Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F12F6_3
(1356 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17539782|ref|NP_502177.1| polymerase delta (50.4 kD) (4M324) ... 843 0.0
gi|39593807|emb|CAE62100.1| Hypothetical protein CBG06130 [Caeno... 688 0.0
gi|28279582|gb|AAH45410.1| Zgc:55633 [Danio rerio] 171 5e-41
gi|13431459|sp|O93610|DPD2_XENLA DNA polymerase delta subunit 2 ... 169 1e-40
gi|47086937|ref|NP_998468.1| polymerase (DNA directed), delta 2,... 169 2e-40
gi|49522345|gb|AAH75341.1| Unknown (protein for MGC:89026) [Xeno... 169 2e-40
gi|27806075|ref|NP_776853.1| polymerase (DNA directed), delta 2,... 158 3e-37
gi|13097135|gb|AAH03342.1| Polymerase (DNA directed), delta 2, r... 157 4e-37
gi|6679413|ref|NP_032920.1| polymerase (DNA directed), delta 2, ... 157 6e-37
gi|5453924|ref|NP_006221.1| polymerase (DNA directed), delta 2, ... 157 7e-37
gi|21358653|ref|NP_647659.1| CG12018-PA [Drosophila melanogaster... 149 2e-34
gi|21064173|gb|AAM29316.1| AT27586p [Drosophila melanogaster] 148 3e-34
gi|6322465|ref|NP_012539.1| DNA polymerase III (delta) 55 kDa su... 145 2e-33
gi|1256943|dbj|BAA08859.1| HYS2 [Saccharomyces cerevisiae] 145 3e-33
gi|50285409|ref|XP_445133.1| unnamed protein product [Candida gl... 144 5e-33
gi|28317170|gb|AAD46843.2| HL03874p [Drosophila melanogaster] 138 3e-31
gi|47212927|emb|CAF90299.1| unnamed protein product [Tetraodon n... 138 3e-31
gi|23488516|gb|EAA21338.1| hypothetical protein [Plasmodium yoel... 132 1e-29
gi|45184692|ref|NP_982410.1| AAL132Cp [Eremothecium gossypii] >g... 130 7e-29
gi|13431489|sp|Q9LRE5|DPD2_ORYSA DNA polymerase delta small subu... 125 3e-27
gi|6063533|dbj|BAA85393.1| ESTs AU068594(C30493),D24468(R2008) c... 122 2e-26
gi|19115318|ref|NP_594406.1| dna polymerase delta small subunit ... 120 7e-26
gi|13431449|sp|O48520|DPD2_ARATH DNA polymerase delta small subu... 119 1e-25
gi|42571181|ref|NP_973664.1| DNA polymerase delta small subunit-... 118 3e-25
gi|31237709|ref|XP_319657.1| ENSANGP00000013916 [Anopheles gambi... 117 6e-25
gi|42569857|ref|NP_181742.2| DNA polymerase delta small subunit-... 115 2e-24
gi|50427629|ref|XP_462427.1| unnamed protein product [Debaryomyc... 111 5e-23
gi|46125573|ref|XP_387340.1| hypothetical protein FG07164.1 [Gib... 107 9e-22
gi|50311455|ref|XP_455752.1| unnamed protein product [Kluyveromy... 106 1e-21
gi|46443811|gb|EAL03090.1| hypothetical protein CaO19.3960 [Cand... 106 1e-21
gi|38108464|gb|EAA54474.1| hypothetical protein MG02459.4 [Magna... 105 2e-21
gi|50549919|ref|XP_502431.1| hypothetical protein [Yarrowia lipo... 104 4e-21
gi|23306120|gb|AAN17387.1| Putataive DNA polymerase delta small ... 103 7e-21
gi|34879052|ref|XP_214079.2| similar to polymerase (DNA directed... 102 2e-20
gi|46228503|gb|EAK89373.1| DNA polymerase delta2, inactive calci... 101 4e-20
gi|16805172|ref|NP_473200.1| DNA polymerase delta small subunit,... 101 4e-20
gi|32404904|ref|XP_323065.1| hypothetical protein [Neurospora cr... 99 2e-19
gi|50259648|gb|EAL22318.1| hypothetical protein CNBB4930 [Crypto... 94 1e-17
gi|49093066|ref|XP_407994.1| hypothetical protein AN3857.2 [Aspe... 92 2e-17
gi|49077470|ref|XP_402591.1| hypothetical protein UM04976.1 [Ust... 91 5e-17
gi|29249271|gb|EAA40786.1| GLP_29_12016_13368 [Giardia lamblia A... 51 6e-05
gi|19173199|ref|NP_597002.1| DNA POLYMERASE DELTA SMALL SUBUNIT ... 51 7e-05
gi|48477541|ref|YP_023247.1| DNA polymerase II small subunit [Pi... 40 0.13
gi|32563802|ref|NP_494925.2| neuronal SYmmetry defect NSY-1, Enh... 35 0.60
gi|7504728|pir||T16511 hypothetical protein F59A6.1 - Caenorhabd... 35 0.60
gi|32420939|ref|XP_330913.1| predicted protein [Neurospora crass... 37 1.1
gi|39596795|emb|CAE59022.1| Hypothetical protein CBG02299 [Caeno... 35 4.1
gi|38346152|emb|CAD40672.2| OSJNBb0118P14.12 [Oryza sativa (japo... 34 7.1
gi|15239251|ref|NP_196199.1| expressed protein [Arabidopsis thal... 34 7.1
gi|46913063|emb|CAG19852.1| conserved hypothetical protein [Phot... 34 7.1
gi|38569177|emb|CAE05367.3| OJ000315_02.12 [Oryza sativa (japoni... 34 7.1
gi|22971891|ref|ZP_00018806.1| hypothetical protein [Chloroflexu... 34 9.2
>gi|17539782|ref|NP_502177.1| polymerase delta (50.4 kD) (4M324)
[Caenorhabditis elegans]
gi|13431470|sp|Q19366|DPD2_CAEEL Preobable DNA polymerase delta small
subunit
gi|7498961|pir||T20798 hypothetical protein F12F6.7 - Caenorhabditis
elegans
gi|3875793|emb|CAA97785.1| Hypothetical protein F12F6.7
[Caenorhabditis elegans]
Length = 451
Score = 843 bits (2179), Expect = 0.0
Identities = 422/451 (93%), Positives = 422/451 (93%)
Frame = -1
Query: 1356 METAWSNILNYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGK 1177
METAWSNILNYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGK
Sbjct: 1 METAWSNILNYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGK 60
Query: 1176 FTHSQLSDAKQDEEIFVVGVIVKRIAARPSILKSLLNXXXXXXXXXXXXXXXXXXKRYAG 997
FTHSQLSDAKQDEEIFVVGVIVKRIAARPSILKSLLN KRYAG
Sbjct: 61 FTHSQLSDAKQDEEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAG 120
Query: 996 SIEDRIELESDKQTVRLEGNISMDECATGCCXXXXXXXXXXXVFHVNRLVWPSVKVPKKV 817
SIEDRIELESDKQTVRLEGNISMDECATGCC VFHVNRLVWPSVKVPKKV
Sbjct: 121 SIEDRIELESDKQTVRLEGNISMDECATGCCVGVLGKLGKEGVFHVNRLVWPSVKVPKKV 180
Query: 816 AVDGTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQCPPIDRLVVIGPLVET 637
AVDGTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQCPPIDRLVVIGPLVET
Sbjct: 181 AVDGTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQCPPIDRLVVIGPLVET 240
Query: 636 KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSM 457
KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSM
Sbjct: 241 KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSM 300
Query: 456 WPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADA 277
WPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADA
Sbjct: 301 WPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADA 360
Query: 276 IENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPIDGSNCLV 97
IENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPIDGSNCLV
Sbjct: 361 IENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPIDGSNCLV 420
Query: 96 VCLPKFSKTRVACFLNLSDLSLKWQNFDHQF 4
VCLPKFSKTRVACFLNLSDLSLKWQNFDHQF
Sbjct: 421 VCLPKFSKTRVACFLNLSDLSLKWQNFDHQF 451
>gi|39593807|emb|CAE62100.1| Hypothetical protein CBG06130
[Caenorhabditis briggsae]
Length = 450
Score = 688 bits (1776), Expect = 0.0
Identities = 335/453 (73%), Positives = 379/453 (82%), Gaps = 2/453 (0%)
Frame = -1
Query: 1356 METAWSNILNYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGK 1177
M AWSN LNYKNVSDRY+LTE+DKKGAF RQYFE+YEAR+KELKPRIL+NAER IGKGK
Sbjct: 1 MAAAWSNTLNYKNVSDRYVLTEEDKKGAFARQYFEIYEARVKELKPRILDNAERVIGKGK 60
Query: 1176 FTHSQLSDAKQDEEIFVVGVIVKRIAARPSILKSLLNXXXXXXXXXXXXXXXXXXKRYAG 997
F H LSDAKQDEEIF+ GVIVKR+ ARPSILKSLL+ RYAG
Sbjct: 61 FKHVLLSDAKQDEEIFITGVIVKRVLARPSILKSLLSEDKVAYDNVDDGEDDVK--RYAG 118
Query: 996 SIEDRIELESDKQTVRLEGNISMDECATGCCXXXXXXXXXXXVFHVNRLVWPSVKVPKKV 817
S EDRIELES+KQTVRLEG ISM++CATGCC VFHV+RLVWP+ V KK
Sbjct: 119 SSEDRIELESEKQTVRLEGAISMEDCATGCCVGVLGKLGKEGVFHVSRLVWPAANVTKKA 178
Query: 816 AVDGTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQCPPIDRLVVIGPLVET 637
+GT+ F+SGLDL+GD+E DRLTISGLEFM+DWMN G E+QCP IDR+V+IGP VET
Sbjct: 179 TTEGTLVFISGLDLSGDIEQDRLTISGLEFMSDWMNTN-GEEHQCPSIDRVVMIGPFVET 237
Query: 636 KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSM 457
KSNGCDVQSVVRTLTLSR E+ SS SLITVDK+I+SI+EK LVNT+DVTP VGDPCSSM
Sbjct: 238 KSNGCDVQSVVRTLTLSRPERQSSAKSLITVDKLISSISEKLLVNTIDVTPAVGDPCSSM 297
Query: 456 WPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADA 277
WPLPPIHRVCLPRCGM++KKVNLVTNPYEFEV+GLR+MTMSGENV+ELLRTS KW+GAD
Sbjct: 298 WPLPPIHRVCLPRCGMNEKKVNLVTNPYEFEVDGLRIMTMSGENVTELLRTSHKWSGADV 357
Query: 276 IENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPIDG--SNC 103
+ N++KWQH+APNCPDTLDAFP+AERDPL+M TPHVIICGNQP AE R +DG ++C
Sbjct: 358 LSNLVKWQHIAPNCPDTLDAFPIAERDPLVMSSTPHVIICGNQPQAEVRRFSVDGTDASC 417
Query: 102 LVVCLPKFSKTRVACFLNLSDLSLKWQNFDHQF 4
L+VCLPKFSKTRVACFL+LSDLSLKWQNFDHQF
Sbjct: 418 LLVCLPKFSKTRVACFLDLSDLSLKWQNFDHQF 450