Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F26A3_4
(4806 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17508703|ref|NP_492131.1| RNA-dependent RNA polymerase Family... 3184 0.0
gi|7499876|pir||T21381 hypothetical protein F26A3.3 - Caenorhabd... 3172 0.0
gi|17508365|ref|NP_493057.1| RNA-dependent RNA polymerase Family... 2103 0.0
gi|39581291|emb|CAE72312.1| Hypothetical protein CBG19448 [Caeno... 1942 0.0
gi|17506499|ref|NP_492132.1| RNA-directed RNA polymerase related... 1857 0.0
gi|39581073|emb|CAE57375.1| Hypothetical protein CBG00321 [Caeno... 1826 0.0
gi|7505900|pir||T23669 hypothetical protein M01G12.12 - Caenorha... 700 0.0
gi|39587252|emb|CAE57720.1| Hypothetical protein CBG00730 [Caeno... 526 e-147
gi|17533045|ref|NP_495713.1| RNA-dependent RNA polymerase Family... 508 e-142
gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase, putat... 324 1e-86
gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabi... 321 1e-85
gi|34913398|ref|NP_918046.1| putative RNA-directed RNA polymeras... 317 2e-84
gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeu... 311 1e-82
gi|47824908|gb|AAT38684.1| RNA-directed RNA polymerase [Solanum ... 309 4e-82
gi|47824981|gb|AAT38754.1| RNA-directed RNA polymerase [Solanum ... 309 5e-82
gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeu... 301 1e-79
gi|47824911|gb|AAT38687.1| RNA-directed RNA polymerase [Solanum ... 298 7e-79
gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia ... 298 9e-79
gi|7489070|pir||T30819 RNA-directed RNA polymerase (EC 2.7.7.48)... 298 9e-79
gi|7489197|pir||T30828 RNA-directed RNA polymerase - common toba... 298 1e-78
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa (japo... 293 2e-77
gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase (SDE1)... 286 4e-75
gi|8248473|gb|AAF74208.1| RNA-dependent RNA polymerase [Arabidop... 283 3e-74
gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase, putat... 280 3e-73
gi|47824924|gb|AAT38699.1| RNA-directed RNA polymerase [Solanum ... 265 1e-68
gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like prot... 255 6e-66
gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidop... 251 1e-64
gi|48057592|gb|AAT39936.1| putative RNA-directed RNA polymerase ... 251 2e-64
gi|47824978|gb|AAT38751.1| RNA-directed RNA polymerase [Solanum ... 239 5e-61
gi|38100368|gb|EAA47505.1| hypothetical protein MG02748.4 [Magna... 238 1e-60
gi|19114207|ref|NP_593295.1| putative rna-directed rna polymeras... 236 4e-60
gi|17227102|gb|AAL38011.1| putative RNA-dependent RNA polymerase... 231 2e-58
gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gib... 230 3e-58
gi|18656898|gb|AAL78034.1| putative RNA-dependent RNA polymerase... 229 5e-58
gi|38106816|gb|EAA53077.1| hypothetical protein MG06205.4 [Magna... 225 7e-57
gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase... 224 2e-56
gi|32417780|ref|XP_329368.1| hypothetical protein ( (AY029284) s... 214 2e-53
gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gib... 211 2e-52
gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymeras... 199 5e-49
gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymeras... 188 1e-45
gi|32418006|ref|XP_329481.1| hypothetical protein [Neurospora cr... 187 2e-45
gi|49090786|ref|XP_406854.1| hypothetical protein AN2717.2 [Aspe... 185 1e-44
gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Crypto... 181 1e-43
gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gib... 135 1e-29
gi|4768840|gb|AAD29638.1| DosA protein [Dictyostelium discoideum] 130 4e-28
gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete... 92 2e-16
gi|49094932|ref|XP_408927.1| hypothetical protein AN4790.2 [Aspe... 80 6e-13
gi|34447177|dbj|BAC84970.1| RNA-directed RNA Polymerase [Vigna u... 74 3e-11
gi|38107197|gb|EAA53405.1| hypothetical protein MG07682.4 [Magna... 72 1e-10
gi|4138610|emb|CAA09895.1| RNA-directed RNA polymerase [Triticum... 70 7e-10
gi|32414681|ref|XP_327820.1| hypothetical protein ( (AJ133528) R... 66 7e-09
gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gib... 62 1e-07
gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gib... 61 3e-07
gi|21666386|gb|AAM73688.1| RNA dependent RNA polymerase [Giardia... 59 9e-07
gi|15419599|gb|AAK97084.1| RNA-dependent RNA-polymerase [Giardia... 59 9e-07
gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana b... 58 3e-06
gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase family... 57 3e-06
gi|25411942|pir||F84582 hypothetical protein At2g19910 [imported... 56 1e-05
gi|25411946|pir||H84582 hypothetical protein At2g19930 [imported... 54 3e-05
gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase family... 54 3e-05
gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family... 53 8e-05
gi|34903602|ref|NP_913148.1| P0419B01.14 [Oryza sativa (japonica... 49 0.001
gi|34903600|ref|NP_913147.1| P0419B01.13 [Oryza sativa (japonica... 49 0.002
gi|25411944|pir||G84582 hypothetical protein At2g19920 [imported... 48 0.002
gi|34869115|ref|XP_344304.1| similar to RIKEN cDNA 1700001E04 [R... 40 0.72
gi|34869066|ref|XP_229514.2| similar to RIKEN cDNA 1700001E04 [R... 40 0.72
gi|8778553|gb|AAF79561.1| F22G5.37 [Arabidopsis thaliana] 39 0.94
gi|6321531|ref|NP_011608.1| mitochondrial and cytoplasmic valyl-... 39 1.2
gi|173164|gb|AAA35207.1| valyl-tRNA synthetase 39 1.2
gi|25146689|ref|NP_741035.1| receptor-like tyrosine-protein kina... 38 2.1
gi|462445|sp|P34891|KI15_CAEEL Receptor-like tyrosine-protein ki... 38 2.1
gi|25146692|ref|NP_741034.1| receptor-like tyrosine-protein kina... 38 2.1
gi|50307489|ref|XP_453724.1| unnamed protein product [Kluyveromy... 37 3.6
gi|17532277|ref|NP_494866.1| protein kinase and RabGAP/TBC domai... 36 8.0
gi|34869092|ref|XP_344299.1| similar to RIKEN cDNA 1700001E04 [R... 36 8.0
>gi|17508703|ref|NP_492131.1| RNA-dependent RNA polymerase Family
member (186.8 kD) (rrf-1) [Caenorhabditis elegans]
gi|8886070|gb|AAF80368.1| RRF-1 [Caenorhabditis elegans]
gi|14530419|emb|CAC42290.1| Hypothetical protein F26A3.8
[Caenorhabditis elegans]
Length = 1601
Score = 3184 bits (8254), Expect = 0.0
Identities = 1571/1601 (98%), Positives = 1571/1601 (98%)
Frame = -1
Query: 4806 MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCD 4627
MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCD
Sbjct: 1 MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCD 60
Query: 4626 CFFEINFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPL 4447
CFFEINFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPL
Sbjct: 61 CFFEINFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPL 120
Query: 4446 AAIYFGNIQGGTYFNHWQVSFSRENISSRDMLHKIHAEFEFDKTDMITVQFQCFEEKKQK 4267
AAIYFGNIQGGTYFNHWQVSFSRENISSRDMLHKIHAEFEFDKTDMITVQFQCFEEKKQK
Sbjct: 121 AAIYFGNIQGGTYFNHWQVSFSRENISSRDMLHKIHAEFEFDKTDMITVQFQCFEEKKQK 180
Query: 4266 FEDSRKQKVRVNYQLTXXXXXXXXXIVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSF 4087
FEDSRKQKVRVNYQLT IVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSF
Sbjct: 181 FEDSRKQKVRVNYQLTIRRDSIRRIIVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSF 240
Query: 4086 HKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRT 3907
HKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRT
Sbjct: 241 HKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRT 300
Query: 3906 KVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLID 3727
KVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLID
Sbjct: 301 KVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLID 360
Query: 3726 VNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLV 3547
VNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLV
Sbjct: 361 VNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLV 420
Query: 3546 HLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPE 3367
HLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPE
Sbjct: 421 HLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPE 480
Query: 3366 TIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYG 3187
TIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYG
Sbjct: 481 TIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYG 540
Query: 3186 FLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENV 3007
FLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENV
Sbjct: 541 FLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENV 600
Query: 3006 PKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEV 2827
PKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEV
Sbjct: 601 PKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEV 660
Query: 2826 SQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKF 2647
SQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKF
Sbjct: 661 SQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKF 720
Query: 2646 QAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILS 2467
QAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILS
Sbjct: 721 QAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILS 780
Query: 2466 FAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKE 2287
FAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKE
Sbjct: 781 FAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKE 840
Query: 2286 QIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLL 2107
QIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLL
Sbjct: 841 QIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLL 900
Query: 2106 TKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQE 1927
TKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQE
Sbjct: 901 TKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQE 960
Query: 1926 LLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLN 1747
LLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLN
Sbjct: 961 LLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLN 1020
Query: 1746 SRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSP 1567
SRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSP
Sbjct: 1021 SRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSP 1080
Query: 1566 MYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYN 1387
MYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYN
Sbjct: 1081 MYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYN 1140
Query: 1386 GQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRX 1207
GQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFR
Sbjct: 1141 GQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRE 1200
Query: 1206 XXXXXXXXXTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRK 1027
TVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRK
Sbjct: 1201 TFFEEFGGFTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRK 1260
Query: 1026 LSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDH 847
LSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDH
Sbjct: 1261 LSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDH 1320
Query: 846 LITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFAT 667
LITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFAT
Sbjct: 1321 LITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFAT 1380
Query: 666 RQLASADGNAEPFFXXXXXXXXXXXKRDSSRGNIDPLTEKKRSDMMVKFFQFMGCRKFRK 487
RQLASADGNAEPFF KRDSSRGNIDPLTEKKRSDMMVKFFQFMGCRKFRK
Sbjct: 1381 RQLASADGNAEPFFKIIEKEEYEKQKRDSSRGNIDPLTEKKRSDMMVKFFQFMGCRKFRK 1440
Query: 486 MSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAETMDREC 307
MSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAETMDREC
Sbjct: 1441 MSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAETMDREC 1500
Query: 306 EPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSVSGTLE 127
EPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSVSGTLE
Sbjct: 1501 EPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSVSGTLE 1560
Query: 126 SIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF 4
SIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF
Sbjct: 1561 SIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF 1601
>gi|7499876|pir||T21381 hypothetical protein F26A3.3 - Caenorhabditis
elegans
Length = 3228
Score = 3172 bits (8225), Expect = 0.0
Identities = 1571/1619 (97%), Positives = 1571/1619 (97%), Gaps = 18/1619 (1%)
Frame = -1
Query: 4806 MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCD 4627
MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCD
Sbjct: 1610 MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCD 1669
Query: 4626 CFFEINFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPL 4447
CFFEINFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPL
Sbjct: 1670 CFFEINFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPL 1729
Query: 4446 AAIYFGNIQGGTYFNHWQVSFSRENISSRDMLHKIHAEFEFDKTDMITVQFQCFEEKKQK 4267
AAIYFGNIQGGTYFNHWQVSFSRENISSRDMLHKIHAEFEFDKTDMITVQFQCFEEKKQK
Sbjct: 1730 AAIYFGNIQGGTYFNHWQVSFSRENISSRDMLHKIHAEFEFDKTDMITVQFQCFEEKKQK 1789
Query: 4266 FEDSRKQKVRVNYQLTXXXXXXXXXIVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSF 4087
FEDSRKQKVRVNYQLT IVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSF
Sbjct: 1790 FEDSRKQKVRVNYQLTIRRDSIRRIIVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSF 1849
Query: 4086 HKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRT 3907
HKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRT
Sbjct: 1850 HKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRT 1909
Query: 3906 KVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLID 3727
KVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLID
Sbjct: 1910 KVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLID 1969
Query: 3726 VNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLV 3547
VNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLV
Sbjct: 1970 VNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLV 2029
Query: 3546 HLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPE 3367
HLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPE
Sbjct: 2030 HLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPE 2089
Query: 3366 TIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYG 3187
TIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYG
Sbjct: 2090 TIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYG 2149
Query: 3186 FLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENV 3007
FLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENV
Sbjct: 2150 FLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENV 2209
Query: 3006 PKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEV 2827
PKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEV
Sbjct: 2210 PKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEV 2269
Query: 2826 SQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKF 2647
SQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKF
Sbjct: 2270 SQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKF 2329
Query: 2646 QAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILS 2467
QAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILS
Sbjct: 2330 QAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILS 2389
Query: 2466 FAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKE 2287
FAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKE
Sbjct: 2390 FAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKE 2449
Query: 2286 QIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLL 2107
QIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLL
Sbjct: 2450 QIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLL 2509
Query: 2106 TKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQE 1927
TKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQE
Sbjct: 2510 TKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQE 2569
Query: 1926 LLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLN 1747
LLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLN
Sbjct: 2570 LLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLN 2629
Query: 1746 SRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSP 1567
SRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSP
Sbjct: 2630 SRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSP 2689
Query: 1566 MYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYN 1387
MYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYN
Sbjct: 2690 MYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYN 2749
Query: 1386 GQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRX 1207
GQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFR
Sbjct: 2750 GQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRE 2809
Query: 1206 XXXXXXXXXTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRK 1027
TVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRK
Sbjct: 2810 TFFEEFGGFTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRK 2869
Query: 1026 LSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDH 847
LSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDH
Sbjct: 2870 LSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDH 2929
Query: 846 LITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFAT 667
LITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFAT
Sbjct: 2930 LITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFAT 2989
Query: 666 RQLASADGNAEPFFXXXXXXXXXXXKRDSSRGNIDPLTEKKRSDM--------------- 532
RQLASADGNAEPFF KRDSSRGNIDPLTEKKRSDM
Sbjct: 2990 RQLASADGNAEPFFKIIEKEEYEKQKRDSSRGNIDPLTEKKRSDMVRNKGVIEHRRFFDF 3049
Query: 531 ---MVKFFQFMGCRKFRKMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEE 361
MVKFFQFMGCRKFRKMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEE
Sbjct: 3050 FEKMVKFFQFMGCRKFRKMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEE 3109
Query: 360 LPVSSDPTITAETMDRECEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDK 181
LPVSSDPTITAETMDRECEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDK
Sbjct: 3110 LPVSSDPTITAETMDRECEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDK 3169
Query: 180 AKPKTTVRYIVSVSGTLESIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF 4
AKPKTTVRYIVSVSGTLESIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF
Sbjct: 3170 AKPKTTVRYIVSVSGTLESIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF 3228
Score = 1831 bits (4744), Expect = 0.0
Identities = 930/1578 (58%), Positives = 1161/1578 (72%), Gaps = 38/1578 (2%)
Frame = -1
Query: 4695 LRKYEIEIKSRQETQIVEEQDCDCFFEINFEVESEQFDHTIIDAMHDYLSDLNV--YVPY 4522
L +Y I++ ++ + Q+VEEQDC+ F+E N+EV + +F H +I A+ YL DL+ +P+
Sbjct: 38 LNEYNIKVLTKGQVQVVEEQDCEPFYETNYEVATSRFSHDLIAAIQTYLKDLSTDHLMPF 97
Query: 4521 QRPNIVLHGSDFWLRTLDCH-TEIPLAAIYFGNIQGGTYFNHWQVSF-----SRENISSR 4360
QR N+VLH SDFW L CH +IPLAA++FGNIQGGT+ NHW+VSF R++ +R
Sbjct: 98 QRGNLVLHSSDFWSSELTCHLVDIPLAAVFFGNIQGGTFINHWEVSFWDDVRRRKSARTR 157
Query: 4359 DM---------LHKIHAEFEFDKTDMITVQFQCFE---EKKQKFEDSRKQKVRVNYQLTX 4216
+ +++I EFEFDK D +TV F+ FE E K KQ V + YQ+T
Sbjct: 158 NTEPTQADKIGMNQIKVEFEFDKIDFMTVHFKHFENDFEVADKDAKRTKQTVTMYYQITV 217
Query: 4215 XXXXXXXXIVDPRVEGCNTC----VHFEVNCPPLIRKGYIDNDKSSFHKPFYERQKRFDC 4048
IVDP V+ CN VHFE+NCP LIR+ Y + S ++ +R+
Sbjct: 218 RRTSIRRIIVDPVVQDCNGSDRIRVHFELNCPVLIRRAYRTAKQESENRHSVPHYRRYLV 277
Query: 4047 DWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRTKVLIEFANLPSID 3868
R + N P AI DSP FTIEF + + E+YR+LSRLR RT V IEFA++PSID
Sbjct: 278 INRGRSANQ-YPTAKAITDSPVFTIEFDQSVGLNEIYRLLSRLRIRTGVSIEFADIPSID 336
Query: 3867 VPMGSHYPYNRW----NLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLIDVNEERKFSI 3700
+ PYNRW N SPT +API+R+F+ FP K+E+ + +D N ERKF+I
Sbjct: 337 CLIWRENPYNRWTFLNNQHLSPTHFSAPIYRDFITTAFPKKHEVCGSREVDTNRERKFAI 396
Query: 3699 TYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLVHLIDGRKRI 3520
TYL+ECL+SRGA+VKDQ+LL+E W FLE+I+ YY D++LCEA LEDLVH+IDGRKRI
Sbjct: 397 TYLLECLISRGAVVKDQILLDEGIWHRFLEVILHYYTKDDKLCEAGLEDLVHMIDGRKRI 456
Query: 3519 GSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPETIMGNRVLR 3340
GS++KC D+ICQ R+ LVNGLT +E EGYQRVRK+IFTPTRVIY+APET+MGNRVLR
Sbjct: 457 GSLIKCFDRICQTRQRNSLVNGLTTEEMREGYQRVRKIIFTPTRVIYVAPETLMGNRVLR 516
Query: 3339 KFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYGFLGCSNSQM 3160
++D DGTRVLR+TFRDD+N+KMR+N T +L++T N+YL++G+ +A R +G+LG SNSQM
Sbjct: 517 RYDHDGTRVLRITFRDDDNQKMRTNKTSTMLEKTVNQYLKNGITVAGRNFGYLGSSNSQM 576
Query: 3159 RDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQ 2980
RDNGAYFM +++ Q + + I F PKI R LGRF I+N+PK+MARLGQ
Sbjct: 577 RDNGAYFMEKYSSSQCREYERIYQIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQ 636
Query: 2979 CFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKA 2800
CFTQSRL+GV L R Y +TYDLTGG+ G EYTFSDGVGMMSY+FAQ VS+ M FGK
Sbjct: 637 CFTQSRLSGVNLERCTYMTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKG 696
Query: 2799 VPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVT-----SMKMAKCLFRPSQIKFQAKA 2635
VPSCFQ RFRG KGVI+IEP LD +R+W++ ++ S C+FRPSQIKF +K
Sbjct: 697 VPSCFQFRFRGMKGVISIEPLLDNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKR 756
Query: 2634 ISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILSFAKQ 2455
DQ+E+VK+SS V VALNKPFINILDQVSEMQSL+CH+R+T+RIEEL+DRQ+LSFA+Q
Sbjct: 757 HPRDQVEIVKYSSPVPVALNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQ 816
Query: 2454 MNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQI 2275
M +ETFCRN+LKE PRR+DID LRT WGFTLSSEPFFRSLIKASIKFSIT+QL KEQI I
Sbjct: 817 MVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPI 876
Query: 2274 PSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNP 2095
P +LGRSMLGVVDETGRLQYGQIFVQYTKN KLPP+++ +++TGTVLLTKNP
Sbjct: 877 PCDLGRSMLGVVDETGRLQYGQIFVQYTKNLALKLPPKNA-----ARQVLTGTVLLTKNP 931
Query: 2094 CIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLE 1915
CIV GDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYS+IWDQ+LLL+
Sbjct: 932 CIVAGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLD 991
Query: 1914 RNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRVC 1735
+NE+P+DF EK K + +++D LMREFYV YLKLDSVGQISNSHLHNSDQYGLN+RVC
Sbjct: 992 KNEDPYDFTSEKQKASFKEDEIDDLMREFYVKYLKLDSVGQISNSHLHNSDQYGLNARVC 1051
Query: 1734 MDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVS 1555
MDLAKKNCQAVDFTKSGQPPD LE KWR D T E+IPPE ER+PD+HMGN+ +PMYVS
Sbjct: 1052 MDLAKKNCQAVDFTKSGQPPDELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVS 1111
Query: 1554 PRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLR 1375
PRLCGKLFREF+AID+V+KISEERDEQ I +DETI + G+ YM SA+ L+ YN QLR
Sbjct: 1112 PRLCGKLFREFKAIDDVLKISEERDEQVEISIDETIKIDGYTEYMASAKNDLARYNAQLR 1171
Query: 1374 SIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRXXXXX 1195
S+MENYGI++EGE+ SGCIV+MRNRISDKDQDDMSF+NTNQMIETK+T+L K+R
Sbjct: 1172 SMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFFNTNQMIETKLTNLFKKYREIFFE 1231
Query: 1194 XXXXXTVKCTLLPNAYD-NGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRKLSF 1018
T + Y + N L +C P ++ KKAVAWYRACYE A+ TRE +KLSF
Sbjct: 1232 EFEGGWEGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYRACYEEARITRENKKLSF 1291
Query: 1017 AWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDHLIT 838
AW+AYDVIAKVK+ L ++ +++GGANP+YT L++HR QYL+D+ F+ F + T
Sbjct: 1292 AWLAYDVIAKVKQDKSLTSDEVKMGGANPLYTMLDDHRSQYLVDNSRKFEAFRQFSTPKT 1351
Query: 837 -GEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFATRQ 661
GE+ K A I+K+Y E PGLD+V FML W LF+ + ++ YH L+FILFATRQ
Sbjct: 1352 SGEQVKRAHRIIKMYTETYPGLDAVLFMLDEWARISNLFENQSLREYHLSLLFILFATRQ 1411
Query: 660 LASADGNAEPFFXXXXXXXXXXXKRDSSRGNIDP---LTEKKRSDMMVKFFQFMGCRKFR 490
+S DGNA FF K+ + G+ +P + EK +S MMVKF +F+ RKFR
Sbjct: 1412 FSSVDGNAAKFF---NKVDEKSYKQSKTIGDFEPSLYIEEKGKSQMMVKFLEFLASRKFR 1468
Query: 489 KMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAETMDRE 310
KM+ LSFC L+FSSIFMRGEW+IFH +ALKTYYN+LFNLRFEELPVS+DPT T ++ RE
Sbjct: 1469 KMANLSFCALDFSSIFMRGEWQIFHLAALKTYYNVLFNLRFEELPVSTDPTTTVRSIIRE 1528
Query: 309 CEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSVSGTL 130
EPFVIELP N + + + + +HT V + MR EK+ + K +R +VS GTL
Sbjct: 1529 NEPFVIELPANCDRSLVHRKLVEHTGVKEIFMRNMEKSVRSSDDVQKINMRLLVSTRGTL 1588
Query: 129 ESIQMLKKLSAVTIPIKS 76
ES+ L++L AV +PIK+
Sbjct: 1589 ESMYKLRQLVAVKVPIKT 1606
>gi|17508365|ref|NP_493057.1| RNA-dependent RNA polymerase Family
member (rrf-2) [Caenorhabditis elegans]
gi|13655331|emb|CAC35914.1| Hypothetical protein M01G12.12
[Caenorhabditis elegans]
gi|14030853|emb|CAC35915.1| C. elegans RRF-2 protein (corresponding
sequence M01G12.12) [Caenorhabditis elegans]
Length = 1579
Score = 2103 bits (5450), Expect = 0.0
Identities = 1056/1605 (65%), Positives = 1257/1605 (77%), Gaps = 10/1605 (0%)
Frame = -1
Query: 4791 HGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCDCFFEI 4612
+G I+ EFPEFD+S+ IE I+ ML + ++L+ ++I+IKSR E +IVEEQDCD FFE+
Sbjct: 5 NGSIRLEFPEFDDSIDRIEYGIEMMLNSVPAILQHHKIDIKSRHEMEIVEEQDCDSFFEV 64
Query: 4611 NFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPLAAIYF 4432
N++V S +FD TIIDAM YL LN P RP IVLHGSDFW +TLDC+ E+PLAA+YF
Sbjct: 65 NYDVASAKFDQTIIDAMRAYLFSLNANWP--RPYIVLHGSDFWAKTLDCYIEVPLAAMYF 122
Query: 4431 GNIQGGTYFNHWQVSFSRENISS--RDMLHKIHAEFEFDKTDMITVQFQCFEEKKQKFED 4258
GNIQG TY +HWQ+SFS + IS+ ++L+KI AEFEFD+ DMITV FQC + K
Sbjct: 123 GNIQGYTYISHWQISFSGKKISADANELLNKIVAEFEFDRADMITVTFQCLKRK------ 176
Query: 4257 SRKQKVRVNYQLTXXXXXXXXXIVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSFHKP 4078
R+NYQ IVDP+V+ T +HFE+NCPPLIR+G +D+DK S KP
Sbjct: 177 ------RINYQTIIRKDTIRRIIVDPQVDMNKTRIHFELNCPPLIRQGSVDDDKPSTQKP 230
Query: 4077 FYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEIS-------TKEMYRVLSRL 3919
FY+R R+ C G +G+P ++AI+DSPFFTIE K+ S +YRVLSRL
Sbjct: 231 FYKRTNRYSCI---GTKEYGSPHESAISDSPFFTIELQKQESDGNSGDSNDTLYRVLSRL 287
Query: 3918 RSRTKVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDD 3739
RSRT V IEFAN P +DVP+G YPY R+ PT S + F F+ FP K +I+D
Sbjct: 288 RSRTGVQIEFANFPKVDVPIGKVYPYLRY-----PTSSKSYAFECFIYNCFPSKMKIIDA 342
Query: 3738 KLIDVNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAAL 3559
+ I+ N+ R+F+ITYLIECLLSRGAIVKDQ+L +E W FL +I YY +++LCEAAL
Sbjct: 343 QSINENDGRQFAITYLIECLLSRGAIVKDQVLTDEICWGQFLGLITHYYLENDKLCEAAL 402
Query: 3558 EDLVHLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIY 3379
EDL++LIDGRKRIGSI KC KICQKR VM+L NG++E+E EGYQRVRKVIFTPTRVIY
Sbjct: 403 EDLIYLIDGRKRIGSIWKCFHKICQKRLVMQLTNGMSEQEIEEGYQRVRKVIFTPTRVIY 462
Query: 3378 IAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIAN 3199
PE IMGNRVLR FD+DGT VLRVTFRDDNN+KMR+N TG+LLD KYLEHG+ +AN
Sbjct: 463 TPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELLDICVKKYLEHGIVVAN 522
Query: 3198 REYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSE 3019
R++GFLGCS+SQMRDNGAYFM++ TD + N N FKP ID VR QLG F +
Sbjct: 523 RDFGFLGCSSSQMRDNGAYFMVKNTDNRHK-----NACKMNSKFKPNIDSVRNQLGNFLQ 577
Query: 3018 IENVPKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQF 2839
IEN+PKLMARLGQCFTQSRLTGV LG D+YC T+DL+GGR++NGSEYTFSDGVGMMSY+F
Sbjct: 578 IENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTHDLSGGRSSNGSEYTFSDGVGMMSYEF 637
Query: 2838 AQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPS 2659
AQEVS+ M FG++VPSCFQ R+RG KGV+AI+P LD+ R W +G++ K KC+FRPS
Sbjct: 638 AQEVSRLMSFGRSVPSCFQFRYRGMKGVLAIDPLLDKERNWQEKHGISLSKNIKCVFRPS 697
Query: 2658 QIKFQAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDR 2479
QIKF+ K I GDQ+EMVK+SS VLVALNKP INILDQVSEMQSL+CH+RITSRIEELMD
Sbjct: 698 QIKFEGKQILGDQVEMVKYSSPVLVALNKPLINILDQVSEMQSLECHRRITSRIEELMDL 757
Query: 2478 QILSFAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQ 2299
Q LSFAKQM +E RNKLKEFPRRIDID LRT+WGFTLS+EPFFRSL+KASIKF+ITKQ
Sbjct: 758 QTLSFAKQMTDEACFRNKLKEFPRRIDIDYLRTIWGFTLSNEPFFRSLVKASIKFAITKQ 817
Query: 2298 LCKEQIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTG 2119
L KEQIQIPSELGRSMLGVVDETG LQYGQ+FVQYTKN++ LPPRDSN KV GSEIVTG
Sbjct: 818 LFKEQIQIPSELGRSMLGVVDETGILQYGQVFVQYTKNHRNILPPRDSNRKVLGSEIVTG 877
Query: 2118 TVLLTKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVI 1939
TVLLTKNP IVPGDVRIFEAVDIPELHH+CDVVVFPQHGPRPHPDEMAGSDLDGDEYSVI
Sbjct: 878 TVLLTKNPGIVPGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVI 937
Query: 1938 WDQELLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQ 1759
WDQ+LLLERNEE FDFAVEK Y+ E +D LMR+ YV YLK D VG I+NSHLHNSDQ
Sbjct: 938 WDQKLLLERNEEAFDFAVEKNLQTYEWEDIDDLMRDVYVEYLKKDLVGLIANSHLHNSDQ 997
Query: 1758 YGLNSRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGN 1579
YGL SRVCM+LAKK+CQAVDF+KSG+PPD L+T W+ D T E+IPPE ER+PD+H+G+
Sbjct: 998 YGLTSRVCMNLAKKSCQAVDFSKSGKPPDELQTTWKTDDATGEMIPPERAERVPDYHVGS 1057
Query: 1578 ERSPMYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQL 1399
+ P YVSPRLCGKLFREFQ IDN +KISEE+ EQY IE+DE+I V GFE YME A+KQL
Sbjct: 1058 DHMPKYVSPRLCGKLFREFQGIDNAMKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQL 1117
Query: 1398 SSYNGQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVC 1219
+SYNGQL+S M+ YGI+SEGEIMSGCI+EMRNRISD DQDDMSFYNTN+MIETKMT+LV
Sbjct: 1118 ASYNGQLKSTMDTYGIQSEGEIMSGCIIEMRNRISDSDQDDMSFYNTNRMIETKMTALVS 1177
Query: 1218 KFRXXXXXXXXXXTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTR 1039
KFR CTLLP+AY+ N N+RCE+P++E+RKKAVAWYRACYECA+STR
Sbjct: 1178 KFRTIFFQQFGGFQEVCTLLPDAYNESNFFNFRCENPNEEIRKKAVAWYRACYECAKSTR 1237
Query: 1038 EVRKLSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNF- 862
E RKLSFAWIAYDVIAK+KET VL N M IGGANPMYT+LE HR +Y+ DH DF+ F
Sbjct: 1238 EPRKLSFAWIAYDVIAKIKETKVLENVEMNIGGANPMYTYLEHHRARYINDHVDDFEKFR 1297
Query: 861 CELDHLITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMF 682
LD+LITG++SK+A+ IL+ Y+ MIPGLDSV F+LMRWGE+L LF+G+ + IYHF LMF
Sbjct: 1298 RNLDNLITGKESKKAVFILQRYIYMIPGLDSVMFVLMRWGEALELFEGRSMSIYHFLLMF 1357
Query: 681 ILFATRQLASADGNAEPFFXXXXXXXXXXXKRDSSRGNIDPLTEKKRSDMMVKFFQFMGC 502
I+F+T QLASADGNAE FF K++ + PLT +RSDMM KFFQ MG
Sbjct: 1358 IMFSTGQLASADGNAEQFFGKLDVEEYRRRKKNGTLEPDIPLTRHQRSDMMFKFFQLMGS 1417
Query: 501 RKFRKMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAET 322
RKFR M ++SF PL FSS+FM GEW +FHE ALKTYYNI+FNLRFEELP+S+DPT T ET
Sbjct: 1418 RKFRTMRSISFRPLGFSSVFMSGEWMVFHEPALKTYYNIMFNLRFEELPISTDPTTTHET 1477
Query: 321 MDRECEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSV 142
RECEPFVIELPE N++ LI + + + VS + +RRQ+KN K +TVRYIVS
Sbjct: 1478 RLRECEPFVIELPEKANMDMLIKKLTEKSKVSQLNLRRQDKN----KKTSNSTVRYIVSA 1533
Query: 141 SGTLESIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGE 7
SGT ES Q L+KL VT PIK+HWEG++++QQMA+ CY K+M +
Sbjct: 1534 SGTFESTQQLRKLVTVTSPIKNHWEGQDLAQQMANFCYLKIMKDD 1578
>gi|39581291|emb|CAE72312.1| Hypothetical protein CBG19448
[Caenorhabditis briggsae]
Length = 1606
Score = 1942 bits (5030), Expect = 0.0
Identities = 977/1620 (60%), Positives = 1218/1620 (74%), Gaps = 28/1620 (1%)
Frame = -1
Query: 4791 HGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCDCFFEI 4612
HGFIK EFPE NS + +E I +L L++Y I+I+ Q+V+E+DCD FE+
Sbjct: 1 HGFIKLEFPESTNSRKEMEIVIGKLLAGLPESLQRYGIQIEREHPMQVVQEEDCDACFEV 60
Query: 4611 NFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHT-EIPLAAIY 4435
N+EV E+F H II+AM Y+ V Y +P I+LH DFW TL ++PL+AIY
Sbjct: 61 NYEVTCEEFKHNIINAMQRYMDGWRHCVAYAKPTILLHSLDFWRTTLHLQVNDVPLSAIY 120
Query: 4434 FGNIQGGTYFNHWQVSFSREN----ISSRDMLHKIHAEFEFDKTDMITVQFQCFE-EKKQ 4270
FGNIQG + NH++VSF +EN I + ++ I +FEFDK DMI V FQC + E+ +
Sbjct: 121 FGNIQGNAFINHYEVSFWKENEGKSIRRKTPMNNITVDFEFDKCDMICVNFQCVQIEEDR 180
Query: 4269 KFEDSRKQKVRVNYQLTXXXXXXXXXIVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSS 4090
++ + N ++ + D G T VHFE+NCPPLIRKG I+ D +
Sbjct: 181 NANAGGDKRNQFNNSISIRRIIVDTNVTDRY--GDRTRVHFELNCPPLIRKGIINADHAD 238
Query: 4089 --FHKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLR 3916
+ KPFY+R K +W HG P +AAI+DSP FT++F + E++R+LSRLR
Sbjct: 239 NPYVKPFYQRWKVIKKEWDG----HGWPNEAAISDSPIFTVDFDPIVQNFELHRILSRLR 294
Query: 3915 SRTKVLIEFANLPSIDVPMGSHYPYNRWNLKK----SPTDSNAPIFREFLKEIFPPKYEI 3748
RT V IEF LP+I VPM +PY+RW +K + D++APIFR+FL ++FP K+E+
Sbjct: 295 VRTGVSIEFGMLPAISVPMCKRWPYHRWTIKDGKQLAAADTDAPIFRDFLADLFPKKFEV 354
Query: 3747 VDD-KLIDVNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLC 3571
DD KLIDVN+ERKFSITYLIECL+SRGA+VKDQ+LL+EQHW++FL II YY+ D++LC
Sbjct: 355 NDDDKLIDVNDERKFSITYLIECLISRGAVVKDQILLDEQHWRSFLGIIWRYYKVDDKLC 414
Query: 3570 EAALEDLVHLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPT 3391
E+ALEDL+HL+DGRKRIGSI+KC DKICQKR+ M+L+N L+E E G+QRVRKVIFTPT
Sbjct: 415 ESALEDLIHLVDGRKRIGSIIKCFDKICQKRQRMQLINCLSESEIRSGFQRVRKVIFTPT 474
Query: 3390 RVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGV 3211
RVIYI+PETIMGNRVLRKFDKDGTRV+R+TFRDDNN +MR+N TG LL+ TANK+L G+
Sbjct: 475 RVIYISPETIMGNRVLRKFDKDGTRVIRITFRDDNNNQMRANDTGDLLEMTANKFLGEGI 534
Query: 3210 RIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNIN-FKPKIDEVRFQL 3034
RIANRE+GFLGCSNSQMRDNGAYFM +++ QL++F + P + + FKP+I EVR L
Sbjct: 535 RIANREFGFLGCSNSQMRDNGAYFMAKYSQSQLEKFLRTRPNEAQLKAFKPRIMEVRKHL 594
Query: 3033 GRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGM 2854
G+F ++EN+PKLMAR+GQCFTQSRLTGV L R DY D GG+ G YTFSDGVG+
Sbjct: 595 GKFDKLENIPKLMARMGQCFTQSRLTGVELNRSDYIRIPDFEGGKNLAGKPYTFSDGVGI 654
Query: 2853 MSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNG----VTSMK 2686
MSY+FAQ+V+ AMQ G +VPS FQIRFRG KG+IAI+P++D I +W + V +++
Sbjct: 655 MSYRFAQKVAHAMQMGNSVPSSFQIRFRGMKGMIAIDPYMDLIHQWNVSYDIPYQVPNLE 714
Query: 2685 MAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRIT 2506
+ KC FRPSQIKF+AK++ GDQIEMVK+S+ V+VALNKPFINILDQVSEMQSL+CHKR+T
Sbjct: 715 L-KCAFRPSQIKFEAKSLPGDQIEMVKYSAPVMVALNKPFINILDQVSEMQSLECHKRVT 773
Query: 2505 SRIEELMDRQILSFAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKA 2326
R+EELMDRQILSFA+QMN+ET+CRN+LKEFPRRIDID LR MWGFTLSSEPFFRSLIKA
Sbjct: 774 GRVEELMDRQILSFARQMNDETYCRNRLKEFPRRIDIDFLRPMWGFTLSSEPFFRSLIKA 833
Query: 2325 SIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNK 2146
SIKFSITKQL KEQIQIP ELGRSMLGVVDETG+LQYGQIFVQYT+N KKLP R N
Sbjct: 834 SIKFSITKQLRKEQIQIPKELGRSMLGVVDETGQLQYGQIFVQYTQNAAKKLPMRGPNMT 893
Query: 2145 VHGSEIVTGTVLLTKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSD 1966
V ++IVTGTVL+TKNPCIV GDVR+FEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSD
Sbjct: 894 VPDAKIVTGTVLVTKNPCIVTGDVRVFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSD 953
Query: 1965 LDGDEYSVIWDQELLLERNEEPFDFAVE-KIKVPYDREKLDVLMREFYVTYLKLDSVGQI 1789
LDGDEYS+IWDQ+LLL+RNE+PFDF+VE K VP+D +++D LMR+FYV YLKLDSVG I
Sbjct: 954 LDGDEYSIIWDQQLLLDRNEDPFDFSVEKKDPVPFDFDQIDDLMRDFYVKYLKLDSVGTI 1013
Query: 1788 SNSHLHNSDQYGLNSRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENP 1609
SN+HLHNSDQYGL S VCM+LAKKN QAVDFTKSG PP PL +W DP T E IPPE
Sbjct: 1014 SNNHLHNSDQYGLTSTVCMNLAKKNSQAVDFTKSGDPPAPLTREWGKDPETGENIPPEGA 1073
Query: 1608 ERIPDFHMGNERSPMYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFE 1429
ERIPD+HM NER P+YVSPRLCG+LFREFQAIDNVIKISEERDEQ+ +++DET+ + G+E
Sbjct: 1074 ERIPDYHMANERVPVYVSPRLCGRLFREFQAIDNVIKISEERDEQFEVQIDETLMIQGYE 1133
Query: 1428 RYMESAQKQLSSYNGQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDD-MSFYNTNQ 1252
YME A+K L++YNGQLR+IME YGIR+EGEIMS CI++MRNRISD+DQDD MSFYNTNQ
Sbjct: 1134 AYMEGARKDLANYNGQLRAIMETYGIRTEGEIMSDCILDMRNRISDRDQDDKMSFYNTNQ 1193
Query: 1251 MIETKMTSLVCKFRXXXXXXXXXXTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWY 1072
MIET+ T+L C+FR CT + N+ D+ N LN+RC+ P + +KAVAWY
Sbjct: 1194 MIETRTTALFCRFRENFFKEFHGFQAACTEIQNSNDSTNPLNFRCDGPSVPMLQKAVAWY 1253
Query: 1071 RACYECAQSTREVRKLSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYL 892
RACYE AQS+RE RKLSFAWI +DV+AKVKE N+L+ E +++GG NPMY FLE HR QY+
Sbjct: 1254 RACYEFAQSSRETRKLSFAWIVFDVLAKVKEHNMLHGENVEMGGGNPMYIFLEAHRAQYI 1313
Query: 891 IDHDADFKNFCELDHLITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKP 712
D+ +F+ F + LI ++S + ++IL+ Y+ GLD+V F+LM+WGE++ LF +P
Sbjct: 1314 ADNFEEFQEFRTMSCLIEDDRSVKGVNILRRYMARYDGLDTVLFVLMKWGEAMHLFHNQP 1373
Query: 711 IKIYHFFLMFILFATRQLASADGNAEPFFXXXXXXXXXXXKRDSSRGNIDPLTEKKRSDM 532
I+ Y FFLMFILFATRQ+ AD +E F D + PLTE K+S M
Sbjct: 1374 IRKYQFFLMFILFATRQIGLADLLSETFIARIVED-------DVENASTVPLTEDKKSHM 1426
Query: 531 --------MVKFFQFMGCRKFRKMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFN 376
M KF +FM CRKFRK+ ++SF L ++MRGEW IFH +++KTYYNILFN
Sbjct: 1427 VCRKEKKRMSKFLEFMACRKFRKLRSISFRALGIPGVYMRGEWHIFHVASIKTYYNILFN 1486
Query: 375 LRFEELPVSSDPTITAETMDRECEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKN 196
LRFEELP+S+DPTIT E+M RE EP+ IELPE N+ + + + V MR Q
Sbjct: 1487 LRFEELPISTDPTITLESMIRESEPYTIELPERTEANECLKMLTTKSGCQEVHMRMQSNR 1546
Query: 195 PINDKAKPKTTVRYIVSVSGTLESIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVM 16
+ K + VRY+VS G +ES+Q LK+L+AVTIPI+SH G+EV+ QMA+LC K+M
Sbjct: 1547 AEDKKRADEENVRYMVSARGNVESLQRLKQLTAVTIPIRSHIGGKEVASQMANLCLDKIM 1606
>gi|17506499|ref|NP_492132.1| RNA-directed RNA polymerase related,
regulates germline development and RNA interference,
Enhancer of Glp-One (glp-1) EGO-1 (190.1 kD) (ego-1)
[Caenorhabditis elegans]
gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1
[Caenorhabditis elegans]
gi|14530420|emb|CAB01701.2| Hypothetical protein F26A3.3
[Caenorhabditis elegans]
Length = 1632
Score = 1857 bits (4809), Expect = 0.0
Identities = 941/1600 (58%), Positives = 1178/1600 (72%), Gaps = 38/1600 (2%)
Frame = -1
Query: 4695 LRKYEIEIKSRQETQIVEEQDCDCFFEINFEVESEQFDHTIIDAMHDYLSDLNV--YVPY 4522
L +Y I++ ++ + Q+VEEQDC+ F+E N+EV + +F H +I A+ YL DL+ +P+
Sbjct: 38 LNEYNIKVLTKGQVQVVEEQDCEPFYETNYEVATSRFSHDLIAAIQTYLKDLSTDHLMPF 97
Query: 4521 QRPNIVLHGSDFWLRTLDCH-TEIPLAAIYFGNIQGGTYFNHWQVSF-----SRENISSR 4360
QR N+VLH SDFW L CH +IPLAA++FGNIQGGT+ NHW+VSF R++ +R
Sbjct: 98 QRGNLVLHSSDFWSSELTCHLVDIPLAAVFFGNIQGGTFINHWEVSFWDDVRRRKSARTR 157
Query: 4359 DM---------LHKIHAEFEFDKTDMITVQFQCFE---EKKQKFEDSRKQKVRVNYQLTX 4216
+ +++I EFEFDK D +TV F+ FE E K KQ V + YQ+T
Sbjct: 158 NTEPTQADKIGMNQIKVEFEFDKIDFMTVHFKHFENDFEVADKDAKRTKQTVTMYYQITV 217
Query: 4215 XXXXXXXXIVDPRVEGCNTC----VHFEVNCPPLIRKGYIDNDKSSFHKPFYERQKRFDC 4048
IVDP V+ CN VHFE+NCP LIR+ Y + S ++ +R+
Sbjct: 218 RRTSIRRIIVDPVVQDCNGSDRIRVHFELNCPVLIRRAYRTAKQESENRHSVPHYRRYLV 277
Query: 4047 DWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRTKVLIEFANLPSID 3868
R + N P AI DSP FTIEF + + E+YR+LSRLR RT V IEFA++PSID
Sbjct: 278 INRGRSANQ-YPTAKAITDSPVFTIEFDQSVGLNEIYRLLSRLRIRTGVSIEFADIPSID 336
Query: 3867 VPMGSHYPYNRW----NLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLIDVNEERKFSI 3700
+ PYNRW N SPT +API+R+F+ FP K+E+ + +D N ERKF+I
Sbjct: 337 CLIWRENPYNRWTFLNNQHLSPTHFSAPIYRDFITTAFPKKHEVCGSREVDTNRERKFAI 396
Query: 3699 TYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLVHLIDGRKRI 3520
TYL+ECL+SRGA+VKDQ+LL+E W FLE+I+ YY D++LCEA LEDLVH+IDGRKRI
Sbjct: 397 TYLLECLISRGAVVKDQILLDEGIWHRFLEVILHYYTKDDKLCEAGLEDLVHMIDGRKRI 456
Query: 3519 GSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPETIMGNRVLR 3340
GS++KC D+ICQ R+ LVNGLT +E EGYQRVRK+IFTPTRVIY+APET+MGNRVLR
Sbjct: 457 GSLIKCFDRICQTRQRNSLVNGLTTEEMREGYQRVRKIIFTPTRVIYVAPETLMGNRVLR 516
Query: 3339 KFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYGFLGCSNSQM 3160
++D DGTRVLR+TFRDD+N+KMR+N T +L++T N+YL++G+ +A R +G+LG SNSQM
Sbjct: 517 RYDHDGTRVLRITFRDDDNQKMRTNKTSTMLEKTVNQYLKNGITVAGRNFGYLGSSNSQM 576
Query: 3159 RDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQ 2980
RDNGAYFM +++ Q + + I F PKI R LGRF I+N+PK+MARLGQ
Sbjct: 577 RDNGAYFMEKYSSSQCREYERIYQIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQ 636
Query: 2979 CFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKA 2800
CFTQSRL+GV L R Y +TYDLTGG+ G EYTFSDGVGMMSY+FAQ VS+ M FGK
Sbjct: 637 CFTQSRLSGVNLERCTYMTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKG 696
Query: 2799 VPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVT-----SMKMAKCLFRPSQIKFQAKA 2635
VPSCFQ RFRG KGVI+IEP LD +R+W++ ++ S C+FRPSQIKF +K
Sbjct: 697 VPSCFQFRFRGMKGVISIEPLLDNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKR 756
Query: 2634 ISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILSFAKQ 2455
DQ+E+VK+SS V VALNKPFINILDQVSEMQSL+CH+R+T+RIEEL+DRQ+LSFA+Q
Sbjct: 757 HPRDQVEIVKYSSPVPVALNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQ 816
Query: 2454 MNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQI 2275
M +ETFCRN+LKE PRR+DID LRT WGFTLSSEPFFRSLIKASIKFSIT+QL KEQI I
Sbjct: 817 MVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPI 876
Query: 2274 PSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNP 2095
P +LGRSMLGVVDETGRLQYGQIFVQYTKN KLPP+++ +++TGTVLLTKNP
Sbjct: 877 PCDLGRSMLGVVDETGRLQYGQIFVQYTKNLALKLPPKNA-----ARQVLTGTVLLTKNP 931
Query: 2094 CIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLE 1915
CIV GDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYS+IWDQ+LLL+
Sbjct: 932 CIVAGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLD 991
Query: 1914 RNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRVC 1735
+NE+P+DF EK K + +++D LMREFYV YLKLDSVGQISNSHLHNSDQYGLN+RVC
Sbjct: 992 KNEDPYDFTSEKQKASFKEDEIDDLMREFYVKYLKLDSVGQISNSHLHNSDQYGLNARVC 1051
Query: 1734 MDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVS 1555
MDLAKKNCQAVDFTKSGQPPD LE KWR D T E+IPPE ER+PD+HMGN+ +PMYVS
Sbjct: 1052 MDLAKKNCQAVDFTKSGQPPDELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVS 1111
Query: 1554 PRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLR 1375
PRLCGKLFREF+AID+V+KISEERDEQ I +DETI + G+ YM SA+ L+ YN QLR
Sbjct: 1112 PRLCGKLFREFKAIDDVLKISEERDEQVEISIDETIKIDGYTEYMASAKNDLARYNAQLR 1171
Query: 1374 SIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRXXXXX 1195
S+MENYGI++EGE+ SGCIV+MRNRISDKDQDDMSF+NTNQMIETK+T+L K+R
Sbjct: 1172 SMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFFNTNQMIETKLTNLFKKYREIFFE 1231
Query: 1194 XXXXXTVKCTLLPNAYD-NGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRKLSF 1018
T + Y + N L +C P ++ KKAVAWYRACYE A+ TRE +KLSF
Sbjct: 1232 EFEGGWEGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYRACYEEARITRENKKLSF 1291
Query: 1017 AWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDHLIT 838
AW+AYDVIAKVK+ L ++ +++GGANP+YT L++HR QYL+D+ F+ F + T
Sbjct: 1292 AWLAYDVIAKVKQDKSLTSDEVKMGGANPLYTMLDDHRSQYLVDNSRKFEAFRQFSTPKT 1351
Query: 837 -GEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFATRQ 661
GE+ K A I+K+Y E PGLD+V FML W LF+ + ++ YH L+FILFATRQ
Sbjct: 1352 SGEQVKRAHRIIKMYTETYPGLDAVLFMLDEWARISNLFENQSLREYHLSLLFILFATRQ 1411
Query: 660 LASADGNAEPFFXXXXXXXXXXXKRDSSRGNIDP---LTEKKRSDMMVKFFQFMGCRKFR 490
+S DGNA FF K+ + G+ +P + EK +S MMVKF +F+ RKFR
Sbjct: 1412 FSSVDGNAAKFF---NKVDEKSYKQSKTIGDFEPSLYIEEKGKSQMMVKFLEFLASRKFR 1468
Query: 489 KMSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAETMDRE 310
KM+ LSFC L+FSSIFMRGEW+IFH +ALKTYYN+LFNLRFEELPVS+DPT T ++ RE
Sbjct: 1469 KMANLSFCALDFSSIFMRGEWQIFHLAALKTYYNVLFNLRFEELPVSTDPTTTVRSIIRE 1528
Query: 309 CEPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSVSGTL 130
EPFVIELP N + + + + +HT V + MR EK+ + K +R +VS GTL
Sbjct: 1529 NEPFVIELPANCDRSLVHRKLVEHTGVKEIFMRNMEKSVRSSDDVQKINMRLLVSTRGTL 1588
Query: 129 ESIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNG 10
ES+ L++L AV +PIK++ G++VS QMA LCY+K++ G
Sbjct: 1589 ESMYKLRQLVAVKVPIKTYVTGQDVSTQMARLCYEKIVRG 1628
>gi|39581073|emb|CAE57375.1| Hypothetical protein CBG00321
[Caenorhabditis briggsae]
Length = 1631
Score = 1826 bits (4730), Expect = 0.0
Identities = 933/1633 (57%), Positives = 1167/1633 (71%), Gaps = 36/1633 (2%)
Frame = -1
Query: 4800 ERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCDCF 4621
E G+IK E P F+ + I L Y + I ++ + Q VEEQDC+ F
Sbjct: 4 EGYRGWIKLEIPCFEPERHM-NNIIRCHTTKLEPALNSYNMRIHTKGQVQAVEEQDCEPF 62
Query: 4620 FEINFEVESEQFDHTIIDAMHDYLSDLNV--YVPYQRPNIVLHGSDFWLRTLDCH-TEIP 4450
+E N+E+ S F H +I A+ +YL L++ +P+Q N+VLH SDFW L CH +IP
Sbjct: 63 YESNYEIVSSHFSHHLIIAIQNYLKSLSMDRLMPFQLGNLVLHSSDFWSSELTCHLADIP 122
Query: 4449 LAAIYFGNIQGGTYFNHWQVSFSREN--------------ISSRDMLHKIHAEFEFDKTD 4312
L+A +FGNIQGGT+ NHW+VSF + S R L++I EFEFDK D
Sbjct: 123 LSAFFFGNIQGGTFINHWEVSFWEDTHRRNRLRQKNMQPTASDRQGLNQIRVEFEFDKVD 182
Query: 4311 MITVQFQC----FEEKKQKFEDSRKQKVRVNYQLTXXXXXXXXXIVDPRVEGCN----TC 4156
+TV F+ FE + F +R + V + YQ+T IVDP V N
Sbjct: 183 FMTVHFKHKEGDFEVISKDFRKTR-ETVTMYYQITVRRTSIRRVIVDPVVNDTNGGDRIR 241
Query: 4155 VHFEVNCPPLIRKGYIDNDKSSFHKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFT 3976
+HFE+NCP LIR+ Y + + K +RF R + N P AI DSP FT
Sbjct: 242 IHFELNCPVLIRRAYKTEKQEAEAKHQVPHYRRFLVINRGRSANM-YPTPKAITDSPVFT 300
Query: 3975 IEFHKEISTKEMYRVLSRLRSRTKVLIEFANLPSIDVPMGSHYPYNRWNLKKS----PTD 3808
IEF +S +E+YR++SRLR RT V IEFA +PS+D + PY+RW S PT
Sbjct: 301 IEFDTSVSLEEVYRLISRLRIRTGVSIEFATIPSVDCLIWRENPYHRWTFHGSSHLSPTH 360
Query: 3807 SNAPIFREFLKEIFPPKYEIVDDKLIDVNEERKFSITYLIECLLSRGAIVKDQLLLNEQH 3628
+API+R+F+ FP K+E+ + +D N ERKF+ITYL+ECL+SRGA+VKDQ+LL++
Sbjct: 361 FSAPIYRDFITTAFPRKHEVCGSREVDTNRERKFAITYLLECLISRGAVVKDQILLDDTI 420
Query: 3627 WKNFLEIIIWYYRNDNQLCEAALEDLVHLIDGRKRIGSILKCLDKICQKREVMKLVNGLT 3448
W FLE+I+ YY D++LCEA LEDLVH+IDGRKRIGS++KC D+ICQ R+ LVNGLT
Sbjct: 421 WHRFLEVILHYYTKDDKLCEAGLEDLVHMIDGRKRIGSLIKCFDRICQTRQKNSLVNGLT 480
Query: 3447 EKESIEGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRS 3268
+E EGYQRVRK+IFTPTRVIY+APET+MGNRVLR++D DGTRVLR+TFRDD+N+KMR+
Sbjct: 481 TEEMREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRT 540
Query: 3267 NVTGKLLDRTANKYLEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNP 3088
N T LL++T N YL +G+ +A R +G+LG SNSQMRDNGAYFM +++ Q + K
Sbjct: 541 NKTSTLLEKTVNTYLMNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYEKMCR 600
Query: 3087 TASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLT 2908
A I F PKI R LGRF I+N+PK+MARLGQCFTQSRL+GV L R Y + YDLT
Sbjct: 601 MAPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCTYVTMYDLT 660
Query: 2907 GGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDE 2728
GG+ G EYTFSDGVGMMS FAQ VSQ M FGK VPSCFQ RFRG KGVIA+EPFLD+
Sbjct: 661 GGKNIKGDEYTFSDGVGMMSMNFAQMVSQVMDFGKGVPSCFQFRFRGMKGVIAVEPFLDD 720
Query: 2727 IRKWALVNGVTSMKM-----AKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFI 2563
+R+W++ N + + C+FRPSQIKF +K DQ+E+VK+SS V V+LNKPFI
Sbjct: 721 LRQWSIENDIQEVSEDTAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVPVSLNKPFI 780
Query: 2562 NILDQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRRIDIDNLR 2383
NILDQVSEMQSL+CH+R+T+RIEEL+DRQ+LSFA+QM +ETFCRN+LKE PRRIDID LR
Sbjct: 781 NILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMIDETFCRNRLKELPRRIDIDYLR 840
Query: 2382 TMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIF 2203
T WGFTLSSEPFFRSLIKASIKFSITKQL KEQI IP++LGRSMLGVVDETGRLQYGQIF
Sbjct: 841 TTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPADLGRSMLGVVDETGRLQYGQIF 900
Query: 2202 VQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEAVDIPELHHMCDV 2023
VQYT+N KLPP+ ++ V +TGTVLLTKNPCIV GDVRIFEAVDIPELHHMCDV
Sbjct: 901 VQYTRNLALKLPPKSASRSV-----LTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCDV 955
Query: 2022 VVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDFAVEKIKVPYDREKLDV 1843
VVFPQHGPRPHPDEMAGSDLDGDEYS+IWDQ+LLL+RNE+PFDF EK K + E++D
Sbjct: 956 VVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDFTSEKQKSSFKEEEIDD 1015
Query: 1842 LMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRVCMDLAKKNCQAVDFTKSGQPPDPLE 1663
LMREFYV YLKLDSVG ISNSHLHNSDQYGLN+RVCMDLAKKNCQAVDFTKSGQPP+ LE
Sbjct: 1016 LMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARVCMDLAKKNCQAVDFTKSGQPPEELE 1075
Query: 1662 TKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVSPRLCGKLFREFQAIDNVIKISEER 1483
KWR D VT E+IPPE ER+PD+HMGN+ +PMYVSPRLCGKLFREF+AID+V+KISEER
Sbjct: 1076 RKWRKDEVTGEMIPPERAERVPDYHMGNDHTPMYVSPRLCGKLFREFKAIDDVLKISEER 1135
Query: 1482 DEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEGEIMSGCIVEMRN 1303
DEQ I +DETI V G++ YM SA++ L+ YN QLRS+MENYGI++EGE+ SGCIV+MRN
Sbjct: 1136 DEQVEITIDETIMVDGYKEYMHSAREDLARYNAQLRSMMENYGIKTEGEVFSGCIVDMRN 1195
Query: 1302 RISDKDQDDMSFYNTNQMIETKMTSLVCKFRXXXXXXXXXXTVKCTL-LPNAYDNGNCLN 1126
RISDKDQDDMSFYNTNQMIETK+T+L K+R T + N L
Sbjct: 1196 RISDKDQDDMSFYNTNQMIETKVTNLYKKYREHFFEEFEGAWEANTEGTSRGESDTNILQ 1255
Query: 1125 YRCEDPDQEVRKKAVAWYRACYECAQSTREVRKLSFAWIAYDVIAKVKETNVLNNERMQI 946
C P Q + KKAVAWYRACYE A+ TRE +KLSFAW+ YDV+A VK+T L ++ +++
Sbjct: 1256 RHCRAPTQNMMKKAVAWYRACYEEARVTRENKKLSFAWLMYDVLAMVKQTKSLTSDDIRM 1315
Query: 945 GGANPMYTFLEEHRKQYLIDHDADFKNFCEL-DHLITGEKSKEAISILKIYLEMIPGLDS 769
GG+NP+YT L+ HR QYL+D+ + F+++ GE+ A+ I+++Y+E PGL+
Sbjct: 1316 GGSNPLYTMLDAHRSQYLLDNRSVFEDYIRFAPSKNQGEQVARALEIIRMYVETNPGLEE 1375
Query: 768 VFFMLMRWGESLRLFDGKPIKIYHFFLMFILFATRQLASADGNAEPFFXXXXXXXXXXXK 589
V F++ W + +LF+ +PI+ YH L+FILFATRQ +S DGNA FF K
Sbjct: 1376 VMFVINEWARASKLFENQPIRNYHLSLLFILFATRQFSSVDGNAAAFFPKIDERGWREEK 1435
Query: 588 RDSSRGNIDPLTEKKRSDMMVKFFQFMGCRKFRKMSTLSFCPLNFSSIFMRGEWRIFHES 409
+ E K+S M+VKF +F+ RKFRK+ +SF L FSSIFMRGEW+IFH +
Sbjct: 1436 ANGEFKQGLEFMEMKKSQMIVKFLEFLASRKFRKLPNVSFRTLRFSSIFMRGEWQIFHVA 1495
Query: 408 ALKTYYNILFNLRFEELPVSSDPTITAETMDRECEPFVIELPENINVNDLINNMKKHTNV 229
ALKTYYN+LFNLRFEELPVS+DPT+T ++ RE EPFV+ELP + + + + +HT V
Sbjct: 1496 ALKTYYNLLFNLRFEELPVSTDPTMTVRSIIRENEPFVVELPADADRTLVHRKLIEHTGV 1555
Query: 228 STVKMRRQEKNPINDKAKPKTTVRYIVSVSGTLESIQMLKKLSAVTIPIKSHWEGEEVSQ 49
+ MR EK+ + K RY+VS GTLES+ L++L AV +PIK++ G+E+S
Sbjct: 1556 EEIYMRNMEKSVRGVDEQQKANTRYLVSTRGTLESMYKLRQLVAVKVPIKTYVTGQEIST 1615
Query: 48 QMASLCYQKVMNG 10
QMA LCY+K++ G
Sbjct: 1616 QMARLCYEKIVKG 1628
>gi|7505900|pir||T23669 hypothetical protein M01G12.12 -
Caenorhabditis elegans (fragment)
gi|25395342|pir||F87936 protein M01G12.12 [imported] - Caenorhabditis
elegans
Length = 604
Score = 700 bits (1807), Expect = 0.0
Identities = 363/621 (58%), Positives = 450/621 (72%), Gaps = 9/621 (1%)
Frame = -1
Query: 4791 HGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCDCFFEI 4612
+G I+ EFPEFD+S+ IE I+ ML + ++L+ ++I+IKSR E +IVEEQDCD FFE+
Sbjct: 5 NGSIRLEFPEFDDSIDRIEYGIEMMLNSVPAILQHHKIDIKSRHEMEIVEEQDCDSFFEV 64
Query: 4611 NFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPLAAIYF 4432
N++V S +FD TIIDAM YL LN P RP IVLHGSDFW +TLDC+ E+PLAA+YF
Sbjct: 65 NYDVASAKFDQTIIDAMRAYLFSLNANWP--RPYIVLHGSDFWAKTLDCYIEVPLAAMYF 122
Query: 4431 GNIQGGTYFNHWQVSFSRENISS--RDMLHKIHAEFEFDKTDMITVQFQCFEEKKQKFED 4258
GNIQG TY +HWQ+SFS + IS+ ++L+KI AEFEFD+ DMITV FQC + K
Sbjct: 123 GNIQGYTYISHWQISFSGKKISADANELLNKIVAEFEFDRADMITVTFQCLKRK------ 176
Query: 4257 SRKQKVRVNYQLTXXXXXXXXXIVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSFHKP 4078
R+NYQ IVDP+V+ T +HFE+NCPPLIR+G +D+DK S KP
Sbjct: 177 ------RINYQTIIRKDTIRRIIVDPQVDMNKTRIHFELNCPPLIRQGSVDDDKPSTQKP 230
Query: 4077 FYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEIS-------TKEMYRVLSRL 3919
FY+R R+ C G +G+P ++AI+DSPFFTIE K+ S +YRVLSRL
Sbjct: 231 FYKRTNRYSCI---GTKEYGSPHESAISDSPFFTIELQKQESDGNSGDSNDTLYRVLSRL 287
Query: 3918 RSRTKVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDD 3739
RSRT V IEFAN P +DVP+G YPY R+ PT S + F F+ FP K +I+D
Sbjct: 288 RSRTGVQIEFANFPKVDVPIGKVYPYLRY-----PTSSKSYAFECFIYNCFPSKMKIIDA 342
Query: 3738 KLIDVNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAAL 3559
+ I+ N+ R+F+ITYLIECLLSRGAIVKDQ+L +E W FL +I YY +++LCEAAL
Sbjct: 343 QSINENDGRQFAITYLIECLLSRGAIVKDQVLTDEICWGQFLGLITHYYLENDKLCEAAL 402
Query: 3558 EDLVHLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIY 3379
EDL++LIDGRKRIGSI KC KICQKR VM+L NG++E+E EGYQRVRKVIFTPTRVIY
Sbjct: 403 EDLIYLIDGRKRIGSIWKCFHKICQKRLVMQLTNGMSEQEIEEGYQRVRKVIFTPTRVIY 462
Query: 3378 IAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIAN 3199
PE IMGNRVLR FD+DGT VLRVTFRDDNN+KMR+N TG+LLD KYLEHG+ +AN
Sbjct: 463 TPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELLDICVKKYLEHGIVVAN 522
Query: 3198 REYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSE 3019
R++GFLGCS+SQMRDNGAYFM++ TD + N N FKP ID VR QLG F +
Sbjct: 523 RDFGFLGCSSSQMRDNGAYFMVKNTDNR-----HKNACKMNSKFKPNIDSVRNQLGNFLQ 577
Query: 3018 IENVPKLMARLGQCFTQSRLT 2956
IEN+PKLMARLGQCFTQSR++
Sbjct: 578 IENIPKLMARLGQCFTQSRVS 598