Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= F27C1_3
         (789 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17506909|ref|NP_491592.1| putative protein family member (26....   210   3e-53
gi|7499988|pir||T29525 hypothetical protein F27C1.3 - Caenorhabd...   192   9e-48
gi|39589688|emb|CAE66923.1| Hypothetical protein CBG12311 [Caeno...   125   8e-28
gi|17505923|ref|NP_492537.1| putative protein family member (1K1...   122   9e-27
gi|17507303|ref|NP_492538.1| putative protein family member (1K1...   114   3e-24
gi|39579752|emb|CAE56703.1| Hypothetical protein CBG24488 [Caeno...   112   9e-24
gi|39595140|emb|CAE60177.1| Hypothetical protein CBG03732 [Caeno...   112   9e-24
gi|17508115|ref|NP_492545.1| putative protein family member (28....   109   8e-23
gi|39595138|emb|CAE60175.1| Hypothetical protein CBG03730 [Caeno...   108   1e-22
gi|39584447|emb|CAE72585.1| Hypothetical protein CBG19773 [Caeno...    98   2e-19
gi|17509711|ref|NP_491211.1| predicted CDS, putative protein fam...    97   4e-19
gi|17562958|ref|NP_506634.1| putative protein family member (5P1...    94   3e-18
gi|17505476|ref|NP_492578.1| predicted CDS, putative protein fam...    94   3e-18
gi|39595137|emb|CAE60174.1| Hypothetical protein CBG03729 [Caeno...    90   6e-17
gi|39584389|emb|CAE72527.1| Hypothetical protein CBG19707 [Caeno...    85   2e-15
gi|17539276|ref|NP_501795.1| putative protein family member, wit...    81   2e-14
gi|17505444|ref|NP_492645.1| putative nuclear protein family mem...    77   3e-13
gi|39595178|emb|CAE60215.1| Hypothetical protein CBG03783 [Caeno...    75   2e-12
gi|39598271|emb|CAE68963.1| Hypothetical protein CBG14943 [Caeno...    60   7e-08
gi|17542214|ref|NP_502074.1| putative nuclear protein family mem...    43   0.009
gi|17507413|ref|NP_491273.1| predicted CDS, putative nuclear pro...    42   0.019
gi|17507411|ref|NP_491272.1| putative nuclear protein family mem...    42   0.019
gi|39591524|emb|CAE71100.1| Hypothetical protein CBG17952 [Caeno...    40   0.056
gi|39583634|emb|CAE65738.1| Hypothetical protein CBG10823 [Caeno...    40   0.074
gi|17566654|ref|NP_506512.1| putative nuclear protein, with 2 co...    33   9.0


>gi|17506909|ref|NP_491592.1| putative protein family member (26.7
           kD) (1F995) [Caenorhabditis elegans]
 gi|15145723|gb|AAB37653.2| Hypothetical protein F27C1.3
           [Caenorhabditis elegans]
          Length = 262

 Score =  210 bits (534), Expect = 3e-53
 Identities = 122/262 (46%), Positives = 122/262 (46%)
 Frame = +1

Query: 1   MMSMELFGLQPIFMILLQLALCWTVPAAILVNCXXXXXXXXXYSXXXXXXXXXXXXXXXX 180
           MMSMELFGLQPIFMILLQLALCWTVPAAILVNC         YS
Sbjct: 1   MMSMELFGLQPIFMILLQLALCWTVPAAILVNCGKKSKGKKKYSDETGTTGGTTGGDDDD 60

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAIADTHDPNYQTLAGL 360
                                                     RAAIADTHDPNYQTLAGL
Sbjct: 61  DDEDDEKRRKKKKNDAIAAKKKKAAAKEKGKIPAGAPKPPKNRAAIADTHDPNYQTLAGL 120

Query: 361 NDNVFEQXXXXXXXXXXXXXXXXXXXXXXTHDPNYQTLAGLNDNVFDXXXXXXXXXXXXX 540
           NDNVFEQ                      THDPNYQTLAGLNDNVFD
Sbjct: 121 NDNVFEQKQGGGGGGAAPKAPDGKPGMAGTHDPNYQTLAGLNDNVFDKKGGGGAGPQAPA 180

Query: 541 XXXXXXXXXTHDPNYQTLAGLNNNVFDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHD 720
                    THDPNYQTLAGLNNNVFDQ                             THD
Sbjct: 181 AGGKPGMAATHDPNYQTLAGLNNNVFDQKGGVGGGGGGGNGAPAPPKAPAQHGAKAATHD 240

Query: 721 PNYQTLAGLNQDVFGADKKKAY 786
           PNYQTLAGLNQDVFGADKKKAY
Sbjct: 241 PNYQTLAGLNQDVFGADKKKAY 262




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