Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F27C1_3
(789 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17506909|ref|NP_491592.1| putative protein family member (26.... 210 3e-53
gi|7499988|pir||T29525 hypothetical protein F27C1.3 - Caenorhabd... 192 9e-48
gi|39589688|emb|CAE66923.1| Hypothetical protein CBG12311 [Caeno... 125 8e-28
gi|17505923|ref|NP_492537.1| putative protein family member (1K1... 122 9e-27
gi|17507303|ref|NP_492538.1| putative protein family member (1K1... 114 3e-24
gi|39579752|emb|CAE56703.1| Hypothetical protein CBG24488 [Caeno... 112 9e-24
gi|39595140|emb|CAE60177.1| Hypothetical protein CBG03732 [Caeno... 112 9e-24
gi|17508115|ref|NP_492545.1| putative protein family member (28.... 109 8e-23
gi|39595138|emb|CAE60175.1| Hypothetical protein CBG03730 [Caeno... 108 1e-22
gi|39584447|emb|CAE72585.1| Hypothetical protein CBG19773 [Caeno... 98 2e-19
gi|17509711|ref|NP_491211.1| predicted CDS, putative protein fam... 97 4e-19
gi|17562958|ref|NP_506634.1| putative protein family member (5P1... 94 3e-18
gi|17505476|ref|NP_492578.1| predicted CDS, putative protein fam... 94 3e-18
gi|39595137|emb|CAE60174.1| Hypothetical protein CBG03729 [Caeno... 90 6e-17
gi|39584389|emb|CAE72527.1| Hypothetical protein CBG19707 [Caeno... 85 2e-15
gi|17539276|ref|NP_501795.1| putative protein family member, wit... 81 2e-14
gi|17505444|ref|NP_492645.1| putative nuclear protein family mem... 77 3e-13
gi|39595178|emb|CAE60215.1| Hypothetical protein CBG03783 [Caeno... 75 2e-12
gi|39598271|emb|CAE68963.1| Hypothetical protein CBG14943 [Caeno... 60 7e-08
gi|17542214|ref|NP_502074.1| putative nuclear protein family mem... 43 0.009
gi|17507413|ref|NP_491273.1| predicted CDS, putative nuclear pro... 42 0.019
gi|17507411|ref|NP_491272.1| putative nuclear protein family mem... 42 0.019
gi|39591524|emb|CAE71100.1| Hypothetical protein CBG17952 [Caeno... 40 0.056
gi|39583634|emb|CAE65738.1| Hypothetical protein CBG10823 [Caeno... 40 0.074
gi|17566654|ref|NP_506512.1| putative nuclear protein, with 2 co... 33 9.0
>gi|17506909|ref|NP_491592.1| putative protein family member (26.7
kD) (1F995) [Caenorhabditis elegans]
gi|15145723|gb|AAB37653.2| Hypothetical protein F27C1.3
[Caenorhabditis elegans]
Length = 262
Score = 210 bits (534), Expect = 3e-53
Identities = 122/262 (46%), Positives = 122/262 (46%)
Frame = +1
Query: 1 MMSMELFGLQPIFMILLQLALCWTVPAAILVNCXXXXXXXXXYSXXXXXXXXXXXXXXXX 180
MMSMELFGLQPIFMILLQLALCWTVPAAILVNC YS
Sbjct: 1 MMSMELFGLQPIFMILLQLALCWTVPAAILVNCGKKSKGKKKYSDETGTTGGTTGGDDDD 60
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAIADTHDPNYQTLAGL 360
RAAIADTHDPNYQTLAGL
Sbjct: 61 DDEDDEKRRKKKKNDAIAAKKKKAAAKEKGKIPAGAPKPPKNRAAIADTHDPNYQTLAGL 120
Query: 361 NDNVFEQXXXXXXXXXXXXXXXXXXXXXXTHDPNYQTLAGLNDNVFDXXXXXXXXXXXXX 540
NDNVFEQ THDPNYQTLAGLNDNVFD
Sbjct: 121 NDNVFEQKQGGGGGGAAPKAPDGKPGMAGTHDPNYQTLAGLNDNVFDKKGGGGAGPQAPA 180
Query: 541 XXXXXXXXXTHDPNYQTLAGLNNNVFDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHD 720
THDPNYQTLAGLNNNVFDQ THD
Sbjct: 181 AGGKPGMAATHDPNYQTLAGLNNNVFDQKGGVGGGGGGGNGAPAPPKAPAQHGAKAATHD 240
Query: 721 PNYQTLAGLNQDVFGADKKKAY 786
PNYQTLAGLNQDVFGADKKKAY
Sbjct: 241 PNYQTLAGLNQDVFGADKKKAY 262