Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= F11H8_2
         (849 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17552762|ref|NP_498533.1| COLlagen structural gene (col-8) [C...   214   2e-54
gi|115404|sp|P18833|CC08_CAEEL Cuticle collagen 8 precursor >gnl...   211   1e-53
gi|39593952|emb|CAE70062.1| Hypothetical protein CBG16497 [Caeno...   179   7e-44
gi|22096340|sp|P18835|CC19_CAEEL Cuticle collagen 19 precursor >...   129   1e-28
gi|39592587|emb|CAE63664.1| Hypothetical protein CBG08166 [Caeno...   129   1e-28
gi|17560252|ref|NP_504525.1| COLlagen structural gene (col-140) ...   103   5e-21
gi|39593091|emb|CAE64560.1| Hypothetical protein CBG09310 [Caeno...   102   1e-20
gi|687636|gb|AAA62505.1| collagen [Caenorhabditis elegans]             99   2e-19
gi|84432|pir||JS0170 collagen col-19 - Caenorhabditis elegans >g...    94   4e-18
gi|32566102|ref|NP_508100.2| COLlagen structural gene (col-19) [...    90   5e-17
gi|17567005|ref|NP_510248.1| COLlagen structural gene (col-184) ...    56   1e-06
gi|39596526|emb|CAE63145.1| Hypothetical protein CBG07447 [Caeno...    53   7e-06
gi|17532625|ref|NP_495810.1| COLlagen structural gene (col-38) [...    53   1e-05
gi|17551258|ref|NP_510522.1| COLlagen structural gene (col-41) [...    53   1e-05
gi|39596631|emb|CAE63250.1| Hypothetical protein CBG07618 [Caeno...    52   1e-05
gi|39587116|emb|CAE57583.1| Hypothetical protein CBG00562 [Caeno...    52   2e-05
gi|39589676|emb|CAE66911.1| Hypothetical protein CBG12296 [Caeno...    50   6e-05
gi|39589674|emb|CAE66909.1| Hypothetical protein CBG12293 [Caeno...    50   6e-05
gi|17550832|ref|NP_509555.1| COLlagen structural gene (28.5 kD) ...    49   1e-04
gi|17552372|ref|NP_498729.1| COLlagen structural gene (30.6 kD) ...    47   4e-04
gi|39596219|emb|CAE69856.1| Hypothetical protein CBG16184 [Caeno...    47   5e-04
gi|39597389|emb|CAE59618.1| Hypothetical protein CBG03027 [Caeno...    45   0.003
gi|17531719|ref|NP_496310.1| COLlagen structural gene (31.3 kD) ...    41   0.029
gi|39586115|emb|CAE69191.1| Hypothetical protein CBG15226 [Caeno...    41   0.029
gi|17505581|ref|NP_492090.1| COLlagen structural gene (col-7) [C...    41   0.037
gi|17505583|ref|NP_492091.1| COLlagen structural gene (col-62) [...    41   0.037
gi|17508163|ref|NP_492936.1| COLlagen structural gene (col-65) [...    41   0.037
gi|39580427|emb|CAE69309.1| Hypothetical protein CBG15367 [Caeno...    38   0.24
gi|25148392|ref|NP_741318.1| COLlagen structural gene (28.5 kD) ...    38   0.32
gi|39586197|emb|CAE66608.1| Hypothetical protein CBG11934 [Caeno...    37   0.41
gi|39595564|emb|CAE67065.1| Hypothetical protein CBG12473 [Caeno...    37   0.71
gi|17532627|ref|NP_496309.1| COLlagen structural gene (31.6 kD) ...    36   0.92
gi|39585657|emb|CAE59859.1| Hypothetical protein CBG03334 [Caeno...    36   0.92
gi|39579123|emb|CAE56688.1| Hypothetical protein CBG24466 [Caeno...    36   1.2
gi|17564310|ref|NP_504735.1| COLlagen structural gene (col-141) ...    36   1.2
gi|39585958|emb|CAE68247.1| Hypothetical protein CBG13922 [Caeno...    35   1.6
gi|17555486|ref|NP_497131.1| COLlagen structural gene (29.1 kD) ...    35   1.6
gi|17511053|ref|NP_492245.1| COLlagen structural gene (37.4 kD) ...    35   2.1
gi|17531717|ref|NP_496308.1| COLlagen structural gene (col-79) [...    35   2.7
gi|17539720|ref|NP_502372.1| COLlagen structural gene (28.8 kD) ...    35   2.7
gi|687634|gb|AAA62504.1| collagen                                      34   3.5
gi|32563747|ref|NP_494878.2| COLlagen structural gene (col-17) [...    34   3.5
gi|39594639|emb|CAE72217.1| Hypothetical protein CBG19328 [Caeno...    33   6.0
gi|39594640|emb|CAE72218.1| Hypothetical protein CBG19329 [Caeno...    33   6.0
gi|34850007|gb|AAQ82845.1| Collagen protein 19, isoform b [Caeno...    33   6.0
gi|50549445|ref|XP_502193.1| hypothetical protein [Yarrowia lipo...    33   6.0
gi|39592067|emb|CAE75287.1| Hypothetical protein CBG23255 [Caeno...    33   6.0
gi|17559154|ref|NP_505981.1| COLlagen structural gene (33.2 kD) ...    33   6.0
gi|39594380|emb|CAE71958.1| Hypothetical protein CBG19027 [Caeno...    33   7.8


>gi|17552762|ref|NP_498533.1| COLlagen structural gene (col-8)
           [Caenorhabditis elegans]
 gi|7446021|pir||T16036 cuticle collagen col-8 - Caenorhabditis
           elegans
 gi|1055196|gb|AAA81159.1| Collagen protein 8 [Caenorhabditis
           elegans]
          Length = 282

 Score =  214 bits (545), Expect = 2e-54
 Identities = 114/160 (71%), Positives = 114/160 (71%)
 Frame = -1

Query: 849 MLVCVFVALYTMMGLLTDIKQLQSDFDDEMFEFRAITKDTWQRIVTKHTYPGGVDEETIE 670
           MLVCVFVALYTMMGLLTDIKQLQSDFDDEMFEFRAITKDTWQRIVTKHTYPGGVDEETIE
Sbjct: 1   MLVCVFVALYTMMGLLTDIKQLQSDFDDEMFEFRAITKDTWQRIVTKHTYPGGVDEETIE 60

Query: 669 SHPPTFETLFGTRKARQAYPEQCNCGPKSXXXXXXXXXXXXXXXXXXXXXXXGDDGKPGA 490
           SHPPTFETLFGTRKARQAYPEQCNCGPKS                       GDDGKPGA
Sbjct: 61  SHPPTFETLFGTRKARQAYPEQCNCGPKSEGCPAGPPGPPGEGGQSGEPGHDGDDGKPGA 120

Query: 489 PGVIVAITHDXXXXXXXXXXXXXXXXXXXXXXXPAGPAGD 370
           PGVIVAITHD                       PAGPAGD
Sbjct: 121 PGVIVAITHDIPGGCIKCPPGRPGPRGPSGLVGPAGPAGD 160



 Score = 43.5 bits (101), Expect = 0.006
 Identities = 20/30 (66%), Positives = 20/30 (66%)
 Frame = -1

Query: 93  KSGTCXXXXXXXXXXPDAGYCPCPGRSYKA 4
           KSGTC          PDAGYCPCPGRSYKA
Sbjct: 253 KSGTCGEHGGPGEPGPDAGYCPCPGRSYKA 282




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