Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= F12F6_3
         (1356 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17539782|ref|NP_502177.1| polymerase delta (50.4 kD) (4M324) ...   843   0.0
gi|39593807|emb|CAE62100.1| Hypothetical protein CBG06130 [Caeno...   688   0.0
gi|28279582|gb|AAH45410.1| Zgc:55633 [Danio rerio]                    171   5e-41
gi|13431459|sp|O93610|DPD2_XENLA DNA polymerase delta subunit 2 ...   169   1e-40
gi|47086937|ref|NP_998468.1| polymerase (DNA directed), delta 2,...   169   2e-40
gi|49522345|gb|AAH75341.1| Unknown (protein for MGC:89026) [Xeno...   169   2e-40
gi|27806075|ref|NP_776853.1| polymerase (DNA directed), delta 2,...   158   3e-37
gi|13097135|gb|AAH03342.1| Polymerase (DNA directed), delta 2, r...   157   4e-37
gi|6679413|ref|NP_032920.1| polymerase (DNA directed), delta 2, ...   157   6e-37
gi|5453924|ref|NP_006221.1| polymerase (DNA directed), delta 2, ...   157   7e-37
gi|21358653|ref|NP_647659.1| CG12018-PA [Drosophila melanogaster...   149   2e-34
gi|21064173|gb|AAM29316.1| AT27586p [Drosophila melanogaster]         148   3e-34
gi|6322465|ref|NP_012539.1| DNA polymerase III (delta) 55 kDa su...   145   2e-33
gi|1256943|dbj|BAA08859.1| HYS2 [Saccharomyces cerevisiae]            145   3e-33
gi|50285409|ref|XP_445133.1| unnamed protein product [Candida gl...   144   5e-33
gi|28317170|gb|AAD46843.2| HL03874p [Drosophila melanogaster]         138   3e-31
gi|47212927|emb|CAF90299.1| unnamed protein product [Tetraodon n...   138   3e-31
gi|23488516|gb|EAA21338.1| hypothetical protein [Plasmodium yoel...   132   1e-29
gi|45184692|ref|NP_982410.1| AAL132Cp [Eremothecium gossypii] >g...   130   7e-29
gi|13431489|sp|Q9LRE5|DPD2_ORYSA DNA polymerase delta small subu...   125   3e-27
gi|6063533|dbj|BAA85393.1| ESTs AU068594(C30493),D24468(R2008) c...   122   2e-26
gi|19115318|ref|NP_594406.1| dna polymerase delta small subunit ...   120   7e-26
gi|13431449|sp|O48520|DPD2_ARATH DNA polymerase delta small subu...   119   1e-25
gi|42571181|ref|NP_973664.1| DNA polymerase delta small subunit-...   118   3e-25
gi|31237709|ref|XP_319657.1| ENSANGP00000013916 [Anopheles gambi...   117   6e-25
gi|42569857|ref|NP_181742.2| DNA polymerase delta small subunit-...   115   2e-24
gi|50427629|ref|XP_462427.1| unnamed protein product [Debaryomyc...   111   5e-23
gi|46125573|ref|XP_387340.1| hypothetical protein FG07164.1 [Gib...   107   9e-22
gi|50311455|ref|XP_455752.1| unnamed protein product [Kluyveromy...   106   1e-21
gi|46443811|gb|EAL03090.1| hypothetical protein CaO19.3960 [Cand...   106   1e-21
gi|38108464|gb|EAA54474.1| hypothetical protein MG02459.4 [Magna...   105   2e-21
gi|50549919|ref|XP_502431.1| hypothetical protein [Yarrowia lipo...   104   4e-21
gi|23306120|gb|AAN17387.1| Putataive DNA polymerase delta small ...   103   7e-21
gi|34879052|ref|XP_214079.2| similar to polymerase (DNA directed...   102   2e-20
gi|46228503|gb|EAK89373.1| DNA polymerase delta2, inactive calci...   101   4e-20
gi|16805172|ref|NP_473200.1| DNA polymerase delta small subunit,...   101   4e-20
gi|32404904|ref|XP_323065.1| hypothetical protein [Neurospora cr...    99   2e-19
gi|50259648|gb|EAL22318.1| hypothetical protein CNBB4930 [Crypto...    94   1e-17
gi|49093066|ref|XP_407994.1| hypothetical protein AN3857.2 [Aspe...    92   2e-17
gi|49077470|ref|XP_402591.1| hypothetical protein UM04976.1 [Ust...    91   5e-17
gi|29249271|gb|EAA40786.1| GLP_29_12016_13368 [Giardia lamblia A...    51   6e-05
gi|19173199|ref|NP_597002.1| DNA POLYMERASE DELTA SMALL SUBUNIT ...    51   7e-05
gi|48477541|ref|YP_023247.1| DNA polymerase II small subunit [Pi...    40   0.13
gi|32563802|ref|NP_494925.2| neuronal SYmmetry defect NSY-1, Enh...    35   0.60
gi|7504728|pir||T16511 hypothetical protein F59A6.1 - Caenorhabd...    35   0.60
gi|32420939|ref|XP_330913.1| predicted protein [Neurospora crass...    37   1.1
gi|39596795|emb|CAE59022.1| Hypothetical protein CBG02299 [Caeno...    35   4.1
gi|38346152|emb|CAD40672.2| OSJNBb0118P14.12 [Oryza sativa (japo...    34   7.1
gi|15239251|ref|NP_196199.1| expressed protein [Arabidopsis thal...    34   7.1
gi|46913063|emb|CAG19852.1| conserved hypothetical protein [Phot...    34   7.1
gi|38569177|emb|CAE05367.3| OJ000315_02.12 [Oryza sativa (japoni...    34   7.1
gi|22971891|ref|ZP_00018806.1| hypothetical protein [Chloroflexu...    34   9.2


>gi|17539782|ref|NP_502177.1| polymerase delta (50.4 kD) (4M324)
            [Caenorhabditis elegans]
 gi|13431470|sp|Q19366|DPD2_CAEEL Preobable DNA polymerase delta small
            subunit
 gi|7498961|pir||T20798 hypothetical protein F12F6.7 - Caenorhabditis
            elegans
 gi|3875793|emb|CAA97785.1| Hypothetical protein F12F6.7
            [Caenorhabditis elegans]
          Length = 451

 Score =  843 bits (2179), Expect = 0.0
 Identities = 422/451 (93%), Positives = 422/451 (93%)
 Frame = -1

Query: 1356 METAWSNILNYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGK 1177
            METAWSNILNYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGK
Sbjct: 1    METAWSNILNYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGK 60

Query: 1176 FTHSQLSDAKQDEEIFVVGVIVKRIAARPSILKSLLNXXXXXXXXXXXXXXXXXXKRYAG 997
            FTHSQLSDAKQDEEIFVVGVIVKRIAARPSILKSLLN                  KRYAG
Sbjct: 61   FTHSQLSDAKQDEEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAG 120

Query: 996  SIEDRIELESDKQTVRLEGNISMDECATGCCXXXXXXXXXXXVFHVNRLVWPSVKVPKKV 817
            SIEDRIELESDKQTVRLEGNISMDECATGCC           VFHVNRLVWPSVKVPKKV
Sbjct: 121  SIEDRIELESDKQTVRLEGNISMDECATGCCVGVLGKLGKEGVFHVNRLVWPSVKVPKKV 180

Query: 816  AVDGTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQCPPIDRLVVIGPLVET 637
            AVDGTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQCPPIDRLVVIGPLVET
Sbjct: 181  AVDGTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQCPPIDRLVVIGPLVET 240

Query: 636  KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSM 457
            KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSM
Sbjct: 241  KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSM 300

Query: 456  WPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADA 277
            WPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADA
Sbjct: 301  WPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADA 360

Query: 276  IENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPIDGSNCLV 97
            IENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPIDGSNCLV
Sbjct: 361  IENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPIDGSNCLV 420

Query: 96   VCLPKFSKTRVACFLNLSDLSLKWQNFDHQF 4
            VCLPKFSKTRVACFLNLSDLSLKWQNFDHQF
Sbjct: 421  VCLPKFSKTRVACFLNLSDLSLKWQNFDHQF 451


>gi|39593807|emb|CAE62100.1| Hypothetical protein CBG06130
            [Caenorhabditis briggsae]
          Length = 450

 Score =  688 bits (1776), Expect = 0.0
 Identities = 335/453 (73%), Positives = 379/453 (82%), Gaps = 2/453 (0%)
 Frame = -1

Query: 1356 METAWSNILNYKNVSDRYILTEKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGK 1177
            M  AWSN LNYKNVSDRY+LTE+DKKGAF RQYFE+YEAR+KELKPRIL+NAER IGKGK
Sbjct: 1    MAAAWSNTLNYKNVSDRYVLTEEDKKGAFARQYFEIYEARVKELKPRILDNAERVIGKGK 60

Query: 1176 FTHSQLSDAKQDEEIFVVGVIVKRIAARPSILKSLLNXXXXXXXXXXXXXXXXXXKRYAG 997
            F H  LSDAKQDEEIF+ GVIVKR+ ARPSILKSLL+                   RYAG
Sbjct: 61   FKHVLLSDAKQDEEIFITGVIVKRVLARPSILKSLLSEDKVAYDNVDDGEDDVK--RYAG 118

Query: 996  SIEDRIELESDKQTVRLEGNISMDECATGCCXXXXXXXXXXXVFHVNRLVWPSVKVPKKV 817
            S EDRIELES+KQTVRLEG ISM++CATGCC           VFHV+RLVWP+  V KK
Sbjct: 119  SSEDRIELESEKQTVRLEGAISMEDCATGCCVGVLGKLGKEGVFHVSRLVWPAANVTKKA 178

Query: 816  AVDGTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQCPPIDRLVVIGPLVET 637
              +GT+ F+SGLDL+GD+E DRLTISGLEFM+DWMN   G E+QCP IDR+V+IGP VET
Sbjct: 179  TTEGTLVFISGLDLSGDIEQDRLTISGLEFMSDWMNTN-GEEHQCPSIDRVVMIGPFVET 237

Query: 636  KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSM 457
            KSNGCDVQSVVRTLTLSR E+ SS  SLITVDK+I+SI+EK LVNT+DVTP VGDPCSSM
Sbjct: 238  KSNGCDVQSVVRTLTLSRPERQSSAKSLITVDKLISSISEKLLVNTIDVTPAVGDPCSSM 297

Query: 456  WPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADA 277
            WPLPPIHRVCLPRCGM++KKVNLVTNPYEFEV+GLR+MTMSGENV+ELLRTS KW+GAD
Sbjct: 298  WPLPPIHRVCLPRCGMNEKKVNLVTNPYEFEVDGLRIMTMSGENVTELLRTSHKWSGADV 357

Query: 276  IENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPIDG--SNC 103
            + N++KWQH+APNCPDTLDAFP+AERDPL+M  TPHVIICGNQP AE R   +DG  ++C
Sbjct: 358  LSNLVKWQHIAPNCPDTLDAFPIAERDPLVMSSTPHVIICGNQPQAEVRRFSVDGTDASC 417

Query: 102  LVVCLPKFSKTRVACFLNLSDLSLKWQNFDHQF 4
            L+VCLPKFSKTRVACFL+LSDLSLKWQNFDHQF
Sbjct: 418  LLVCLPKFSKTRVACFLDLSDLSLKWQNFDHQF 450




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