Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= D2089_5
(1848 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|25146811|ref|NP_741041.1| human PTB hnRNP homolog PTB-1, huma... 1073 0.0
gi|7498238|pir||T20381 hypothetical protein D2089.4 - Caenorhabd... 997 0.0
gi|39597395|emb|CAE59624.1| Hypothetical protein CBG03033 [Caeno... 988 0.0
gi|25395616|pir||A88299 protein D2089.4 [imported] - Caenorhabdi... 942 0.0
gi|25146814|ref|NP_741042.1| human PTB hnRNP homolog PTB-1, huma... 751 0.0
gi|31230545|ref|XP_318405.1| ENSANGP00000002751 [Anopheles gambi... 499 e-140
gi|16589094|gb|AAL27010.1| hephaestus [Drosophila melanogaster] 483 e-135
gi|28571965|ref|NP_788780.1| CG31000-PH [Drosophila melanogaster... 483 e-135
gi|17864284|ref|NP_524703.1| CG31000-PC [Drosophila melanogaster... 483 e-135
gi|45552115|ref|NP_788776.2| CG31000-PG [Drosophila melanogaster... 483 e-135
gi|24651780|ref|NP_733460.1| CG31000-PB [Drosophila melanogaster... 483 e-135
gi|42490826|gb|AAH66210.1| Unknown (protein for MGC:76740) [Mus ... 454 e-126
gi|13938631|gb|AAH07472.1| Ptbp1 protein [Mus musculus] >gnl|BL_... 454 e-126
gi|30583817|gb|AAP36157.1| Homo sapiens polypyrimidine tract bin... 452 e-126
gi|4506243|ref|NP_002810.1| polypyrimidine tract-binding protein... 452 e-126
gi|28278766|gb|AAH45068.1| Ptbp1-prov protein [Xenopus laevis] 452 e-125
gi|20809354|gb|AAH28848.1| Ptbp1 protein [Mus musculus] 451 e-125
gi|6002571|gb|AAF00041.1| hnRNP I-related RNA transport protein ... 451 e-125
gi|38197632|gb|AAH61858.1| Ptb protein [Rattus norvegicus] 451 e-125
gi|266862|sp|Q00438|PTB_RAT Polypyrimidine tract-binding protein... 450 e-125
gi|480289|pir||S36629 polypyrimidine tract-binding protein PTB-2... 449 e-124
gi|47523538|ref|NP_999396.1| polypyrimidine tract-binding protei... 447 e-124
gi|14165464|ref|NP_114367.1| polypyrimidine tract-binding protei... 446 e-124
gi|28849152|dbj|BAC65159.1| polypirimidine tract binding protein... 446 e-124
gi|26336949|dbj|BAC32158.1| unnamed protein product [Mus musculu... 444 e-123
gi|14165466|ref|NP_114368.1| polypyrimidine tract-binding protei... 441 e-122
gi|13487910|ref|NP_071961.1| pyrimidine binding protein 1; pyrim... 440 e-122
gi|27806103|ref|NP_776867.1| polypyrimidine tract binding protei... 437 e-121
gi|50751272|ref|XP_422322.1| PREDICTED: similar to non-neuronal ... 437 e-121
gi|110819|pir||A41718 polypyrimidine tract-binding protein PTB-1... 436 e-121
gi|13786186|ref|NP_112636.1| regulator of differentiation (in S.... 435 e-120
gi|22218304|gb|AAM94624.1| non-neuronal splice variant nPTB3 [Ho... 434 e-120
gi|30039680|ref|NP_835458.1| ROD1 regulator of differentiation 1... 434 e-120
gi|21450285|ref|NP_659153.1| ROD1 regulator of differentiation 1... 434 e-120
gi|9507003|ref|NP_062423.1| polypyrimidine tract binding protein... 433 e-120
gi|16580749|dbj|BAB71742.1| PTB-like protein L [Homo sapiens] >g... 433 e-120
gi|19911240|dbj|BAB86943.1| polypirimidine tract binding protein... 433 e-120
gi|25392158|pir||JC7526 polypyrimidine tract-binding protein-lik... 433 e-120
gi|17861972|gb|AAL39463.1| LD03185p [Drosophila melanogaster] 432 e-119
gi|27882560|gb|AAH44585.1| ROD1 protein [Homo sapiens] 431 e-119
gi|50401356|sp|O95758|ROD1_HUMAN Regulator of differentiation 1 ... 431 e-119
gi|38569466|ref|NP_005147.3| ROD1 regulator of differentiation 1... 431 e-119
gi|22218306|gb|AAM94625.1| non-neuronal splice variant nPTB4 [Ho... 429 e-119
gi|34859921|ref|XP_227635.2| similar to polypyrimidine tract bin... 429 e-118
gi|10863997|ref|NP_067013.1| polypyrimidine tract binding protei... 429 e-118
gi|16307418|gb|AAH10255.1| Polypyrimidine tract binding protein ... 426 e-117
gi|26331660|dbj|BAC29560.1| unnamed protein product [Mus musculus] 424 e-117
gi|50761061|ref|XP_418219.1| PREDICTED: similar to polypyrimidin... 408 e-112
gi|38095729|ref|XP_135596.2| similar to Ptbp1 protein [Mus muscu... 404 e-111
gi|6679515|ref|NP_032982.1| polypyrimidine tract binding protein... 397 e-109
gi|25058871|gb|AAH39896.1| Similar to ROD1 regulator of differen... 377 e-103
gi|33414511|ref|NP_877970.1| polypyrimidine tract-binding protei... 375 e-102
gi|57004|emb|CAA43203.1| pyrimidine binding protein 2 [Rattus no... 374 e-102
gi|20983091|ref|XP_141607.1| similar to polypyrimidine tract-bin... 356 1e-96
gi|38085915|ref|XP_358182.1| similar to polypyrimidine tract-bin... 356 1e-96
gi|47218405|emb|CAG12676.1| unnamed protein product [Tetraodon n... 347 6e-94
gi|9955329|pdb|1QM9|A Chain A, Nmr, Representative Structure 251 3e-65
gi|22329999|ref|NP_175010.2| polypyrimidine tract-binding protei... 248 3e-64
gi|28949889|emb|CAD70621.1| polypyrimidine track-binding protein... 246 2e-63
gi|28558998|ref|NP_787041.1| polypyrimidine tract-binding protei... 241 3e-62
gi|47209150|emb|CAF89890.1| unnamed protein product [Tetraodon n... 224 7e-57
gi|26353062|dbj|BAC40161.1| unnamed protein product [Mus musculus] 216 1e-54
gi|50762019|ref|XP_424912.1| PREDICTED: similar to regulator of ... 211 6e-53
gi|16580751|dbj|BAB71743.1| PTB-like protein S [Homo sapiens] 207 9e-52
gi|13879378|gb|AAH06666.1| Ptbp1 protein [Mus musculus] 183 1e-44
gi|34862166|ref|XP_237488.2| similar to 25kDa nuclear protein [R... 159 2e-37
gi|47208707|emb|CAF90432.1| unnamed protein product [Tetraodon n... 159 2e-37
gi|12851214|dbj|BAB28977.1| unnamed protein product [Mus musculus] 147 6e-34
gi|47198889|emb|CAF88128.1| unnamed protein product [Tetraodon n... 146 1e-33
gi|34908612|ref|NP_915653.1| P0677H08.6 [Oryza sativa (japonica ... 137 7e-31
gi|11358627|pir||T51814 polypyrimidine tract-binding protein hom... 125 3e-27
gi|15232047|ref|NP_186764.1| polypyrimidine tract-binding protei... 125 3e-27
gi|26351857|dbj|BAC39565.1| unnamed protein product [Mus musculus] 125 3e-27
gi|33667042|ref|NP_796275.2| heterogeneous nuclear ribonucleopro... 125 3e-27
gi|11527777|dbj|BAB18649.1| heterogeneous nuclear ribonucleoprot... 125 3e-27
gi|46812638|gb|AAH69184.1| Heterogeneous nuclear ribonucleoprote... 125 3e-27
gi|4557645|ref|NP_001524.1| heterogeneous nuclear ribonucleoprot... 125 3e-27
gi|34855641|ref|XP_214878.2| heterogeneous nuclear ribonucleopro... 125 3e-27
gi|26330256|dbj|BAC28858.1| unnamed protein product [Mus musculus] 125 4e-27
gi|33667082|ref|NP_659051.2| RIKEN cDNA 2810036L13 [Mus musculus... 125 4e-27
gi|12849891|dbj|BAB28521.1| unnamed protein product [Mus musculus] 125 4e-27
gi|42407521|dbj|BAD10638.1| putative polypyrimidine tract-bindin... 124 1e-26
gi|41055393|ref|NP_957393.1| similar to heterogeneous nuclear ri... 124 1e-26
gi|50756063|ref|XP_414998.1| PREDICTED: similar to hypothetical ... 124 1e-26
gi|15238677|ref|NP_200130.1| polypyrimidine tract-binding protei... 123 2e-26
gi|25988650|gb|AAN76190.1| BLOCK24 variant [Homo sapiens] 122 2e-26
gi|31416927|gb|AAH08217.2| LOC92906 protein [Homo sapiens] 122 2e-26
gi|25988649|gb|AAN76189.1| BLOCK24 variant [Homo sapiens] 122 2e-26
gi|20149709|ref|NP_612403.2| hypothetical protein BC008217 [Homo... 122 2e-26
gi|34853244|ref|XP_231055.2| similar to Neurexophilin 2 precurso... 120 1e-25
gi|47087069|ref|NP_998548.1| zgc:66175 [Danio rerio] >gnl|BL_ORD... 118 5e-25
gi|18921326|gb|AAL82531.1| putative polypyrimidine tract-binding... 117 7e-25
gi|50416457|gb|AAH77493.1| Unknown (protein for MGC:82601) [Xeno... 115 3e-24
gi|40882465|gb|AAR96144.1| RE74969p [Drosophila melanogaster] 114 6e-24
gi|17136488|ref|NP_476731.1| CG9218-PA [Drosophila melanogaster]... 114 1e-23
gi|4929470|gb|AAD34009.1| RNA-binding protein XlhnRNPL [Xenopus ... 114 1e-23
gi|34861998|ref|XP_233805.2| similar to 2810036L13Rik protein [R... 113 1e-23
gi|47224789|emb|CAG06359.1| unnamed protein product [Tetraodon n... 112 3e-23
gi|33285207|gb|AAL16320.2| Hypothetical protein C44B7.2a [Caenor... 110 9e-23
gi|38075526|ref|XP_354793.1| similar to pyrimidine binding prote... 110 1e-22
gi|46981251|gb|AAT07569.1| putative polypyrimidine track-binding... 109 2e-22
gi|17532395|ref|NP_495412.1| heterogeneous nuclear ribonucleopro... 107 7e-22
gi|7497376|pir||T15805 hypothetical protein C44B7.2 - Caenorhabd... 107 7e-22
gi|17532397|ref|NP_495411.1| heterogeneous nuclear ribonucleopro... 107 7e-22
gi|39590251|emb|CAE65989.1| Hypothetical protein CBG11180 [Caeno... 95 5e-18
gi|41176626|gb|AAR99600.1| polypyrimidine binding protein [Trypa... 94 1e-17
gi|34912728|ref|NP_917711.1| putative polypyrimidine tract-bindi... 92 3e-17
gi|34863411|ref|XP_236249.2| similar to KIAA0856 protein [Rattus... 92 4e-17
gi|26346727|dbj|BAC37012.1| unnamed protein product [Mus musculus] 88 6e-16
gi|23612147|ref|NP_703727.1| polypyrimidine tract binding protei... 81 1e-13
gi|50756060|ref|XP_414997.1| PREDICTED: similar to hypothetical ... 80 1e-13
gi|23484718|gb|EAA19954.1| neural polypyrimidine tract binding p... 77 1e-12
gi|13435822|gb|AAH04763.1| 2810036L13Rik protein [Mus musculus] 76 2e-12
gi|4099724|gb|AAD09652.1| PTBP2 [Homo sapiens] 75 4e-12
gi|20260638|gb|AAM13217.1| putative polypyrimidine tract-binding... 74 2e-11
gi|12311843|emb|CAC22661.1| possible RNA-binding protein [Leishm... 72 3e-11
gi|4001819|gb|AAC94999.1| putative polypyrimidine tract-binding ... 72 6e-11
gi|31240113|ref|XP_320470.1| ENSANGP00000016737 [Anopheles gambi... 63 2e-08
gi|20987847|gb|AAH30461.1| Hnrpl protein [Mus musculus] 62 4e-08
gi|2760632|dbj|BAA24237.1| protein L [Mus musculus] 62 6e-08
gi|24655867|ref|NP_725914.1| CG9218-PB [Drosophila melanogaster]... 59 4e-07
gi|24655858|ref|NP_725913.1| CG9218-PC [Drosophila melanogaster]... 59 4e-07
gi|25009665|gb|AAN71009.1| AT01055p [Drosophila melanogaster] 59 4e-07
gi|24655872|ref|NP_725915.1| CG9218-PD [Drosophila melanogaster]... 59 4e-07
gi|15217573|ref|NP_177322.1| polyadenylate-binding protein 5 (PA... 53 2e-05
gi|166786|gb|AAA32832.1| poly(A)-binding protein 53 2e-05
gi|38100717|gb|EAA47810.1| hypothetical protein MG03053.4 [Magna... 50 1e-04
gi|49111771|ref|XP_411837.1| hypothetical protein AN7700.2 [Aspe... 50 2e-04
gi|27820087|gb|AAO25069.1| GH05823p [Drosophila melanogaster] 50 2e-04
gi|32408509|ref|XP_324736.1| hypothetical protein [Neurospora cr... 50 2e-04
gi|38089612|ref|XP_357917.1| similar to Heterogeneous nuclear ri... 50 2e-04
gi|48094353|ref|XP_394151.1| similar to ENSANGP00000016737 [Apis... 49 3e-04
gi|50286493|ref|XP_445675.1| unnamed protein product [Candida gl... 49 5e-04
gi|38085199|ref|XP_140742.4| expressed sequence AI646761 [Mus mu... 48 0.001
gi|47497548|dbj|BAD19620.1| porin-like protein [Oryza sativa (ja... 47 0.002
gi|50725522|dbj|BAD32991.1| RNA recognition motif (RRM)-containi... 47 0.002
gi|34864385|ref|XP_220079.2| similar to 1110018J23Rik protein [R... 47 0.002
gi|47497054|dbj|BAD19106.1| unknown protein [Oryza sativa (japon... 47 0.002
gi|6321394|ref|NP_011471.1| Cleavage and polyadenylation factor ... 47 0.002
gi|4103869|gb|AAD01869.1| PTBP2 [Gallus gallus] 46 0.003
gi|37806432|dbj|BAC99625.1| hypothetical protein [Oryza sativa (... 46 0.003
gi|31240911|ref|XP_320869.1| ENSANGP00000019197 [Anopheles gambi... 45 0.005
gi|34911438|ref|NP_917066.1| P0431H09.19 [Oryza sativa (japonica... 45 0.005
gi|42415509|ref|NP_963873.1| non-POU domain containing, octamer-... 45 0.006
gi|42571201|ref|NP_973674.1| RNA recognition motif (RRM)-contain... 45 0.008
gi|37360062|dbj|BAC98009.1| mKIAA0723 protein [Mus musculus] 45 0.008
gi|106964|pir||B40016 matrin 3 - human (fragment) 45 0.008
gi|40788339|dbj|BAA34443.2| KIAA0723 protein [Homo sapiens] 45 0.008
gi|111944|pir||A40016 matrin 3 - rat 45 0.008
gi|9506881|ref|NP_062022.1| matrin 3 [Rattus norvegicus] >gnl|BL... 45 0.008
gi|34878612|ref|XP_212889.2| hypothetical protein XP_212889 [Rat... 45 0.008
gi|18406092|ref|NP_565990.1| RNA recognition motif (RRM)-contain... 45 0.008
gi|6563246|gb|AAF17217.1| matrin 3 [Homo sapiens] 45 0.008
gi|25141233|ref|NP_034901.2| matrin 3 [Mus musculus] >gnl|BL_ORD... 45 0.008
gi|9956070|gb|AAG02007.1| similar to Homo sapiens mRNA for KIAA0... 45 0.008
gi|21626466|ref|NP_061322.2| matrin 3 [Homo sapiens] >gnl|BL_ORD... 45 0.008
gi|25408819|pir||E84859 probable RNA-binding protein [imported] ... 45 0.008
gi|45383822|ref|NP_989478.1| matrin 3 [Gallus gallus] >gnl|BL_OR... 44 0.010
gi|19075417|ref|NP_587917.1| RNA binding protein [Schizosaccharo... 44 0.010
gi|50288343|ref|XP_446600.1| unnamed protein product [Candida gl... 44 0.010
gi|45185072|ref|NP_982789.1| ABL158Cp [Eremothecium gossypii] >g... 44 0.013
gi|50288333|ref|XP_446595.1| unnamed protein product [Candida gl... 44 0.017
gi|7439965|pir||T00768 polyadenylate-binding protein T22J18.7 - ... 44 0.017
gi|17737284|ref|NP_511045.1| CG4528-PA [Drosophila melanogaster]... 44 0.017
gi|9930616|gb|AAG02117.1| poly(A) binding protein [Arabidopsis t... 44 0.017
gi|15219945|ref|NP_173690.1| polyadenylate-binding protein 3 (PA... 44 0.017
gi|23956110|ref|NP_067310.1| U2 small nuclear ribonucleoprotein ... 44 0.017
gi|34858820|ref|XP_342529.1| similar to U2 small nuclear ribonuc... 44 0.017
gi|48139036|ref|XP_393440.1| similar to ENSANGP00000019197 [Apis... 44 0.017
gi|47226530|emb|CAG08546.1| unnamed protein product [Tetraodon n... 43 0.022
gi|50416291|ref|XP_457541.1| unnamed protein product [Debaryomyc... 43 0.022
gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa (japo... 43 0.022
gi|480602|pir||S37085 polyadenylate-binding protein - fern (Anem... 43 0.022
gi|4507123|ref|NP_003083.1| small nuclear ribonucleoprotein poly... 43 0.022
gi|50749787|ref|XP_421755.1| PREDICTED: similar to 1110018J23Rik... 43 0.029
gi|17541324|ref|NP_500504.1| small nuclear ribonucleoprotein (rn... 43 0.029
gi|49257361|gb|AAH72799.1| Unknown (protein for MGC:80122) [Xeno... 42 0.038
gi|46436383|gb|EAK95746.1| hypothetical protein CaO19.9801 [Cand... 42 0.038
gi|26342202|dbj|BAC34763.1| unnamed protein product [Mus musculus] 42 0.038
gi|15227815|ref|NP_179916.1| polyadenylate-binding protein, puta... 42 0.038
gi|13430610|gb|AAK25927.1| putative poly(A) binding protein [Ara... 42 0.038
gi|50311967|ref|XP_456015.1| unnamed protein product [Kluyveromy... 42 0.038
gi|50256721|gb|EAL19442.1| hypothetical protein CNBH0140 [Crypto... 42 0.050
gi|12850013|dbj|BAB28565.1| unnamed protein product [Mus musculus] 42 0.050
gi|42659376|ref|XP_291671.4| similar to 1110018J23Rik protein [H... 42 0.050
gi|6319977|ref|NP_010057.1| Putative RNA binding protein and par... 42 0.065
gi|46228164|gb|EAK89063.1| RNA binding protein [Cryptosporidium ... 42 0.065
gi|6324132|ref|NP_014202.1| RNA binding protein that binds to an... 42 0.065
gi|7446360|pir||T09108 RNA binding protein, 24K, chloroplast - s... 42 0.065
gi|50260203|gb|EAL22864.1| hypothetical protein CNBB0850 [Crypto... 42 0.065
gi|38637585|dbj|BAD03867.1| hypothetical protein [Oryza sativa (... 42 0.065
gi|49075980|ref|XP_402013.1| hypothetical protein UM04398.1 [Ust... 41 0.085
gi|19113894|ref|NP_592982.1| negative regulator of differentiati... 41 0.085
gi|39585995|emb|CAE68286.1| Hypothetical protein CBG13971 [Caeno... 41 0.11
gi|45201105|ref|NP_986675.1| AGR010Cp [Eremothecium gossypii] >g... 41 0.11
gi|49904005|gb|AAH76655.1| Unknown (protein for MGC:79524) [Xeno... 41 0.11
gi|50759792|ref|XP_417784.1| PREDICTED: similar to PTB-associate... 40 0.15
gi|42566726|ref|NP_193001.2| RNA recognition motif (RRM)-contain... 40 0.15
gi|34898250|ref|NP_910471.1| hypothetical protien~similar to Ory... 40 0.15
gi|7439967|pir||T06979 polyadenylate-binding protein - wheat >gn... 40 0.15
gi|23479360|gb|EAA16211.1| splicing factor-like protein, putativ... 40 0.15
gi|38637093|dbj|BAD03349.1| hypothetical protein [Oryza sativa (... 40 0.15
gi|49115386|gb|AAH73339.1| Unknown (protein for MGC:80752) [Xeno... 40 0.15
gi|47834699|gb|AAT39003.1| AML15 [Triticum aestivum] 40 0.19
gi|15233980|ref|NP_194208.1| 31 kDa ribonucleoprotein, chloropla... 40 0.19
gi|15294254|gb|AAK95304.1| AT4g24770/F22K18_30 [Arabidopsis thal... 40 0.19
gi|681908|dbj|BAA06521.1| cp31 [Arabidopsis thaliana] 40 0.19
gi|629557|pir||S49030 RNA-binding protein RNP-D precursor - Arab... 40 0.19
gi|45433582|ref|NP_991398.1| hypothetical protein MGC75848 [Xeno... 40 0.19
gi|1076305|pir||S53492 RNA-binding protein cp31 precursor - Arab... 40 0.19
gi|475719|gb|AAA18379.1| RNA-binding protein 2 40 0.19
gi|99684|pir||S20940 DNA-binding protein - Arabidopsis thaliana 40 0.19
gi|10442545|gb|AAG17365.1| PTB-associated splicing factor [Mus m... 40 0.25
gi|4826998|ref|NP_005057.1| splicing factor proline/glutamine ri... 40 0.25
gi|29881667|gb|AAH51192.1| Splicing factor proline/glutamine ric... 40 0.25
gi|49077092|ref|XP_402450.1| hypothetical protein UM04835.1 [Ust... 40 0.25
gi|26352530|dbj|BAC39895.1| unnamed protein product [Mus musculus] 40 0.25
gi|33879558|gb|AAH27708.1| SFPQ protein [Homo sapiens] 40 0.25
gi|23956214|ref|NP_076092.1| splicing factor proline/glutamine r... 40 0.25
gi|27709474|ref|XP_229071.1| similar to poly(A) binding protein,... 40 0.25
gi|50555840|ref|XP_505328.1| hypothetical protein [Yarrowia lipo... 40 0.25
gi|38014635|gb|AAH04534.2| SFPQ protein [Homo sapiens] 40 0.25
gi|34871066|ref|XP_342921.1| similar to PTB-associated splicing ... 40 0.25
gi|47834691|gb|AAT38999.1| AML5 [Medicago truncatula] 39 0.32
gi|45735834|dbj|BAD12869.1| putative meiosis protein mei2 [Oryza... 39 0.32
gi|47834693|gb|AAT39000.1| AML1 [Aegilops speltoides] 39 0.32
gi|17554536|ref|NP_497855.1| RNA binding motif single stranded i... 39 0.32
gi|33356910|pdb|1FNX|H Chain H, Solution Structure Of The Huc Rb... 39 0.42
gi|26342432|dbj|BAC34878.1| unnamed protein product [Mus musculus] 39 0.42
gi|26326603|dbj|BAC27045.1| unnamed protein product [Mus musculus] 39 0.42
gi|50310969|ref|XP_455507.1| unnamed protein product [Kluyveromy... 39 0.42
gi|49355765|ref|NP_115657.2| ELAV-like protein 3 isoform 2; Hu a... 39 0.42
gi|542846|pir||JC2116 hippocampal 38K autoantigen protein - huma... 39 0.42
gi|26334205|dbj|BAC30820.1| unnamed protein product [Mus musculus] 39 0.42
gi|49355761|ref|NP_001411.2| ELAV-like protein 3 isoform 1; Hu a... 39 0.42
gi|27229298|ref|NP_758827.1| ELAV-like protein 3 [Rattus norvegi... 39 0.42
gi|26349469|dbj|BAC38374.1| unnamed protein product [Mus musculus] 39 0.42
gi|30520025|ref|NP_848775.1| RNA binding motif, single stranded ... 39 0.42
gi|26328705|dbj|BAC28091.1| unnamed protein product [Mus musculus] 39 0.42
gi|26337895|dbj|BAC32633.1| unnamed protein product [Mus musculus] 39 0.42
gi|26328767|dbj|BAC28122.1| unnamed protein product [Mus musculus] 39 0.42
gi|7270986|emb|CAB77630.1| spliceosome-associated essential prot... 39 0.42
gi|39588915|emb|CAE69545.1| Hypothetical protein CBG15757 [Caeno... 39 0.42
gi|49904647|gb|AAH76615.1| Zfml protein [Mus musculus] 39 0.55
gi|1350820|sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloro... 39 0.55
gi|47230597|emb|CAF99790.1| unnamed protein product [Tetraodon n... 39 0.55
gi|38107608|gb|EAA53755.1| hypothetical protein MG09505.4 [Magna... 39 0.55
gi|12230584|sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chl... 39 0.55
gi|6679098|ref|NP_032743.1| zinc finger, matrin-like; nuclear pr... 39 0.55
gi|47214762|emb|CAG01297.1| unnamed protein product [Tetraodon n... 39 0.55
gi|39589677|emb|CAE66912.1| Hypothetical protein CBG12298 [Caeno... 39 0.55
gi|24645384|ref|NP_649899.1| CG9373-PA [Drosophila melanogaster]... 38 0.72
gi|47834705|gb|AAT39006.1| AML1 [Solanum tuberosum] 38 0.72
gi|23123859|ref|ZP_00105894.1| COG0724: RNA-binding proteins (RR... 38 0.72
gi|50293545|ref|XP_449184.1| unnamed protein product [Candida gl... 38 0.72
gi|47086115|ref|NP_998443.1| zgc:85935 [Danio rerio] >gnl|BL_ORD... 38 0.72
gi|49618969|gb|AAT68069.1| proline/glutamine rich splicing facto... 38 0.72
gi|21429908|gb|AAM50632.1| GH11495p [Drosophila melanogaster] 38 0.72
gi|7505522|pir||T29387 hypothetical protein K08D10.4 - Caenorhab... 38 0.72
gi|34854723|ref|XP_342439.1| similar to RNA binding motif, singl... 38 0.72
gi|32411147|ref|XP_326054.1| hypothetical protein [Neurospora cr... 38 0.94
gi|16741344|gb|AAH16501.1| Rbms1 protein [Mus musculus] 38 0.94
gi|28557621|gb|AAO45216.1| RE27227p [Drosophila melanogaster] 38 0.94
gi|9937972|ref|NP_064692.1| RNA binding motif, single stranded i... 38 0.94
gi|17137710|ref|NP_477453.1| CG7697-PA [Drosophila melanogaster]... 38 0.94
gi|6650523|gb|AAF21885.1| MEI2 [Arabidopsis thaliana] 38 0.94
gi|42566920|ref|NP_193546.2| RNA recognition motif (RRM)-contain... 38 0.94
gi|34785556|gb|AAH57866.1| Rbms1 protein [Mus musculus] 38 0.94
gi|998355|gb|AAA76605.1| colony 1 38 0.94
gi|50553034|ref|XP_503927.1| hypothetical protein [Yarrowia lipo... 38 0.94
gi|45384304|ref|NP_990355.1| MSSP-1 [Gallus gallus] >gnl|BL_ORD_... 37 1.2
gi|50732251|ref|XP_418548.1| PREDICTED: similar to hypothetical ... 37 1.2
gi|4506447|ref|NP_002888.1| RNA binding motif, single stranded i... 37 1.2
gi|19115119|ref|NP_594207.1| Protein with 3 RNA binding domains;... 37 1.2
gi|2135217|pir||S53612 gene MSSP-2 protein - human 37 1.2
gi|8400724|ref|NP_058523.1| RNA binding motif, single stranded i... 37 1.2
gi|38079602|ref|XP_355585.1| similar to hypothetical protein MGC... 37 1.2
gi|453413|emb|CAA54628.1| MSSP-2 [Homo sapiens] 37 1.2
gi|26347053|dbj|BAC37175.1| unnamed protein product [Mus musculus] 37 1.2
gi|50304193|ref|XP_452046.1| unnamed protein product [Kluyveromy... 37 1.2
gi|34853680|ref|XP_342611.1| similar to hypothetical protein MGC... 37 1.2
gi|1346591|sp|P29558|MSSP_HUMAN Single-stranded DNA-binding prot... 37 1.2
gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding ... 37 1.2
gi|8400718|ref|NP_058520.1| RNA binding motif, single stranded i... 37 1.2
gi|47834685|gb|AAT38996.1| Mei2-like protein [Pinus taeda] 37 1.6
gi|7446349|pir||S72368 single-stranded DNA-binding protein MSSP1... 37 1.6
gi|50252721|dbj|BAD28947.1| putative AML1 [Oryza sativa (japonic... 37 1.6
gi|46122133|ref|XP_385620.1| conserved hypothetical protein [Gib... 37 1.6
gi|22330574|ref|NP_177325.2| cleavage stimulation factor, putati... 37 1.6
gi|21591633|gb|AAM64164.1| cleavage stimulation factor 64 [Arabi... 37 1.6
gi|23491371|gb|EAA22920.1| Gbp1p protein-related [Plasmodium yoe... 37 1.6
gi|4031|emb|CAA78478.1| Negative growth regulatory protein [Sacc... 37 1.6
gi|23489274|gb|EAA21530.1| hypothetical protein [Plasmodium yoel... 37 1.6
gi|6319689|ref|NP_009771.1| negative growth regulatory protein; ... 37 1.6
gi|50419577|ref|XP_458315.1| unnamed protein product [Debaryomyc... 37 1.6
gi|37748043|gb|AAH59527.1| LOC402896 protein [Danio rerio] 37 1.6
gi|47215854|emb|CAG02317.1| unnamed protein product [Tetraodon n... 37 1.6
gi|7439963|pir||T07933 polyadenylate-binding protein RB47 precur... 37 1.6
gi|41107668|gb|AAH65442.1| Zgc:77730 protein [Danio rerio] 37 2.1
gi|50738734|ref|XP_419331.1| PREDICTED: similar to U2 small nucl... 37 2.1
gi|47834701|gb|AAT39004.1| AML1 [Citrus unshiu] 37 2.1
gi|13548328|emb|CAC35875.1| putative protein [Arabidopsis thaliana] 37 2.1
gi|50305507|ref|XP_452713.1| unnamed protein product [Kluyveromy... 37 2.1
gi|50548795|ref|XP_501867.1| hypothetical protein [Yarrowia lipo... 37 2.1
gi|13560783|gb|AAK30205.1| poly(A)-binding protein [Daucus carota] 37 2.1
gi|47225344|emb|CAG09844.1| unnamed protein product [Tetraodon n... 37 2.1
gi|47225618|emb|CAG07961.1| unnamed protein product [Tetraodon n... 37 2.1
gi|27695126|gb|AAH43623.1| Rbms1-prov protein [Xenopus laevis] 36 2.7
gi|88609|pir||S19873 single-stranded DNA-binding protein - human 36 2.7
gi|48102436|ref|XP_395357.1| similar to TIA-1 homologue [Apis me... 36 2.7
gi|28828526|gb|AAO51134.1| similar to Dictyostelium discoideum (... 36 2.7
gi|31206605|ref|XP_312269.1| ENSANGP00000021087 [Anopheles gambi... 36 2.7
gi|31201653|ref|XP_309774.1| ENSANGP00000012477 [Anopheles gambi... 36 2.7
gi|37930176|gb|AAP75556.1| RNA binding motif single stranded int... 36 2.7
gi|33772111|gb|AAQ54492.1| polypyrimidine tract-binding protein ... 36 2.7
gi|23509878|ref|NP_702545.1| U2 snRNP auxiliary factor, putative... 36 2.7
gi|7657502|ref|NP_033058.1| RNA binding motif protein 4 [Mus mus... 36 2.7
gi|27754120|ref|NP_079993.2| RBM4-like protein [Mus musculus] >g... 36 2.7
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus] 36 2.7
gi|13899354|ref|NP_113680.1| hypothetical protein similar to RNA... 36 2.7
gi|13182931|gb|AAK14991.1| RNA-binding protein lark [Oryctolagus... 36 2.7
gi|13752575|ref|NP_112539.1| cleavage stimulation factor, 3' pre... 36 3.6
gi|47834689|gb|AAT38998.1| AML1 [Medicago truncatula] 36 3.6
gi|26330250|dbj|BAC28855.1| unnamed protein product [Mus musculu... 36 3.6
gi|26341156|dbj|BAC34240.1| unnamed protein product [Mus musculus] 36 3.6
gi|38073944|ref|XP_354725.1| similar to U2 small nuclear ribonuc... 36 3.6
gi|26351239|dbj|BAC39256.1| unnamed protein product [Mus musculus] 36 3.6
gi|14133235|dbj|BAA83045.2| KIAA1093 protein [Homo sapiens] 36 3.6
gi|4759156|ref|NP_004587.1| small nuclear ribonucleoprotein poly... 36 3.6
gi|41017904|sp|Q62189|RU1A_MOUSE U1 small nuclear ribonucleoprot... 36 3.6
gi|31980689|ref|NP_056597.2| small nuclear ribonucleoprotein pol... 36 3.6
gi|20072518|gb|AAH26995.1| Cstf2t-pending protein [Mus musculus] 36 3.6
gi|38093624|ref|XP_358084.1| similar to small nuclear RNA [Mus m... 36 3.6
gi|34855379|ref|XP_214845.2| similar to U1 small nuclear ribonuc... 36 3.6
gi|47210138|emb|CAF91282.1| unnamed protein product [Tetraodon n... 36 3.6
gi|29336045|ref|NP_444344.1| poly A binding protein, cytoplasmic... 36 3.6
gi|34862808|ref|XP_219809.2| similar to Cstf2t-pending protein [... 36 3.6
gi|49067186|ref|XP_397883.1| hypothetical protein UM00268.1 [Ust... 36 3.6
gi|38093673|ref|XP_111314.2| similar to GLE1-like, RNA export me... 36 3.6
gi|2554638|pdb|2U1A| Rna Binding Domain 2 Of Human U1a Protein,... 36 3.6
gi|50510589|dbj|BAD32280.1| mKIAA0689 protein [Mus musculus] 36 3.6
gi|20380061|gb|AAH28239.1| Cleavage stimulation factor, 3' pre-R... 36 3.6
gi|14149675|ref|NP_056050.1| cleavage stimulation factor, 3' pre... 36 3.6
gi|14779065|ref|XP_039385.1| KIAA1093 protein [Homo sapiens] >gn... 36 3.6
gi|17554534|ref|NP_497856.1| mssp-1 (39.3 kD) (3F366) [Caenorhab... 36 3.6
gi|20306948|gb|AAH28626.1| KIAA1093 protein [Homo sapiens] 36 3.6
gi|24661759|ref|NP_648337.1| CG3335-PA [Drosophila melanogaster]... 36 3.6
gi|21064855|gb|AAM29657.1| SD14970p [Drosophila melanogaster] 36 3.6
gi|46309380|ref|YP_006270.1| ORF74 [Agrotis segetum granulovirus... 35 4.7
gi|19114796|ref|NP_593884.1| putative cleavage or polyadenylatio... 35 4.7
gi|45552120|ref|NP_788882.2| CG33070-PK [Drosophila melanogaster... 35 4.7
gi|7657506|ref|NP_055298.1| RNA binding motif, single stranded i... 35 4.7
gi|37930169|gb|AAP75555.1| RNA binding motif single stranded int... 35 4.7
gi|21450181|ref|NP_659061.1| RIKEN cDNA D230019K20 [Mus musculus... 35 4.7
gi|39585450|emb|CAE70533.1| Hypothetical protein CBG17168 [Caeno... 35 4.7
gi|6319835|ref|NP_009916.1| Poly(A+) RNA-binding protein, involv... 35 4.7
gi|9295520|gb|AAF86977.1| androgen receptor-related apoptosis-as... 35 4.7
gi|28571398|ref|NP_788878.1| CG33070-PH [Drosophila melanogaster... 35 4.7
gi|1403308|emb|CAA67016.1| sex-lethal [Drosophila subobscura] 35 4.7
gi|28571408|ref|NP_788876.1| CG33070-PD [Drosophila melanogaster... 35 4.7
gi|19113310|ref|NP_596518.1| putative RNA-binding protein [Schiz... 35 4.7
gi|4929888|pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX >gn... 35 4.7
gi|6325072|ref|NP_015140.1| Hypothetical ORF; Ypl184cp [Saccharo... 35 4.7
gi|45552118|ref|NP_788880.2| CG33070-PF [Drosophila melanogaster... 35 4.7
gi|15901908|ref|NP_346512.1| hypothetical protein SP2093 [Strept... 35 4.7
gi|4930239|pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domain... 35 4.7
gi|50728210|ref|XP_416034.1| PREDICTED: similar to MADP-1 protei... 35 4.7
gi|15239901|ref|NP_196780.1| RNA recognition motif (RRM)-contain... 35 4.7
gi|25407526|pir||F85135 hypothetical protein AT4g12630 [imported... 35 4.7
gi|640423|pdb|1SXL| Sex-Lethal Protein (C-Terminus, Or Second R... 35 4.7
gi|38197636|gb|AAH61751.1| Unknown (protein for MGC:72303) [Ratt... 35 4.7
gi|45552119|ref|NP_788881.2| CG33070-PG [Drosophila melanogaster... 35 4.7
gi|48310520|gb|AAT41832.1| At4g12630 [Arabidopsis thaliana] 35 4.7
gi|38541222|gb|AAH62832.1| Unknown (protein for IMAGE:6997127) [... 35 4.7
gi|28972612|dbj|BAC65722.1| mKIAA1093 protein [Mus musculus] 35 4.7
gi|103381|pir||B39725 sex-lethal sex determination protein MS11 ... 35 4.7
gi|28571396|ref|NP_788875.1| CG33070-PC [Drosophila melanogaster... 35 4.7
gi|26342470|dbj|BAC34897.1| unnamed protein product [Mus musculus] 35 4.7
gi|28571394|ref|NP_788879.1| CG33070-PA [Drosophila melanogaster... 35 4.7
gi|12643503|sp|Q24668|SXL_DROSU Sex-lethal protein 35 4.7
gi|47834703|gb|AAT39005.1| AML1 [Lycopersicon esculentum] 35 4.7
gi|12963531|ref|NP_075633.1| non-POU-domain-containing, octamer ... 35 4.7
gi|20988449|gb|AAH30290.1| RBMS3 protein [Homo sapiens] 35 4.7
gi|28317144|gb|AAO39587.1| LD15933p [Drosophila melanogaster] 35 4.7
gi|49067158|ref|XP_397869.1| predicted protein [Ustilago maydis ... 35 6.1
gi|34932414|ref|NP_031389.3| non-POU domain containing, octamer-... 35 6.1
gi|7446345|pir||G01211 54 kDa protein - human >gnl|BL_ORD_ID|473... 35 6.1
gi|34881116|ref|XP_228554.2| similar to non-POU-domain-containin... 35 6.1
gi|543010|pir||S41768 splicing factor homolog - human >gnl|BL_OR... 35 6.1
gi|24648522|ref|NP_732556.1| CG17838-PD [Drosophila melanogaster... 35 6.1
gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon n... 35 6.1
gi|21356139|ref|NP_650913.1| CG17838-PB [Drosophila melanogaster... 35 6.1
gi|24648526|ref|NP_732558.1| CG17838-PC [Drosophila melanogaster... 35 6.1
gi|30584547|gb|AAP36526.1| Homo sapiens non-POU domain containin... 35 6.1
gi|45551939|ref|NP_732557.2| CG17838-PA [Drosophila melanogaster... 35 6.1
gi|50425207|ref|XP_461195.1| unnamed protein product [Debaryomyc... 35 6.1
gi|26328597|dbj|BAC28037.1| unnamed protein product [Mus musculus] 35 6.1
gi|30689921|ref|NP_195137.2| polyadenylate-binding protein 2 (PA... 35 6.1
gi|475720|gb|AAA18380.1| RNA-binding protein 3 35 6.1
gi|18875338|ref|NP_573459.1| cleavage stimulation factor, 3' pre... 35 6.1
gi|30686138|ref|NP_683582.2| RNA-binding protein, putative [Arab... 35 6.1
gi|50746078|ref|XP_426259.1| PREDICTED: similar to non-POU domai... 35 6.1
gi|50745788|ref|XP_420243.1| PREDICTED: similar to CstF-64 [Gall... 35 6.1
gi|12850804|dbj|BAB28857.1| unnamed protein product [Mus musculus] 35 6.1
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [O... 35 6.1
gi|28317322|gb|AAO39657.1| AT01548p [Drosophila melanogaster] 35 6.1
gi|50418751|ref|XP_457895.1| unnamed protein product [Debaryomyc... 35 6.1
gi|27807239|ref|NP_777110.1| cleavage stimulation factor, 3' pre... 35 6.1
gi|34810648|pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal ... 35 6.1
gi|24648520|ref|NP_732555.1| CG17838-PE [Drosophila melanogaster... 35 6.1
gi|27735464|gb|AAH41291.1| Cstf-64-prov protein [Xenopus laevis] 35 6.1
gi|22478042|gb|AAH36719.1| Unknown (protein for MGC:36412) [Mus ... 35 6.1
gi|46438281|gb|EAK97614.1| hypothetical protein CaO19.7368 [Cand... 35 6.1
gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Ara... 35 6.1
gi|4557493|ref|NP_001316.1| cleavage stimulation factor subunit ... 35 6.1
gi|13124797|sp|Q15233|NR54_HUMAN 54 kDa nuclear RNA- and DNA-bin... 35 6.1
gi|46439857|gb|EAK99170.1| hypothetical protein CaO19.5767 [Cand... 35 6.1
gi|46439782|gb|EAK99096.1| hypothetical protein CaO19.13190 [Can... 35 6.1
gi|1171978|sp|P42731|PAB2_ARATH Polyadenylate-binding protein 2 ... 35 6.1
gi|632500|gb|AAB50269.1| polyadenylation factor 64 kDa subunit 35 6.1
gi|21619877|gb|AAH33135.1| Similar to cleavage stimulation facto... 35 6.1
gi|13529479|gb|AAH05465.1| Non-POU-domain-containing, octamer bi... 35 6.1
gi|12836308|dbj|BAB23598.1| unnamed protein product [Mus musculus] 35 6.1
gi|47225009|emb|CAF97424.1| unnamed protein product [Tetraodon n... 35 8.0
gi|50254444|gb|EAL17193.1| hypothetical protein CNBN0220 [Crypto... 35 8.0
gi|50259639|gb|EAL22309.1| hypothetical protein CNBB4840 [Crypto... 35 8.0
gi|38641409|gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctola... 35 8.0
gi|21314767|ref|NP_149105.2| MADP-1 protein; U11/U12 snRNP 31K [... 35 8.0
gi|14211667|dbj|BAB56132.1| MADP-1 protein [Homo sapiens] >gnl|B... 35 8.0
gi|20521948|dbj|BAB13408.2| KIAA1582 protein [Homo sapiens] 35 8.0
gi|33873902|gb|AAH10177.1| MADP-1 protein [Homo sapiens] 35 8.0
gi|50294660|ref|XP_449741.1| unnamed protein product [Candida gl... 35 8.0
gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tab... 35 8.0
gi|23489676|gb|EAA21642.1| protein gar2 [Plasmodium yoelii yoelii] 35 8.0
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sap... 35 8.0
gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis ... 35 8.0
gi|16551820|dbj|BAB71179.1| unnamed protein product [Homo sapiens] 35 8.0
gi|18423684|ref|NP_568815.1| RNA-binding protein 45 (RBP45), put... 35 8.0
gi|31207333|ref|XP_312633.1| ENSANGP00000015348 [Anopheles gambi... 35 8.0
gi|1083555|pir||S54857 small nuclear ribonucleoprotein U2B'' - m... 35 8.0
gi|7767194|pdb|1D8Z|A Chain A, Solution Structure Of The First R... 35 8.0
gi|4506445|ref|NP_002887.1| RNA binding motif protein 4 [Homo sa... 35 8.0
gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius a... 35 8.0
gi|31216942|ref|XP_316330.1| ENSANGP00000005992 [Anopheles gambi... 35 8.0
gi|9280223|dbj|BAB01713.1| unnamed protein product [Arabidopsis ... 35 8.0
gi|21740153|emb|CAD39090.1| hypothetical protein [Homo sapiens] 35 8.0
gi|33413425|ref|NP_061869.2| KIAA1582 protein [Homo sapiens] 35 8.0
>gi|25146811|ref|NP_741041.1| human PTB hnRNP homolog PTB-1, human PTB
hnRNP homolog (67.1 kD) (ptb-1) [Caenorhabditis elegans]
gi|20338920|emb|CAA85411.3| Hypothetical protein D2089.4a
[Caenorhabditis elegans]
Length = 615
Score = 1073 bits (2775), Expect = 0.0
Identities = 543/615 (88%), Positives = 543/615 (88%)
Frame = +1
Query: 1 MTKRGPDDLQLSLRNXXXXXXXXXXXXXXXXXXXXXXXXDSEPKKAKLDPTLYSSQFYTP 180
MTKRGPDDLQLSLRN DSEPKKAKLDPTLYSSQFYTP
Sbjct: 1 MTKRGPDDLQLSLRNGVGGASTTAPGVAAAAYYANVMTADSEPKKAKLDPTLYSSQFYTP 60
Query: 181 AMHHGLMXXXXXXXXXXXXXXXXXXXQLLTGNPITQIQGIQLSTLPQCNSTSAVTSIPVS 360
AMHHGLM QLLTGNPITQIQGIQLSTLPQCNSTSAVTSIPVS
Sbjct: 61 AMHHGLMTADASTVAAVTAAANATTAQLLTGNPITQIQGIQLSTLPQCNSTSAVTSIPVS 120
Query: 361 KVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAVP 540
KVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAVP
Sbjct: 121 KVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAVP 180
Query: 541 IQIRGRTLFAQYSTHRELKFDKNKAISDTESVANGSVSNFEVGTQQQPNSVLRTIIENMM 720
IQIRGRTLFAQYSTHRELKFDKNKAISDTESVANGSVSNFEVGTQQQPNSVLRTIIENMM
Sbjct: 181 IQIRGRTLFAQYSTHRELKFDKNKAISDTESVANGSVSNFEVGTQQQPNSVLRTIIENMM 240
Query: 721 FPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCT 900
FPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCT
Sbjct: 241 FPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCT 300
Query: 901 LRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPYNFAFG 1080
LRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPYNFAFG
Sbjct: 301 LRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPYNFAFG 360
Query: 1081 ANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYLNPLGLTSANLAPSISSMRFPMINLT 1260
ANP PYLNPLGLTSANLAPSISSMRFPMINLT
Sbjct: 361 ANPATTFLTTQLAASTAAAAAVNDSANAAALAPYLNPLGLTSANLAPSISSMRFPMINLT 420
Query: 1261 PVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDK 1440
PVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDK
Sbjct: 421 PVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDK 480
Query: 1441 VKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATL 1620
VKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATL
Sbjct: 481 VKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATL 540
Query: 1621 HLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKL 1800
HLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKL
Sbjct: 541 HLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKL 600
Query: 1801 AENAHLRVSFSKSGI 1845
AENAHLRVSFSKSGI
Sbjct: 601 AENAHLRVSFSKSGI 615
>gi|7498238|pir||T20381 hypothetical protein D2089.4 - Caenorhabditis
elegans
Length = 592
Score = 997 bits (2577), Expect = 0.0
Identities = 515/620 (83%), Positives = 515/620 (83%), Gaps = 5/620 (0%)
Frame = +1
Query: 1 MTKRGPDDLQLSLRNXXXXXXXXXXXXXXXXXXXXXXXXDSEPKKAKLDPTLYSSQFYTP 180
MTKRGPDDLQLSLRN DSEPKKAKLDPTLYSSQFYTP
Sbjct: 1 MTKRGPDDLQLSLRNGVGGASTTAPGVAAAAYYANVMTADSEPKKAKLDPTLYSSQFYTP 60
Query: 181 AMHHGLMXXXXXXXXXXXXXXXXXXXQLLTGNPITQIQGIQLSTLPQCNSTSAVTSIPVS 360
AMHHGLM QLLTGNPITQIQGIQLSTLPQCNSTSAVTSIPVS
Sbjct: 61 AMHHGLMTADASTVAAVTAAANATTAQLLTGNPITQIQGIQLSTLPQCNSTSAVTSIPVS 120
Query: 361 KV-----VHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSG 525
KV VHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSG
Sbjct: 121 KVCGLIVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSG 180
Query: 526 MTAVPIQIRGRTLFAQYSTHRELKFDKNKAISDTESVANGSVSNFEVGTQQQPNSVLRTI 705
MTAVPIQ SVANGSVSNFEVGTQQQPNSVLRTI
Sbjct: 181 MTAVPIQ----------------------------SVANGSVSNFEVGTQQQPNSVLRTI 212
Query: 706 IENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVY 885
IENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVY
Sbjct: 213 IENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVY 272
Query: 886 NGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPY 1065
NGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPY
Sbjct: 273 NGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPY 332
Query: 1066 NFAFGANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYLNPLGLTSANLAPSISSMRFP 1245
NFAFGANP PYLNPLGLTSANLAPSISSMRFP
Sbjct: 333 NFAFGANPATTFLTTQLAASTAAAAAVNDSANAAALAPYLNPLGLTSANLAPSISSMRFP 392
Query: 1246 MINLTPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLAL 1425
MINLTPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLAL
Sbjct: 393 MINLTPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLAL 452
Query: 1426 THLDKVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYP 1605
THLDKVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYP
Sbjct: 453 THLDKVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYP 512
Query: 1606 PCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAM 1785
PCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAM
Sbjct: 513 PCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAM 572
Query: 1786 HNHKLAENAHLRVSFSKSGI 1845
HNHKLAENAHLRVSFSKSGI
Sbjct: 573 HNHKLAENAHLRVSFSKSGI 592
>gi|39597395|emb|CAE59624.1| Hypothetical protein CBG03033
[Caenorhabditis briggsae]
Length = 610
Score = 988 bits (2554), Expect = 0.0
Identities = 507/617 (82%), Positives = 523/617 (84%), Gaps = 4/617 (0%)
Frame = +1
Query: 7 KRGPDDLQLSLRNXXXXXXXXXXXXXX--XXXXXXXXXXDSEPKKAKLDPTLYSSQFYTP 180
+RGPDDLQLSLRN DSEPKKAKLDP+LYSSQFYT
Sbjct: 1 QRGPDDLQLSLRNGGAAATAAVTSAGAPGAGYFANVMTADSEPKKAKLDPSLYSSQFYTT 60
Query: 181 AMHHGLMXXXXXXXXXXXXXXXXXXXQLLTGNPITQIQGIQLSTLPQCNSTSAVTSIPVS 360
+HHGL QLLTGNPITQIQGIQLSTLPQCN TS+ T+ PVS
Sbjct: 61 PLHHGL----ATSGAPVAVAPAATTAQLLTGNPITQIQGIQLSTLPQCNQTSSATTTPVS 116
Query: 361 KVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAVP 540
+VVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEE SAAAFV+GMTAVP
Sbjct: 117 RVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEETSAAAFVTGMTAVP 176
Query: 541 IQIRGRTLFAQYSTHRELKFDK-NKAISDTESVANGSVSNFEVGTQQQPNSVLRTIIENM 717
IQIRGRTLFAQYSTHRELKFDK NKA SDTESVANGSVSNFEVGTQQQPNSVLRTIIENM
Sbjct: 177 IQIRGRTLFAQYSTHRELKFDKSNKATSDTESVANGSVSNFEVGTQQQPNSVLRTIIENM 236
Query: 718 MFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCC 897
MFPVSL+VL+QLF RYGKVLRIITFNKNNTFQAL+QMSEANSAQLAKQGLENQNVYNGCC
Sbjct: 237 MFPVSLEVLHQLFARYGKVLRIITFNKNNTFQALIQMSEANSAQLAKQGLENQNVYNGCC 296
Query: 898 TLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMS-IPGLQNLIPANPYNFA 1074
TLRIDYSKLSTLNVKYNNDKSRDYTNPNLP GEMTLEQ IA+S IPGLQNLIP NPYNFA
Sbjct: 297 TLRIDYSKLSTLNVKYNNDKSRDYTNPNLPPGEMTLEQQIAISTIPGLQNLIPTNPYNFA 356
Query: 1075 FGANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYLNPLGLTSANLAPSISSMRFPMIN 1254
FGANP PYLNPLGL SANLA SI +MRFPM+N
Sbjct: 357 FGANPATTFLTNQLATATAAASDSANAAALA---PYLNPLGLGSANLATSIPAMRFPMLN 413
Query: 1255 LTPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHL 1434
LTPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHL
Sbjct: 414 LTPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHL 473
Query: 1435 DKVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCA 1614
DKVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCA
Sbjct: 474 DKVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCA 533
Query: 1615 TLHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNH 1794
TLHLSNIP +VSE+KLKEMF EAG+AVKAFKFFPKDHKMALCQLEDIETAIDALI MHNH
Sbjct: 534 TLHLSNIPATVSEDKLKEMFLEAGYAVKAFKFFPKDHKMALCQLEDIETAIDALIKMHNH 593
Query: 1795 KLAENAHLRVSFSKSGI 1845
KLAENAHLRVSFSKSGI
Sbjct: 594 KLAENAHLRVSFSKSGI 610
>gi|25395616|pir||A88299 protein D2089.4 [imported] - Caenorhabditis
elegans
Length = 584
Score = 942 bits (2436), Expect = 0.0
Identities = 490/613 (79%), Positives = 490/613 (79%)
Frame = +1
Query: 7 KRGPDDLQLSLRNXXXXXXXXXXXXXXXXXXXXXXXXDSEPKKAKLDPTLYSSQFYTPAM 186
KRGPDDLQLSLRN DSEPKKAKLDPTLYSSQFYTPAM
Sbjct: 23 KRGPDDLQLSLRNGVGGASTTAPGVAAAAYYANVMTADSEPKKAKLDPTLYSSQFYTPAM 82
Query: 187 HHGLMXXXXXXXXXXXXXXXXXXXQLLTGNPITQIQGIQLSTLPQCNSTSAVTSIPVSKV 366
HHGLM QLLTGNPITQIQ V
Sbjct: 83 HHGLMTADASTVAAVTAAANATTAQLLTGNPITQIQ-----------------------V 119
Query: 367 VHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAVPIQ 546
VHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAVPIQ
Sbjct: 120 VHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAVPIQ 179
Query: 547 IRGRTLFAQYSTHRELKFDKNKAISDTESVANGSVSNFEVGTQQQPNSVLRTIIENMMFP 726
SVANGSVSNFEVGTQQQPNSVLRTIIENMMFP
Sbjct: 180 ----------------------------SVANGSVSNFEVGTQQQPNSVLRTIIENMMFP 211
Query: 727 VSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCTLR 906
VSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCTLR
Sbjct: 212 VSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCCTLR 271
Query: 907 IDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPYNFAFGAN 1086
IDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPYNFAFGAN
Sbjct: 272 IDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPYNFAFGAN 331
Query: 1087 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYLNPLGLTSANLAPSISSMRFPMINLTPV 1266
P PYLNPLGLTSANLAPSISSMRFPMINLTPV
Sbjct: 332 PATTFLTTQLAASTAAAAAVNDSANAAALAPYLNPLGLTSANLAPSISSMRFPMINLTPV 391
Query: 1267 ILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVK 1446
ILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVK
Sbjct: 392 ILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVK 451
Query: 1447 WHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHL 1626
WHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHL
Sbjct: 452 WHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHL 511
Query: 1627 SNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAE 1806
SNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAE
Sbjct: 512 SNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAE 571
Query: 1807 NAHLRVSFSKSGI 1845
NAHLRVSFSKSGI
Sbjct: 572 NAHLRVSFSKSGI 584
>gi|25146814|ref|NP_741042.1| human PTB hnRNP homolog PTB-1, human PTB
hnRNP homolog (49.6 kD) (ptb-1) [Caenorhabditis elegans]
gi|20338919|emb|CAD30435.1| Hypothetical protein D2089.4b
[Caenorhabditis elegans]
Length = 453
Score = 751 bits (1939), Expect = 0.0
Identities = 376/406 (92%), Positives = 377/406 (92%)
Frame = +1
Query: 628 ESVANGSVSNFEVGTQQQPNSVLRTIIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNT 807
+SVANGSVSNFEVGTQQQPNSVLRTIIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNT
Sbjct: 48 KSVANGSVSNFEVGTQQQPNSVLRTIIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNT 107
Query: 808 FQALVQMSEANSAQLAKQGLENQNVYNGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLP 987
FQALVQMSEANSAQLAKQGLENQNVYNGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLP
Sbjct: 108 FQALVQMSEANSAQLAKQGLENQNVYNGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLP 167
Query: 988 AGEMTLEQTIAMSIPGLQNLIPANPYNFAFGANPXXXXXXXXXXXXXXXXXXXXXXXXXX 1167
AGEMTLEQTIAMSIPGLQNLIPANPYNFAFGANP
Sbjct: 168 AGEMTLEQTIAMSIPGLQNLIPANPYNFAFGANPATTFLTTQLAASTAAAAAVNDSANAA 227
Query: 1168 XXXPYLNPLGLTSANLAPSISSMRFPMINLTPVILVSNLHEMKVTTDALFTLFGVYGDVM 1347
PYLNPLGLTSANLAPSISSMRFPMINLTPVILVSNLHEMKVTTDALFTLFGVYGDVM
Sbjct: 228 ALAPYLNPLGLTSANLAPSISSMRFPMINLTPVILVSNLHEMKVTTDALFTLFGVYGDVM 287
Query: 1348 RVKILYNKKDNALIQYSEPQQAQLALTHLDKVKWHDRLIRVAPSKHTNVQMPKEGQPDAG 1527
RVKILYNKKDNALIQYSEPQQAQLALTHLDKVKWHDRLIRVAPSKHTNVQMPKEGQPDAG
Sbjct: 288 RVKILYNKKDNALIQYSEPQQAQLALTHLDKVKWHDRLIRVAPSKHTNVQMPKEGQPDAG 347
Query: 1528 LTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFK 1707
LTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFK
Sbjct: 348 LTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFK 407
Query: 1708 FFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSFSKSGI 1845
FFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSFSKSGI
Sbjct: 408 FFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSFSKSGI 453