299 TEELDDDRDSTNTSNSIDDPAPSNPADETISNKRSNATARERQWSERDEASVAPSNTPPT 358
Query: 1072 DPEGNENEFEEDIHRNDVSDLMSKLDVNDDRLARTSFSENDYL--GIPAPAKHQEAPAPL 1245
DPEGNENEFEEDI+R DV+DL+S+LDVN+DRL RTS SE+DYL GIPAPA HQEAPAPL
Sbjct: 359 DPEGNENEFEEDINRGDVNDLISRLDVNEDRLDRTSLSEHDYLHSGIPAPAVHQEAPAPL 418
Query: 1246 MQWEALLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTS----STPSFRREASP 1413
MQW ALLG SS T ++P SLFPTF ++S FNSQSLFGT TS +T SFRRE SP
Sbjct: 419 MQWGALLGFSS---ADTAIDPPSLFPTFNVES-FNSQSLFGTQTSNTNTNTNSFRREPSP 474
Query: 1414 PPGLARFNSDDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLPEX 1593
PPGL +F+SDDDLGFDPFTESSKGL+ALL+EEQEQ+PP + N T D+L+QLFGQLPE
Sbjct: 475 PPGLGKFSSDDDLGFDPFTESSKGLTALLREEQEQVPPRHQPGN-TNDLLRQLFGQLPEQ 533
Query: 1594 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMNRQQDYMYSRL 1773
ADM+RQQD +YSR+
Sbjct: 534 RQPTQQFQQNYHQQQQHHHQQQQQQQKNSLLHQLHAQQQHQQQQMAADMHRQQDLLYSRM 593
Query: 1774 MXXXXXXXXXXXXFDSTPGFSHPFGSMXXXXXXXXXXXXXXXXXXXXXXXXDLFNRXXXX 1953
+D + FS PFG+M +LFN+
Sbjct: 594 Q-----QQHQQRQYDQSLNFSSPFGNM-----QHHSSQQQQQQPQSANLLHELFNQQQHH 643
Query: 1954 XXXXXXXXXXXXXXMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSSTTQQAPPHM 2133
MYAG+NSYMYNDM+ PRVPFGMAPPPGLG PSTNR P M
Sbjct: 644 QQQQQQQQQAQQQQMYAGLNSYMYNDMMRPRVPFGMAPPPGLGAPSTNR--------PQM 695
Query: 2134 TXXXXXXXXXXXXXMGLFGMGGXXXXXXXXXXXXXXXXXXXFKALLPNVNVRFMDDNSMS 2313
MGLFGMG FKALLPNVNVRFMD+ S
Sbjct: 696 QQQPQQSHISQQQSMGLFGMGN--NMMPDQSSQQGREAQDAFKALLPNVNVRFMDE---S 750
Query: 2314 RWSHENSLRSS-AVPPPPGFSSVMNR 2388
RWS ENSLRSS VPPPPGFSSVMNR
Sbjct: 751 RWSQENSLRSSTVVPPPPGFSSVMNR 776
>gi|25149830|ref|NP_741454.1| transcription complex (4I679)
[Caenorhabditis elegans]
gi|20198797|gb|AAM15564.1| Not-like (yeast ccr4/not complex
component) protein 4, isoform b [Caenorhabditis elegans]
Length = 615
Score = 891 bits (2303), Expect = 0.0
Identities = 461/617 (74%), Positives = 461/617 (74%)
Frame = +1
Query: 538 MLDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHTEYE 717
MLDGRLVKASLGTTKYCSSFLNSRKCFKP ECMYLHENAEAEISFTKDDMHLGKHTEYE
Sbjct: 1 MLDGRLVKASLGTTKYCSSFLNSRKCFKP--ECMYLHENAEAEISFTKDDMHLGKHTEYE 58
Query: 718 KRLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMCXXX 897
KRLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMC
Sbjct: 59 KRLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMCADD 118
Query: 898 XXXXXXXXXXXXXXXXXXAPSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDP 1077
APSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDP
Sbjct: 119 PDDDDADSTNTSNSIDDPAPSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDP 178
Query: 1078 EGNENEFEEDIHRNDVSDLMSKLDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWE 1257
EGNENEFEEDIHRNDVSDLMSKLDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWE
Sbjct: 179 EGNENEFEEDIHRNDVSDLMSKLDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWE 238
Query: 1258 ALLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSSTPSFRREASPPPGLARFN 1437
ALLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSSTPSFRREASPPPGLARFN
Sbjct: 239 ALLGLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSSTPSFRREASPPPGLARFN 298
Query: 1438 SDDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLPEXXXXXXXXX 1617
SDDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLPE
Sbjct: 299 SDDDLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLPEQRQSTQQHP 358
Query: 1618 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMNRQQDYMYSRLMXXXXXXX 1797
ADMNRQQDYMYSRLM
Sbjct: 359 QHLQSSHQQHPLQQNQDQHHSFLHQLHAQQQHQQQQFAADMNRQQDYMYSRLMSQQQQQS 418
Query: 1798 XXXXXFDSTPGFSHPFGSMXXXXXXXXXXXXXXXXXXXXXXXXDLFNRXXXXXXXXXXXX 1977
FDSTPGFSHPFGSM DLFNR
Sbjct: 419 QQQRQFDSTPGFSHPFGSMQQQQQSSQQQQHQSQSSQSSSLLQDLFNRQQQQHQAQQQAQ 478
Query: 1978 XXXXXXMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSSTTQQAPPHMTXXXXXXX 2157
MYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSSTTQQAPPHMT
Sbjct: 479 QHQQQQMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSSTTQQAPPHMTQQSQQQQ 538
Query: 2158 XXXXXXMGLFGMGGXXXXXXXXXXXXXXXXXXXFKALLPNVNVRFMDDNSMSRWSHENSL 2337
MGLFGMGG FKALLPNVNVRFMDDNSMSRWSHENSL
Sbjct: 539 QQQQSSMGLFGMGGHQSMMQDHQSQQPQSAQDAFKALLPNVNVRFMDDNSMSRWSHENSL 598
Query: 2338 RSSAVPPPPGFSSVMNR 2388
RSSAVPPPPGFSSVMNR
Sbjct: 599 RSSAVPPPPGFSSVMNR 615