Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F29D11_1
(141 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|25145549|ref|NP_740891.1| aboc, EXpulsion defective AEX-1, C2... 96 3e-19
gi|7498198|pir||T20361 hypothetical protein D2030.10 - Caenorhab... 96 3e-19
>gi|25145549|ref|NP_740891.1| aboc, EXpulsion defective AEX-1, C2
calcium binding domain protein involved in the regulation
retrograde signaling at neuromuscular junctions (117.2
kD) (aex-1) [Caenorhabditis elegans]
gi|18996379|gb|AAL82897.1| AEX-1 [Caenorhabditis elegans]
gi|21615443|emb|CAA98122.2| Hypothetical protein D2030.10a
[Caenorhabditis elegans]
gi|21615468|emb|CAA98125.2| Hypothetical protein D2030.10a
[Caenorhabditis elegans]
gi|21615480|emb|CAA98133.2| Hypothetical protein D2030.10a
[Caenorhabditis elegans]
Length = 1009
Score = 95.5 bits (236), Expect = 3e-19
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 1 LLKTRACRDSIAKEFIETRTRRHQRIRALQHYIRINRNRVGHMLLG 138
LLKTRACRDSIAKEFIETRTRRHQRIRALQHYIRINRNRVGHMLLG
Sbjct: 964 LLKTRACRDSIAKEFIETRTRRHQRIRALQHYIRINRNRVGHMLLG 1009
>gi|7498198|pir||T20361 hypothetical protein D2030.10 - Caenorhabditis
elegans
Length = 1014
Score = 95.5 bits (236), Expect = 3e-19
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1
Query: 1 LLKTRACRDSIAKEFIETRTRRHQRIRALQHYIRINRNRVGHMLLG 138
LLKTRACRDSIAKEFIETRTRRHQRIRALQHYIRINRNRVGHMLLG
Sbjct: 969 LLKTRACRDSIAKEFIETRTRRHQRIRALQHYIRINRNRVGHMLLG 1014
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,832,492
Number of Sequences: 1967186
Number of extensions: 1755861
Number of successful extensions: 4518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4518
length of database: 661,712,633
effective HSP length: 22
effective length of database: 618,434,541
effective search space used: 14842428984
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)