Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F07A11_5
(2442 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17532901|ref|NP_496481.1| nuclear Pore complex Protein NPP-5,... 1462 0.0
gi|39597237|emb|CAE59465.1| Hypothetical protein CBG02849 [Caeno... 1173 0.0
gi|27694092|gb|AAH43343.1| Nuclear pore complex protein [Homo sa... 67 2e-09
gi|9966881|ref|NP_065134.1| nuclear pore complex protein [Homo s... 67 2e-09
gi|16758682|ref|NP_446282.1| nuclear pore complex protein [Rattu... 62 5e-08
gi|13435556|gb|AAH04655.1| Nup107 protein [Mus musculus] 62 6e-08
gi|29789351|ref|NP_598771.1| nucleoporin 107 [Mus musculus] >gnl... 62 6e-08
gi|50728310|ref|XP_416082.1| PREDICTED: similar to Nuclear pore ... 57 2e-06
gi|39939077|ref|NP_950843.1| DNA polymerase III alpha subunit [O... 39 0.59
gi|46143310|ref|ZP_00135509.2| COG1212: CMP-2-keto-3-deoxyoctulo... 38 1.00
gi|50876375|emb|CAG36215.1| probable glycyl-tRNA synthetase, bet... 38 1.3
gi|46434715|gb|EAK94117.1| hypothetical protein CaO19.2401 [Cand... 37 1.7
gi|48140449|ref|XP_397116.1| similar to ENSANGP00000011553 [Apis... 37 2.2
gi|45657411|ref|YP_001497.1| ADP-heptose synthase [Leptospira in... 37 2.9
gi|15828921|ref|NP_326281.1| ATP SYNTHASE BETA CHAIN [Mycoplasma... 37 2.9
gi|731179|sp|P40944|XYNA_CALSR Endo-1,4-beta-xylanase A precurso... 36 3.8
gi|34189309|gb|AAH17167.1| NUP107 protein [Homo sapiens] 36 3.8
gi|2645425|gb|AAB87379.1| xylanase [Caldicellulosiruptor sacchar... 36 5.0
gi|18977366|ref|NP_578723.1| type II secretion system protein [P... 35 8.5
>gi|17532901|ref|NP_496481.1| nuclear Pore complex Protein NPP-5,
nuclear pore complex protein like (91.8 kD) (npp-5)
[Caenorhabditis elegans]
gi|7498505|pir||T20527 hypothetical protein F07A11.3 - Caenorhabditis
elegans
gi|3875533|emb|CAA91316.1| Hypothetical protein F07A11.3
[Caenorhabditis elegans]
Length = 813
Score = 1462 bits (3785), Expect = 0.0
Identities = 759/813 (93%), Positives = 759/813 (93%)
Frame = -1
Query: 2442 MTDLFASGXXXXXXXXXXXDEIARKNETAFKYTTIFHTNLSEKLYHELCALAFGEFDIPQ 2263
MTDLFASG DEIARKNETAFKYTTIFHTNLSEKLYHELCALAFGEFDIPQ
Sbjct: 1 MTDLFASGDNSSNSFDDSNDEIARKNETAFKYTTIFHTNLSEKLYHELCALAFGEFDIPQ 60
Query: 2262 GQISPLMWTRLHEIYSEVEMQTRKLPAGSNYSASSQKYANEAVQIASVLSIYTALAHEYD 2083
GQISPLMWTRLHEIYSEVEMQTRKLPAGSNYSASSQKYANEAVQIASVLSIYTALAHEYD
Sbjct: 61 GQISPLMWTRLHEIYSEVEMQTRKLPAGSNYSASSQKYANEAVQIASVLSIYTALAHEYD 120
Query: 2082 ETXXXXXXXXXXXXXXEFRRIYALLLWSEKAISEQQYEKGLGDKVRKLEGIKSSRINSMM 1903
ET EFRRIYALLLWSEKAISEQQYEKGLGDKVRKLEGIKSSRINSMM
Sbjct: 121 ETVEVSLLSKLVVEDVEFRRIYALLLWSEKAISEQQYEKGLGDKVRKLEGIKSSRINSMM 180
Query: 1902 ALKRPTFGAANAPKDASLDPDAPGTKEDQALEQMAMNVFFQLIRSGETSKAANLAIDLGM 1723
ALKRPTFGAANAPKDASLDPDAPGTKEDQALEQMAMNVFFQLIRSGETSKAANLAIDLGM
Sbjct: 181 ALKRPTFGAANAPKDASLDPDAPGTKEDQALEQMAMNVFFQLIRSGETSKAANLAIDLGM 240
Query: 1722 GAIGAQLQLHSMLRNPLDIPLEASKQNFGEYKRSRRAKYYQMTQKLIEQSQGSEDDAYWM 1543
GAIGAQLQLHSMLRNPLDIPLEASKQNFGEYKRSRRAKYYQMTQKLIEQSQGSEDDAYWM
Sbjct: 241 GAIGAQLQLHSMLRNPLDIPLEASKQNFGEYKRSRRAKYYQMTQKLIEQSQGSEDDAYWM 300
Query: 1542 LISAIRGNIQPMLKAGKSVIEKVWAYANSAVLARILAAEGAMTQETISTLFNVPLTSKSI 1363
LISAIRGNIQPMLKAGKSVIEKVWAYANSAVLARILAAEGAMTQETISTLFNVPLTSKSI
Sbjct: 301 LISAIRGNIQPMLKAGKSVIEKVWAYANSAVLARILAAEGAMTQETISTLFNVPLTSKSI 360
Query: 1362 LDELRSEADRTKEVYILLRVIDDMLNDDIEDLYKFANETVGEFVPNDKNCQVNMLALDIF 1183
LDELRSEADRTKEVYILLRVIDDMLNDDIEDLYKFANETVGEFVPNDKNCQVNMLALDIF
Sbjct: 361 LDELRSEADRTKEVYILLRVIDDMLNDDIEDLYKFANETVGEFVPNDKNCQVNMLALDIF 420
Query: 1182 FHLVAVSYASGFEPNDDGNAVIILGFDDLRARSGTSSHKKMAAFYSRFLPEDMKLPEIVE 1003
FHLVAVSYASGFEPNDDGNAVIILGFDDLRARSGTSSHKKMAAFYSRFLPEDMKLPEIVE
Sbjct: 421 FHLVAVSYASGFEPNDDGNAVIILGFDDLRARSGTSSHKKMAAFYSRFLPEDMKLPEIVE 480
Query: 1002 TMKAVDSDEEREILAESLKQSDIDFGRCACTLIEQIRKDDKTKVVTLEEQIDHWHWXXXX 823
TMKAVDSDEEREILAESLKQSDIDFGRCACTLIEQIRKDDKTKVVTLEEQIDHWHW
Sbjct: 481 TMKAVDSDEEREILAESLKQSDIDFGRCACTLIEQIRKDDKTKVVTLEEQIDHWHWLLIG 540
Query: 822 XXXXXXXXXXECNRLVRKVMLSTPIDESVIRQIIRKALHFEVPKLLSQAVENEATVLSLI 643
ECNRLVRKVMLSTPIDESVIRQIIRKALHFEVPKLLSQAVENEATVLSLI
Sbjct: 541 GEETALAALEECNRLVRKVMLSTPIDESVIRQIIRKALHFEVPKLLSQAVENEATVLSLI 600
Query: 642 TDGTLFEQKPGSQLAINKIEHAALEFYGLCSFVDVNNFMITIALKLGLMFKYTPITDDEL 463
TDGTLFEQKPGSQLAINKIEHAALEFYGLCSFVDVNNFMITIALKLGLMFKYTPITDDEL
Sbjct: 601 TDGTLFEQKPGSQLAINKIEHAALEFYGLCSFVDVNNFMITIALKLGLMFKYTPITDDEL 660
Query: 462 SMIGGVKRLDNTTAADWEASLRVRARAEQTLREEVLKKRAAEHNTRVGMVQQHLDTVLPM 283
SMIGGVKRLDNTTAADWEASLRVRARAEQTLREEVLKKRAAEHNTRVGMVQQHLDTVLPM
Sbjct: 661 SMIGGVKRLDNTTAADWEASLRVRARAEQTLREEVLKKRAAEHNTRVGMVQQHLDTVLPM 720
Query: 282 LRGLVNNIGVRPEYFLSPRANGDPMRVHRKEIQEIRNLFLPQFFILLAQAAVRLXXXXXX 103
LRGLVNNIGVRPEYFLSPRANGDPMRVHRKEIQEIRNLFLPQFFILLAQAAVRL
Sbjct: 721 LRGLVNNIGVRPEYFLSPRANGDPMRVHRKEIQEIRNLFLPQFFILLAQAAVRLDDTTNF 780
Query: 102 XXXXXXXXXDLGLDQEWMVFIKAFYAELNLKVE 4
DLGLDQEWMVFIKAFYAELNLKVE
Sbjct: 781 NDFFTSFNNDLGLDQEWMVFIKAFYAELNLKVE 813
>gi|39597237|emb|CAE59465.1| Hypothetical protein CBG02849
[Caenorhabditis briggsae]
Length = 812
Score = 1173 bits (3034), Expect = 0.0
Identities = 584/813 (71%), Positives = 678/813 (82%)
Frame = -1
Query: 2442 MTDLFASGXXXXXXXXXXXDEIARKNETAFKYTTIFHTNLSEKLYHELCALAFGEFDIPQ 2263
M+++F++G DE+ RKNETAFKY+ +FHT L EKLY ELCALA GEFDIP+
Sbjct: 1 MSEIFSTGDQSSGSLEDSNDEVRRKNETAFKYSQLFHTTLCEKLYQELCALAIGEFDIPE 60
Query: 2262 GQISPLMWTRLHEIYSEVEMQTRKLPAGSNYSASSQKYANEAVQIASVLSIYTALAHEYD 2083
GQISP+MWTRLHEIYSEVEMQTRKLP G+ YS SQKYANEAVQIAS+LSIYTALAHEYD
Sbjct: 61 GQISPVMWTRLHEIYSEVEMQTRKLPNGAKYSIDSQKYANEAVQIASILSIYTALAHEYD 120
Query: 2082 ETXXXXXXXXXXXXXXEFRRIYALLLWSEKAISEQQYEKGLGDKVRKLEGIKSSRINSMM 1903
ET EFRR+YALLLWSEKAISEQQYE GLGDKVRK+E KS+RINS+M
Sbjct: 121 ETLEVSLLSKLVVDDVEFRRLYALLLWSEKAISEQQYESGLGDKVRKIESTKSNRINSIM 180
Query: 1902 ALKRPTFGAANAPKDASLDPDAPGTKEDQALEQMAMNVFFQLIRSGETSKAANLAIDLGM 1723
LKRPTF +A APKDASLDPDAPGTKEDQ LEQMA FFQL+R GET+KAANLAIDLGM
Sbjct: 181 ILKRPTF-SAGAPKDASLDPDAPGTKEDQTLEQMAYTTFFQLVRCGETTKAANLAIDLGM 239
Query: 1722 GAIGAQLQLHSMLRNPLDIPLEASKQNFGEYKRSRRAKYYQMTQKLIEQSQGSEDDAYWM 1543
AIGAQLQLHSMLRNPLD+PL+ S QNFGE KR+RRAKYY+MTQ+LIE+S GSED+AYW
Sbjct: 240 SAIGAQLQLHSMLRNPLDVPLKVSSQNFGEVKRARRAKYYEMTQRLIEESNGSEDNAYWT 299
Query: 1542 LISAIRGNIQPMLKAGKSVIEKVWAYANSAVLARILAAEGAMTQETISTLFNVPLTSKSI 1363
L+SA+RGNI PMLKA K+VIEKVWAYANSAVLAR+L AEGAM QET++TLFNVPLT+KS+
Sbjct: 300 LVSALRGNIAPMLKASKNVIEKVWAYANSAVLARLLLAEGAMDQETVATLFNVPLTAKSL 359
Query: 1362 LDELRSEADRTKEVYILLRVIDDMLNDDIEDLYKFANETVGEFVPNDKNCQVNMLALDIF 1183
L+ELR+E D +KEVYILLRVIDDMLNDDIEDL+KFANETVGE+VP+DKNC+VN+LALDIF
Sbjct: 360 LEELRTEYDGSKEVYILLRVIDDMLNDDIEDLFKFANETVGEYVPDDKNCEVNVLALDIF 419
Query: 1182 FHLVAVSYASGFEPNDDGNAVIILGFDDLRARSGTSSHKKMAAFYSRFLPEDMKLPEIVE 1003
FHLVAV+YASGFE NDDGNAVI+LGFDDLR RSG++SHK+MAAFYSRFLPEDMK+PEIVE
Sbjct: 420 FHLVAVAYASGFESNDDGNAVIVLGFDDLRVRSGSTSHKRMAAFYSRFLPEDMKIPEIVE 479
Query: 1002 TMKAVDSDEEREILAESLKQSDIDFGRCACTLIEQIRKDDKTKVVTLEEQIDHWHWXXXX 823
TMK V+S++EREI AESLKQSDI+FGRCACTLIEQIRKDD+ K+V+LE QIDHW+W
Sbjct: 480 TMKMVESEKEREIFAESLKQSDINFGRCACTLIEQIRKDDEAKIVSLEAQIDHWNWLLVG 539
Query: 822 XXXXXXXXXXECNRLVRKVMLSTPIDESVIRQIIRKALHFEVPKLLSQAVENEATVLSLI 643
ECNRL+RK+ML P+DE V+RQIIR+A+ E+PK LSQAV N T+LSLI
Sbjct: 540 GEETALAALEECNRLLRKIMLKKPMDEPVVRQIIRRAIQMELPKTLSQAVVNGTTLLSLI 599
Query: 642 TDGTLFEQKPGSQLAINKIEHAALEFYGLCSFVDVNNFMITIALKLGLMFKYTPITDDEL 463
DGTL+EQ+ GSQLAI+K+EHAA EFY LCS +DVNNF+ITIALKL LM KY+PITDDEL
Sbjct: 600 KDGTLYEQEKGSQLAIDKVEHAAYEFYALCSILDVNNFIITIALKLNLMVKYSPITDDEL 659
Query: 462 SMIGGVKRLDNTTAADWEASLRVRARAEQTLREEVLKKRAAEHNTRVGMVQQHLDTVLPM 283
+ +GG KRLDN A DWEASLRVRARAEQT RE++ KK AA+HNTR+GMV QH DTVLP+
Sbjct: 660 AAMGGGKRLDNVNALDWEASLRVRARAEQTFREDLCKKTAADHNTRLGMVHQHFDTVLPI 719
Query: 282 LRGLVNNIGVRPEYFLSPRANGDPMRVHRKEIQEIRNLFLPQFFILLAQAAVRLXXXXXX 103
RGLV NIG+RPE+FLSPR N DPMR HR+EIQ +RN F+ QFF+ LA+AA +L
Sbjct: 720 FRGLVQNIGIRPEFFLSPRTNSDPMRDHRREIQMLRNHFITQFFLTLAEAAAKLNETTRF 779
Query: 102 XXXXXXXXXDLGLDQEWMVFIKAFYAELNLKVE 4
D G+DQ + IK +YA++N+K++
Sbjct: 780 QEVVTSFNDDFGIDQSLVTTIKGYYAKVNIKLD 812