Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F36A4_5
(5559 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|21542435|sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II ... 3090 0.0
gi|7494579|pir||T29959 DNA-directed RNA polymerase II large subu... 3081 0.0
gi|32565657|ref|NP_500523.2| DNA-directed RNA polymerase II larg... 3079 0.0
gi|102468|pir||A34092 DNA-directed RNA polymerase (EC 2.7.7.6) I... 3054 0.0
gi|39580358|emb|CAE61463.1| Hypothetical protein CBG05355 [Caeno... 2968 0.0
gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit 2222 0.0
gi|133327|sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II la... 2222 0.0
gi|4505939|ref|NP_000928.1| DNA directed RNA polymerase II polyp... 2222 0.0
gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cr... 2219 0.0
gi|7434727|pir||I38186 RNA polymerase II largest subunit - human... 2214 0.0
gi|31226322|ref|XP_317690.1| ENSANGP00000010305 [Anopheles gambi... 2212 0.0
gi|6677795|ref|NP_033115.1| polymerase (RNA) II (DNA directed) p... 2201 0.0
gi|34871645|ref|XP_343923.1| similar to DNA-directed RNA polymer... 2192 0.0
gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase... 2179 0.0
gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase... 2178 0.0
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase... 2178 0.0
gi|17530899|ref|NP_511124.1| CG1554-PA [Drosophila melanogaster]... 2177 0.0
gi|279533|pir||RNFF2L DNA-directed RNA polymerase (EC 2.7.7.6) I... 2169 0.0
gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase... 2076 0.0
gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit 1950 0.0
gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit 1935 0.0
gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit [Art... 1919 0.0
gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit 1883 0.0
gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon n... 1865 0.0
gi|15233338|ref|NP_195305.1| DNA-directed RNA polymerase II larg... 1634 0.0
gi|7428072|pir||JDMU1 DNA-directed RNA polymerase (EC 2.7.7.6) I... 1627 0.0
gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana] 1622 0.0
gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsi... 1614 0.0
gi|19112465|ref|NP_595673.1| DNA-directed RNA polymerase II larg... 1589 0.0
gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster] 1579 0.0
gi|12083527|gb|AAG48836.1| similar to Arabidopsis thaliana DNA-d... 1570 0.0
gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Aca... 1557 0.0
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Cand... 1540 0.0
gi|50409953|ref|XP_456921.1| unnamed protein product [Debaryomyc... 1520 0.0
gi|50557434|ref|XP_501909.1| hypothetical protein [Yarrowia lipo... 1518 0.0
gi|49074728|ref|XP_401478.1| hypothetical protein UM03863.1 [Ust... 1503 0.0
gi|50310581|ref|XP_455310.1| unnamed protein product [Kluyveromy... 1493 0.0
gi|45187959|ref|NP_984182.1| ADR086Cp [Eremothecium gossypii] >g... 1487 0.0
gi|12642614|gb|AAK00311.1| DNA-dependent RNA polymerase II large... 1487 0.0
gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II large... 1486 0.0
gi|12642612|gb|AAK00310.1| DNA-dependent RNA polymerase II large... 1477 0.0
gi|50289967|ref|XP_447415.1| unnamed protein product [Candida gl... 1452 0.0
gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [... 1449 0.0
gi|6320061|ref|NP_010141.1| RNA polymerase II large subunit; Rpo... 1448 0.0
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Crypto... 1432 0.0
gi|21280517|gb|AAM45151.1| RNA polymerase II largest subunit [Na... 1415 0.0
gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [As... 1410 0.0
gi|49085690|ref|XP_404946.1| hypothetical protein AN0809.2 [Aspe... 1406 0.0
gi|11261194|pir||T43217 RNA polymerase (EC 2.7.7.-) II, largest ... 1394 0.0
gi|32417630|ref|XP_329293.1| hypothetical protein [Neurospora cr... 1391 0.0
gi|12642616|gb|AAK00312.1| DNA-dependent RNA polymerase II large... 1390 0.0
gi|11261182|pir||T43026 probable DNA-directed RNA polymerase (EC... 1380 0.0
gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gib... 1380 0.0
gi|12642610|gb|AAK00309.1| DNA-dependent RNA polymerase II large... 1360 0.0
gi|38104302|gb|EAA50893.1| hypothetical protein MG04652.4 [Magna... 1339 0.0
gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Ma... 1331 0.0
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,... 1326 0.0
gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Enc... 1214 0.0
gi|12642618|gb|AAK00313.1| DNA-dependent RNA polymerase II large... 1211 0.0
gi|50346858|gb|AAT75140.1| RNA polymerase 2 [Caenorhabditis rema... 1186 0.0
gi|7521936|pir||T31435 DNA-directed RNA polymerase (EC 2.7.7.6) ... 1179 0.0
gi|50346879|gb|AAT75146.1| RNA polymerase 2 [Caenorhabditis japo... 1176 0.0
gi|31127034|gb|AAF26651.2| RNA polymerase II largest subunit [Po... 1176 0.0
gi|1916670|gb|AAB51213.1| large subunit RNA polymerase II [unide... 1169 0.0
gi|50346885|gb|AAT75149.1| RNA polymerase 2 [Caenorhabditis dros... 1166 0.0
gi|31127046|gb|AAC03136.3| RNA polymerase II largest subunit [Li... 1150 0.0
gi|50346881|gb|AAT75147.1| RNA polymerase 2 [Caenorhabditis plic... 1147 0.0
gi|50346868|gb|AAT75142.1| RNA polymerase 2 [Caenorhabditis sp. ... 1145 0.0
gi|31127036|gb|AAF26656.2| RNA polymerase II largest subunit [Sc... 1132 0.0
gi|7521935|pir||T31436 DNA-directed RNA polymerase (EC 2.7.7.6) ... 1125 0.0
gi|50346887|gb|AAT75150.1| RNA polymerase 2 [Caenorhabditis sp. ... 1109 0.0
gi|50346863|gb|AAT75141.1| RNA polymersae 2 [Caenorhabditis sp. ... 1105 0.0
gi|50346883|gb|AAT75148.1| RNA polymerase 2 [Caenorhabditis sp. ... 1092 0.0
gi|1916659|gb|AAB51210.1| large subunit RNA polymerase II [Cruzn... 1079 0.0
gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit [Pe... 1072 0.0
gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Ps... 1071 0.0
gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Ze... 1069 0.0
gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Am... 1066 0.0
gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Za... 1066 0.0
gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Ny... 1065 0.0
gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cy... 1064 0.0
gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Ma... 1061 0.0
gi|13812416|ref|NP_113534.1| DNA-directed RNA polymerase II larg... 1058 0.0
gi|38232237|gb|AAR14954.1| RNA polymerase II largest subunit [Ar... 1058 0.0
gi|50346876|gb|AAT75145.1| RNA polymerase 2 [Rhabditella axei] 1058 0.0
gi|1778036|gb|AAB40621.1| RNA polymerase II large subunit 1056 0.0
gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [We... 1055 0.0
gi|7521934|pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) ... 1054 0.0
gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pi... 1054 0.0
gi|11261184|pir||T43260 RNA polymerase (EC 2.7.7.-) II - Trichom... 1052 0.0
gi|48869087|gb|AAT47141.1| RNA polymerase 2 [Prodontorhabditis w... 1046 0.0
gi|1778038|gb|AAB40622.1| RNA polymerase II large subunit 1033 0.0
gi|1916663|gb|AAB51211.1| large subunit RNA polymerase II [Mesor... 1030 0.0
gi|21280521|gb|AAM45153.1| RNA polymerase II largest subunit [Ce... 1011 0.0
gi|31127038|gb|AAF26658.2| RNA polymerase II largest subunit [Sp... 1010 0.0
gi|1916666|gb|AAB51212.1| large subunit RNA polymerase II [Terat... 1002 0.0
gi|13310932|gb|AAF36438.2| RNA polymerase II largest subunit [Le... 998 0.0
gi|31126986|gb|AAK11870.2| RNA polymerase II largest subunit [Ab... 996 0.0
gi|13183799|gb|AAK15346.1| RNA polymerase II largest subunit [Le... 976 0.0
gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leish... 974 0.0
gi|38232371|gb|AAR15021.1| RNA polymerase II largest subunit [Sc... 974 0.0
gi|22002086|gb|AAK97604.2| RNA polymerase II largest subunit [Tr... 974 0.0
gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit [Tr... 973 0.0
gi|31127010|gb|AAF26623.2| RNA polymerase II largest subunit [Ct... 973 0.0
gi|31127042|gb|AAF26663.2| RNA polymerase II largest subunit [Ta... 967 0.0
gi|31127030|gb|AAF26646.2| RNA polymerase II largest subunit [Ne... 966 0.0
gi|102082|pir||B31494 DNA-directed RNA polymerase (EC 2.7.7.6) I... 964 0.0
gi|31127024|gb|AAF26639.2| RNA polymerase II largest subunit [Li... 964 0.0
gi|31127008|gb|AAK11873.2| RNA polymerase II largest subunit [Bo... 963 0.0
gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit 963 0.0
gi|102081|pir||A31494 DNA-directed RNA polymerase (EC 2.7.7.6) I... 963 0.0
gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit 962 0.0
gi|38232323|gb|AAR14997.1| RNA polymerase II largest subunit [Ne... 962 0.0
gi|31127003|gb|AAF26621.2| RNA polymerase II largest subunit [Se... 957 0.0
gi|31127032|gb|AAF26647.2| RNA polymerase II largest subunit [Cy... 951 0.0
gi|133332|sp|P17546|RPB2_TRYBB DNA-directed RNA polymerase II la... 941 0.0
gi|133329|sp|P17545|RPB1_TRYBB DNA-directed RNA polymerase II la... 940 0.0
gi|21280519|gb|AAM45152.1| RNA polymerase II largest subunit [Oc... 908 0.0
gi|48249473|gb|AAT40981.1| RNA polymerase II largest subunit [En... 895 0.0
gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dic... 883 0.0
gi|6624239|dbj|BAA88484.1| RNA polymerase II largest subunit [Ep... 845 0.0
gi|6624241|dbj|BAA88485.1| RNA polymerase II largest subunit [Le... 840 0.0
gi|38232433|gb|AAR15052.1| RNA polymerase II largest subunit [Pe... 814 0.0
gi|31127054|gb|AAC03142.2| RNA polymerase II largest subunit [Tr... 803 0.0
gi|31127040|gb|AAF26661.2| RNA polymerase II largest subunit [To... 788 0.0
gi|99899|pir||S14183 DNA-directed RNA polymerase (EC 2.7.7.6) la... 772 0.0
gi|45501363|gb|AAH67295.1| Unknown (protein for MGC:75453) [Homo... 765 0.0
gi|13274162|emb|CAC33859.1| RNA polymerase II largest subunit [N... 747 0.0
gi|50293727|ref|XP_449275.1| unnamed protein product [Candida gl... 721 0.0
gi|50426995|ref|XP_462102.1| unnamed protein product [Debaryomyc... 713 0.0
gi|50309797|ref|XP_454912.1| unnamed protein product [Kluyveromy... 707 0.0
gi|1945435|gb|AAC49712.1| RNA polymerase II largest subunit [Spi... 706 0.0
gi|6324690|ref|NP_014759.1| RNA polymerase III large subunit; Rp... 706 0.0
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Cand... 705 0.0
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Can... 705 0.0
gi|28828616|gb|AAO51219.1| similar to Homo sapiens (Human). Poly... 701 0.0
gi|49090376|ref|XP_406649.1| hypothetical protein AN2512.2 [Aspe... 700 0.0
gi|31127028|gb|AAF26643.2| RNA polymerase II largest subunit [Ni... 699 0.0
gi|31127012|gb|AAF26625.2| RNA polymerase II largest subunit [Ca... 697 0.0
gi|13274160|emb|CAC33863.1| RNA polymerase II largest subunit [P... 696 0.0
gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Crypto... 692 0.0
gi|38232259|gb|AAR14965.1| RNA polymerase II largest subunit [Eu... 691 0.0
gi|45190855|ref|NP_985109.1| AER252Cp [Eremothecium gossypii] >g... 691 0.0
gi|38232379|gb|AAR15025.1| RNA polymerase II largest subunit [Th... 689 0.0
gi|13274097|emb|CAC33855.1| RNA polymerase II largest subunit [C... 687 0.0
gi|38232223|gb|AAR14947.1| RNA polymerase II largest subunit [Al... 687 0.0
gi|38232273|gb|AAR14972.1| RNA polymerase II largest subunit [Ha... 686 0.0
gi|31127018|gb|AAF26632.2| RNA polymerase II largest subunit [Ha... 686 0.0
gi|38232229|gb|AAR14950.1| RNA polymerase II largest subunit [Ar... 686 0.0
gi|32405384|ref|XP_323305.1| hypothetical protein [Neurospora cr... 685 0.0
gi|38232373|gb|AAR15022.1| RNA polymerase II largest subunit [Sk... 683 0.0
gi|19112298|ref|NP_595506.1| putative dna-directed rna polymeras... 682 0.0
gi|31127020|gb|AAF26631.2| RNA polymerase II largest subunit [En... 681 0.0
gi|38232265|gb|AAR14968.1| RNA polymerase II largest subunit [Fo... 674 0.0
gi|31127026|gb|AAF26640.2| RNA polymerase II largest subunit [Ma... 674 0.0
gi|34597078|gb|AAQ77114.1| RNA polymerase II largest subunit [Li... 672 0.0
gi|464671|sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II la... 672 0.0
gi|13274099|emb|CAC33856.1| RNA polymerase II largest subunit [G... 671 0.0
gi|38232333|gb|AAR15002.1| RNA polymerase II largest subunit [Ni... 671 0.0
gi|38232303|gb|AAR14987.1| RNA polymerase II largest subunit [Ly... 671 0.0
gi|31127044|gb|AAF26666.2| RNA polymerase II largest subunit [Mi... 667 0.0
gi|31127050|gb|AAC03139.2| RNA polymerase II largest subunit [Pe... 667 0.0
gi|31127016|gb|AAF26628.2| RNA polymerase II largest subunit [Eu... 667 0.0
gi|38232241|gb|AAR14956.1| RNA polymerase II largest subunit [Ch... 664 0.0
gi|38232349|gb|AAR15010.1| RNA polymerase II largest subunit [Po... 661 0.0
gi|38232279|gb|AAR14975.1| RNA polymerase II largest subunit [Le... 660 0.0
gi|38232235|gb|AAR14953.1| RNA polymerase II largest subunit [Ar... 660 0.0
gi|38232339|gb|AAR15005.1| RNA polymerase II largest subunit [Or... 660 0.0
gi|13274166|emb|CAC33858.1| RNA polymerase II largest subunit [L... 657 0.0
gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1 [Gib... 657 0.0
gi|38104101|gb|EAA50718.1| hypothetical protein MG04477.4 [Magna... 656 0.0
gi|31127022|gb|AAF26634.2| RNA polymerase II largest subunit [Hu... 655 0.0
gi|38232285|gb|AAR14978.1| RNA polymerase II largest subunit [Li... 643 0.0
gi|15920465|ref|NP_376134.1| 884aa long hypothetical DNA-directe... 639 0.0
gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase, subuni... 637 e-180
gi|38232209|gb|AAR14940.1| RNA polymerase II largest subunit [Ac... 635 e-180
gi|38232319|gb|AAR14995.1| RNA polymerase II largest subunit [Me... 635 e-180
gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit... 631 e-179
gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit... 630 e-179
gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase, subuni... 627 e-177
gi|401016|sp|P31813|RPA1_THECE DNA-directed RNA polymerase subun... 626 e-177
gi|133407|sp|P11512|RPA1_SULAC DNA-directed RNA polymerase subun... 620 e-175
gi|99252|pir||B33926 DNA-directed RNA polymerase (EC 2.7.7.6) ch... 616 e-174
gi|15679064|ref|NP_276181.1| DNA-dependent RNA polymerase, subun... 613 e-173
gi|19074431|ref|NP_585937.1| DNA-DIRECTED RNA POLYMERASE III 160... 609 e-172
gi|48840817|ref|ZP_00297743.1| COG0086: DNA-directed RNA polymer... 608 e-172
gi|31127014|gb|AAF26627.2| RNA polymerase II largest subunit [Eu... 608 e-172
gi|20090127|ref|NP_616202.1| DNA-directed RNA polymerase, subuni... 603 e-170
gi|18312086|ref|NP_558753.1| DNA-directed RNA polymerase subunit... 601 e-170
gi|21228373|ref|NP_634295.1| DNA-directed RNA polymerase subunit... 599 e-169
gi|46142319|ref|ZP_00148404.2| COG0086: DNA-directed RNA polymer... 596 e-168
gi|11499472|ref|NP_070713.1| DNA-directed RNA polymerase, subuni... 593 e-167
gi|6716459|gb|AAF26620.1| RNA polymerase II largest subunit [Arm... 593 e-167
gi|158321|gb|AAA28863.1| large subunit of RNA polymerase II 585 e-165
gi|45358926|ref|NP_988483.1| RNA polymerase, alpha subunit [Meth... 585 e-165
gi|38232389|gb|AAR15030.1| RNA polymerase II largest subunit [Tr... 577 e-163
gi|1173129|sp|P41556|RPA1_METVA DNA-directed RNA polymerase subu... 575 e-162
gi|38232355|gb|AAR15013.1| RNA polymerase II largest subunit [Pa... 570 e-160
gi|38232365|gb|AAR15018.1| RNA polymerase II largest subunit [Rh... 567 e-160
gi|14601674|ref|NP_148215.1| DNA-directed RNA polymerase subunit... 564 e-159
gi|50549343|ref|XP_502142.1| hypothetical protein [Yarrowia lipo... 564 e-159
gi|49080526|ref|XP_403771.1| hypothetical protein UM06156.1 [Ust... 561 e-158
gi|38232217|gb|AAR14944.1| RNA polymerase II largest subunit [An... 560 e-157
gi|133402|sp|P09846|RPA1_METTW DNA-directed RNA polymerase subun... 557 e-157
gi|34597072|gb|AAQ77111.1| RNA polymerase II largest subunit [Li... 556 e-156
gi|13542012|ref|NP_111700.1| DNA-directed RNA polymerase, subuni... 546 e-153
gi|133328|sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II la... 545 e-153
gi|16805266|ref|NP_473294.1| DNA-directed RNA polymerase II, put... 545 e-153
gi|16081520|ref|NP_393871.1| probable DNA-directed RNA polymeras... 544 e-152
gi|23491122|gb|EAA22733.1| RNA polymerase A/beta'/A'' subunit, p... 543 e-152
gi|38232397|gb|AAR15034.1| RNA polymerase II largest subunit [St... 539 e-151
gi|48477330|ref|YP_023036.1| DNA-directed RNA polymerase subunit... 538 e-151
gi|48852482|ref|ZP_00306668.1| COG0086: DNA-directed RNA polymer... 535 e-150
gi|39725938|ref|NP_008986.2| polymerase (RNA) III (DNA directed)... 531 e-149
gi|34876886|ref|XP_341389.1| similar to polymerase (RNA) III (DN... 531 e-149
gi|3122765|sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III ... 530 e-148
gi|39593525|emb|CAE61817.1| Hypothetical protein CBG05787 [Caeno... 528 e-148
gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III s... 526 e-147
gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 su... 526 e-147
gi|50749362|ref|XP_421603.1| PREDICTED: similar to polymerase (R... 523 e-146
gi|41615286|ref|NP_963784.1| NEQ503 [Nanoarchaeum equitans Kin4-... 518 e-145
gi|25145495|ref|NP_501127.2| RNA Polymerase, Class III (C), rna ... 518 e-145
gi|7497334|pir||T34157 hypothetical protein C42D4.8 - Caenorhabd... 518 e-145
gi|31228896|ref|XP_318130.1| ENSANGP00000017502 [Anopheles gambi... 514 e-143
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa (japonic... 506 e-141
gi|23484677|gb|EAA19924.1| RNA polymerase A/beta'/A'' subunit, p... 503 e-140
gi|34597090|gb|AAQ77120.1| RNA polymerase II largest subunit [Na... 494 e-138
gi|8777343|dbj|BAA96933.1| DNA-directed RNA polymerase II larges... 490 e-136
gi|16554525|ref|NP_444249.1| DNA-directed RNA polymerase subunit... 488 e-136
gi|25288429|pir||H84415 DNA-directed RNA polymerase subunit A [i... 488 e-136
gi|133398|sp|P15350|RPA1_HALSA DNA-directed RNA polymerase subun... 488 e-136
gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon n... 487 e-135
gi|2117914|pir||A33926 DNA-directed RNA polymerase (EC 2.7.7.6) ... 483 e-134
gi|38232417|gb|AAR15044.1| RNA polymerase II largest subunit [Ma... 479 e-133
gi|38232445|gb|AAR15058.1| RNA polymerase II largest subunit [Th... 479 e-133
gi|162223|gb|AAA30233.1| RNA polymerase III 474 e-132
gi|133355|sp|P08968|RPC1_TRYBB DNA-DIRECTED RNA POLYMERASE III L... 474 e-132
gi|29243146|emb|CAD80260.1| RNA polymerase II large subunit [Bru... 462 e-128
gi|15238597|ref|NP_200812.1| DNA-directed RNA polymerase, putati... 457 e-126
gi|15678327|ref|NP_275442.1| DNA-dependent RNA polymerase, subun... 456 e-126
gi|13111552|gb|AAK12371.1| RNA polymerase II largest subunit [Pe... 449 e-124
gi|38091170|emb|CAE46439.1| RNA polymerase II largest subunit [C... 439 e-121
gi|20094123|ref|NP_613970.1| DNA-directed RNA polymerase larges... 432 e-119
gi|38603403|dbj|BAD02847.1| DNA-dependent RNA polymerase II larg... 429 e-118
gi|38232321|gb|AAR14996.1| RNA polymerase II largest subunit [Me... 428 e-118
gi|38603409|dbj|BAD02850.1| DNA-dependent RNA polymerase II larg... 423 e-116
gi|38091158|emb|CAE46433.1| RNA polymerase II largest subunit [A... 421 e-115
gi|38603407|dbj|BAD02849.1| DNA-dependent RNA polymerase II larg... 421 e-115
gi|38232295|gb|AAR14983.1| RNA polymerase II largest subunit [Lo... 420 e-115
gi|38091160|emb|CAE46434.1| RNA polymerase II largest subunit [A... 419 e-115
gi|38603401|dbj|BAD02846.1| DNA-dependent RNA polymerase II larg... 418 e-115
gi|38603405|dbj|BAD02848.1| DNA-dependent RNA polymerase II larg... 417 e-114
gi|28564504|dbj|BAC57609.1| DNA-dependent RNA polymerase II larg... 417 e-114
gi|28564500|dbj|BAC57607.1| DNA-dependent RNA polymerase II larg... 414 e-113
gi|38232351|gb|AAR15011.1| RNA polymerase II largest subunit [Po... 413 e-113
gi|38091164|emb|CAE46436.1| RNA polymerase II largest subunit [H... 413 e-113
gi|9628206|ref|NP_042792.1| RNA polymerase subunit 1 [African sw... 413 e-113
gi|133325|sp|P28364|RPB1_EUPOC DNA-directed RNA polymerase II la... 412 e-113
gi|28564508|dbj|BAC57611.1| DNA-dependent RNA polymerase II larg... 411 e-113
gi|13274156|emb|CAC33868.1| RNA polymerase II largest subunit [T... 411 e-113
gi|38091168|emb|CAE46438.1| RNA polymerase II largest subunit [G... 410 e-112
gi|28564492|dbj|BAC57603.1| DNA-dependent RNA polymerase II larg... 410 e-112
gi|38603399|dbj|BAD02845.1| DNA-dependent RNA polymerase II larg... 408 e-112
gi|13274164|emb|CAC33861.1| RNA polymerase II largest subunit [P... 408 e-112
gi|38091172|emb|CAE46440.1| RNA polymerase II largest subunit [G... 408 e-112
gi|13274158|emb|CAC33864.1| RNA polymerase II largest subunit [P... 404 e-110
gi|38091162|emb|CAE46435.1| RNA polymerase II largest subunit [R... 403 e-110
gi|38091166|emb|CAE46437.1| RNA polymerase II largest subunit [A... 401 e-110
gi|38603395|dbj|BAD02843.1| DNA-dependent RNA polymerase II larg... 398 e-109
gi|13274170|emb|CAC33866.1| RNA polymerase II largest subunit [S... 397 e-108
gi|38232415|gb|AAR15043.1| RNA polymerase II largest subunit [Is... 397 e-108
gi|28564496|dbj|BAC57605.1| DNA-dependent RNA polymerase II larg... 395 e-108
gi|38603397|dbj|BAD02844.1| DNA-dependent RNA polymerase II larg... 394 e-107
gi|38603391|dbj|BAD02841.1| DNA-dependent RNA polymerase II larg... 393 e-107
gi|28564494|dbj|BAC57604.1| DNA-dependent RNA polymerase II larg... 392 e-107
gi|39591254|emb|CAE73307.1| Hypothetical protein CBG20734 [Caeno... 389 e-106
gi|46431960|gb|EAK91475.1| hypothetical protein CaO19.1839 [Cand... 385 e-105
gi|19113092|ref|NP_596300.1| dna-directed rna polymerase i 190 k... 384 e-104
gi|13123076|gb|AAK12766.1| RNA polymerase II largest subunit [St... 384 e-104
gi|4995|emb|CAA32887.1| unnamed protein product [Schizosaccharom... 384 e-104
gi|28564498|dbj|BAC57606.1| DNA-dependent RNA polymerase II larg... 383 e-104
gi|13812229|ref|NP_113360.1| RNA polymerase III largest subunit ... 382 e-104
gi|38603393|dbj|BAD02842.1| DNA-dependent RNA polymerase II larg... 382 e-104
gi|50312167|ref|XP_456115.1| unnamed protein product [Kluyveromy... 381 e-103
gi|6716503|gb|AAF26664.1| RNA polymerase II largest subunit [Tan... 379 e-103
gi|13274174|emb|CAC33869.1| RNA polymerase II largest subunit [V... 378 e-102
gi|49071908|ref|XP_400243.1| hypothetical protein UM02628.1 [Ust... 377 e-102
gi|44889981|emb|CAF32099.1| DNA-directed RNA polymerase i, putat... 377 e-102
gi|13123064|gb|AAK12761.1| RNA polymerase II largest subunit [so... 376 e-102
gi|13549462|gb|AAF26638.2| RNA polymerase II largest subunit [Me... 375 e-102
gi|25288405|pir||A88355 protein Y48E1A.1 [imported] - Caenorhabd... 375 e-102
gi|133352|sp|P25202|RPC1_GIALA DNA-DIRECTED RNA POLYMERASE III L... 375 e-102
gi|17537243|ref|NP_496872.1| RNA polymerase I (2N962) [Caenorhab... 375 e-102
gi|102174|pir||S22812 DNA-directed RNA polymerase (EC 2.7.7.6) I... 375 e-102
gi|18032797|gb|AAL56846.1| RNA polymerase I large subunit [Xenop... 374 e-101
gi|38102690|gb|EAA49500.1| hypothetical protein MG01158.4 [Magna... 374 e-101
gi|28850444|gb|AAO53208.1| similar to alpha (190 kDa) subunit of... 372 e-101
gi|18307453|emb|CAD21513.1| probable DNA-directed RNA polymerase... 372 e-101
gi|28564502|dbj|BAC57608.1| DNA-dependent RNA polymerase II larg... 371 e-101
gi|28564512|dbj|BAC57613.1| DNA-dependent RNA polymerase II larg... 371 e-101
gi|38232405|gb|AAR15038.1| RNA polymerase II largest subunit [Ec... 370 e-100
gi|38232291|gb|AAR14981.1| RNA polymerase II largest subunit [Li... 369 e-100
gi|45188247|ref|NP_984470.1| ADR374Cp [Eremothecium gossypii] >g... 368 1e-99
gi|28564510|dbj|BAC57612.1| DNA-dependent RNA polymerase II larg... 365 7e-99
gi|7434728|pir||T07796 DNA-directed RNA polymerase (EC 2.7.7.6) ... 363 3e-98
gi|46116898|ref|XP_384467.1| hypothetical protein FG04291.1 [Gib... 362 4e-98
gi|6716461|gb|AAF26622.1| RNA polymerase II largest subunit [Sem... 362 7e-98
gi|38232439|gb|AAR15055.1| RNA polymerase II largest subunit [Ri... 359 5e-97
gi|17647875|ref|NP_523743.1| CG10122-PA [Drosophila melanogaster... 357 2e-96
gi|32415195|ref|XP_328077.1| hypothetical protein [Neurospora cr... 356 4e-96
gi|99898|pir||S14181 DNA-directed RNA polymerase (EC 2.7.7.6) la... 353 3e-95
gi|3914818|sp|P91875|RPA1_DROME DNA-DIRECTED RNA POLYMERASE I LA... 346 4e-93
gi|23619219|ref|NP_705181.1| DNA-directed RNA polymerase 3 large... 344 1e-92
gi|47214109|emb|CAG00674.1| unnamed protein product [Tetraodon n... 343 4e-92
gi|28564490|dbj|BAC57602.1| DNA-dependent RNA polymerase II larg... 342 6e-92
gi|24642282|ref|NP_573071.1| CG17209-PA [Drosophila melanogaster... 342 8e-92
gi|133354|sp|P27625|RPC1_PLAFA DNA-DIRECTED RNA POLYMERASE III L... 341 1e-91
gi|323135|pir||A45597 DNA-directed RNA polymerase (EC 2.7.7.6) I... 341 1e-91
gi|2127864|pir||A64430 DNA-directed RNA polymerase (EC 2.7.7.6) ... 336 3e-90
gi|15669231|ref|NP_248036.1| DNA-directed RNA polymerase, subuni... 336 3e-90
gi|133316|sp|P16355|RPA1_TRYBB DNA-DIRECTED RNA POLYMERASE I LAR... 334 2e-89
gi|102080|pir||A34374 DNA-directed RNA polymerase (EC 2.7.7.6) I... 334 2e-89
gi|31544947|gb|AAH53071.1| BC053071 protein [Mus musculus] 328 7e-88
gi|50555960|ref|XP_505388.1| hypothetical protein [Yarrowia lipo... 326 3e-87
gi|28564506|dbj|BAC57610.1| DNA-dependent RNA polymerase II larg... 320 2e-85
gi|50419249|ref|XP_458147.1| unnamed protein product [Debaryomyc... 318 1e-84
gi|15230368|ref|NP_191325.1| DNA-directed RNA polymerase family ... 317 2e-84
gi|172215|gb|AAA34890.1| RNA polymerase A(I) large subunit 316 5e-84
gi|6324917|ref|NP_014986.1| RNA polymerase I subunit alpha; larg... 316 5e-84
gi|19074219|ref|NP_584825.1| DNA-DIRECTED RNA POLYMERASE I [Ence... 315 8e-84
gi|31240221|ref|XP_320524.1| ENSANGP00000008667 [Anopheles gambi... 313 2e-83
gi|49256401|gb|AAH73968.1| Unknown (protein for MGC:87965) [Homo... 310 2e-82
gi|13929086|ref|NP_113960.1| RNA polymerase 1-4; RNA polymerase ... 310 3e-82
gi|37963485|gb|AAR05866.1| RNA polymerase II largest subunit [Ar... 309 6e-82
gi|34328146|ref|NP_033114.2| RNA polymerase 1-4; RNA polymerase ... 308 7e-82
gi|26350055|dbj|BAC38667.1| unnamed protein product [Mus musculus] 308 1e-81
gi|3914808|sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I la... 308 1e-81
gi|29165712|gb|AAH49190.1| Rpo1-4 protein [Mus musculus] 308 1e-81
gi|50258580|gb|EAL21267.1| hypothetical protein CNBD3210 [Crypto... 308 1e-81
gi|50286997|ref|XP_445928.1| unnamed protein product [Candida gl... 307 2e-81
gi|7107506|gb|AAC03135.2| RNA polymerase II largest subunit [Dys... 307 2e-81
gi|15078888|ref|NP_149639.1| 176R [Invertebrate iridescent virus... 307 2e-81
gi|7661686|ref|NP_056240.1| polymerase (RNA) I polypeptide A, 19... 306 4e-81
gi|33946161|gb|AAQ55744.1| RNA polymerase II largest subunit [Pe... 305 8e-81
gi|7107508|gb|AAC03134.2| RNA polymerase II largest subunit [Aph... 304 2e-80
gi|13094500|gb|AAK11926.1| RNA polymerase II largest subunit [Pa... 303 3e-80
gi|13274168|emb|CAC33860.1| RNA polymerase II largest subunit [H... 302 7e-80
gi|37963479|gb|AAR05863.1| RNA polymerase II largest subunit [Cy... 301 1e-79
gi|37963481|gb|AAR05864.1| RNA polymerase II largest subunit [Ma... 301 1e-79
gi|38232311|gb|AAR14991.1| RNA polymerase II largest subunit [He... 300 3e-79
gi|31126959|gb|AAC03138.2| RNA polymerase II largest subunit [Na... 297 2e-78
gi|37963483|gb|AAR05865.1| RNA polymerase II largest subunit [Gi... 296 4e-78
gi|37963489|gb|AAR05868.1| RNA polymerase II largest subunit [Ny... 295 8e-78
gi|37963491|gb|AAR05869.1| RNA polymerase II largest subunit [Ze... 295 1e-77
gi|13274172|emb|CAC33862.1| RNA polymerase II largest subunit [P... 291 2e-76
gi|13122969|gb|AAK12720.1| RNA polymerase II largest subunit [Br... 287 2e-75
gi|13122981|gb|AAK12725.1| RNA polymerase II largest subunit [Ha... 285 9e-75
gi|13094464|gb|AAK11911.1| RNA polymerase II largest subunit [Or... 285 9e-75
gi|50747376|ref|XP_420851.1| PREDICTED: similar to RNA polymeras... 283 3e-74
gi|37963487|gb|AAR05867.1| RNA polymerase II largest subunit [Ep... 282 7e-74
gi|13094401|gb|AAK11884.1| RNA polymerase II largest subunit [Cr... 278 8e-73
gi|13094382|gb|AAK11876.1| RNA polymerase II largest subunit [Cr... 278 1e-72
gi|13094420|gb|AAK11892.1| RNA polymerase II largest subunit [Ge... 277 2e-72
gi|47156939|gb|AAT12325.1| DNA-directed RNA polymerase I largest... 276 5e-72
gi|13094469|gb|AAK11913.1| RNA polymerase II largest subunit [Ur... 273 3e-71
gi|6624245|dbj|BAA88487.1| RNA polymerase III largest subunit [L... 270 4e-70
gi|6624243|dbj|BAA88486.1| RNA polymerase III largest subunit [E... 265 1e-68
gi|2581932|gb|AAC47793.1| RNA polymerase II large subunit [Leish... 261 2e-67
gi|2581912|gb|AAC47783.1| RNA polymerase II large subunit [Leish... 260 3e-67
gi|5688954|dbj|BAA82753.1| largest subunit of the DNA-dependent ... 260 3e-67
gi|2581938|gb|AAC47796.1| RNA polymerase II large subunit [Leish... 258 9e-67
gi|2581918|gb|AAC47786.1| RNA polymerase II large subunit [Leish... 258 9e-67
gi|7682376|gb|AAF67243.1| RNA polymerase II large subunit [Leish... 257 2e-66
gi|2581914|gb|AAC47784.1| RNA polymerase II large subunit [Leish... 257 2e-66
gi|2581910|gb|AAC47782.1| RNA polymerase II large subunit [Leish... 256 4e-66
gi|2581934|gb|AAC47794.1| RNA polymerase II large subunit [Leish... 256 6e-66
gi|2581936|gb|AAC47795.1| RNA polymerase II large subunit [Leish... 255 7e-66
gi|48102532|ref|XP_395380.1| similar to DNA-directed RNA polymer... 255 1e-65
gi|2581926|gb|AAC47790.1| RNA polymerase II large subunit [Leish... 254 2e-65
gi|2581916|gb|AAC47785.1| RNA polymerase II large subunit [Leish... 251 2e-64
gi|2581920|gb|AAC47787.1| RNA polymerase II large subunit [Endot... 250 2e-64
gi|19881433|ref|NP_612250.1| ORF028L [infectious spleen and kidn... 250 3e-64
gi|2196942|gb|AAC03141.1| RNA polymerase II largest subunit [Scu... 247 3e-63
gi|2581924|gb|AAC47789.1| RNA polymerase II large subunit [Leish... 245 8e-63
gi|2133435|pir||S73104 DNA-directed RNA polymerase (EC 2.7.7.6) ... 244 2e-62
gi|2196946|gb|AAC03143.1| RNA polymerase II largest subunit [Von... 241 1e-61
gi|21842235|gb|AAM77743.1| RNA polymerase II subunit Rpb1 [Giard... 236 4e-60
gi|29246198|gb|EAA37804.1| GLP_228_14922_16895 [Giardia lamblia ... 236 4e-60
gi|20159751|gb|AAM12030.1| RNA polymerase III subunit RPC155-B [... 229 6e-58
gi|38232313|gb|AAR14992.1| RNA polymerase II largest subunit [He... 229 7e-58
gi|13122960|gb|AAK12717.1| RNA polymerase II largest subunit [Dy... 228 1e-57
gi|26352734|dbj|BAC39997.1| unnamed protein product [Mus musculus] 228 1e-57
gi|12275291|emb|CAC22335.1| RNA polymerase II subunit [Leishmani... 227 2e-57
gi|13122965|gb|AAK12719.1| RNA polymerase II largest subunit [Di... 227 2e-57
gi|13123083|gb|AAK12769.1| RNA polymerase II largest subunit [ta... 227 3e-57
gi|13123031|gb|AAK12747.1| RNA polymerase II largest subunit [Pa... 227 3e-57
gi|13123097|gb|AAK12775.1| RNA polymerase II largest subunit [As... 227 3e-57
gi|13111538|gb|AAK12365.1| RNA polymerase II largest subunit [Ch... 227 3e-57
gi|34597032|gb|AAQ77091.1| RNA polymerase II largest subunit [Ba... 227 3e-57
gi|755032|gb|AAA92868.1| DNA-dependent RNA polymerase largest su... 227 3e-57
gi|13358404|ref|NP_078624.1| DNA-depenent RNA polymerase largest... 227 3e-57
gi|6716484|gb|AAF26645.1| RNA polymerase II largest subunit [Nip... 226 4e-57
gi|13094423|gb|AAK11894.1| RNA polymerase II largest subunit [Ha... 226 4e-57
gi|13122904|gb|AAK12693.1| RNA polymerase II largest subunit [Ap... 226 4e-57
gi|13123010|gb|AAK12738.1| RNA polymerase II largest subunit [Ne... 226 5e-57
gi|28422598|gb|AAH44092.1| Rpc155-prov protein [Xenopus laevis] 226 5e-57
gi|13123017|gb|AAK12741.1| RNA polymerase II largest subunit [Od... 226 6e-57
gi|13122930|gb|AAK12704.1| RNA polymerase II largest subunit [Ca... 226 6e-57
gi|6716496|gb|AAF26657.1| RNA polymerase II largest subunit [Sco... 226 6e-57
gi|13094503|gb|AAK11928.1| RNA polymerase II largest subunit [Sc... 226 6e-57
gi|13122937|gb|AAK12707.1| RNA polymerase II largest subunit [Cr... 226 6e-57
gi|13094378|gb|AAK11875.1| RNA polymerase II largest subunit [Bo... 226 6e-57
gi|13123059|gb|AAK12759.1| RNA polymerase II largest subunit [Se... 225 8e-57
gi|13122911|gb|AAK12696.1| RNA polymerase II largest subunit [Am... 225 8e-57
gi|13122944|gb|AAK12710.1| RNA polymerase II largest subunit [Ce... 224 1e-56
gi|13094397|gb|AAK11883.1| RNA polymerase II largest subunit [Cy... 224 1e-56
gi|13123090|gb|AAK12772.1| RNA polymerase II largest subunit [Ze... 224 1e-56
gi|34597062|gb|AAQ77106.1| RNA polymerase II largest subunit [Ph... 224 1e-56
gi|13094489|gb|AAK11922.1| RNA polymerase II largest subunit [Po... 224 1e-56
gi|13094421|gb|AAK11893.1| RNA polymerase II largest subunit [Ge... 224 1e-56
gi|38232369|gb|AAR15020.1| RNA polymerase II largest subunit [Rh... 224 1e-56
gi|13123209|gb|AAK12823.1| RNA polymerase II largest subunit [Sc... 224 1e-56
gi|34597056|gb|AAQ77103.1| RNA polymerase II largest subunit [He... 224 2e-56
gi|34597088|gb|AAQ77119.1| RNA polymerase II largest subunit [Pl... 224 2e-56
gi|38232221|gb|AAR14946.1| RNA polymerase II largest subunit [An... 224 2e-56
gi|13123071|gb|AAK12764.1| RNA polymerase II largest subunit [Sc... 224 2e-56
gi|13123132|gb|AAK12790.1| RNA polymerase II largest subunit [Eq... 224 2e-56
gi|13094390|gb|AAK11880.1| RNA polymerase II largest subunit [Cl... 224 2e-56
gi|13122918|gb|AAK12699.1| RNA polymerase II largest subunit [Ca... 224 2e-56
gi|13122970|gb|AAK12721.1| RNA polymerase II largest subunit [Br... 224 2e-56
gi|13094524|gb|AAK11937.1| RNA polymerase II largest subunit [Sc... 224 2e-56
gi|13094460|gb|AAK11910.1| RNA polymerase II largest subunit [Ox... 224 2e-56
gi|13122989|gb|AAK12729.1| RNA polymerase II largest subunit [He... 224 2e-56
gi|13123038|gb|AAK12750.1| RNA polymerase II largest subunit [Ca... 224 2e-56
gi|34597068|gb|AAQ77109.1| RNA polymerase II largest subunit [La... 224 2e-56
gi|13094531|gb|AAK11940.1| RNA polymerase II largest subunit [St... 224 2e-56
gi|12275282|emb|CAC22339.1| RNA polymerase II subunit [Leishmani... 224 2e-56
gi|6716491|gb|AAF26652.1| RNA polymerase II largest subunit [Pol... 224 2e-56
gi|13111531|gb|AAK12362.1| RNA polymerase II largest subunit [En... 224 2e-56
gi|13094383|gb|AAK11877.1| RNA polymerase II largest subunit [Cr... 224 2e-56
gi|13094402|gb|AAK11885.1| RNA polymerase II largest subunit [Cr... 224 2e-56
gi|13094437|gb|AAK11900.1| RNA polymerase II largest subunit [Op... 224 2e-56
gi|13123024|gb|AAK12744.1| RNA polymerase II largest subunit [pa... 223 3e-56
gi|38232435|gb|AAR15053.1| RNA polymerase II largest subunit [Pe... 223 3e-56
gi|34597114|gb|AAQ77132.1| RNA polymerase II largest subunit [Si... 223 4e-56
gi|34597044|gb|AAQ77097.1| RNA polymerase II largest subunit [Do... 223 4e-56
gi|38232253|gb|AAR14962.1| RNA polymerase II largest subunit [Co... 223 4e-56
gi|34597096|gb|AAQ77123.1| RNA polymerase II largest subunit [Ri... 223 5e-56
gi|13094482|gb|AAK11919.1| RNA polymerase II largest subunit [Pr... 222 7e-56
gi|13123139|gb|AAK12793.1| RNA polymerase II largest subunit [Go... 222 7e-56
gi|34597120|gb|AAQ77135.1| RNA polymerase II largest subunit [St... 222 7e-56
gi|38232227|gb|AAR14949.1| RNA polymerase II largest subunit [Al... 222 9e-56
gi|38232347|gb|AAR15009.1| RNA polymerase II largest subunit [Pe... 222 9e-56
gi|13094496|gb|AAK11925.1| RNA polymerase II largest subunit [Pl... 221 1e-55
gi|13122958|gb|AAK12716.1| RNA polymerase II largest subunit [Di... 221 2e-55
gi|38232361|gb|AAR15016.1| RNA polymerase II largest subunit [Pe... 221 2e-55
gi|38232317|gb|AAR14994.1| RNA polymerase II largest subunit [He... 221 2e-55
gi|6716501|gb|AAF26662.1| RNA polymerase II largest subunit [Tom... 221 2e-55
gi|34597108|gb|AAQ77129.1| RNA polymerase II largest subunit [St... 221 2e-55
gi|38232429|gb|AAR15050.1| RNA polymerase II largest subunit [Oo... 220 3e-55
gi|13094545|gb|AAK11946.1| RNA polymerase II largest subunit [Sy... 220 3e-55
gi|13094416|gb|AAK11891.1| RNA polymerase II largest subunit [Gl... 220 3e-55
gi|13094501|gb|AAK11927.1| RNA polymerase II largest subunit [Pa... 220 3e-55
gi|13111550|gb|AAK12370.1| RNA polymerase II largest subunit [Ne... 220 3e-55
gi|38232233|gb|AAR14952.1| RNA polymerase II largest subunit [Ar... 220 3e-55
gi|6716494|gb|AAF26655.1| RNA polymerase II largest subunit [Scu... 220 3e-55
gi|13123003|gb|AAK12735.1| RNA polymerase II largest subunit [Id... 220 3e-55
gi|6716488|gb|AAF26649.1| RNA polymerase II largest subunit [Cyp... 219 5e-55
gi|38232385|gb|AAR15028.1| RNA polymerase II largest subunit [Tr... 219 5e-55
gi|38232245|gb|AAR14958.1| RNA polymerase II largest subunit [Ch... 219 5e-55
gi|38232283|gb|AAR14977.1| RNA polymerase II largest subunit [Le... 219 5e-55
gi|6716469|gb|AAF26630.1| RNA polymerase II largest subunit [Eum... 219 5e-55
gi|38232249|gb|AAR14960.1| RNA polymerase II largest subunit [Ct... 219 5e-55
gi|38232337|gb|AAR15004.1| RNA polymerase II largest subunit [Ni... 219 6e-55
gi|38232343|gb|AAR15007.1| RNA polymerase II largest subunit [Or... 219 6e-55
gi|38232213|gb|AAR14942.1| RNA polymerase II largest subunit [Ac... 219 6e-55
gi|6716481|gb|AAF26642.1| RNA polymerase II largest subunit [Mac... 219 6e-55
gi|13122951|gb|AAK12713.1| RNA polymerase II largest subunit [Ch... 219 8e-55
gi|34597050|gb|AAQ77100.1| RNA polymerase II largest subunit [Gl... 219 8e-55
gi|38232263|gb|AAR14967.1| RNA polymerase II largest subunit [Eu... 218 1e-54
gi|12275288|emb|CAC22337.1| RNA polymerase II subunit [Leishmani... 218 1e-54
gi|38232269|gb|AAR14970.1| RNA polymerase II largest subunit [Fo... 218 2e-54
gi|6716499|gb|AAF26660.1| RNA polymerase II largest subunit [Spe... 217 2e-54
gi|38232401|gb|AAR15036.1| RNA polymerase II largest subunit [St... 217 3e-54
gi|38232327|gb|AAR14999.1| RNA polymerase II largest subunit [Ne... 217 3e-54
gi|38232301|gb|AAR14986.1| RNA polymerase II largest subunit [Lo... 216 4e-54
gi|18734|emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max] 216 5e-54
gi|6716475|gb|AAF26636.1| RNA polymerase II largest subunit [Hut... 216 7e-54
gi|38232257|gb|AAR14964.1| RNA polymerase II largest subunit [Eu... 215 9e-54
gi|38232331|gb|AAR15001.1| RNA polymerase II largest subunit [Ne... 215 1e-53
gi|13111543|gb|AAK12367.1| RNA polymerase II largest subunit [Mi... 214 1e-53
gi|38232307|gb|AAR14989.1| RNA polymerase II largest subunit [Ly... 214 1e-53
gi|38232289|gb|AAR14980.1| RNA polymerase II largest subunit [Li... 214 2e-53
gi|99897|pir||S14182 DNA-directed RNA polymerase (EC 2.7.7.6) la... 213 3e-53
gi|38232377|gb|AAR15024.1| RNA polymerase II largest subunit [Sk... 213 4e-53
gi|133399|sp|P15349|RPA1_HALMO DNA-directed RNA polymerase subun... 209 5e-52
gi|43621|emb|CAA40431.1| A subunit [Halococcus morrhuae] 209 5e-52
gi|38232443|gb|AAR15057.1| RNA polymerase II largest subunit [Ri... 207 2e-51
gi|38232423|gb|AAR15047.1| RNA polymerase II largest subunit [Ma... 206 5e-51
gi|38232451|gb|AAR15061.1| RNA polymerase II largest subunit [Th... 205 9e-51
>gi|21542435|sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II
largest subunit
gi|14574184|gb|AAA96158.2| Amanitin resistant protein 1
[Caenorhabditis elegans]
Length = 1852
Score = 3090 bits (8010), Expect = 0.0
Identities = 1541/1605 (96%), Positives = 1541/1605 (96%)
Frame = +1
Query: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 180
MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI
Sbjct: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 60
Query: 181 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 360
DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 120
Query: 361 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRY 540
VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAA VAGGCGRY
Sbjct: 121 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRY 180
Query: 541 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE 720
QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE
Sbjct: 181 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE 240
Query: 721 WMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 900
WMICT TFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD
Sbjct: 241 WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 300
Query: 901 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 1080
VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV
Sbjct: 301 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 360
Query: 1081 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR 1260
ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR
Sbjct: 361 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR 420
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS
Sbjct: 421 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 480
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK
Sbjct: 481 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 540
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP
Sbjct: 541 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 600
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS
Sbjct: 601 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 660
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG
Sbjct: 661 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 720
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNF INISQVIACVGQ
Sbjct: 721 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQ 780
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT
Sbjct: 781 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 840
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK
Sbjct: 841 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 900
Query: 2701 PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIF 2880
PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIF
Sbjct: 901 PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIF 960
Query: 2881 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 3060
PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS
Sbjct: 961 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 1020
Query: 3061 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 3240
KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL
Sbjct: 1021 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 1080
Query: 3241 AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD 3420
AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD
Sbjct: 1081 AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD 1140
Query: 3421 PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPW 3600
PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPW
Sbjct: 1141 PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPW 1200
Query: 3601 LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQ 3780
LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQ
Sbjct: 1201 LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQ 1260
Query: 3781 EEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVA 3960
EEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVA
Sbjct: 1261 EEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVA 1320
Query: 3961 DWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSY 4140
DWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSY
Sbjct: 1321 DWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSY 1380
Query: 4141 VNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVK 4320
VNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVK
Sbjct: 1381 VNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVK 1440
Query: 4321 GVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPA 4500
GVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPA
Sbjct: 1441 GVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPA 1500
Query: 4501 HSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGAL 4680
HSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGAL
Sbjct: 1501 HSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGAL 1560
Query: 4681 SPRTPSYGGMSPGVYSPSSPQFXXXXXXXXXXXXXXXXXXXAAGQ 4815
SPRTPSYGGMSPGVYSPSSPQF AAGQ
Sbjct: 1561 SPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQ 1605
Score = 53.5 bits (127), Expect = 6e-05
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNE--GG 4641
SPS SP++SP + +PT +SPT+ SP +SP T SP E GG
Sbjct: 1658 SPSYSPSSPSYSPSSPRYSPT--SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGG 1715
Query: 4642 WSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP+SP SP +P+Y SP YSP+SPQ+
Sbjct: 1716 YSPSSP-----KYSPSSPTYSPTSPS-YSPTSPQY 1744
Score = 50.8 bits (120), Expect = 4e-04
Identities = 40/112 (35%), Positives = 54/112 (47%), Gaps = 4/112 (3%)
Frame = +1
Query: 4423 PQNVVMGGGFYGSFAGSPSNREFS---PAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGF 4590
P+ GG G + SPS+ +FS P +SP + +PT A SP + SP +
Sbjct: 1562 PRTPSYGGMSPGVY--SPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSY 1619
Query: 4591 SPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP + SP +SP SP + SP +PSY SP YSPSSP +
Sbjct: 1620 SPTSPSYSPTSP----SYSPTSP-----SYSPTSPSYSPTSPS-YSPSSPSY 1661
Score = 50.4 bits (119), Expect = 5e-04
Identities = 35/94 (37%), Positives = 50/94 (52%), Gaps = 2/94 (2%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPFNEGGW 4644
SP++ +SP SP S +PTY+ + +SPT+ G G+SP+ +SP +
Sbjct: 1676 SPTSPTYSPT-SPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSP----TY 1730
Query: 4645 SPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP SP + SP +P Y SP YSPSSP +
Sbjct: 1731 SPTSP-----SYSPTSPQYSPTSP-QYSPSSPTY 1758
Score = 39.7 bits (91), Expect = 0.84
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP--------GAGFSPAGNT---DGG 4617
SPS+ ++P+ +N ++ +SPT+ SP +SP T
Sbjct: 1752 SPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPS 1811
Query: 4618 ASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P +SP SP SP +P+Y SP YSPSSP +
Sbjct: 1812 EQPGTSAQYSPTSP-----TYSPSSPTYSPASPS-YSPSSPTY 1848
>gi|7494579|pir||T29959 DNA-directed RNA polymerase II large subunit
ama-1 - Caenorhabditis elegans
Length = 1862
Score = 3081 bits (7989), Expect = 0.0
Identities = 1541/1615 (95%), Positives = 1541/1615 (95%), Gaps = 10/1615 (0%)
Frame = +1
Query: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 180
MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI
Sbjct: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 60
Query: 181 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 360
DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 120
Query: 361 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRY 540
VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAA VAGGCGRY
Sbjct: 121 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRY 180
Query: 541 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE 720
QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE
Sbjct: 181 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE 240
Query: 721 WMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 900
WMICT TFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD
Sbjct: 241 WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 300
Query: 901 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 1080
VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV
Sbjct: 301 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 360
Query: 1081 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR 1260
ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR
Sbjct: 361 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR 420
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS
Sbjct: 421 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 480
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK
Sbjct: 481 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 540
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP
Sbjct: 541 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 600
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS
Sbjct: 601 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 660
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG
Sbjct: 661 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 720
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNF INISQVIACVGQ
Sbjct: 721 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQ 780
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT
Sbjct: 781 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 840
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK
Sbjct: 841 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 900
Query: 2701 PNNAVFERDFR----------MDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
PNNAVFERDFR MDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE
Sbjct: 901 PNNAVFERDFRVSVAQNAIKLMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 960
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 3030
EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL
Sbjct: 961 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 1020
Query: 3031 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 3210
IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI
Sbjct: 1021 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 1080
Query: 3211 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 3390
AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT
Sbjct: 1081 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 1140
Query: 3391 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 3570
VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP
Sbjct: 1141 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 1200
Query: 3571 DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 3750
DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR
Sbjct: 1201 DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 1260
Query: 3751 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 3930
IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII
Sbjct: 1261 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 1320
Query: 3931 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 4110
TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM
Sbjct: 1321 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 1380
Query: 4111 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 4290
DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA
Sbjct: 1381 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 1440
Query: 4291 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG 4470
AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG
Sbjct: 1441 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG 1500
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP
Sbjct: 1501 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 1560
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFXXXXXXXXXXXXXXXXXXXAAGQ 4815
ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF AAGQ
Sbjct: 1561 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQ 1615
Score = 53.5 bits (127), Expect = 6e-05
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNE--GG 4641
SPS SP++SP + +PT +SPT+ SP +SP T SP E GG
Sbjct: 1668 SPSYSPSSPSYSPSSPRYSPT--SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGG 1725
Query: 4642 WSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP+SP SP +P+Y SP YSP+SPQ+
Sbjct: 1726 YSPSSP-----KYSPSSPTYSPTSPS-YSPTSPQY 1754
Score = 50.8 bits (120), Expect = 4e-04
Identities = 40/112 (35%), Positives = 54/112 (47%), Gaps = 4/112 (3%)
Frame = +1
Query: 4423 PQNVVMGGGFYGSFAGSPSNREFS---PAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGF 4590
P+ GG G + SPS+ +FS P +SP + +PT A SP + SP +
Sbjct: 1572 PRTPSYGGMSPGVY--SPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSY 1629
Query: 4591 SPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP + SP +SP SP + SP +PSY SP YSPSSP +
Sbjct: 1630 SPTSPSYSPTSP----SYSPTSP-----SYSPTSPSYSPTSPS-YSPSSPSY 1671
Score = 50.4 bits (119), Expect = 5e-04
Identities = 35/94 (37%), Positives = 50/94 (52%), Gaps = 2/94 (2%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPFNEGGW 4644
SP++ +SP SP S +PTY+ + +SPT+ G G+SP+ +SP +
Sbjct: 1686 SPTSPTYSPT-SPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSP----TY 1740
Query: 4645 SPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP SP + SP +P Y SP YSPSSP +
Sbjct: 1741 SPTSP-----SYSPTSPQYSPTSP-QYSPSSPTY 1768
Score = 39.7 bits (91), Expect = 0.84
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP--------GAGFSPAGNT---DGG 4617
SPS+ ++P+ +N ++ +SPT+ SP +SP T
Sbjct: 1762 SPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPS 1821
Query: 4618 ASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P +SP SP SP +P+Y SP YSPSSP +
Sbjct: 1822 EQPGTSAQYSPTSP-----TYSPSSPTYSPASPS-YSPSSPTY 1858
>gi|32565657|ref|NP_500523.2| DNA-directed RNA polymerase II largest
subunit, AMAnitin resistant AMA-1 (205.0 kD) (ama-1)
[Caenorhabditis elegans]
Length = 1862
Score = 3079 bits (7982), Expect = 0.0
Identities = 1540/1615 (95%), Positives = 1540/1615 (95%), Gaps = 10/1615 (0%)
Frame = +1
Query: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 180
MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI
Sbjct: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 60
Query: 181 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 360
DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 120
Query: 361 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRY 540
VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAA VAGGCGRY
Sbjct: 121 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRY 180
Query: 541 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE 720
QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAER LEVFQQITDEDILVIGMDPQFARPE
Sbjct: 181 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERDLEVFQQITDEDILVIGMDPQFARPE 240
Query: 721 WMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 900
WMICT TFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD
Sbjct: 241 WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 300
Query: 901 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 1080
VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV
Sbjct: 301 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 360
Query: 1081 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR 1260
ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR
Sbjct: 361 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR 420
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS
Sbjct: 421 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 480
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK
Sbjct: 481 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 540
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP
Sbjct: 541 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 600
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS
Sbjct: 601 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 660
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG
Sbjct: 661 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 720
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNF INISQVIACVGQ
Sbjct: 721 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQ 780
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT
Sbjct: 781 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 840
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK
Sbjct: 841 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 900
Query: 2701 PNNAVFERDFR----------MDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
PNNAVFERDFR MDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE
Sbjct: 901 PNNAVFERDFRVSVAQNAIKLMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 960
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 3030
EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL
Sbjct: 961 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 1020
Query: 3031 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 3210
IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI
Sbjct: 1021 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 1080
Query: 3211 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 3390
AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT
Sbjct: 1081 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 1140
Query: 3391 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 3570
VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP
Sbjct: 1141 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 1200
Query: 3571 DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 3750
DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR
Sbjct: 1201 DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 1260
Query: 3751 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 3930
IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII
Sbjct: 1261 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 1320
Query: 3931 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 4110
TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM
Sbjct: 1321 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 1380
Query: 4111 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 4290
DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA
Sbjct: 1381 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 1440
Query: 4291 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG 4470
AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG
Sbjct: 1441 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG 1500
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP
Sbjct: 1501 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 1560
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFXXXXXXXXXXXXXXXXXXXAAGQ 4815
ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF AAGQ
Sbjct: 1561 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQ 1615
Score = 53.5 bits (127), Expect = 6e-05
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNE--GG 4641
SPS SP++SP + +PT +SPT+ SP +SP T SP E GG
Sbjct: 1668 SPSYSPSSPSYSPSSPRYSPT--SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGG 1725
Query: 4642 WSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP+SP SP +P+Y SP YSP+SPQ+
Sbjct: 1726 YSPSSP-----KYSPSSPTYSPTSPS-YSPTSPQY 1754
Score = 50.8 bits (120), Expect = 4e-04
Identities = 40/112 (35%), Positives = 54/112 (47%), Gaps = 4/112 (3%)
Frame = +1
Query: 4423 PQNVVMGGGFYGSFAGSPSNREFS---PAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGF 4590
P+ GG G + SPS+ +FS P +SP + +PT A SP + SP +
Sbjct: 1572 PRTPSYGGMSPGVY--SPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSY 1629
Query: 4591 SPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP + SP +SP SP + SP +PSY SP YSPSSP +
Sbjct: 1630 SPTSPSYSPTSP----SYSPTSP-----SYSPTSPSYSPTSPS-YSPSSPSY 1671
Score = 50.4 bits (119), Expect = 5e-04
Identities = 35/94 (37%), Positives = 50/94 (52%), Gaps = 2/94 (2%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPFNEGGW 4644
SP++ +SP SP S +PTY+ + +SPT+ G G+SP+ +SP +
Sbjct: 1686 SPTSPTYSPT-SPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSP----TY 1740
Query: 4645 SPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP SP + SP +P Y SP YSPSSP +
Sbjct: 1741 SPTSP-----SYSPTSPQYSPTSP-QYSPSSPTY 1768
Score = 39.7 bits (91), Expect = 0.84
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP--------GAGFSPAGNT---DGG 4617
SPS+ ++P+ +N ++ +SPT+ SP +SP T
Sbjct: 1762 SPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPS 1821
Query: 4618 ASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P +SP SP SP +P+Y SP YSPSSP +
Sbjct: 1822 EQPGTSAQYSPTSP-----TYSPSSPTYSPASPS-YSPSSPTY 1858
>gi|102468|pir||A34092 DNA-directed RNA polymerase (EC 2.7.7.6) II
large chain - Caenorhabditis elegans
gi|156405|gb|AAA28126.1| RNA polymerase II
Length = 1859
Score = 3054 bits (7918), Expect = 0.0
Identities = 1531/1615 (94%), Positives = 1532/1615 (94%), Gaps = 10/1615 (0%)
Frame = +1
Query: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 180
MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI
Sbjct: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 60
Query: 181 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 360
DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 120
Query: 361 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRY 540
VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAA VAGGCGRY
Sbjct: 121 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRY 180
Query: 541 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE 720
QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAER LEVFQQITDEDILVIGMDPQFARPE
Sbjct: 181 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERDLEVFQQITDEDILVIGMDPQFARPE 240
Query: 721 WMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 900
WMICT TFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD
Sbjct: 241 WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 300
Query: 901 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 1080
VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV
Sbjct: 301 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 360
Query: 1081 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR 1260
ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR
Sbjct: 361 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLR 420
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS
Sbjct: 421 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 480
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK
Sbjct: 481 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 540
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP
Sbjct: 541 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 600
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS
Sbjct: 601 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 660
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG
Sbjct: 661 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 720
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNF INISQVIACVGQ
Sbjct: 721 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQ 780
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT
Sbjct: 781 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 840
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK
Sbjct: 841 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 900
Query: 2701 PNNAVFERDFR----------MDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
PNNAVFERDFR MDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE
Sbjct: 901 PNNAVFERDFRVSVAQNAIKLMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 960
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 3030
EDRRLLRK FPRGDAKIVLPCNL RLIWNAQKIFKVDLR VNLSPLHVISGVRELSKKL
Sbjct: 961 EDRRLLRKDFPRGDAKIVLPCNLLRLIWNAQKIFKVDLRNAVNLSPLHVISGVRELSKKL 1020
Query: 3031 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 3210
IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI
Sbjct: 1021 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 1080
Query: 3211 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 3390
AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT
Sbjct: 1081 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 1140
Query: 3391 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 3570
VFLTGAAAKDPEKAKDVLCKLEHTT VTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP
Sbjct: 1141 VFLTGAAAKDPEKAKDVLCKLEHTT---VTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 1197
Query: 3571 DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 3750
DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR
Sbjct: 1198 DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 1257
Query: 3751 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 3930
IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII
Sbjct: 1258 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 1317
Query: 3931 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 4110
TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM
Sbjct: 1318 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 1377
Query: 4111 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 4290
DNVISFDGSYVNYRHLALLCDVMTAKGHLMA +RHGINRQEVGALMRCSFEETVDILMEA
Sbjct: 1378 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAYSRHGINRQEVGALMRCSFEETVDILMEA 1437
Query: 4291 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG 4470
AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG
Sbjct: 1438 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG 1497
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP
Sbjct: 1498 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 1557
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFXXXXXXXXXXXXXXXXXXXAAGQ 4815
ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF AAGQ
Sbjct: 1558 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQ 1612
Score = 53.5 bits (127), Expect = 6e-05
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNE--GG 4641
SPS SP++SP + +PT +SPT+ SP +SP T SP E GG
Sbjct: 1665 SPSYSPSSPSYSPSSPRYSPT--SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGG 1722
Query: 4642 WSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP+SP SP +P+Y SP YSP+SPQ+
Sbjct: 1723 YSPSSP-----KYSPSSPTYSPTSPS-YSPTSPQY 1751
Score = 50.8 bits (120), Expect = 4e-04
Identities = 40/112 (35%), Positives = 54/112 (47%), Gaps = 4/112 (3%)
Frame = +1
Query: 4423 PQNVVMGGGFYGSFAGSPSNREFS---PAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGF 4590
P+ GG G + SPS+ +FS P +SP + +PT A SP + SP +
Sbjct: 1569 PRTPSYGGMSPGVY--SPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSY 1626
Query: 4591 SPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP + SP +SP SP + SP +PSY SP YSPSSP +
Sbjct: 1627 SPTSPSYSPTSP----SYSPTSP-----SYSPTSPSYSPTSPS-YSPSSPSY 1668
Score = 50.4 bits (119), Expect = 5e-04
Identities = 35/94 (37%), Positives = 50/94 (52%), Gaps = 2/94 (2%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPFNEGGW 4644
SP++ +SP SP S +PTY+ + +SPT+ G G+SP+ +SP +
Sbjct: 1683 SPTSPTYSPT-SPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSP----TY 1737
Query: 4645 SPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP SP + SP +P Y SP YSPSSP +
Sbjct: 1738 SPTSP-----SYSPTSPQYSPTSP-QYSPSSPTY 1765
Score = 39.7 bits (91), Expect = 0.84
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP--------GAGFSPAGNT---DGG 4617
SPS+ ++P+ +N ++ +SPT+ SP +SP T
Sbjct: 1759 SPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPS 1818
Query: 4618 ASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P +SP SP SP +P+Y SP YSPSSP +
Sbjct: 1819 EQPGTSAQYSPTSP-----TYSPSSPTYSPASPS-YSPSSPTY 1855
>gi|39580358|emb|CAE61463.1| Hypothetical protein CBG05355
[Caenorhabditis briggsae]
Length = 1853
Score = 2968 bits (7695), Expect = 0.0
Identities = 1481/1588 (93%), Positives = 1510/1588 (94%), Gaps = 6/1588 (0%)
Frame = +1
Query: 1 MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI 180
MALVGVDFQAPLR V RVQFGILGPEEIKRMSVAHVEFPEVYENGKPK+GGLMDPRQGVI
Sbjct: 1 MALVGVDFQAPLRTVCRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKMGGLMDPRQGVI 60
Query: 181 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 360
DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTK+LKILRCVCFYCGRLLIDK+ PR
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPR 120
Query: 361 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRY 540
V++ILKKT N KKRL +IYDLCK+KSVCEGAA V GCGRY
Sbjct: 121 VMDILKKTSGNPKKRLALIYDLCKSKSVCEGAAEKEDGLPDDMDDPMNEGKKVPAGCGRY 180
Query: 541 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE 720
QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVF+QITDEDILVIGMDPQFARPE
Sbjct: 181 QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQITDEDILVIGMDPQFARPE 240
Query: 721 WMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 900
WMICT TFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD
Sbjct: 241 WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 300
Query: 901 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 1080
VRLLQ+HVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV
Sbjct: 301 VRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 360
Query: 1081 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGAR 1248
ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK ENGAR
Sbjct: 361 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGAR 420
Query: 1249 VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL 1428
VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL
Sbjct: 421 VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL 480
Query: 1429 SVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVR 1608
SVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVR
Sbjct: 481 SVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVR 540
Query: 1609 MMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTH 1788
MMTKRD+FIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTH
Sbjct: 541 MMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTH 600
Query: 1789 STHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAA 1968
STHPDSEDSGPYKWISPGDTKV+IEHGELLSGIVCSKTVGKSAGNLLHVV LELG+EIAA
Sbjct: 601 STHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAA 660
Query: 1969 NFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLE 2148
NFYSHIQTVINAWL+REGHTIGIGDTIADQ+TYLDIQNTIRKAKQDVVDVIEKAHNDDLE
Sbjct: 661 NFYSHIQTVINAWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKAHNDDLE 720
Query: 2149 PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIA 2328
PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNF INISQVIA
Sbjct: 721 PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIA 780
Query: 2329 CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 2508
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG
Sbjct: 781 CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 840
Query: 2509 LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNM 2688
LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNM
Sbjct: 841 LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNM 900
Query: 2689 PTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL 2868
PTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQE++DGISLVESEWSQLEEDRRLL
Sbjct: 901 PTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQEAQDGISLVESEWSQLEEDRRLL 960
Query: 2869 RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGN 3048
RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVI+GVRELSKKLIIVSGN
Sbjct: 961 RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGN 1020
Query: 3049 DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEM 3228
DEISKQAQYNATLLMNILLRSTLCTK MCT +KLN+EAFDWLLGEIE+RFQQAIAQPGEM
Sbjct: 1021 DEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEM 1080
Query: 3229 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGA 3408
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK LKTPSLTVFLTGA
Sbjct: 1081 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGA 1140
Query: 3409 AAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR 3588
AAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDL+R
Sbjct: 1141 AAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTR 1200
Query: 3589 TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK 3768
TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFG DVHTIYTDDNAEKLVFRLRIAGEDK
Sbjct: 1201 TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIAGEDK 1260
Query: 3769 G-EAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGG 3945
G E QEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGG
Sbjct: 1261 GAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGG 1320
Query: 3946 FKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVIS 4125
FK+VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRK+IE+EMDNVIS
Sbjct: 1321 FKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSIEKEMDNVIS 1380
Query: 4126 FDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAE 4305
FDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA+VHAE
Sbjct: 1381 FDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEASVHAE 1440
Query: 4306 EDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFY-GSFAGSPSN 4482
DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK+GMEIPQNVVMG G Y G FAGSPS
Sbjct: 1441 VDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGAGIYGGGFAGSPS- 1499
Query: 4483 REFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPG 4662
REFSPAHSPWNSGVTP Y+G WSP TGGMSP AGFSPAGN DGGASPFNEGGWSPASPG
Sbjct: 1500 REFSPAHSPWNSGVTPNYSG-PWSP-TGGMSPSAGFSPAGNLDGGASPFNEGGWSPASPG 1557
Query: 4663 DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
DPLGALSPRTP+YGGMSPGVYSP+SP F
Sbjct: 1558 DPLGALSPRTPAYGGMSPGVYSPASPGF 1585
Score = 48.9 bits (115), Expect = 0.001
Identities = 35/95 (36%), Positives = 49/95 (50%), Gaps = 3/95 (3%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAG-FSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP + +SP T SP +S
Sbjct: 1641 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPSSPRYSPTSPTYSPTSPT----YS 1694
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGV--YSPSSPQF 4746
P SP SP +P+Y SP YSPSSP++
Sbjct: 1695 PTSP-----TYSPTSPTYSPTSPSYEGYSPSSPKY 1724
Score = 47.4 bits (111), Expect = 0.004
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +1
Query: 4453 YGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPF 4629
+G SPS SP++SP + +PT ++SPT+ SP +SP + SP
Sbjct: 1607 HGQSPVSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP- 1663
Query: 4630 NEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP SP + SP +P Y SP YSP+SP +
Sbjct: 1664 ---SYSPTSP-----SYSPSSPRYSPTSP-TYSPTSPTY 1693
Score = 46.6 bits (109), Expect = 0.007
Identities = 35/102 (34%), Positives = 50/102 (48%), Gaps = 3/102 (2%)
Frame = +1
Query: 4450 FYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASP 4626
+ G SP SP +SP + +PT +SPT+ SP + ++P+ T SP
Sbjct: 1714 YEGYSPSSPKYSPSSPTYSPTSPSYSPT--SPQYSPTSPQYSPSSPTYTPSSPTYNPTSP 1771
Query: 4627 --FNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
F+ +SP SP SP +PSY SP YSP+SP +
Sbjct: 1772 RAFSSPQYSPTSP-----TYSPTSPSYTPSSP-QYSPTSPTY 1807
Score = 40.4 bits (93), Expect = 0.49
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP--------GAGFSPAGNT---DGG 4617
SPS+ ++P+ +N ++ +SPT+ SP +SP T
Sbjct: 1753 SPSSPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPA 1812
Query: 4618 ASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P +SP+SP SP +P+Y SP YSPSSP +
Sbjct: 1813 DQPGTSNQYSPSSP-----TYSPSSPTYSPASPS-YSPSSPTY 1849
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit
Length = 1966
Score = 2222 bits (5759), Expect = 0.0
Identities = 1089/1595 (68%), Positives = 1311/1595 (81%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D PLR + RVQFG+L P+E+KRMSV +++PE E G+PKLGGLMDPRQGVI+R G
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH+ELAKPVFH+GFL KT+K+LRCVCF+C +LL+D + P++ +I
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQP 546
L K+ KKRLT +YDLCK K++CEG G GCGRYQP
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 547 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 726
RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ V+GM+P++ARPEWM
Sbjct: 190 RIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 727 ICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
I T GSA+NQDDLTHKL+DI+K N QL+RNE NGAAAHV+ +DV+
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQFHVAT+VDN +PGLP A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
DPNL ID VGVPR+IA N+TF EIVTPFN+D+LQELV RG++QYPGAK +NG R+D
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR+HP+ +DLHLQ GY+VERHM DGDI++FNRQPTLHKMSMMGHRV+ILPWSTFR+NLSV
Sbjct: 429 LRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 488
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
T+PYNADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR
Sbjct: 489 TTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKF 548
Query: 1615 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 1794
TKRDVF++ +M+LLM+L TWDGKVPQPAILKP+PLWTGKQ+FSLIIPG++N +RTHST
Sbjct: 549 TKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHST 608
Query: 1795 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 1974
HPD EDSGPYK ISPGDTKV++E+GEL+ GI+C K++G SAG+L+H+ LE+G++I F
Sbjct: 609 HPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLF 668
Query: 1975 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 2154
YS+IQTVIN WL+ EGHTIGIGD+IAD TY DIQNTI+KAKQDV++VIEKAHN++LEPT
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 2155 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACV 2334
PGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF INISQVIA V
Sbjct: 729 PGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 2335 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 2514
GQQNVEGKRIPFGF+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 2515 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 2694
DTAVKTAETGYIQRRLIK+MESVMV YD TVRNS+ Q+VQLRYGEDGL G VE QN+ T
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLAT 908
Query: 2695 MKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK 2874
+KP+N FE+ FR D T+ + LR+ ED+V+++ + + +E E+ ++ EDR +LR
Sbjct: 909 LKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV 968
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
IFP GD+K+VLPCNL R+IWNAQKIF ++ R P +L P+ V+ GV+ELSKKL+IV+G+D
Sbjct: 969 IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP 1028
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
+S+QAQ NATLL NI LRSTLC++ M + +L+ EAFDWLLGEIES+F QAIA PGEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAA 3414
ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE+IN+SK KTPSLTVFL G +A
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148
Query: 3415 KDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTS 3594
+D E+AKD+LC+LEHTTL+KVT NTAIYYDP+P++TV+AED+EWV+++YEMPD D++R S
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARIS 1208
Query: 3595 PWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGE 3774
PWLLR+ELDRK M D+KLTME IA++I+ GFG+D++ I+ DDNAEKLV R+RI D+ +
Sbjct: 1209 PWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK 1268
Query: 3775 AQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
QEE+ VDKM+DDVFLRCIE+NML+D+TLQGI ISKVYM+ P TD+KK+IIIT +G F
Sbjct: 1269 MQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEF 1328
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
K++ +WILETDG +L+RVLSE+ +DPVRTTSNDI EIF VLGIEAVRKA+ERE+ +VISF
Sbjct: 1329 KALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISF 1388
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
DGSYVNYRHLALLCD MT +GHLMAITRHG+NRQ+ G LM+CSFEETVD+LMEAA H E
Sbjct: 1389 DGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGES 1448
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV--VMGGGFYGSFAGSPSN 4482
DP+KGVSENIMLGQLA GTGCFDL+LD EKCKYGMEIP N+ + G G F GS +
Sbjct: 1449 DPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPS 1508
Query: 4483 --REFSPAHSPWNSGVTPTYAGAAWSPTTG-GMSPG-AGFSPAGNTD-GGASPFNEGGWS 4647
SPA +PWN G TP Y AWSP+ G GM+PG AGFSP+ +D G SP WS
Sbjct: 1509 PMGGISPAMTPWNQGATPAY--GAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWS 1566
Query: 4648 --PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SPG P G SP PS GG YSP+SP +
Sbjct: 1567 PTPGSPGSP-GPSSPYIPSPGGAMSPSYSPTSPAY 1600
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1619 SPSYSPTSPSYSPTSPNYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1672
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1673 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1699
Score = 47.8 bits (112), Expect = 0.003
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT +SPT+ SP +SP + SP +S
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1665
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1666 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1692
Score = 46.6 bits (109), Expect = 0.007
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1735
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP Y+P+SP +
Sbjct: 1736 PTSP-----SYSPTSPNYSPTSPN-YTPTSPSY 1762
Score = 46.2 bits (108), Expect = 0.009
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT +SPT+ SP +SP + +SP ++
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPSSP----RYT 1812
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP +P +PSY SP YSP+SP++
Sbjct: 1813 PQSP-----TYTPSSPSYSPSSPS-YSPTSPKY 1839
Score = 45.8 bits (107), Expect = 0.012
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPNYSPTSPNYTPTSP----SYS 1763
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP YSP+SP +
Sbjct: 1764 PTSP-----SYSPTSPNYTPTSPN-YSPTSPSY 1790
Score = 45.1 bits (105), Expect = 0.020
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP +SP + TPT ++SPT+ SP ++P SP +S
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPT--SPSYSPTSPSYSPTSPNYTP-------TSP----NYS 1784
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSPSSP++
Sbjct: 1785 PTSP-----SYSPTSPSYSPTSPS-YSPSSPRY 1811
Score = 43.5 bits (101), Expect = 0.058
Identities = 33/93 (35%), Positives = 46/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT ++SP++ +P + +SP SP +S
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPT--SPSYSPSSPEYTPASPKYSPTSPKYSPTSP----KYS 1875
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP TP Y SP YSP+SP +
Sbjct: 1876 PTSP-----TYSPTTPKYSPTSP-TYSPTSPVY 1902
>gi|133327|sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest
subunit (RPB1)
Length = 1970
Score = 2222 bits (5759), Expect = 0.0
Identities = 1089/1595 (68%), Positives = 1311/1595 (81%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D PLR + RVQFG+L P+E+KRMSV +++PE E G+PKLGGLMDPRQGVI+R G
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH+ELAKPVFH+GFL KT+K+LRCVCF+C +LL+D + P++ +I
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQP 546
L K+ KKRLT +YDLCK K++CEG G GCGRYQP
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 547 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 726
RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ V+GM+P++ARPEWM
Sbjct: 190 RIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 727 ICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
I T GSA+NQDDLTHKL+DI+K N QL+RNE NGAAAHV+ +DV+
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQFHVAT+VDN +PGLP A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
DPNL ID VGVPR+IA N+TF EIVTPFN+D+LQELV RG++QYPGAK +NG R+D
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR+HP+ +DLHLQ GY+VERHM DGDI++FNRQPTLHKMSMMGHRV+ILPWSTFR+NLSV
Sbjct: 429 LRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 488
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
T+PYNADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR
Sbjct: 489 TTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKF 548
Query: 1615 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 1794
TKRDVF++ +M+LLM+L TWDGKVPQPAILKP+PLWTGKQ+FSLIIPG++N +RTHST
Sbjct: 549 TKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHST 608
Query: 1795 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 1974
HPD EDSGPYK ISPGDTKV++E+GEL+ GI+C K++G SAG+L+H+ LE+G++I F
Sbjct: 609 HPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLF 668
Query: 1975 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 2154
YS+IQTVIN WL+ EGHTIGIGD+IAD TY DIQNTI+KAKQDV++VIEKAHN++LEPT
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 2155 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACV 2334
PGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF INISQVIA V
Sbjct: 729 PGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 2335 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 2514
GQQNVEGKRIPFGF+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 2515 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 2694
DTAVKTAETGYIQRRLIK+MESVMV YD TVRNS+ Q+VQLRYGEDGL G VE QN+ T
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLAT 908
Query: 2695 MKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK 2874
+KP+N FE+ FR D T+ + LR+ ED+V+++ + + +E E+ ++ EDR +LR
Sbjct: 909 LKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV 968
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
IFP GD+K+VLPCNL R+IWNAQKIF ++ R P +L P+ V+ GV+ELSKKL+IV+G+D
Sbjct: 969 IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP 1028
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
+S+QAQ NATLL NI LRSTLC++ M + +L+ EAFDWLLGEIES+F QAIA PGEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAA 3414
ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE+IN+SK KTPSLTVFL G +A
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148
Query: 3415 KDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTS 3594
+D E+AKD+LC+LEHTTL+KVT NTAIYYDP+P++TV+AED+EWV+++YEMPD D++R S
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARIS 1208
Query: 3595 PWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGE 3774
PWLLR+ELDRK M D+KLTME IA++I+ GFG+D++ I+ DDNAEKLV R+RI D+ +
Sbjct: 1209 PWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK 1268
Query: 3775 AQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
QEE+ VDKM+DDVFLRCIE+NML+D+TLQGI ISKVYM+ P TD+KK+IIIT +G F
Sbjct: 1269 MQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEF 1328
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
K++ +WILETDG +L+RVLSE+ +DPVRTTSNDI EIF VLGIEAVRKA+ERE+ +VISF
Sbjct: 1329 KALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISF 1388
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
DGSYVNYRHLALLCD MT +GHLMAITRHG+NRQ+ G LM+CSFEETVD+LMEAA H E
Sbjct: 1389 DGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGES 1448
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV--VMGGGFYGSFAGSPSN 4482
DP+KGVSENIMLGQLA GTGCFDL+LD EKCKYGMEIP N+ + G G F GS +
Sbjct: 1449 DPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPS 1508
Query: 4483 --REFSPAHSPWNSGVTPTYAGAAWSPTTG-GMSPG-AGFSPAGNTD-GGASPFNEGGWS 4647
SPA +PWN G TP Y AWSP+ G GM+PG AGFSP+ +D G SP WS
Sbjct: 1509 PMGGISPAMTPWNQGATPAY--GAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWS 1566
Query: 4648 --PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SPG P G SP PS GG YSP+SP +
Sbjct: 1567 PTPGSPGSP-GPSSPYIPSPGGAMSPSYSPTSPAY 1600
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1619 SPSYSPTSPSYSPTSPNYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1672
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1673 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1699
Score = 47.8 bits (112), Expect = 0.003
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT +SPT+ SP +SP + SP +S
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1665
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1666 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1692
Score = 46.6 bits (109), Expect = 0.007
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1735
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP Y+P+SP +
Sbjct: 1736 PTSP-----SYSPTSPNYSPTSPN-YTPTSPSY 1762
Score = 46.2 bits (108), Expect = 0.009
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT +SPT+ SP +SP + +SP ++
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPSSP----RYT 1812
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP +P +PSY SP YSP+SP++
Sbjct: 1813 PQSP-----TYTPSSPSYSPSSPS-YSPTSPKY 1839
Score = 45.8 bits (107), Expect = 0.012
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPNYSPTSPNYTPTSP----SYS 1763
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP YSP+SP +
Sbjct: 1764 PTSP-----SYSPTSPNYTPTSPN-YSPTSPSY 1790
Score = 45.1 bits (105), Expect = 0.020
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP +SP + TPT ++SPT+ SP ++P SP +S
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPT--SPSYSPTSPSYSPTSPNYTP-------TSP----NYS 1784
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSPSSP++
Sbjct: 1785 PTSP-----SYSPTSPSYSPTSPS-YSPSSPRY 1811
Score = 43.5 bits (101), Expect = 0.058
Identities = 33/93 (35%), Positives = 46/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT ++SP++ +P + +SP SP +S
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPT--SPSYSPSSPEYTPASPKYSPTSPKYSPTSP----KYS 1875
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP TP Y SP YSP+SP +
Sbjct: 1876 PTSP-----TYSPTTPKYSPTSP-TYSPTSPVY 1902
>gi|4505939|ref|NP_000928.1| DNA directed RNA polymerase II
polypeptide A; polymerase (RNA) II (DNA directed)
polypeptide A (220kD); DNA-directed RNA polymerase II
largest subunit, RNA polymerase II 220 kd subunit [Homo
sapiens]
gi|133326|sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest
subunit (RPB1)
gi|105878|pir||S21054 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - human
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo
sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit
[Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit
[Cricetulus griseus]
Length = 1970
Score = 2222 bits (5759), Expect = 0.0
Identities = 1089/1595 (68%), Positives = 1311/1595 (81%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D PLR + RVQFG+L P+E+KRMSV +++PE E G+PKLGGLMDPRQGVI+R G
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH+ELAKPVFH+GFL KT+K+LRCVCF+C +LL+D + P++ +I
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQP 546
L K+ KKRLT +YDLCK K++CEG G GCGRYQP
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 547 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 726
RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ V+GM+P++ARPEWM
Sbjct: 190 RIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 727 ICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
I T GSA+NQDDLTHKL+DI+K N QL+RNE NGAAAHV+ +DV+
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQFHVAT+VDN +PGLP A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
DPNL ID VGVPR+IA N+TF EIVTPFN+D+LQELV RG++QYPGAK +NG R+D
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR+HP+ +DLHLQ GY+VERHM DGDI++FNRQPTLHKMSMMGHRV+ILPWSTFR+NLSV
Sbjct: 429 LRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 488
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
T+PYNADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR
Sbjct: 489 TTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKF 548
Query: 1615 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 1794
TKRDVF++ +M+LLM+L TWDGKVPQPAILKP+PLWTGKQ+FSLIIPG++N +RTHST
Sbjct: 549 TKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHST 608
Query: 1795 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 1974
HPD EDSGPYK ISPGDTKV++E+GEL+ GI+C K++G SAG+L+H+ LE+G++I F
Sbjct: 609 HPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLF 668
Query: 1975 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 2154
YS+IQTVIN WL+ EGHTIGIGD+IAD TY DIQNTI+KAKQDV++VIEKAHN++LEPT
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 2155 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACV 2334
PGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF INISQVIA V
Sbjct: 729 PGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 2335 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 2514
GQQNVEGKRIPFGF+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 2515 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 2694
DTAVKTAETGYIQRRLIK+MESVMV YD TVRNS+ Q+VQLRYGEDGL G VE QN+ T
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLAT 908
Query: 2695 MKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK 2874
+KP+N FE+ FR D T+ + LR+ ED+V+++ + + +E E+ ++ EDR +LR
Sbjct: 909 LKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV 968
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
IFP GD+K+VLPCNL R+IWNAQKIF ++ R P +L P+ V+ GV+ELSKKL+IV+G+D
Sbjct: 969 IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP 1028
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
+S+QAQ NATLL NI LRSTLC++ M + +L+ EAFDWLLGEIES+F QAIA PGEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAA 3414
ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE+IN+SK KTPSLTVFL G +A
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148
Query: 3415 KDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTS 3594
+D E+AKD+LC+LEHTTL+KVT NTAIYYDP+P++TV+AED+EWV+++YEMPD D++R S
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARIS 1208
Query: 3595 PWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGE 3774
PWLLR+ELDRK M D+KLTME IA++I+ GFG+D++ I+ DDNAEKLV R+RI D+ +
Sbjct: 1209 PWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK 1268
Query: 3775 AQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
QEE+ VDKM+DDVFLRCIE+NML+D+TLQGI ISKVYM+ P TD+KK+IIIT +G F
Sbjct: 1269 MQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEF 1328
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
K++ +WILETDG +L+RVLSE+ +DPVRTTSNDI EIF VLGIEAVRKA+ERE+ +VISF
Sbjct: 1329 KALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISF 1388
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
DGSYVNYRHLALLCD MT +GHLMAITRHG+NRQ+ G LM+CSFEETVD+LMEAA H E
Sbjct: 1389 DGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGES 1448
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV--VMGGGFYGSFAGSPSN 4482
DP+KGVSENIMLGQLA GTGCFDL+LD EKCKYGMEIP N+ + G G F GS +
Sbjct: 1449 DPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPS 1508
Query: 4483 --REFSPAHSPWNSGVTPTYAGAAWSPTTG-GMSPG-AGFSPAGNTD-GGASPFNEGGWS 4647
SPA +PWN G TP Y AWSP+ G GM+PG AGFSP+ +D G SP WS
Sbjct: 1509 PMGGISPAMTPWNQGATPAY--GAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWS 1566
Query: 4648 --PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SPG P G SP PS GG YSP+SP +
Sbjct: 1567 PTPGSPGSP-GPSSPYIPSPGGAMSPSYSPTSPAY 1600
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1619 SPSYSPTSPSYSPTSPNYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1672
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1673 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1699
Score = 47.8 bits (112), Expect = 0.003
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT +SPT+ SP +SP + SP +S
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1665
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1666 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1692
Score = 46.6 bits (109), Expect = 0.007
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1735
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP Y+P+SP +
Sbjct: 1736 PTSP-----SYSPTSPNYSPTSPN-YTPTSPSY 1762
Score = 46.2 bits (108), Expect = 0.009
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT +SPT+ SP +SP + +SP ++
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPSSP----RYT 1812
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP +P +PSY SP YSP+SP++
Sbjct: 1813 PQSP-----TYTPSSPSYSPSSPS-YSPTSPKY 1839
Score = 45.8 bits (107), Expect = 0.012
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPNYSPTSPNYTPTSP----SYS 1763
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP YSP+SP +
Sbjct: 1764 PTSP-----SYSPTSPNYTPTSPN-YSPTSPSY 1790
Score = 45.1 bits (105), Expect = 0.020
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP +SP + TPT ++SPT+ SP ++P SP +S
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPT--SPSYSPTSPSYSPTSPNYTP-------TSP----NYS 1784
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSPSSP++
Sbjct: 1785 PTSP-----SYSPTSPSYSPTSPS-YSPSSPRY 1811
Score = 42.7 bits (99), Expect = 0.099
Identities = 33/93 (35%), Positives = 45/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT ++SP++ +P +SP SP +S
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPT--SPSYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYS 1875
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP TP Y SP YSP+SP +
Sbjct: 1876 PTSP-----TYSPTTPKYSPTSP-TYSPTSPVY 1902
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit
[Cricetulus griseus]
Length = 1970
Score = 2219 bits (5751), Expect = 0.0
Identities = 1088/1595 (68%), Positives = 1310/1595 (81%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D PLR + RVQFG+L P+E+KRMSV +++PE E G+PKLGGLMDPRQGVI+R G
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH+ELAKPVFH+GFL KT+K+LRCVCF+C +LL+D + P++ +I
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQP 546
L K+ KKRLT +YDLCK K++CEG G GCGRYQP
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 547 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 726
RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ V+GM+P++ARPEWM
Sbjct: 190 RIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 727 ICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
I T GSA+NQDDLTHKL+DI+K N QL+RNE NGAAAHV+ +DV+
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQFHVAT+VDN +PGLP A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
DPNL ID VGVPR+IA N+TF EIVTPFN+D+LQELV RG++QYPGAK +NG R+D
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR+HP+ +DLHLQ GY+VERHM DGDI++FNRQPTLHKMSMMGHRV+ILPWSTFR+NLSV
Sbjct: 429 LRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 488
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
T+PYNADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR
Sbjct: 489 TTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKF 548
Query: 1615 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 1794
TKRDVF++ +M+LLM+L TWDGKVPQPAILKP+PLWTGKQ+FSLIIPG++N +RTHST
Sbjct: 549 TKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHST 608
Query: 1795 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 1974
HPD EDSGPYK ISPGDTKV++E+GEL+ GI+C K++G SAG+L+H+ LE+G++I F
Sbjct: 609 HPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLF 668
Query: 1975 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 2154
YS+IQTVIN WL+ EGHTIGIGD+IAD TY DIQNTI+KAKQDV++VIEKAHN++LEPT
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 2155 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACV 2334
PGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF INISQVIA V
Sbjct: 729 PGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 2335 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 2514
GQQNVEGKRIPFGF+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 2515 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 2694
DTAVKTAETGYIQRRLIK+MESVMV YD TVRNS+ Q+VQLRYGEDGL G VE QN+ T
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLAT 908
Query: 2695 MKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK 2874
+KP+N FE+ FR D T+ + LR+ ED+V+++ + + +E E+ ++ EDR +LR
Sbjct: 909 LKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV 968
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
IFP GD+K+VLPCNL R+IWNAQKIF ++ R P +L + V+ GV+ELSKKL+IV+G+D
Sbjct: 969 IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHSIKVVEGVKELSKKLVIVNGDDP 1028
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
+S+QAQ NATLL NI LRSTLC++ M + +L+ EAFDWLLGEIES+F QAIA PGEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAA 3414
ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE+IN+SK KTPSLTVFL G +A
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148
Query: 3415 KDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTS 3594
+D E+AKD+LC+LEHTTL+KVT NTAIYYDP+P++TV+AED+EWV+++YEMPD D++R S
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARIS 1208
Query: 3595 PWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGE 3774
PWLLR+ELDRK M D+KLTME IA++I+ GFG+D++ I+ DDNAEKLV R+RI D+ +
Sbjct: 1209 PWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK 1268
Query: 3775 AQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
QEE+ VDKM+DDVFLRCIE+NML+D+TLQGI ISKVYM+ P TD+KK+IIIT +G F
Sbjct: 1269 MQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEF 1328
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
K++ +WILETDG +L+RVLSE+ +DPVRTTSNDI EIF VLGIEAVRKA+ERE+ +VISF
Sbjct: 1329 KALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISF 1388
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
DGSYVNYRHLALLCD MT +GHLMAITRHG+NRQ+ G LM+CSFEETVD+LMEAA H E
Sbjct: 1389 DGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGES 1448
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV--VMGGGFYGSFAGSPSN 4482
DP+KGVSENIMLGQLA GTGCFDL+LD EKCKYGMEIP N+ + G G F GS +
Sbjct: 1449 DPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPS 1508
Query: 4483 --REFSPAHSPWNSGVTPTYAGAAWSPTTG-GMSPG-AGFSPAGNTD-GGASPFNEGGWS 4647
SPA +PWN G TP Y AWSP+ G GM+PG AGFSP+ +D G SP WS
Sbjct: 1509 PMGGISPAMTPWNQGATPAY--GAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWS 1566
Query: 4648 --PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SPG P G SP PS GG YSP+SP +
Sbjct: 1567 PTPGSPGSP-GPSSPYIPSPGGAMSPSYSPTSPAY 1600
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1619 SPSYSPTSPSYSPTSPNYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1672
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1673 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1699
Score = 47.8 bits (112), Expect = 0.003
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT +SPT+ SP +SP + SP +S
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1665
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1666 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1692
Score = 46.6 bits (109), Expect = 0.007
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1735
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP Y+P+SP +
Sbjct: 1736 PTSP-----SYSPTSPNYSPTSPN-YTPTSPSY 1762
Score = 46.2 bits (108), Expect = 0.009
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT +SPT+ SP +SP + +SP ++
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPSSP----RYT 1812
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP +P +PSY SP YSP+SP++
Sbjct: 1813 PQSP-----TYTPSSPSYSPSSPS-YSPTSPKY 1839
Score = 45.8 bits (107), Expect = 0.012
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPNYSPTSPNYTPTSP----SYS 1763
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP YSP+SP +
Sbjct: 1764 PTSP-----SYSPTSPNYTPTSPN-YSPTSPSY 1790
Score = 45.1 bits (105), Expect = 0.020
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP +SP + TPT ++SPT+ SP ++P SP +S
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPT--SPSYSPTSPSYSPTSPNYTP-------TSP----NYS 1784
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSPSSP++
Sbjct: 1785 PTSP-----SYSPTSPSYSPTSPS-YSPSSPRY 1811
Score = 42.7 bits (99), Expect = 0.099
Identities = 33/93 (35%), Positives = 45/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT ++SP++ +P +SP SP +S
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPT--SPSYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYS 1875
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP TP Y SP YSP+SP +
Sbjct: 1876 PTSP-----TYSPTTPKYSPTSP-TYSPTSPVY 1902
>gi|7434727|pir||I38186 RNA polymerase II largest subunit - human
gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo
sapiens]
Length = 1970
Score = 2214 bits (5737), Expect = 0.0
Identities = 1087/1595 (68%), Positives = 1309/1595 (81%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D PLR + RVQFG+L P+E+KRMSV +++PE E G+PKLGGLMDPRQGVI+R G
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH+ELAKPVFH+GFL KT+K+LRCVCF+C +LL+D + P++ +I
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQP 546
L K+ KKRLT +YDLCK K++CEG G GCGRYQP
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 547 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 726
RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ V+GM+P++ARPEWM
Sbjct: 190 RIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 727 ICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
I T GSA+NQDDLTHKL+DI+K N QL+RNE NGAAAHV+ +DV+
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQFHVAT+VDN +PGLP A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
DPNL ID VGVPR+IA N+TF EIVTPFN+D+LQELV RG++QYPGAK +NG R+D
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR+HP+ +DLHLQ GY+VERHM DGDI++FNRQPTLHKMSMMGHRV+ILPWSTFR+NLSV
Sbjct: 429 LRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 488
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
T+PYNADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR
Sbjct: 489 TTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKF 548
Query: 1615 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 1794
TKRDVF++ +M+LLM+L TWDGKVPQPAILKP+PLWTGKQ+FSLIIPG++N +RTHST
Sbjct: 549 TKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHST 608
Query: 1795 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 1974
HPD EDSGPYK ISPGDTKV++E+GEL+ GI+C K++G SAG+L+H+ LE+G++I F
Sbjct: 609 HPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLF 668
Query: 1975 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 2154
YS+IQTVIN WL+ EGHTIGIGD+IAD TY DIQNTI+KAKQDV++VIEKAHN++LEPT
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 2155 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACV 2334
PGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF INISQVIA V
Sbjct: 729 PGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 2335 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 2514
GQQNVEGKRIPFGF+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 2515 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 2694
DTAVKTAETGYIQRRLIK+MESVMV YD TVRNS+ Q+VQLRYGEDGL G VE QN+ T
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLAT 908
Query: 2695 MKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK 2874
+KP+N FE+ FR D T+ + LR+ ED+V+++ + + +E E+ ++ EDR +LR
Sbjct: 909 LKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV 968
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
IFP GD+K+VLPCNL R+IWNAQKIF ++ R P +L P+ V+ GV+ELSKKL+IV+G+D
Sbjct: 969 IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP 1028
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
+S+QAQ NATLL NI LRSTLC++ M + +L+ EAFD LLGEIES+F QAIA PGEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDLLLGEIESKFNQAIAHPGEMVG 1088
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAA 3414
ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE+IN+SK KTPSLTVFL G +A
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148
Query: 3415 KDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTS 3594
+D E+AKD+LC+LEHTTL+KVT NTAIYYDP+P++TV+AED+EWV+++YEMPD D++R S
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARIS 1208
Query: 3595 PWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGE 3774
PWLLR+ELDRK M D+KLTME IA++I+ GFG+D++ I+ DDNAEKLV R+RI D+ +
Sbjct: 1209 PWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK 1268
Query: 3775 AQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
QEE+ VDKM+DDVFLRCIE+NML+D+TLQGI ISKVYM+ P TD+KK+IIIT +G F
Sbjct: 1269 MQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEF 1328
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
K++ +WILETDG +L+RVLSE+ +DPVRTTSNDI EIF VLGIEAVRKA+ERE+ +VISF
Sbjct: 1329 KALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISF 1388
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
DGSYVNYRHLALLCD MT +GHLMAITRHG+NRQ+ G LM+CSFEETVD+LMEAA H E
Sbjct: 1389 DGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGES 1448
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV--VMGGGFYGSFAGSPSN 4482
P+KGVSENIMLGQLA GTGCFDL+LD EKCKYGMEIP N+ + G G F GS +
Sbjct: 1449 YPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPS 1508
Query: 4483 --REFSPAHSPWNSGVTPTYAGAAWSPTTG-GMSPG-AGFSPAGNTD-GGASPFNEGGWS 4647
SPA +PWN G TP Y AWSP+ G GM+PG AGFSP+ +D G SP WS
Sbjct: 1509 PMGGISPAMTPWNQGATPAY--GAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWS 1566
Query: 4648 --PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SPG P G SP PS GG YSP+SP +
Sbjct: 1567 PTPGSPGSP-GPSSPYIPSPGGAMSPSYSPTSPAY 1600
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1619 SPSYSPTSPSYSPTSPNYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1672
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1673 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1699
Score = 47.8 bits (112), Expect = 0.003
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT +SPT+ SP +SP + SP +S
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1665
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1666 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1692
Score = 46.6 bits (109), Expect = 0.007
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1735
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP Y+P+SP +
Sbjct: 1736 PTSP-----SYSPTSPNYSPTSPN-YTPTSPSY 1762
Score = 46.2 bits (108), Expect = 0.009
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT +SPT+ SP +SP + +SP ++
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPSSP----RYT 1812
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP +P +PSY SP YSP+SP++
Sbjct: 1813 PQSP-----TYTPSSPSYSPSSPS-YSPTSPKY 1839
Score = 45.8 bits (107), Expect = 0.012
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPNYSPTSPNYTPTSP----SYS 1763
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP YSP+SP +
Sbjct: 1764 PTSP-----SYSPTSPNYTPTSPN-YSPTSPSY 1790
Score = 45.1 bits (105), Expect = 0.020
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP +SP + TPT ++SPT+ SP ++P SP +S
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPT--SPSYSPTSPSYSPTSPNYTP-------TSP----NYS 1784
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSPSSP++
Sbjct: 1785 PTSP-----SYSPTSPSYSPTSPS-YSPSSPRY 1811
Score = 42.7 bits (99), Expect = 0.099
Identities = 33/93 (35%), Positives = 45/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT ++SP++ +P +SP SP +S
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPT--SPSYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYS 1875
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP TP Y SP YSP+SP +
Sbjct: 1876 PTSP-----TYSPTTPKYSPTSP-TYSPTSPVY 1902
>gi|31226322|ref|XP_317690.1| ENSANGP00000010305 [Anopheles gambiae]
gi|21300163|gb|EAA12308.1| ENSANGP00000010305 [Anopheles gambiae str.
PEST]
Length = 1877
Score = 2212 bits (5733), Expect = 0.0
Identities = 1078/1587 (67%), Positives = 1297/1587 (80%), Gaps = 13/1587 (0%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRGRC 198
+APLR+V RVQFGIL P+EI+RMSV +++ E E G+PKL GLMDPRQGVI+R RC
Sbjct: 6 KAPLRLVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRC 65
Query: 199 MTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILK 378
TCAGN+T+CPGHFGH++LAKPVFHIGF+TKT+KILRCVCFYC ++L+ P++ EI+
Sbjct: 66 QTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPKIKEIVL 125
Query: 379 KTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
K+ +KRL +YDLCK K +CEG GGCG YQPS RR
Sbjct: 126 KSKGQPRKRLAYVYDLCKGKKICEGGEDMDMSKEPTADGAKKQGH---GGCGHYQPSIRR 182
Query: 559 VGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
G+D+ AEWK +VN++ QE+KI ++AERV E+ + ITDE+ V+GMDP+FARP+WMI T
Sbjct: 183 TGLDLMAEWK-DVNDENQEKKIQVSAERVYEILKHITDEECFVLGMDPKFARPDWMIITV 241
Query: 739 XXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQF 918
FG+ KNQDDLTHKLSDIIK N +L++NEA GAAAHV+ +++++LQF
Sbjct: 242 LPVPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEATGAAAHVIAENIKMLQF 301
Query: 919 HVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPN 1098
HVATLVDN +PG+P A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT DPN
Sbjct: 302 HVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 361
Query: 1099 LPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYH 1266
L ID VGVPR++AQN+TFPE+VTPFN+D++QELV RG++QYPGAK +NG R+DLR+H
Sbjct: 362 LRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFH 421
Query: 1267 PRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPY 1446
P+++DLHLQ GY+VERH++D D+++FNRQPTLHKMSMMGHRVK+LPWSTFRMNLS TSPY
Sbjct: 422 PKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPY 481
Query: 1447 NADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRD 1626
NADFDGDEMNLH+PQS+ETRAEIE I + PRQ+ITPQANKPVMGIVQDTL AVR MTKRD
Sbjct: 482 NADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRD 541
Query: 1627 VFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDS 1806
VFI+ MM+LLM+LPTWDGK+PQPAILKPKPLWTGKQ+F+LIIPGNVN++RTHSTHPD
Sbjct: 542 VFIEKEQMMNLLMFLPTWDGKMPQPAILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHPDE 601
Query: 1807 EDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHI 1986
ED GPYKWISPGDTKV++EHG+L+ GI+C KT+G SAG+LLH+V LELG+EIA FY +I
Sbjct: 602 EDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNI 661
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
QTV+N WL+ EGH+IGIGDTIAD TY +IQ I+KAK+DV+ VI+KAHN +LEPTPGNT
Sbjct: 662 QTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIKKAKEDVIGVIQKAHNMELEPTPGNT 721
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
LRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN INISQVIACVGQQN
Sbjct: 722 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 781
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
VEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EF+FHAMGGREGLIDTAV
Sbjct: 782 VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAV 841
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPN 2706
KTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G VE QN+PT+K +
Sbjct: 842 KTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLS 901
Query: 2707 NAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPR 2886
N VFE+ +R D T+ + LR+ ++EDV++E+ E+ I +E+E+ QL DR LR+IFP
Sbjct: 902 NKVFEKRYRFDPTNERTLRRIFNEDVIKELTETSSVIQEIEAEYEQLLRDREALRQIFPN 961
Query: 2887 GDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQ 3066
GD+K+VLPCNLQR+IWN QKIF ++ R P +LSPL VI GVR+L ++ +IV+G D +SKQ
Sbjct: 962 GDSKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTDRLSKQ 1021
Query: 3067 AQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAA 3246
A NATLL L+RSTLCTK + + +LN+EAF+WL+GEIE+RFQQA PGEMVGALAA
Sbjct: 1022 ANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAA 1081
Query: 3247 QSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPE 3426
QSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG AA+D E
Sbjct: 1082 QSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAE 1141
Query: 3427 KAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLL 3606
KAK+VLC+LEHTTL+KVT NTAIYYDPDP+ TVIAED+E+V+++YEMPD D +R SPWLL
Sbjct: 1142 KAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLL 1201
Query: 3607 RIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK--GEAQ 3780
RIELDRKRM DKKLTME IA++I+ GFG+D++ I+ DDNA+KLV R+RI ED E +
Sbjct: 1202 RIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNEDNKFQENE 1261
Query: 3781 EEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVA 3960
EE +DKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRI+ITPEG FK +
Sbjct: 1262 EENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITPEGEFKPIG 1321
Query: 3961 DWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSY 4140
+W+LETDGT++++VLSER +DPVRT SNDICEIF VLGIEAVRK++E+EM+NV+ F G Y
Sbjct: 1322 EWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNNVLQFYGLY 1381
Query: 4141 VNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVK 4320
VNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+L +AA HAE DP++
Sbjct: 1382 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLNDAAAHAEVDPMR 1441
Query: 4321 GVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPA 4500
GVSENI+LGQL R GTGCFDL+LD EKCK GMEIP ++GG G F GS + +P+
Sbjct: 1442 GVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSILGG--TGMFFGSAA----TPS 1495
Query: 4501 HSPWNSGVTPTYAGAAWSPT--TGGMSPGA-GFSPAGNTDGGASPFNEGGWSP--ASPGD 4665
+PW TP Y G WSP+ GM+PG FSP+ +D AS + WSP SP
Sbjct: 1496 MTPWQQSATPGYGG--WSPSGPASGMTPGGPSFSPSAQSD--ASGMSPSSWSPIRGSPSS 1551
Query: 4666 PLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P ++SP PS MSP YSPSSP +
Sbjct: 1552 PGPSMSPYPPSSPSMSPS-YSPSSPNY 1577
Score = 47.0 bits (110), Expect = 0.005
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ +P +SP+ SP +S
Sbjct: 1675 SPSYSPSSPSYSPTSPSYSPT--SPSYSPTSPNFTPVTPSYSPSSPNYSPTSPH----YS 1728
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
PASP + SP +P Y SP YSP+SP +
Sbjct: 1729 PASP-----SYSPSSPKYSPTSPS-YSPTSPSY 1755
Score = 42.7 bits (99), Expect = 0.099
Identities = 31/95 (32%), Positives = 41/95 (42%), Gaps = 3/95 (3%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPG-AGFSPAGNTDGGASPFNEGGWS 4647
SPS SP HSP +S + +++S T SP + +SP+ SP
Sbjct: 1779 SPSYSPSSPQHSPGSSSNHYSIGSSSYSQTPAPYSPNMSSYSPSSPKYSPTSPVYTSSSP 1838
Query: 4648 PASPGDPLGALSPRTPSYGGMSPG--VYSPSSPQF 4746
SP P A SP Y SP YSP+SP +
Sbjct: 1839 TYSPSSP--AYSPTPQGYSPSSPASPTYSPTSPSY 1871
Score = 38.1 bits (87), Expect = 2.4
Identities = 38/124 (30%), Positives = 51/124 (40%), Gaps = 32/124 (25%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPT---YAGA----------------------AWSPTTGGMS 4575
SPS SP +SP + +PT Y G+ ++SP++ S
Sbjct: 1731 SPSYSPSSPKYSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNYSPTSPSYSPSSPQHS 1790
Query: 4576 PGA-------GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPS 4734
PG+ G S T SP N +SP+SP SP +P Y SP YSPS
Sbjct: 1791 PGSSSNHYSIGSSSYSQTPAPYSP-NMSSYSPSSP-----KYSPTSPVYTSSSP-TYSPS 1843
Query: 4735 SPQF 4746
SP +
Sbjct: 1844 SPAY 1847
>gi|6677795|ref|NP_033115.1| polymerase (RNA) II (DNA directed)
polypeptide A; RNA polymerase II 1 [Mus musculus]
gi|90464|pir||A28490 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - mouse
gi|200794|gb|AAA40071.1| RNA polymerase II
Length = 1932
Score = 2201 bits (5702), Expect = 0.0
Identities = 1078/1598 (67%), Positives = 1304/1598 (81%), Gaps = 22/1598 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D PLR + RVQFG+L P+E+KRMSV +++PE E G+PKLGGLMDPRQGVI+R G
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH+ELAKPVFH+GFL KT+K+LRCVCF+C +LL+D + P++ +I
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQP 546
L K+ KKRLT +YDLCK K++CEG G GCGRYQP
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 547 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 726
RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ V+GM+P++ARPEWM
Sbjct: 190 RIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 727 ICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
I T GSA+NQDDLTHKL+DI+K N QL+RNE NGAAAHV+ +DV+
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQFHVAT+VDN +PGLP A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
DPNL ID VGVPR+IA N+TF EIVTPFN+D+LQELV RG++QYPGAK +NG R+D
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR+HP+ +DLHLQ GY+VERHM DGDI++FNRQPTLHKMSMMGHRV+ILPWSTFR+NLSV
Sbjct: 429 LRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 488
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
T+PYNADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR
Sbjct: 489 TTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKF 548
Query: 1615 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 1794
TKRDVF++ +M+LLM+L TWDGKVPQPAILKP+PLWTGKQ+FSLIIPG++N +RTHST
Sbjct: 549 TKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHST 608
Query: 1795 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 1974
HPD EDSGPYK ISPGDTKV++E+GEL+ GI+C K++G SAG+L+H+ LE+G++I F
Sbjct: 609 HPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLF 668
Query: 1975 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 2154
YS+IQTVIN WL+ EGHTIGIGD+IAD TY DIQNTI+KAKQDV++VIEKAHN++LEPT
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 2155 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACV 2334
PGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF INISQVIA V
Sbjct: 729 PGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 2335 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 2514
GQQNVEGKRIPFGF+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 2515 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 2694
DTAVKTAETGYIQRRLIK+MESVMV YD TVRNS+ Q+VQLRYGEDGL G VE QN+ T
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLAT 908
Query: 2695 MKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK 2874
+KP+N FE+ FR D T+ + LR+ ED+V+++ + + +E E+ ++ EDR +LR
Sbjct: 909 LKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV 968
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
IFP GD+K+VLPCNL R+IWNAQKIF ++ R P +L P+ V+ GV+ELSKKL+IV+G+D
Sbjct: 969 IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP 1028
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
+S+QAQ NATLL NI LRSTLC++ M + +L+ EAFDWLLGEIES+F QAIA PGEMVG
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAA 3414
ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE+IN+SK KTPSLTVFL G +A
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1148
Query: 3415 KDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTS 3594
+D E+AKD+LC+LEHTTL+KVT NTAIYYDP+P++TV+AED+EWV+++YEMPD D++R S
Sbjct: 1149 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARIS 1208
Query: 3595 PWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGE 3774
PWLLR+ELDRK M D+KLTME IA++I+ GFG+D++ I+ DDNAEKLV R+RI D+ +
Sbjct: 1209 PWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK 1268
Query: 3775 AQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
QEE+ VDKM+DDVFLRCIE+NML+D+TLQGI ISKVYM+ P TD+KK+IIIT +G F
Sbjct: 1269 MQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEF 1328
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
K++ +WILETDG +L+RVLSE+ +DPVRTTSNDI EIF VLGIEAVRKA+ERE+ +VISF
Sbjct: 1329 KALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISF 1388
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
DGSYVNYRHLALLCD MT +GHLMAITRHG+NRQ+ G LM+CSFEETVD+LMEAA H E
Sbjct: 1389 DGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGES 1448
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNRE 4488
DP+KGVSENIMLGQLA GTGCFDL+LD EKCKYGMEIP N + G G G +P
Sbjct: 1449 DPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTN-IPGLGAAGRSGMTPGAAG 1507
Query: 4489 FSPAHSPWNSGVTPTYAGAAWSPTTGG-----------MSPGAGFSPA-GNTDGGASPFN 4632
FSP+ + SG +P Y+ AWSPT G SPG SP+ T P +
Sbjct: 1508 FSPSAASDASGFSPGYS-PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRS 1566
Query: 4633 EGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
GG++P SP + SP +PSY SP YSP+SP +
Sbjct: 1567 PGGYTPQSP-----SYSPTSPSYSPTSPS-YSPTSPNY 1598
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1602 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1655
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1656 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1682
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1581 SPSYSPTSPSYSPTSPNYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1634
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1635 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1661
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1662
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1663 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1689
Score = 47.4 bits (111), Expect = 0.004
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1658 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----NYS 1711
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP +P +PSY SP YSP+SP +
Sbjct: 1712 PTSPN-----YTPTSPSYSPTSPS-YSPTSPNY 1738
Score = 46.6 bits (109), Expect = 0.007
Identities = 34/96 (35%), Positives = 48/96 (49%), Gaps = 4/96 (4%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPF---NEG 4638
SPS SP++SP + +PT +SPT+ +P +SP + SP
Sbjct: 1686 SPSYSPTSPSYSPTSPSYSPT--SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP 1743
Query: 4639 GWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP SP + SP +PSY SP YSPSSP++
Sbjct: 1744 NYSPTSP-----SYSPTSPSYSPTSPS-YSPSSPRY 1773
Score = 46.2 bits (108), Expect = 0.009
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT +SPT+ SP +SP + +SP ++
Sbjct: 1721 SPSYSPTSPSYSPTSPNYTPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPSSP----RYT 1774
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP +P +PSY SP YSP+SP++
Sbjct: 1775 PQSP-----TYTPSSPSYSPSSPS-YSPTSPKY 1801
Score = 43.5 bits (101), Expect = 0.058
Identities = 33/93 (35%), Positives = 46/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT ++SP++ +P + +SP SP +S
Sbjct: 1784 SPSYSPSSPSYSPTSPKYTPT--SPSYSPSSPEYTPASPKYSPTSPKYSPTSP----KYS 1837
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP TP Y SP YSP+SP +
Sbjct: 1838 PTSP-----TYSPTTPKYSPTSP-TYSPTSPVY 1864
>gi|34871645|ref|XP_343923.1| similar to DNA-directed RNA polymerase
II largest subunit (RPB1) [Rattus norvegicus]
Length = 1783
Score = 2192 bits (5680), Expect = 0.0
Identities = 1080/1595 (67%), Positives = 1301/1595 (80%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D PLR + RVQFG+L P+E+KRMSV +++PE E G+PKLGGLMDPRQGVI+R G
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH+ELAKPVFH+GFL KT+K+LRCVCF+C +LL+D + P++ +I
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQP 546
L K+ KKRLT +YDLCK K++CEG G GCGRYQP
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 547 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 726
RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ V+GM+P++ARPEWM
Sbjct: 190 RIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 727 ICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
I T GSA+NQDDLTHKL+DI+K N QL+RNE NGAAAHV+ +DV+
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQFHVAT+VDN +PGLP A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
DPNL ID VGVPR+IA N+TF EIVTPFN+D+LQELV RG++QYPGAK +NG R+D
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR ++ G VERHM DGDI++FNRQPTLHKMSMMGHRV+ILPWSTFR+NLSV
Sbjct: 429 LR---------VRAGLIVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 479
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
T+PYNADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR
Sbjct: 480 TTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKF 539
Query: 1615 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 1794
TKRDVF++ +M+LLM+L TWDGKVPQPAILKP+PLWTGKQ+FSLIIPG++N +RTHST
Sbjct: 540 TKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHST 599
Query: 1795 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 1974
HPD EDSGPYK ISPGDTKV++E+GEL+ GI+C K++G SAG+L+H+ LE+G+++ F
Sbjct: 600 HPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLF 659
Query: 1975 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 2154
YS+IQTVIN WL+ EGHTIGIGD+IAD TY DIQNTI+KAKQDV++VIEKAHN++LEPT
Sbjct: 660 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 719
Query: 2155 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACV 2334
PGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF INISQVIA V
Sbjct: 720 PGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVV 779
Query: 2335 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 2514
GQQNVEGKRIPFGF+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLI
Sbjct: 780 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 839
Query: 2515 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 2694
DTAVKTAETGYIQRRLIK+MESVMV YD TVRNS+ Q+VQLRYGEDGL G VE QN+ T
Sbjct: 840 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLAT 899
Query: 2695 MKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK 2874
+KP+N FE+ FR D T+ + LR+ ED+V+++ + + +E E+ ++ EDR +LR
Sbjct: 900 LKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV 959
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
IFP GD+K+VLPCNL R+IWNAQKIF ++ R P +L P+ V+ GV+ELSKKL+IV+G+D
Sbjct: 960 IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP 1019
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
+S+QAQ NATLL NI LRSTLC++ M + +L+ EAFDWLLGEIES+F QAIA PGEMVG
Sbjct: 1020 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1079
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAA 3414
ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE+IN+SK KTPSLTVFL G +A
Sbjct: 1080 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSA 1139
Query: 3415 KDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTS 3594
+D E+AKD+LC+LEHTTL+KVT NTAIYYDP+P++TV+AED+EWV+++YEMPD D++R S
Sbjct: 1140 RDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARIS 1199
Query: 3595 PWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGE 3774
PWLLR+ELDRK M D+KLTME IA++I+ GFG+D++ I+ DDNAEKLV R+RI D+ +
Sbjct: 1200 PWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK 1259
Query: 3775 AQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
QEE+ VDKM+DDVFLRCIE+NML+D+TLQGI ISKVYM+ P TD+KK+IIIT +G F
Sbjct: 1260 MQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEF 1319
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
K++ +WILETDG +L+RVLSE+ +DPVRTTSNDI EIF VLGIEAVRKA+ERE+ +VISF
Sbjct: 1320 KALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISF 1379
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
DGSYVNYRHLALLCD MT +GHLMAITRHG+NRQ+ G LM+CSFEETVD+LMEAA H E
Sbjct: 1380 DGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGES 1439
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV--VMGGGFYGSFAGSPSN 4482
DP+KGVSENIMLGQLA GTGCFDL+LD EKCKYGMEIP N+ + G G F GS +
Sbjct: 1440 DPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPS 1499
Query: 4483 --REFSPAHSPWNSGVTPTYAGAAWSPTTG-GMSPG-AGFSPAGNTD-GGASPFNEGGWS 4647
SPA +PWN G TP Y AWSP+ G GM+PG AGFSP+ +D G SP WS
Sbjct: 1500 PMGGISPAMTPWNQGATPAY--GAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWS 1557
Query: 4648 --PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SPG P G SP PS GG YSP+SP +
Sbjct: 1558 PTPGSPGSP-GPSSPYIPSPGGAMSPSYSPTSPAY 1591
Score = 42.7 bits (99), Expect = 0.099
Identities = 33/93 (35%), Positives = 45/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + TPT ++SP++ +P +SP SP +S
Sbjct: 1635 SPSYSPSSPSYSPTSPKYTPT--SPSYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYS 1688
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP TP Y SP YSP+SP +
Sbjct: 1689 PTSP-----TYSPTTPKYSPTSP-TYSPTSPVY 1715
Score = 41.2 bits (95), Expect = 0.29
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SP++ +SP +SP + TP ++P++ SP + +SP SP +S
Sbjct: 1607 SPTSPSYSPTYSPSSPRYTP--QSPTYTPSSPSYSPSSPSYSPTSPKYTPTSP----SYS 1660
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P+SP +P +P Y SP YSP+SP++
Sbjct: 1661 PSSP-----EYTPTSPKYSPTSP-KYSPTSPKY 1687
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II
complex [Drosophila madeirensis]
Length = 1889
Score = 2179 bits (5647), Expect = 0.0
Identities = 1068/1595 (66%), Positives = 1298/1595 (80%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D +APLR V RVQFGIL P+EI+RMSV V+F E E G+PKLGGLMDPRQGVIDR
Sbjct: 6 DSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTS 65
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH++LAKPVFHIGF+TKT+KILRCVCFYC ++L+ P++ EI
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEI 125
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSY 552
+ K+ +KRL +YDLCK K++CEG GGCG YQPS
Sbjct: 126 VVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGH--GGCGHYQPSI 183
Query: 553 RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMIC 732
RR G+D++AEWK + NED+QE+KI+++AERV E+ + ITDE+ ++GMDP++ARP+WMI
Sbjct: 184 RRTGLDLSAEWK-HPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIV 242
Query: 733 TXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLL 912
T FG+AKNQDDLTHKLSDIIK N +L++NEA+GAAAHV+ +++++L
Sbjct: 243 TVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKML 302
Query: 913 QFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITAD 1092
QFHVATLVDN +PG+P A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 303 QFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 1093 PNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLR 1260
PNL ID VGVPR+IAQNLTFPE+VTPFN+D++QELV RG++QYPGAK +NG R+DLR
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
+HP+++DLHLQ GY+VERH++D D+++FNRQPTLHKMSMMGHRVK+LPWSTFRMNLS TS
Sbjct: 423 FHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 482
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLH+PQS+ETRAE+E I + PRQ+ITPQANKPVMGIVQDTL AVR MTK
Sbjct: 483 PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK 542
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFI +M+LLM+LPTWDGK+PQP ILKP+PLWTGKQ+FSLIIPGNVN++RTHSTHP
Sbjct: 543 RDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHP 602
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
D ED GPYKWISPGDTKV++EHG+L+ GI+C KT+G SAG+LLH+ LELG+EIA FY
Sbjct: 603 DEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYG 662
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
+IQTVIN WL+ EGH+IGIGDTIAD TY +IQ I+KAK DV++VI+KAHN +LEPTPG
Sbjct: 663 NIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPG 722
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVN+ILNDARD+TG SA+KSL+E+NN INISQVIACVGQ
Sbjct: 723 NTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ 782
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIP+GFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDT
Sbjct: 783 QNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT 842
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G VE QNMPT+K
Sbjct: 843 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVK 902
Query: 2701 PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIF 2880
+N FE+ F+ D ++ +++RK ++++V++EI +S + I +ESEW L DR LR IF
Sbjct: 903 LSNKAFEKRFKFDWSNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMHDRDNLRVIF 962
Query: 2881 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 3060
P GD+K+VLPCNLQR+IWN QKIF ++ R P +LSP+ VI GV+ L ++ +IV+G D IS
Sbjct: 963 PNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADRIS 1022
Query: 3061 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 3240
KQA NATLL L+RSTLCTK + + +L++EAF+WL+GEIE+RFQQA A PGEMVGAL
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGAL 1082
Query: 3241 AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD 3420
AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG AA+D
Sbjct: 1083 AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD 1142
Query: 3421 PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPW 3600
EKAK+VLC+LEHTTL+KVT NTAIYYDPDP+ TVI+ED+E+V+++YEMPD D +R SPW
Sbjct: 1143 AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPW 1202
Query: 3601 LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG--EDKGE 3774
LLRIELDRKRM DKKLTME IA++I+ GFG D++ I+ DDNA+KLV R+RI E+K +
Sbjct: 1203 LLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQ 1262
Query: 3775 AQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKS 3954
++E VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRI+IT G FK+
Sbjct: 1263 DEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKA 1322
Query: 3955 VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDG 4134
+ +W+LETDGT++++VLSER +DPVRT+SNDICEIF+VLGIEAVRK++E+EM+ V+ F G
Sbjct: 1323 IGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 4135 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDP 4314
YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+AA HAE DP
Sbjct: 1383 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDP 1442
Query: 4315 VKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV---VMGGGFYGSFAGSPSNR 4485
++GVSENI++GQL + GTGCFDL+LD EKC++G+EIP + ++GG F G S
Sbjct: 1443 MRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG--TAMFIGGGSTP 1500
Query: 4486 EFSPAHSPWNSGVTPTYAGAAWSPT--TGGMSPGA-GFSPAGNTD-GGASPFNEGGWSPA 4653
+P +PW + TP Y +SP M+PG FSP+ +D G SP WSPA
Sbjct: 1501 SMTPPMTPWVNCNTPRY----FSPPGHVSAMTPGGPSFSPSAASDASGMSP----SWSPA 1552
Query: 4654 SPG----DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
PG P ++SP P+ +SP YSP+SP +
Sbjct: 1553 HPGSSPSSPAPSMSPFYPASPSVSPS-YSPTSPNY 1586
Score = 49.7 bits (117), Expect = 8e-04
Identities = 36/110 (32%), Positives = 55/110 (49%), Gaps = 14/110 (12%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPF- 4629
S+ GSP + +++P SP S +P Y+ + +SP++ SP +SP G+T SP
Sbjct: 1769 SYDGSPGSPQYTPG-SPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRY 1827
Query: 4630 --NEGGWSPAS----PGDPLGA-----LSPRTPSYGGMSPGVYSPSSPQF 4746
N +SP+S P P SP +P Y +P YSP+SP +
Sbjct: 1828 SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAY 1877
Score = 48.9 bits (115), Expect = 0.001
Identities = 38/98 (38%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-----GAGFSPAGNTDGGASPFNE 4635
SPS SP ++P +PT + SP SP GA +SP T SP +
Sbjct: 1712 SPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYD 1771
Query: 4636 GGWSPASPGDPLGA--LSPRTPSYGGMSPGVYSPSSPQ 4743
G SP SP G+ SP +P Y SP +YSPSSPQ
Sbjct: 1772 G--SPGSPQYTPGSPQYSPASPKYSPTSP-LYSPSSPQ 1806
Score = 43.1 bits (100), Expect = 0.076
Identities = 38/106 (35%), Positives = 52/106 (48%), Gaps = 14/106 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGG-- 4641
SPS SP++SP + +PT +SP++ SP ++PA + SP
Sbjct: 1684 SPSYSPTSPSYSPSSPSYSPT--SPCYSPSSPSYSPTSPNYTPATPSYSPTSPNYSASPH 1741
Query: 4642 WSPASPG-DPLGA--------LSPRTPSYGGMSPG--VYSPSSPQF 4746
+SPASP GA SP +PSY G SPG Y+P SPQ+
Sbjct: 1742 YSPASPAYSQTGAKYSPTSPTYSPPSPSYDG-SPGSPQYTPGSPQY 1786
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II
complex [Drosophila guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit
[Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit
[Drosophila guanche]
Length = 1889
Score = 2178 bits (5644), Expect = 0.0
Identities = 1066/1595 (66%), Positives = 1298/1595 (80%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D +APLR V RVQFGIL P+EI+RMSV V+F E E G+PKLGGLMDPRQGVIDR
Sbjct: 6 DSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTS 65
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH++LAKPVFHIGF+TKT+KILRCVCFYC ++L+ P++ EI
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEI 125
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSY 552
+ K+ +KRL +YDLCK K++CEG GGCG YQPS
Sbjct: 126 VVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGH--GGCGHYQPSI 183
Query: 553 RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMIC 732
RR G+D++AEWK + NED+QE+KI+++AERV E+ + ITDE+ ++GMDP++ARP+WMI
Sbjct: 184 RRTGLDLSAEWK-HPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIV 242
Query: 733 TXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLL 912
T FG+AKNQDDLTHKLSDIIK N +L++NEA+GAAAHV+ +++++L
Sbjct: 243 TVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKML 302
Query: 913 QFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITAD 1092
QFHVATLVDN +PG+P A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 303 QFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 1093 PNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLR 1260
PNL ID VGVPR+IAQNLTFPE+VTPFN+D++QELV RG++QYPGAK +NG R+DLR
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
+HP+++DLHLQ GY+VERH++D D+++FNRQPTLHKMSMMGHRVK+LPWSTFRMNLS TS
Sbjct: 423 FHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 482
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLH+PQS+ETRAE+E I + PRQ+ITPQANKPVMGIVQDTL AVR MTK
Sbjct: 483 PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK 542
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFI +M+LLM+LPTWDGK+PQP ILKP+PLWTGKQ+FSLIIPGNVN++RTHSTHP
Sbjct: 543 RDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHP 602
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
D ED GPYKWISPGDTKV++EHG+L+ GI+C KT+G SAG+LLH+ LELG+EIA FY
Sbjct: 603 DEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYG 662
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
+IQTVIN WL+ EGH+IGIGDTIAD TY +IQ I+KAK DV++VI+KAHN +LEPTPG
Sbjct: 663 NIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPG 722
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVN+ILNDARD+TG SA+KSL+E+NN INISQVIACVGQ
Sbjct: 723 NTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ 782
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIP+GFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDT
Sbjct: 783 QNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT 842
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G VE QNMPT+K
Sbjct: 843 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVK 902
Query: 2701 PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIF 2880
+N FE+ F+ D ++ +++RK ++++V++E+ +S + I +ESEW L DR LR IF
Sbjct: 903 LSNKAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLRVIF 962
Query: 2881 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 3060
P GD+K+VLPCNLQR+IWN QKIF ++ R P +LSP+ VI GV+ L ++ +IV+G D IS
Sbjct: 963 PNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADRIS 1022
Query: 3061 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 3240
KQA NATLL L+RSTLCTK + + +L++EAF+WL+GEIE+RFQQA A PGEMVGAL
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGAL 1082
Query: 3241 AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD 3420
AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG AA+D
Sbjct: 1083 AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD 1142
Query: 3421 PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPW 3600
EKAK+VLC+LEHTTL+KVT NTAIYYDPDP+ TVI+ED+E+V+++YEMPD D +R SPW
Sbjct: 1143 AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPW 1202
Query: 3601 LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG--EDKGE 3774
LLRIELDRKRM DKKLTME IA++I+ GFG D++ I+ DDNA+KLV R+RI E+K +
Sbjct: 1203 LLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQ 1262
Query: 3775 AQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKS 3954
++E VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRI+IT G FK+
Sbjct: 1263 DEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKA 1322
Query: 3955 VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDG 4134
+ +W+LETDGT++++VLSER +DP+RT+SNDICEIF+VLGIEAVRK++E+EM+ V+ F G
Sbjct: 1323 IGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 4135 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDP 4314
YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+AA HAE DP
Sbjct: 1383 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDP 1442
Query: 4315 VKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV---VMGGGFYGSFAGSPSNR 4485
++GVSENI++GQL + GTGCFDL+LD EKC++G+EIP + ++GG F G S
Sbjct: 1443 MRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG--TAMFIGGGSTP 1500
Query: 4486 EFSPAHSPWNSGVTPTYAGAAWSPT--TGGMSPGA-GFSPAGNTD-GGASPFNEGGWSPA 4653
+P +PW + TP Y +SP M+PG FSP+ +D G SP WSPA
Sbjct: 1501 SMTPPMTPWVNCNTPRY----FSPPGHVSAMTPGGPSFSPSAASDASGMSP----SWSPA 1552
Query: 4654 SPG----DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
PG P ++SP P+ +SP YSP+SP +
Sbjct: 1553 HPGSSPSSPAPSMSPYYPASPSVSPS-YSPTSPNY 1586
Score = 49.7 bits (117), Expect = 8e-04
Identities = 36/110 (32%), Positives = 55/110 (49%), Gaps = 14/110 (12%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPF- 4629
S+ GSP + +++P SP S +P Y+ + +SP++ SP +SP G+T SP
Sbjct: 1769 SYDGSPGSPQYTPG-SPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRY 1827
Query: 4630 --NEGGWSPAS----PGDPLGA-----LSPRTPSYGGMSPGVYSPSSPQF 4746
N +SP+S P P SP +P Y +P YSP+SP +
Sbjct: 1828 SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAY 1877
Score = 48.9 bits (115), Expect = 0.001
Identities = 38/98 (38%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-----GAGFSPAGNTDGGASPFNE 4635
SPS SP ++P +PT + SP SP GA +SP T SP +
Sbjct: 1712 SPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYD 1771
Query: 4636 GGWSPASPGDPLGA--LSPRTPSYGGMSPGVYSPSSPQ 4743
G SP SP G+ SP +P Y SP +YSPSSPQ
Sbjct: 1772 G--SPGSPQYTPGSPQYSPASPKYSPTSP-LYSPSSPQ 1806
Score = 44.7 bits (104), Expect = 0.026
Identities = 39/106 (36%), Positives = 52/106 (48%), Gaps = 14/106 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGG-- 4641
SPS SP++SP + +PT +SPT+ SP ++PA + SP
Sbjct: 1684 SPSYSPTSPSYSPSSPSYSPT--SPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPH 1741
Query: 4642 WSPASPG-DPLGA--------LSPRTPSYGGMSPG--VYSPSSPQF 4746
+SPASP GA SP +PSY G SPG Y+P SPQ+
Sbjct: 1742 YSPASPAYSQTGAKYSPTSPTYSPPSPSYDG-SPGSPQYTPGSPQY 1786
>gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II
complex [Drosophila subobscura]
gi|9587179|gb|AAF89193.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587181|gb|AAF89194.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587183|gb|AAF89195.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587185|gb|AAF89196.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587187|gb|AAF89197.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587189|gb|AAF89198.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587191|gb|AAF89199.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587193|gb|AAF89200.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587195|gb|AAF89201.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587197|gb|AAF89202.1| RNA polymerase II largest subunit
[Drosophila subobscura]
gi|9587199|gb|AAF89203.1| RNA polymerase II largest subunit
[Drosophila subobscura]
Length = 1889
Score = 2178 bits (5644), Expect = 0.0
Identities = 1067/1595 (66%), Positives = 1298/1595 (80%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D +APLR V RVQFGIL P+EI+RMSV V+F E E G+PKLGGLMDPRQGVIDR
Sbjct: 6 DSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTS 65
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH++LAKPVFHIGF+TKT+KILRCVCFYC ++L+ P++ EI
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEI 125
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSY 552
+ K+ +KRL +YDLCK K++CEG GGCG YQPS
Sbjct: 126 VVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGH--GGCGHYQPSI 183
Query: 553 RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMIC 732
RR G+D++AEWK + NED+QE+KI+++AERV E+ + ITDE+ ++GMDP++ARP+WMI
Sbjct: 184 RRTGLDLSAEWK-HPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIV 242
Query: 733 TXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLL 912
T FG+AKNQDDLTHKLSDIIK N +L++NEA+GAAAHV+ +++++L
Sbjct: 243 TVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKML 302
Query: 913 QFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITAD 1092
QFHVATLVDN +PG+P A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 303 QFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 1093 PNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLR 1260
PNL ID VGVPR+IAQNLTFPE+VTPFN+D++QELV RG++QYPGAK +NG R+DLR
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
+HP+++DLHLQ GY+VERH++D D+++FNRQPTLHKMSMMGHRVK+LPWSTFRMNLS TS
Sbjct: 423 FHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 482
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLH+PQS+ETRAE+E I + PRQ+ITPQANKPVMGIVQDTL AVR MTK
Sbjct: 483 PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK 542
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFI +M+LLM+LPTWDGK+PQP ILKP+PLWTGKQ+FSLIIPGNVN++RTHSTHP
Sbjct: 543 RDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHP 602
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
D ED GPYKWISPGDTKV++EHG+L+ GI+C KT+G SAG+LLH+ LELG+EIA FY
Sbjct: 603 DEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYG 662
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
+IQTVIN WL+ EGH+IGIGDTIAD TY +IQ I+KAK DV++VI+KAHN +LEPTPG
Sbjct: 663 NIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPG 722
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVN+ILNDARD+TG SA+KSL+E+NN INISQVIACVGQ
Sbjct: 723 NTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ 782
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIP+GFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDT
Sbjct: 783 QNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT 842
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G VE QNMPT+K
Sbjct: 843 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVK 902
Query: 2701 PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIF 2880
+N FE+ F+ D ++ +++RK ++++V++E+ +S + I +ESEW L DR LR IF
Sbjct: 903 LSNKAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLRVIF 962
Query: 2881 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 3060
P GD+K+VLPCNLQR+IWN QKIF ++ R P +LSP+ VI GV+ L ++ +IV+G D IS
Sbjct: 963 PNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADRIS 1022
Query: 3061 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 3240
KQA NATLL L+RSTLCTK + + +L++EAF+WL+GEIE+RFQQA A PGEMVGAL
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGAL 1082
Query: 3241 AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD 3420
AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG AA+D
Sbjct: 1083 AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD 1142
Query: 3421 PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPW 3600
EKAK+VLC+LEHTTL+KVT NTAIYYDPDP+ TVI+ED+E+V+++YEMPD D +R SPW
Sbjct: 1143 AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPW 1202
Query: 3601 LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG--EDKGE 3774
LLRIELDRKRM DKKLTME IA++I+ GFG D++ I+ DDNA+KLV R+RI E+K +
Sbjct: 1203 LLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQ 1262
Query: 3775 AQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKS 3954
++E VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRI+IT G FK+
Sbjct: 1263 DEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKA 1322
Query: 3955 VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDG 4134
+ +W+LETDGT++++VLSER +DPVRT+SNDICEIF+VLGIEAVRK++E+EM+ V+ F G
Sbjct: 1323 IGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 4135 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDP 4314
YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+AA HAE DP
Sbjct: 1383 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDP 1442
Query: 4315 VKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV---VMGGGFYGSFAGSPSNR 4485
++GVSENI++GQL + GTGCFDL+LD EKC++G+EIP + ++GG F G S
Sbjct: 1443 MRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG--TAMFIGGGSTP 1500
Query: 4486 EFSPAHSPWNSGVTPTYAGAAWSPT--TGGMSPGA-GFSPAGNTD-GGASPFNEGGWSPA 4653
+P +PW + TP Y +SP M+PG FSP+ +D G SP WSPA
Sbjct: 1501 SMTPPMTPWVNCNTPRY----FSPPGHVSAMTPGGPSFSPSAASDASGMSP----SWSPA 1552
Query: 4654 SPG----DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
PG P ++SP P+ +SP YSP+SP +
Sbjct: 1553 HPGSSPSSPAPSMSPFYPASPSVSPS-YSPTSPNY 1586
Score = 49.7 bits (117), Expect = 8e-04
Identities = 36/110 (32%), Positives = 55/110 (49%), Gaps = 14/110 (12%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPF- 4629
S+ GSP + +++P SP S +P Y+ + +SP++ SP +SP G+T SP
Sbjct: 1769 SYDGSPGSPQYTPG-SPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRY 1827
Query: 4630 --NEGGWSPAS----PGDPLGA-----LSPRTPSYGGMSPGVYSPSSPQF 4746
N +SP+S P P SP +P Y +P YSP+SP +
Sbjct: 1828 SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAY 1877
Score = 48.9 bits (115), Expect = 0.001
Identities = 38/98 (38%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-----GAGFSPAGNTDGGASPFNE 4635
SPS SP ++P +PT + SP SP GA +SP T SP +
Sbjct: 1712 SPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYD 1771
Query: 4636 GGWSPASPGDPLGA--LSPRTPSYGGMSPGVYSPSSPQ 4743
G SP SP G+ SP +P Y SP +YSPSSPQ
Sbjct: 1772 G--SPGSPQYTPGSPQYSPASPKYSPTSP-LYSPSSPQ 1806
Score = 43.1 bits (100), Expect = 0.076
Identities = 38/106 (35%), Positives = 52/106 (48%), Gaps = 14/106 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGG-- 4641
SPS SP++SP + +PT +SP++ SP ++PA + SP
Sbjct: 1684 SPSYSPTSPSYSPSSPSYSPT--SPCYSPSSPSYSPTSPNYTPATPSYSPTSPNYSASPH 1741
Query: 4642 WSPASPG-DPLGA--------LSPRTPSYGGMSPG--VYSPSSPQF 4746
+SPASP GA SP +PSY G SPG Y+P SPQ+
Sbjct: 1742 YSPASPAYSQTGAKYSPTSPTYSPPSPSYDG-SPGSPQYTPGSPQY 1786
>gi|17530899|ref|NP_511124.1| CG1554-PA [Drosophila melanogaster]
gi|14286163|sp|P04052|RPB1_DROME DNA-directed RNA polymerase II
largest subunit
gi|7292659|gb|AAF48057.1| CG1554-PA [Drosophila melanogaster]
Length = 1887
Score = 2177 bits (5640), Expect = 0.0
Identities = 1064/1595 (66%), Positives = 1297/1595 (80%), Gaps = 19/1595 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D +APLR V RVQFGIL P+EI+RMSV V+F E E G+PKLGGLMDPRQGVIDR
Sbjct: 6 DSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTS 65
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH++LAKPVFHIGF+TKT+KILRCVCFYC ++L+ P++ EI
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEI 125
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSY 552
+ K+ +KRL +YDLCK K++CEG GGCG YQPS
Sbjct: 126 VMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGH--GGCGHYQPSI 183
Query: 553 RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMIC 732
RR G+D+ AEWK NED+QE+KI+++AERV E+ + ITDE+ ++GMDP++ARP+WMI
Sbjct: 184 RRTGLDLTAEWKHQ-NEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIV 242
Query: 733 TXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLL 912
T FG+AKNQDDLTHKLSDIIK N +L++NEA+GAAAHV+ +++++L
Sbjct: 243 TVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKML 302
Query: 913 QFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITAD 1092
QFHVATLVDN +PG+P A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 303 QFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 1093 PNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLR 1260
PNL ID VGVPR+IAQNLTFPE+VTPFN+D++QELV RG++QYPGAK +NG R+DLR
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
+HP+++DLHLQ GY+VERH++D D+++FNRQPTLHKMSMMGHRVK+LPWSTFRMNLS TS
Sbjct: 423 FHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 482
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLH+PQS+ETRAE+E I + PRQ+ITPQANKPVMGIVQDTL AVR MTK
Sbjct: 483 PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK 542
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFI +M+LLM+LPTWD K+PQP ILKP+PLWTGKQ+FSLIIPGNVN++RTHSTHP
Sbjct: 543 RDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHP 602
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
D ED GPYKWISPGDTKV++EHGEL+ GI+C K++G SAG+LLH+ LELG++IA FY
Sbjct: 603 DEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYG 662
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
+IQTVIN WL+ EGH+IGIGDTIAD TY +IQ I+KAK DV++VI+KAHN +LEPTPG
Sbjct: 663 NIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPG 722
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVN+ILNDARD+TG SA+KSL+E+NN INISQVIACVGQ
Sbjct: 723 NTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ 782
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIP+GFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDT
Sbjct: 783 QNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT 842
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G VE QNMPT+K
Sbjct: 843 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVK 902
Query: 2701 PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIF 2880
+N FE+ F+ D ++ + ++K +++DV++E+ +S + I +E+EW +L DR LR+IF
Sbjct: 903 LSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIF 962
Query: 2881 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 3060
P G++K+VLPCNLQR+IWN QKIF ++ R P +LSP+ VI GV+ L ++ +IV+GND IS
Sbjct: 963 PNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRIS 1022
Query: 3061 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 3240
KQA NATLL L+RSTLCTK + + +L++EAF+WL+GEIE+RFQQA A PGEMVGAL
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGAL 1082
Query: 3241 AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD 3420
AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG AA+D
Sbjct: 1083 AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD 1142
Query: 3421 PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPW 3600
EKAK+VLC+LEHTTL+KVT NTAIYYDPDP+ TVI+ED+E+V+++YEMPD D +R SPW
Sbjct: 1143 AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPW 1202
Query: 3601 LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG--EDKGE 3774
LLRIELDRKRM DKKLTME IA++I+ GFG D++ I+ DDNA+KLV R+RI E+K +
Sbjct: 1203 LLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQ 1262
Query: 3775 AQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKS 3954
++E VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRI+IT G FK+
Sbjct: 1263 DEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKA 1322
Query: 3955 VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDG 4134
+ +W+LETDGT++++VLSER +DP+RT+SNDICEIF+VLGIEAVRK++E+EM+ V+ F G
Sbjct: 1323 IGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 4135 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDP 4314
YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+AA HAE DP
Sbjct: 1383 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDP 1442
Query: 4315 VKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQ---NVVMGGGFYGSFAGSPSNR 4485
++GVSENI++GQL + GTGCFDL+LD EKC++G+EIP N ++GG F G S
Sbjct: 1443 MRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGA--AMFIGGGSTP 1500
Query: 4486 EFSPAHSPWNSGVTPTYAGAAWSPT--TGGMSPGA-GFSPAGNTD-GGASPFNEGGWSPA 4653
+P +PW + TP Y +SP M+PG FSP+ +D G SP WSPA
Sbjct: 1501 SMTPPMTPWANCNTPRY----FSPPGHVSAMTPGGPSFSPSAASDASGMSP----SWSPA 1552
Query: 4654 SPG----DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
PG P ++SP P+ +SP YSP+SP +
Sbjct: 1553 HPGSSPSSPGPSMSPYFPASPSVSPS-YSPTSPNY 1586
Score = 49.7 bits (117), Expect = 8e-04
Identities = 36/110 (32%), Positives = 55/110 (49%), Gaps = 14/110 (12%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPF- 4629
S+ GSP + +++P SP S +P Y+ + +SP++ SP +SP G+T SP
Sbjct: 1767 SYDGSPGSPQYTPG-SPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRY 1825
Query: 4630 --NEGGWSPAS----PGDPLGA-----LSPRTPSYGGMSPGVYSPSSPQF 4746
N +SP+S P P SP +P Y +P YSP+SP +
Sbjct: 1826 SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAY 1875
Score = 47.8 bits (112), Expect = 0.003
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-----GAGFSPAGNTDGGASPFNE 4635
SPS SP ++P +PT + SP SP G +SP T SP +
Sbjct: 1710 SPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769
Query: 4636 GGWSPASPGDPLGA--LSPRTPSYGGMSPGVYSPSSPQ 4743
G SP SP G+ SP +P Y SP +YSPSSPQ
Sbjct: 1770 G--SPGSPQYTPGSPQYSPASPKYSPTSP-LYSPSSPQ 1804
Score = 42.4 bits (98), Expect = 0.13
Identities = 37/106 (34%), Positives = 50/106 (46%), Gaps = 14/106 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGG-- 4641
SPS SP++SP + +PT +SPT+ SP ++P + SP
Sbjct: 1682 SPSYSPTSPSYSPSSPSYSPT--SPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQ 1739
Query: 4642 WSPASPG--------DPLG-ALSPRTPSYGGMSPG--VYSPSSPQF 4746
+SPASP P SP +PSY G SPG Y+P SPQ+
Sbjct: 1740 YSPASPAYSQTGVKYSPTSPTYSPPSPSYDG-SPGSPQYTPGSPQY 1784
>gi|279533|pir||RNFF2L DNA-directed RNA polymerase (EC 2.7.7.6) II
215K chain [validated] - fruit fly (Drosophila
melanogaster)
gi|158332|gb|AAA28868.1| RNA polymerase II
Length = 1896
Score = 2169 bits (5619), Expect = 0.0
Identities = 1063/1597 (66%), Positives = 1295/1597 (80%), Gaps = 21/1597 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D +APLR V RVQFGIL P+EI+RMSV V+F E E G+PKLGGLMDPRQGVIDR
Sbjct: 6 DSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTS 65
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH++LAKPVFHIGF+TKT+KILRCVCFYC ++L+ P++ EI
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEI 125
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSY 552
+ K+ +KRL +YDLCK K++CEG GGCG YQPS
Sbjct: 126 VMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGH--GGCGHYQPSI 183
Query: 553 RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMIC 732
RR G+D+ AEWK NED+QE+KI+++AERV E+ + ITDE+ ++GMDP++ARP+WMI
Sbjct: 184 RRTGLDLTAEWKHQ-NEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIV 242
Query: 733 TXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLL 912
T FG+AKNQDDLTHKLSDIIK N +L++NEA+GAAAHV+ +++++L
Sbjct: 243 TVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKML 302
Query: 913 QFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITAD 1092
QFHVATLVDN +PG+P A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 303 QFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 1093 PNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLR 1260
PNL ID VGVPR+IAQNLTFPE+VTPFN+D++QELV RG++QYPGAK +NG R+DLR
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
+HP+++DLHLQ GY+VERH++D D+++FNRQPTLHKMSMMGHRVK+LPWSTFRMNLS TS
Sbjct: 423 FHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS 482
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLH+PQS+ETRAE+E I + PRQ+ITPQANKPVMGIVQDTL AVR MTK
Sbjct: 483 PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK 542
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
RDVFI +M+LLM+LPTWD K+PQP ILKP+PLWTGKQ+FSLIIPGNVN++RTHSTHP
Sbjct: 543 RDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHP 602
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
D ED GPYKWISPGDTKV++EHGEL+ GI+C K++G SAG+LLH+ LELG++IA FY
Sbjct: 603 DEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYG 662
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
+IQTVIN WL+ EGH+IGIGDTIAD TY +IQ I+KAK DV++VI+KAHN +LEPTPG
Sbjct: 663 NIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPG 722
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
NTLRQTFENKVN+ILNDA D+TG SA+KSL+E+NN INISQVIACVGQ
Sbjct: 723 NTLRQTFENKVNRILNDAHDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ 782
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNVEGKRIP+GFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDT
Sbjct: 783 QNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT 842
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G VE QNMPT+K
Sbjct: 843 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVK 902
Query: 2701 PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIF 2880
+N FE+ F+ D ++ + ++K +++DV++E+ +S + I +E+EW +L DR LR+IF
Sbjct: 903 LSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIF 962
Query: 2881 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 3060
P G++K+VLPCNLQR+IWN QKIF ++ R P +LSP+ VI GV+ L ++ +IV+GND IS
Sbjct: 963 PNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRIS 1022
Query: 3061 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 3240
KQA NATLL L+RSTLCTK + + +L++EAF+WL+GEIE+RFQQA A PGEMVGAL
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGAL 1082
Query: 3241 AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD 3420
AAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG AA+D
Sbjct: 1083 AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD 1142
Query: 3421 PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPW 3600
EKAK+VLC+LEHTTL+KVT NTAIYYDPDP+ TVI+ED+E+V+++YEMPD D +R SPW
Sbjct: 1143 AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPW 1202
Query: 3601 LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG--EDKGE 3774
LLRIELDRKRM DKKLTME IA++I+ GFG D++ I+ DDNA+KLV R+RI E+K +
Sbjct: 1203 LLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQ 1262
Query: 3775 AQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKS 3954
++E VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRI+IT G FK+
Sbjct: 1263 DEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKA 1322
Query: 3955 VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDG 4134
+ +W+LETDGT++++VLSER +DP+RT+SNDICEIF+VLGIEAVRK++E+EM+ V+ F G
Sbjct: 1323 IGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 4135 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDP 4314
YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+AA HAE DP
Sbjct: 1383 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDP 1442
Query: 4315 VKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQ---NVVMGGGFYGSFAGSPSNR 4485
++GVSENI++GQL + GTGCFDL+LD EKC++G+EIP N ++GG F G S
Sbjct: 1443 MRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGA--AMFIGGGSTP 1500
Query: 4486 EFSPAH--SPWNSGVTPTYAGAAWSPT--TGGMSPGA-GFSPAGNTD-GGASPFNEGGWS 4647
+P S W + TP Y +SP M+PG FSP+ +D G SP WS
Sbjct: 1501 SMTPPELDSAWANCNTPRY----FSPPGHVSAMTPGGPSFSPSAASDASGMSP----SWS 1552
Query: 4648 PASPG----DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
PA PG P ++SP P+ +SP YSP+SP +
Sbjct: 1553 PAHPGSSPSSPGPSMSPYFPASPSVSPS-YSPTSPNY 1588
Score = 49.7 bits (117), Expect = 8e-04
Identities = 36/110 (32%), Positives = 55/110 (49%), Gaps = 14/110 (12%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPF- 4629
S+ GSP + +++P SP S +P Y+ + +SP++ SP +SP G+T SP
Sbjct: 1769 SYDGSPGSPQYTPG-SPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRY 1827
Query: 4630 --NEGGWSPAS----PGDPLGA-----LSPRTPSYGGMSPGVYSPSSPQF 4746
N +SP+S P P SP +P Y +P YSP+SP +
Sbjct: 1828 SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAY 1877
Score = 47.8 bits (112), Expect = 0.003
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-----GAGFSPAGNTDGGASPFNE 4635
SPS SP ++P +PT + SP SP G +SP T SP +
Sbjct: 1712 SPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1771
Query: 4636 GGWSPASPGDPLGA--LSPRTPSYGGMSPGVYSPSSPQ 4743
G SP SP G+ SP +P Y SP +YSPSSPQ
Sbjct: 1772 G--SPGSPQYTPGSPQYSPASPKYSPTSP-LYSPSSPQ 1806
Score = 42.4 bits (98), Expect = 0.13
Identities = 37/106 (34%), Positives = 50/106 (46%), Gaps = 14/106 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGG-- 4641
SPS SP++SP + +PT +SPT+ SP ++P + SP
Sbjct: 1684 SPSYSPTSPSYSPSSPSYSPT--SPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQ 1741
Query: 4642 WSPASPG--------DPLG-ALSPRTPSYGGMSPG--VYSPSSPQF 4746
+SPASP P SP +PSY G SPG Y+P SPQ+
Sbjct: 1742 YSPASPAYSQTGVKYSPTSPTYSPPSPSYDG-SPGSPQYTPGSPQY 1786
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II
complex [Drosophila pseudoobscura]
Length = 1811
Score = 2076 bits (5380), Expect = 0.0
Identities = 1014/1522 (66%), Positives = 1242/1522 (80%), Gaps = 17/1522 (1%)
Frame = +1
Query: 232 GHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLT 411
GHFGH++LAKPVFHIGF+TKT+KILRCVCFYC ++L+ P++ EI+ K+ +KRL
Sbjct: 1 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLA 60
Query: 412 MIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKK 591
+YDLCK K++CEG GGCG YQPS RR G+D++AEWK
Sbjct: 61 YVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGH--GGCGHYQPSIRRTGLDLSAEWK- 117
Query: 592 NVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXX 771
+ NED+QE+KI+++AERV E+ + ITDE+ ++GMDP++ARP+WMI T
Sbjct: 118 HPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPA 177
Query: 772 XXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIP 951
FG+AKNQDDLTHKLSDIIK N +L++NEA+GAAAHV+ +++++LQFHVATLVDN +P
Sbjct: 178 VVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMP 237
Query: 952 GLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRT 1131
G+P A QK G+PLK+IK RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL ID VGVPR+
Sbjct: 238 GMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRS 297
Query: 1132 IAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPG 1299
IAQNLTFPE+VTPFN+D++QELV RG++QYPGAK +NG R+DLR+HP+++DLHLQ G
Sbjct: 298 IAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCG 357
Query: 1300 YRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNL 1479
Y+VERH++D D+++FNRQPTLHKMSMMGHRVK+LPWSTFRMNLS TSPYNADFDGDEMNL
Sbjct: 358 YKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNL 417
Query: 1480 HLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDL 1659
H+PQS+ETRAE+E I + PRQ+ITPQANKPVMGIVQDTL AVR MTKRDVFI +M+L
Sbjct: 418 HVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNL 477
Query: 1660 LMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISP 1839
LM+LPTWDGK+PQP ILKP+PLWTGKQ+FSLIIPGNVN++RTHSTHPD ED GPYKWISP
Sbjct: 478 LMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISP 537
Query: 1840 GDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIRE 2019
GDTKV++EHG+L+ GI+C KT+G SAG+LLH+ LELG+EIA FY +IQTVIN WL+ E
Sbjct: 538 GDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVINNWLLLE 597
Query: 2020 GHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQ 2199
GH+IGIGDTIAD TY +IQ I+KAK DV++VI+KAHN +LEPTPGNTLRQTFENKVN+
Sbjct: 598 GHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNR 657
Query: 2200 ILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFR 2379
ILNDARD+TG SA+KSL+E+NN INISQVIACVGQQNVEGKRIP+GFR
Sbjct: 658 ILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFR 717
Query: 2380 HRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 2559
RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRR
Sbjct: 718 KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRR 777
Query: 2560 LIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMD 2739
LIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G V+ QNMPT+K +N FE+ F+ D
Sbjct: 778 LIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVDFQNMPTVKLSNKAFEKRFKFD 837
Query: 2740 LTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNL 2919
++ +++RK ++++V++E+ +S + I +ESEW L +DR LR+IFP GD+K+VLPCNL
Sbjct: 838 WSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLRQIFPNGDSKVVLPCNL 897
Query: 2920 QRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNI 3099
QR+IWN QKIF ++ R P +LSP+ VI GV+ L ++ +IV+G D ISKQA NATLL
Sbjct: 898 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADRISKQANENATLLFQC 957
Query: 3100 LLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMT 3279
L+RSTLCTK + + +L++EAF+WL+GEIE+RFQQA A PGEMVGALAAQSLGEPATQMT
Sbjct: 958 LIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMT 1017
Query: 3280 LNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEH 3459
LNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG AA+D EKAK+VLC+LEH
Sbjct: 1018 LNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEH 1077
Query: 3460 TTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVD 3639
TTL+KVT NTAIYYDPDP+ TVI+ED+E+V+++YEMPD D +R SPWLLRIELDRKRM D
Sbjct: 1078 TTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTD 1137
Query: 3640 KKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG--EDKGEAQEEQVDKMEDDV 3813
KKLTME IA++I+ GFG D++ I+ DDNA+KLV R+RI E+K + ++E VDKMEDD+
Sbjct: 1138 KKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDM 1197
Query: 3814 FLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTAL 3993
FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRI+IT G FK++ +W+LETDGT++
Sbjct: 1198 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSM 1257
Query: 3994 LRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCD 4173
++VLSER +DP+RT+SNDICEIF+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCD
Sbjct: 1258 MKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCD 1317
Query: 4174 VMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQL 4353
VMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL
Sbjct: 1318 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQL 1377
Query: 4354 ARCGTGCFDLVLDVEKCKYGMEIPQNV---VMGGGFYGSFAGSPSNREFSPAHSPWNSGV 4524
+ GTGCFDL+LD EKC++G+EIP + ++GG F G S +P +PW +
Sbjct: 1378 PKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG--TAMFIGGGSTPSMTPPMTPWVNCN 1435
Query: 4525 TPTYAGAAWSPT--TGGMSPGA-GFSPAGNTD-GGASPFNEGGWSPASPG----DPLGAL 4680
TP Y +SP M+PG FSP+ +D G SP WSPA PG P ++
Sbjct: 1436 TPRY----FSPPGHVSAMTPGGPSFSPSAASDASGMSP----SWSPAHPGSSPSSPAPSM 1487
Query: 4681 SPRTPSYGGMSPGVYSPSSPQF 4746
SP P+ +SP YSP+SP +
Sbjct: 1488 SPYYPASPSVSPS-YSPTSPNY 1508
Score = 49.7 bits (117), Expect = 8e-04
Identities = 36/110 (32%), Positives = 55/110 (49%), Gaps = 14/110 (12%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPF- 4629
S+ GSP + +++P SP S +P Y+ + +SP++ SP +SP G+T SP
Sbjct: 1691 SYDGSPGSPQYTPG-SPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRY 1749
Query: 4630 --NEGGWSPAS----PGDPLGA-----LSPRTPSYGGMSPGVYSPSSPQF 4746
N +SP+S P P SP +P Y +P YSP+SP +
Sbjct: 1750 SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAY 1799
Score = 48.9 bits (115), Expect = 0.001
Identities = 38/98 (38%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-----GAGFSPAGNTDGGASPFNE 4635
SPS SP ++P +PT + SP SP GA +SP T SP +
Sbjct: 1634 SPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYD 1693
Query: 4636 GGWSPASPGDPLGA--LSPRTPSYGGMSPGVYSPSSPQ 4743
G SP SP G+ SP +P Y SP +YSPSSPQ
Sbjct: 1694 G--SPGSPQYTPGSPQYSPASPKYSPTSP-LYSPSSPQ 1728
Score = 44.7 bits (104), Expect = 0.026
Identities = 39/106 (36%), Positives = 52/106 (48%), Gaps = 14/106 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGG-- 4641
SPS SP++SP + +PT +SPT+ SP ++PA + SP
Sbjct: 1606 SPSYSPTSPSYSPSSPSYSPT--SPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPH 1663
Query: 4642 WSPASPG-DPLGA--------LSPRTPSYGGMSPG--VYSPSSPQF 4746
+SPASP GA SP +PSY G SPG Y+P SPQ+
Sbjct: 1664 YSPASPAYSQTGAKYSPTSPTYSPPSPSYDG-SPGSPQYTPGSPQY 1708
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit
Length = 1340
Score = 1950 bits (5052), Expect = 0.0
Identities = 940/1342 (70%), Positives = 1122/1342 (83%), Gaps = 6/1342 (0%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
H+ELAKPVFHIGFL KT+KILRCVCF+C +LL+D + P++ EIL K+ +KRL +YD
Sbjct: 1 HIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPKIKEILSKSKAYPRKRLVAVYD 60
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVNE 603
LCK++ VCEG GGCGRYQP +R G+++ AEWK + NE
Sbjct: 61 LCKSRKVCEGGDEMDNAKLGEETQEGDQKKG-HGGCGRYQPKIKRTGLELIAEWK-DTNE 118
Query: 604 DTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXTF 783
D+QE+KI+LTA+RV E+F++I+D++ V+GMD +++RP+WMI T F
Sbjct: 119 DSQEKKIVLTADRVHEIFKRISDDECQVLGMDHRYSRPDWMIVTVMPVPPLAVRPAVVMF 178
Query: 784 GSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPT 963
GSA+NQDDLTHKL+DIIK N QL+RNE NGAA+H++++D+++LQ+HVAT DN +PGLP
Sbjct: 179 GSARNQDDLTHKLADIIKANNQLRRNEQNGAASHIISEDMKMLQYHVATFTDNELPGLPK 238
Query: 964 ATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQN 1143
A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID VGVPR+IAQN
Sbjct: 239 AVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 298
Query: 1144 LTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVE 1311
+TFPE+VTPFN+D++QELV RG QYPGAK +NG R+DLR+HP+A+DLHLQ GY+VE
Sbjct: 299 MTFPELVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVE 358
Query: 1312 RHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQ 1491
RHM+D D IVFNRQPTLHKMSMM H+VK+LPWSTFR+NLSVT+PYNADFDGDEMNLHLPQ
Sbjct: 359 RHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNADFDGDEMNLHLPQ 418
Query: 1492 SLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYL 1671
SLET+AEI +A+VPR +ITPQAN+PVMGIVQDTL AVR MTKRDVF+D +M+LLM+L
Sbjct: 419 SLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLDRGQVMNLLMFL 478
Query: 1672 PTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTK 1851
P WDG VPQPAILKPKPLWTGKQ+FSL+IPG N +RTHSTHPD ED GPYKWISPGDTK
Sbjct: 479 PRWDGHVPQPAILKPKPLWTGKQLFSLVIPGRTNCIRTHSTHPDEEDKGPYKWISPGDTK 538
Query: 1852 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTI 2031
V+IE G L+SGI+C KT+G S+G+L HVV +E G+ IA Y HIQT++N WL+ EGH+I
Sbjct: 539 VLIEDGMLISGILCKKTLGTSSGSLAHVVFMEYGWVIAGEMYGHIQTLVNNWLLLEGHSI 598
Query: 2032 GIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILND 2211
GIGDTIAD TY+DIQ+TI+KAK DV++VIEKAHNDDLEPTPGNTLRQTFEN VN+ILND
Sbjct: 599 GIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAHNDDLEPTPGNTLRQTFENMVNRILND 658
Query: 2212 ARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTL 2391
ARD+TGS AQKSLS++NNF INISQVIACVGQQNVEGKRIPFGFRHRTL
Sbjct: 659 ARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTL 718
Query: 2392 PHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 2571
PHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKA
Sbjct: 719 PHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKA 778
Query: 2572 MESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDN 2751
MESVMV YDGTVRN + Q+VQLRYGEDGLD VE Q MPT+KP+N FER F+ D T+
Sbjct: 779 MESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRAFERQFKFDATNE 838
Query: 2752 KFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLI 2931
+ ++K SE+V++++ +S ++ EW QL EDR +LR IFP GD+K+VLPCNLQR+I
Sbjct: 839 RNMKKCLSEEVIKDLMGDALAVSQLDREWEQLREDRDILRSIFPTGDSKVVLPCNLQRMI 898
Query: 2932 WNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRS 3111
WNAQKIF++D KP +L P+ V+ GV +L K+LI+V+G D +S QA NATLL L+RS
Sbjct: 899 WNAQKIFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATLLFKCLIRS 958
Query: 3112 TLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTF 3291
TLC K + + +L+SEAF+WL+GE+ESRFQQA A PGEMVGALAAQSLGEPATQMTLNTF
Sbjct: 959 TLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQSLGEPATQMTLNTF 1018
Query: 3292 HYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLK 3471
HYAGVSAKNVTLGVPRLKEIIN+SK KTPSLTV+L G AA+D EKAKDVLC+LEHTTL+
Sbjct: 1019 HYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQAARDAEKAKDVLCRLEHTTLR 1078
Query: 3472 KVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLT 3651
KVT NTAIYYDPDP+NTVI+ED+EWV+++YEMPD D+S+ S WLLRIELDRKRM DKKLT
Sbjct: 1079 KVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFDVSKISAWLLRIELDRKRMTDKKLT 1138
Query: 3652 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQ--EEQVDKMEDDVFLRC 3825
ME I+++I GFG+D++ I+ DDNAEKLV R+RI D+ + Q EE VDKMEDDVFLRC
Sbjct: 1139 MEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESKMQNEEEIVDKMEDDVFLRC 1198
Query: 3826 IEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL 4005
IEAN+LSD+TLQGI AI+KVYM+ PNT+DKKRI IT EG FK+VA+WILETDGTAL++VL
Sbjct: 1199 IEANLLSDMTLQGIEAIAKVYMHLPNTEDKKRISITEEGEFKAVAEWILETDGTALMKVL 1258
Query: 4006 SERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTA 4185
S+R +DP+RTT+NDI E+F +LGIEAVRK+IE+EM++VISFDGSYVNYRHL+LLCD MTA
Sbjct: 1259 SQRDVDPIRTTTNDIVEVFSILGIEAVRKSIEKEMNHVISFDGSYVNYRHLSLLCDSMTA 1318
Query: 4186 KGHLMAITRHGINRQEVGALMR 4251
KGHLMAITRHGINRQE GAL R
Sbjct: 1319 KGHLMAITRHGINRQETGALAR 1340
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit
Length = 1343
Score = 1935 bits (5012), Expect = 0.0
Identities = 943/1344 (70%), Positives = 1113/1344 (82%), Gaps = 8/1344 (0%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
H+ELAKPVFH+ FL KT+KI+RCVCF+C +LL+D + ++ +IL K+ +KRL +YD
Sbjct: 1 HIELAKPVFHVAFLVKTIKIMRCVCFFCSKLLVDPESNKMKDILGKSKGYPQKRLAHVYD 60
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQPSYRRVGIDINAEWKKNV 597
LCK + VC+G G GCGRYQP RR G++I AEWK N+
Sbjct: 61 LCKTRKVCDGGDEMDKKNQDPTAGESTEENAPKGHGGCGRYQPKLRRTGLEIVAEWK-NI 119
Query: 598 NEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXX 777
NE++QERK++++AERVLE+F++I+DE+ L++GMDP+FARP+WMI T
Sbjct: 120 NEESQERKMIVSAERVLEIFKRISDEESLMLGMDPRFARPDWMILTVFPVPPLPVRPAVV 179
Query: 778 TFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGL 957
FGSA+NQDDLTHKL+DI+K N QL+RNE NGAAAH++ +D ++LQ+H +TLVDN +PGL
Sbjct: 180 MFGSARNQDDLTHKLADIVKANNQLRRNEQNGAAAHIIFEDSKMLQYHCSTLVDNEMPGL 239
Query: 958 PTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIA 1137
P A QK GRPLKS+KQRLKGKEGR+RGNLM KRVDFS RTVIT DPNL +D VGVPR+IA
Sbjct: 240 PRAVQKSGRPLKSVKQRLKGKEGRVRGNLMDKRVDFSGRTVITPDPNLRVDQVGVPRSIA 299
Query: 1138 QNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYR 1305
NLTFPE+VTPFN+D +QE V RG YPGAK +NG R+DLR+HP+A+DLHLQ GY+
Sbjct: 300 HNLTFPELVTPFNIDVMQERVRRGANVYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYK 359
Query: 1306 VERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHL 1485
VERHM+D D+++FNRQPTLHKMSMM HRVK+LPWSTFRMNLSVT+PYNADFDGDEMNLHL
Sbjct: 360 VERHMQDNDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRMNLSVTTPYNADFDGDEMNLHL 419
Query: 1486 PQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLM 1665
PQSLETRAEI + VPR +ITPQAN+PVMGIVQDTL AVR MTKRDVF+ MM LLM
Sbjct: 420 PQSLETRAEIMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLTRAQMMHLLM 479
Query: 1666 YLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGD 1845
+LPTWDG++PQPAI+KP+PLWTGKQ+FSL+IPG VNV+RTHSTHPD EDSGPYKWISPGD
Sbjct: 480 FLPTWDGRMPQPAIIKPEPLWTGKQIFSLVIPGRVNVIRTHSTHPDGEDSGPYKWISPGD 539
Query: 1846 TKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGH 2025
TKV+IE GEL+SGI+C KT+G SAG+L+H+V LE+G+E+A Y +IQTV+N WL+ EGH
Sbjct: 540 TKVLIEDGELISGILCKKTLGTSAGSLVHIVFLEMGFEVAGELYGNIQTVVNNWLLIEGH 599
Query: 2026 TIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQIL 2205
+IGIGDTIADQ TY +IQ TIRKAK DV++VIEKAHND+LEPTPGNTLRQTFEN+VN+IL
Sbjct: 600 SIGIGDTIADQQTYHEIQETIRKAKADVIEVIEKAHNDELEPTPGNTLRQTFENQVNRIL 659
Query: 2206 NDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHR 2385
NDARD+TGS AQKSLSEFNNF INISQVIACVGQQN EGKRIPFGFR+R
Sbjct: 660 NDARDKTGSKAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNAEGKRIPFGFRYR 719
Query: 2386 TLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 2565
TLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLI
Sbjct: 720 TLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLI 779
Query: 2566 KAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLT 2745
KAMESVMV YDGTVRN + Q+VQL YGEDGLD VE Q++PT+KP+ FER FR D T
Sbjct: 780 KAMESVMVKYDGTVRNQVEQLVQLGYGEDGLDACHVEFQSLPTLKPSTRAFERQFRFDPT 839
Query: 2746 DNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQR 2925
D + +++ EDV++ ++ I +ESEW QL DR R++F GDA+IVLPCNLQR
Sbjct: 840 DERMMKRCLKEDVIKGLRGEHRLIEELESEWLQLISDRDSARQVFSTGDARIVLPCNLQR 899
Query: 2926 LIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILL 3105
+IWNAQKIF++D RKP +L P++V+SGVR+L ++L IV G D ISKQA NATLLM L+
Sbjct: 900 MIWNAQKIFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGEDMISKQANENATLLMKCLI 959
Query: 3106 RSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLN 3285
RSTLC K + + +L+ +AF+WLLGEIE+RFQQA A PGEMVGALAAQSLGEPATQMTLN
Sbjct: 960 RSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQSLGEPATQMTLN 1019
Query: 3286 TFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTT 3465
TFHYAGVSAKNVTLGVPRLKEIIN+SK KTPSLTV+L G AA+D EK KDVLC+LEHTT
Sbjct: 1020 TFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLNGPAARDAEKCKDVLCRLEHTT 1079
Query: 3466 LKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKK 3645
L+KVT NTAIYYDPDP NTVI ED+EWVSI+YEMPD D SR SPWLLRIELDRKRM DKK
Sbjct: 1080 LRKVTANTAIYYDPDPMNTVIVEDQEWVSIYYEMPDFDASRISPWLLRIELDRKRMTDKK 1139
Query: 3646 LTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ--VDKMEDDVFL 3819
LTME I+++I GFG+D++ I+ DDNAEKLV R+RI D + Q+E+ VDKMEDDVFL
Sbjct: 1140 LTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEEVVDKMEDDVFL 1199
Query: 3820 RCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLR 3999
RCIE+N+LSD+TLQGI AI+KVYM+ P TDDKKRI IT EG FK+VA+WILETDG++L++
Sbjct: 1200 RCIESNLLSDMTLQGIEAIAKVYMHLPTTDDKKRIHITEEGEFKAVAEWILETDGSSLMK 1259
Query: 4000 VLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVM 4179
VLSER +DPVRT +NDI E+F LGIEAVRKAIEREM +VISFDGSYVNYRHLALLCDVM
Sbjct: 1260 VLSERDVDPVRTYTNDIVEVFATLGIEAVRKAIEREMVHVISFDGSYVNYRHLALLCDVM 1319
Query: 4180 TAKGHLMAITRHGINRQEVGALMR 4251
TAKGHLMAITRHGINRQE GAL R
Sbjct: 1320 TAKGHLMAITRHGINRQETGALAR 1343
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit [Artemia
salina]
Length = 1341
Score = 1919 bits (4970), Expect = 0.0
Identities = 930/1342 (69%), Positives = 1111/1342 (82%), Gaps = 6/1342 (0%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
H+ELAKPVFH+GFLTKT+KI+RCVCFYC +LL+ + P++ E++ KT +KRL IYD
Sbjct: 1 HIELAKPVFHVGFLTKTIKIIRCVCFYCSKLLVSPNNPKIKEVILKTKGQPRKRLAAIYD 60
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVNE 603
LCK K++CEG GGCGRYQP RR+G+D+ AEWK +VNE
Sbjct: 61 LCKGKNICEGGDEMDMARDQEDLSLSQAKKVGHGGCGRYQPKIRRIGLDLTAEWK-HVNE 119
Query: 604 DTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXTF 783
D+QERK+ LTAERV E+F+ I+DE+ ++GMDP+FARP+WMI T F
Sbjct: 120 DSQERKLTLTAERVHEIFKHISDEECHILGMDPKFARPDWMILTVIPVPPLNVRPTVIMF 179
Query: 784 GSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPT 963
GSAK DDLT+KL DIIK N +L RNE +GAAAH++ +++R+LQFHVAT+VDN +PGL
Sbjct: 180 GSAKGHDDLTYKLGDIIKANNELIRNEESGAAAHIIHENIRMLQFHVATMVDNDMPGLQR 239
Query: 964 ATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQN 1143
A QK GRP+KSIK RLKGKEGRIRGNLMGKRVDFSARTVIT DPNL ID VGVPR+IAQN
Sbjct: 240 AMQKSGRPVKSIKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 299
Query: 1144 LTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVE 1311
LTFPE+VTP N KL ELV RG++QYPGAK ENG R+DLRYHP+ DLHLQ GY+VE
Sbjct: 300 LTFPEMVTPLNHAKLTELVQRGNSQYPGAKYIIRENGERIDLRYHPKTTDLHLQFGYKVE 359
Query: 1312 RHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQ 1491
RH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS T+PYNADFDGDEMNLH+ Q
Sbjct: 360 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTTPYNADFDGDEMNLHVAQ 419
Query: 1492 SLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYL 1671
SLETRAE+E I + PRQ+ITPQAN+PVMGIVQDTLCAVR MTKRDVF++ MM LLMYL
Sbjct: 420 SLETRAELENIHITPRQIITPQANRPVMGIVQDTLCAVRKMTKRDVFLEKEQMMTLLMYL 479
Query: 1672 PTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTK 1851
PTWDGK+PQPAILKPKPLWTGKQ+F+LIIPG VN+++THSTHPD ED GPYKWISPGDTK
Sbjct: 480 PTWDGKLPQPAILKPKPLWTGKQLFTLIIPGKVNMMKTHSTHPDDEDDGPYKWISPGDTK 539
Query: 1852 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTI 2031
V++EHGEL+ GI+C KT+G SAG++LH++ LELG++I FY +IQTV+N WL+ EGH+I
Sbjct: 540 VMVEHGELIMGILCKKTLGASAGSILHIIFLELGHDICGKFYGNIQTVVNNWLLYEGHSI 599
Query: 2032 GIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILND 2211
GIGDTIAD TY IQ TI+KAK+DV+DVI KAHN++LEPTPGNTLRQTFEN+VN+ILND
Sbjct: 600 GIGDTIADPQTYNSIQTTIKKAKEDVIDVITKAHNNELEPTPGNTLRQTFENQVNRILND 659
Query: 2212 ARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTL 2391
ARD+TG SA+ SL+E+NN INISQVIACVGQQNVEGKRIPFGFR RTL
Sbjct: 660 ARDKTGGSAKNSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 719
Query: 2392 PHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 2571
PHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKA
Sbjct: 720 PHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKA 779
Query: 2572 MESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDN 2751
ME+ MV YDGTVRNS+ Q++QLRYGEDGL G VE Q++PT+K +N FE +R D ++
Sbjct: 780 MEACMVAYDGTVRNSVGQVIQLRYGEDGLAGELVEFQSLPTIKLSNRAFESKYRFDPSNE 839
Query: 2752 KFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLI 2931
+ LRK ++EDV + + + I+ +E EW L +DR LRK+FP G+ K+VLPCNLQR+I
Sbjct: 840 RQLRKTFTEDVTKSLLGDSEVITEIEKEWEALVKDREALRKVFPSGENKVVLPCNLQRMI 899
Query: 2932 WNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRS 3111
WNAQK F ++ R P +LSPL VI GVR+L K +IV+G D++SKQA NATLL L+RS
Sbjct: 900 WNAQKTFHINKRMPSDLSPLRVIQGVRDLLKNCVIVNGEDKLSKQANENATLLFQCLVRS 959
Query: 3112 TLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTF 3291
TLCTK + + +LN+EAF+WL+GEIE+RFQ A A PGEMVGA+AAQSLGEPATQMTLNTF
Sbjct: 960 TLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIAAQSLGEPATQMTLNTF 1019
Query: 3292 HYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLK 3471
H+AGVS+KNVTLGVPRLKEIINVS++ K PSLTVFLTG AA+D EKAK VLC+LEHTTLK
Sbjct: 1020 HFAGVSSKNVTLGVPRLKEIINVSRSPKAPSLTVFLTGTAARDAEKAKQVLCRLEHTTLK 1079
Query: 3472 KVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLT 3651
KVT NTAIYYDPD KNTVIAED+++V+++Y+MPD D SR SPWLLRIELDRKRM DKKLT
Sbjct: 1080 KVTANTAIYYDPDIKNTVIAEDQDFVTLYYDMPDVDTSRMSPWLLRIELDRKRMTDKKLT 1139
Query: 3652 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGE--AQEEQVDKMEDDVFLRC 3825
ME I+++I GFG D++ I+ DDNAEKLV R+RI D+ + ++EQ+DKMEDD+FLRC
Sbjct: 1140 MEQISEKITAGFGEDLNCIFNDDNAEKLVLRIRIMNSDESKFGEEDEQIDKMEDDMFLRC 1199
Query: 3826 IEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL 4005
IEANMLSD+TLQGI AISKVYM+ P TD+KKRIIIT G F+++A+W+LETDGT+L++VL
Sbjct: 1200 IEANMLSDMTLQGIEAISKVYMHLPQTDNKKRIIITDTGEFRAIAEWLLETDGTSLMKVL 1259
Query: 4006 SERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTA 4185
SER +DPVRT SNDICEIF VLGIEAVRK+IE+EM+ V+ F G YVNYRHLALLCDVMTA
Sbjct: 1260 SERDVDPVRTYSNDICEIFTVLGIEAVRKSIEKEMNAVLQFYGLYVNYRHLALLCDVMTA 1319
Query: 4186 KGHLMAITRHGINRQEVGALMR 4251
KG+LMAITRHGINRQ+ GALMR
Sbjct: 1320 KGYLMAITRHGINRQDTGALMR 1341
>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit
Length = 1337
Score = 1883 bits (4877), Expect = 0.0
Identities = 930/1343 (69%), Positives = 1091/1343 (80%), Gaps = 7/1343 (0%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
H+EL+KPVFH+ F TK +KILRCVC+YC +LLID + P+V +IL KT K+R +YD
Sbjct: 1 HIELSKPVFHVPFFTKIIKILRCVCYYCSKLLIDPNHPKVKDILNKTKNQMKRRQGFVYD 60
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVNE 603
LCK K+ C G V GCGR+QP RR +++ AEWK+ +N+
Sbjct: 61 LCKVKTSCGGGEIDKKDDDNDPDNIK-----VQVGCGRHQPKIRRNLLELTAEWKQ-IND 114
Query: 604 DTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXTF 783
D QE+K++LTAERVLE+F+ ITDE ++GMDP++ARP+W+I T F
Sbjct: 115 DNQEKKMILTAERVLEIFKAITDETCTILGMDPKYARPDWLIATMLPVPPLPVRPAVVMF 174
Query: 784 GSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPT 963
GSAKNQDDLTHKL+DIIK N QL+RNE NGAAAH+L +D ++LQFHVAT++DN +PGLP
Sbjct: 175 GSAKNQDDLTHKLADIIKINNQLKRNEMNGAAAHILAEDTKMLQFHVATMIDNEMPGLPR 234
Query: 964 ATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQN 1143
ATQK GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT DP L ID VGVPR+IAQN
Sbjct: 235 ATQKSGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPMLRIDQVGVPRSIAQN 294
Query: 1144 LTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVE 1311
LTFPEIVTPFN+++L ELV RG QYPGAK E G R+DLRYHP++ DLHLQ GYRVE
Sbjct: 295 LTFPEIVTPFNIERLTELVKRGANQYPGAKFILRETGDRIDLRYHPKSTDLHLQFGYRVE 354
Query: 1312 RHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQ 1491
RHM+D D ++FNRQPTLHKMSMM HRVKILPWSTFR+NLSVT+PYNADFDGDEMNLHL Q
Sbjct: 355 RHMQDNDYVIFNRQPTLHKMSMMCHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLAQ 414
Query: 1492 SLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYL 1671
SLETRAEI ++A V R +ITPQAN+PVMGIVQD+L AV MT+RD FI +M++LMYL
Sbjct: 415 SLETRAEISQLASVKRMIITPQANRPVMGIVQDSLTAVNKMTRRDTFITKDEIMNILMYL 474
Query: 1672 PTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTK 1851
P W GK+PQPAILKP+ LWTGKQ+FS+IIPG +NV+RTHSTHPD ED GP+KWISPGDTK
Sbjct: 475 PGWAGKLPQPAILKPRALWTGKQLFSIIIPGRINVIRTHSTHPDDEDRGPHKWISPGDTK 534
Query: 1852 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTI 2031
V++E G+LLSGI+C K++G S+G+L H++ ELG + A+FY++IQ V N WL+ GHTI
Sbjct: 535 VLVEDGKLLSGILCKKSLGASSGSLQHIIHHELGSDATADFYAYIQMVTNHWLLVTGHTI 594
Query: 2032 GIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILND 2211
GI DTIAD TY DIQ I+KAK DVV+VIEKAHND+LEP PGNTLRQTFEN+VN+ILND
Sbjct: 595 GIADTIADAKTYSDIQTAIKKAKSDVVEVIEKAHNDELEPMPGNTLRQTFENQVNRILND 654
Query: 2212 ARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTL 2391
ARD+TGS AQKSLSEFNNF INISQVIACVGQQNVEGKRIPFGFR RTL
Sbjct: 655 ARDKTGSLAQKSLSEFNNFKSMVVAGSKGNKINISQVIACVGQQNVEGKRIPFGFRQRTL 714
Query: 2392 PHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 2571
PHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA
Sbjct: 715 PHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 774
Query: 2572 MESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDN 2751
MESVMV YDGTVRN + Q++QLRYGEDGL G WVE QN+P++KP+N FE F+ D T+
Sbjct: 775 MESVMVKYDGTVRNQIEQLIQLRYGEDGLAGEWVEFQNLPSLKPSNKAFEAGFKFDPTNE 834
Query: 2752 KFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLI 2931
K L+ ED+++ + + I+ VESE+ QL EDR +R+IFP GD+KIVLPCNLQRLI
Sbjct: 835 KHLKNYLDEDILKSLNGDANVIAEVESEYKQLLEDRTAIRQIFPSGDSKIVLPCNLQRLI 894
Query: 2932 WNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRS 3111
WNAQKIF++ RKP NL P+ +I VRELSKK +IV G D +SK A NATLLMNIL+RS
Sbjct: 895 WNAQKIFRIHTRKPSNLHPVKIIEDVRELSKKFMIVKGEDRLSKTANTNATLLMNILVRS 954
Query: 3112 TLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTF 3291
TLC+K + + L++EAF+WL+GEIES+F QA QPGEMVGALAAQSLGEPATQMTLNTF
Sbjct: 955 TLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVGALAAQSLGEPATQMTLNTF 1014
Query: 3292 HYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLK 3471
HYAGVSAKNVTLGVPRLKEIINVSK + PSLTV L G A+D EKAKDVLC+LEHTTL+
Sbjct: 1015 HYAGVSAKNVTLGVPRLKEIINVSKKPRAPSLTVILIGQPARDAEKAKDVLCQLEHTTLR 1074
Query: 3472 KVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLT 3651
KVT NTAIYYDPDP +T+I ED+EWV I+Y+MPD D+SR SPWLLR+ELDRKRM DKKLT
Sbjct: 1075 KVTENTAIYYDPDPMHTLIEEDQEWVYIYYDMPDVDISRLSPWLLRVELDRKRMTDKKLT 1134
Query: 3652 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQ---EEQVDKMEDDVFLR 3822
ME I+++I GFG+D++ I+ DDNAEKLV R+R+ G+ EEQ+DKM DD FL+
Sbjct: 1135 MEQISEKITAGFGDDLNCIFNDDNAEKLVLRVRLMSNQDGKQDQDTEEQIDKMPDDTFLK 1194
Query: 3823 CIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRV 4002
IE+NML+D+TLQGI +I+KVYM QP TDDKKRIII +G FK++ DWILETDGTAL RV
Sbjct: 1195 HIESNMLTDMTLQGITSIAKVYMQQPTTDDKKRIIIDEKGEFKALQDWILETDGTALRRV 1254
Query: 4003 LSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMT 4182
LS +DPV+T SNDI E+FEVLGIEAVRK+IEREM+NVISFDGSYVNYRHLALLCDVMT
Sbjct: 1255 LSVENVDPVKTVSNDIVEVFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVMT 1314
Query: 4183 AKGHLMAITRHGINRQEVGALMR 4251
AKGHLMAITRHGINRQE G L R
Sbjct: 1315 AKGHLMAITRHGINRQETGVLAR 1337
>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 1745
Score = 1865 bits (4832), Expect = 0.0
Identities = 951/1480 (64%), Positives = 1136/1480 (76%), Gaps = 124/1480 (8%)
Frame = +1
Query: 523 GGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDP 702
GGCGRYQP RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ +++GMDP
Sbjct: 3 GGCGRYQPRIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDP 61
Query: 703 QFARPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAA 882
+FARPEWMI T GSA+NQDDLTHKL+DI+K N QL+RNE +GAAA
Sbjct: 62 KFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAA 121
Query: 883 HVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVD 1062
HV+ +DV+LLQFHVAT+VDN +PGLP A QK GRPLKSIKQRLKGKEGR+RGNLMGKRVD
Sbjct: 122 HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVD 181
Query: 1063 FSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK--- 1233
FSARTVIT DPNL ID VGVPR+IA N+TFPEIVTPFN+D+LQELV RG++QYPGAK
Sbjct: 182 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 241
Query: 1234 -ENGARVDLRYHPRAADLHLQPGYRVER---HMKDGDIIVFNRQPTLHKMSMMGHRVKIL 1401
+NG R+DLR+HP+ +DLHLQ GY+ HM DGDI++FNRQPTLHKMSMMGHRV+IL
Sbjct: 242 RDNGDRIDLRFHPKPSDLHLQIGYKASSKALHMCDGDIVIFNRQPTLHKMSMMGHRVRIL 301
Query: 1402 PWSTFRMNL--------------------------------------------SVTSPYN 1449
PWSTFR+NL SVT+PYN
Sbjct: 302 PWSTFRLNLRYRLKQGRADAKAQGKPLIEFPVCRINALAQSSRYCMYFPDFCFSVTTPYN 361
Query: 1450 ADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 1629
ADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR TKRDV
Sbjct: 362 ADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDV 421
Query: 1630 FIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSE 1809
F+D +M+LLM+L TWDGK+PQPAILKP+ LWTGKQ+FSLIIPG++NV+RTHSTHPD E
Sbjct: 422 FLDRGEVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRTHSTHPDDE 481
Query: 1810 DSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQ 1989
DSGPYK ISPGDTKVI+E+GEL+ GI+C K++G SAG+L+H+ LE+G++I FYS+IQ
Sbjct: 482 DSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQ 541
Query: 1990 TVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTL 2169
TV+N WL+ EGH+IGIGD+IAD TYLDIQNTI+KAKQDV++VIEKAHN++LEPTPGNTL
Sbjct: 542 TVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTL 601
Query: 2170 RQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNV 2349
RQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF INISQVIA VGQQNV
Sbjct: 602 RQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNV 661
Query: 2350 EGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 2529
EGKRIPFGF+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVK
Sbjct: 662 EGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 721
Query: 2530 TAETG------YIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMP 2691
TAETG YIQRRLIK+MESVMV YDGTVRNS+ Q+VQLRYGEDGL G VE QN+
Sbjct: 722 TAETGKFVCRRYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNLA 781
Query: 2692 TMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLR 2871
T+KP++ FE+ F+ D T+ + LR+ EDVV+++ + S +E E+ +++EDR +LR
Sbjct: 782 TLKPSHRAFEKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR 841
Query: 2872 KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVI----------------- 3000
IFP GD+K+VLPCNL R+IWNAQKIF+++ R P +LSPL V+
Sbjct: 842 AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEGILSSVSLNEICCSPP 901
Query: 3001 ------------------SGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTK 3126
SG ELSKKL+IV+G+D +S+QAQ NATLL NI LRSTLC+K
Sbjct: 902 FTLNISIADIQFEHVFGLSGTHELSKKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSK 961
Query: 3127 NMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGV 3306
M + +L++EAFDWLLGEIE++F Q+IA PGEMVGALAAQSLGEPATQMTLNTFHYAGV
Sbjct: 962 RMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGV 1021
Query: 3307 SAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCN 3486
SAKNVTLGVPRLKE+IN+SK KTPSLTVFL G AA+D E+AKD+LC+LEHTTL+KVT N
Sbjct: 1022 SAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTAN 1081
Query: 3487 TAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIA 3666
TAIYYDP+P+NTV+ ED+EWV+++YEMPD D++R SPWLLRIELDRK M D +
Sbjct: 1082 TAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDSQ------- 1134
Query: 3667 DRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGED--KGEAQEEQVDKMEDDVFLRCIEANM 3840
TD A+ + RI D K + EE VDKM+DDVFLRCIE+NM
Sbjct: 1135 ---------------TDHGADCREDQCRIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNM 1179
Query: 3841 LSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQI 4020
L+D+TLQGI ISKVYM+ P TD+KK+IIIT +G FK++ +WILETDG +L+RVLSE+ +
Sbjct: 1180 LTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDV 1239
Query: 4021 DPVRTTSNDICEI--------------------------FEVLGIEAVRKAIEREMDNVI 4122
DPVRTTSNDI EI F+VLGIEAVRKA+ERE+ +VI
Sbjct: 1240 DPVRTTSNDIVEIFTVIQSLSCLIGLRELFDGDRVPSSGFQVLGIEAVRKALERELYHVI 1299
Query: 4123 SFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHA 4302
SFDGSYVNYRHLALLCD MT +GHLMAITRHGINRQ+ G LM+CSFEETVD+LMEA+ H
Sbjct: 1300 SFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHG 1359
Query: 4303 EEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV--VMGGGFYGSFAGS- 4473
E DP+KGVSENIMLGQLA GTGCFDL+LD EKCKYGMEIP N+ + G G F GS
Sbjct: 1360 ECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGSTGMFFGSA 1419
Query: 4474 PSNRE-FSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGF 4590
PS SPA +PWN+G TP Y AWSP+ G P + F
Sbjct: 1420 PSPMSGMSPAMTPWNTGATPAY--GAWSPSVGECLPRSFF 1457
>gi|15233338|ref|NP_195305.1| DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) [Arabidopsis thaliana]
gi|12644149|sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II
largest subunit
gi|25288404|pir||G85422 hypothetical protein AT4g35800 [imported] -
Arabidopsis thaliana
gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6)
II largest chain [Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6)
II largest chain [Arabidopsis thaliana]
Length = 1840
Score = 1634 bits (4230), Expect = 0.0
Identities = 857/1629 (52%), Positives = 1124/1629 (68%), Gaps = 64/1629 (3%)
Frame = +1
Query: 52 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCP 231
VQFGIL P+EI++MSV HVE E E GKPK+GGL D R G IDR+ +C TC N+ +CP
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETCMANMAECP 77
Query: 232 GHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLT 411
GHFG+LELAKP++H+GF+ L I+RCVCF C ++L D+ + K N K RL
Sbjct: 78 GHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRSLFRQAMKI-KNPKNRLK 136
Query: 412 MIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK- 588
I D CK K+ C+G GGCG QP G+ + AE+K
Sbjct: 137 KILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSR---GGCGAQQPKLTIEGMKMIAEYKI 193
Query: 589 ---KNVNEDT----QERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXX 747
KN D ERK L A+RVL V ++I+D D ++G +P+FARP+WMI
Sbjct: 194 QRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARPDWMILEVLPI 253
Query: 748 XXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVA 927
+++++DDLTH+L+ II+ N+ L+R E NGA AH++++ +LLQFH+A
Sbjct: 254 PPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIISEFTQLLQFHIA 313
Query: 928 TLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPI 1107
T DN +PG P ATQK GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP + I
Sbjct: 314 TYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 373
Query: 1108 DTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYH 1266
D +GVP +IA NLT+PE VTP+N+++L+ELV+ G PG +++G R+DLRY
Sbjct: 374 DELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYL 433
Query: 1267 PRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPY 1446
+++D HL+ GY+VERH++DGD ++FNRQP+LHKMS+MGHR++I+P+STFR+NLSVTSPY
Sbjct: 434 KKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPY 493
Query: 1447 NADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRD 1626
NADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQAN+PVMGIVQDTL R +TKRD
Sbjct: 494 NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRD 553
Query: 1627 VFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDS 1806
FI+ M+ LM+ +DGKVP PAILKP+PLWTGKQVF+LIIP +N+LR + H D+
Sbjct: 554 TFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADT 613
Query: 1807 EDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHI 1986
E +I+PGDT+V IE GELL+G +C KT+G S G+L+HV+ E+G + A F H
Sbjct: 614 ETG----FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHT 669
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
Q ++N WL++ G TIGIGDTIAD +T I TI AK V D+I + +L+P PG T
Sbjct: 670 QWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRT 729
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
+R TFEN+VNQ+LN ARD GSSAQKSL+E NN INISQ+ ACVGQQN
Sbjct: 730 MRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQN 789
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
VEGKRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAV
Sbjct: 790 VEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 849
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPN 2706
KT+ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K
Sbjct: 850 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMK 909
Query: 2707 NAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDR-RLLRKIFP 2883
+ F+R F+ ++ D + S++ + +++ + + ++E+S+LE DR +L +I
Sbjct: 910 KSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIAT 969
Query: 2884 RGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISK 3063
GD+ LP N++R IWNAQK FK+DLRK ++ P+ ++ V +L ++L++V G+D +S
Sbjct: 970 NGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSV 1029
Query: 3064 QAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALA 3243
+AQ NATL NILLRSTL +K + + KL+ EAF+W++GEIESRF Q++ PGEM+G +A
Sbjct: 1030 EAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1089
Query: 3244 AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDP 3423
AQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+V+LT A+K
Sbjct: 1090 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSK 1149
Query: 3424 EKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLS--RTSP 3597
E AK V C LE+TTL+ VT T ++YDPDP +T+I ED E+V +YEMPD D+S + SP
Sbjct: 1150 EGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISP 1209
Query: 3598 WLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGED--KG 3771
WLLRIEL+R+ MVDKKL+M IA++I+ F +D+ I+ DDNA+KL+ R+RI ++ KG
Sbjct: 1210 WLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKG 1269
Query: 3772 EAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFK 3951
E Q+E EDDVFL+ IE+NML+++ L+GIP I+KV++ Q ++ EGGFK
Sbjct: 1270 ELQDESA---EDDVFLKKIESNMLTEMALRGIPDINKVFIKQ-----VRKSRFDEEGGFK 1321
Query: 3952 SVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFD 4131
+ +W+L+T+G LL V+ +DP RTTSN + EI EVLGIEAVR+A+ E+ VISFD
Sbjct: 1322 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1381
Query: 4132 GSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEED 4311
GSYVNYRHLA+LCD MT +GHLMAITRHGINR + G LMRCSFEETVDIL++AA +AE D
Sbjct: 1382 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1441
Query: 4312 PVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEI----------------------- 4422
++GV+ENIMLGQLA GTG +L L+ E K +E+
Sbjct: 1442 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1501
Query: 4423 --------------------PQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAG 4542
P + + G A SPS+ SP +SP + G +PT G
Sbjct: 1502 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSS---SPGYSPSSPGYSPTSPG 1558
Query: 4543 AAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPG 4719
+SPT+ G SP G+SP T +SP G+SP SP A SP +PSY SP
Sbjct: 1559 --YSPTSPGYSPTSPGYSPTSPTYSPSSP----GYSPTSP-----AYSPTSPSYSPTSPS 1607
Query: 4720 VYSPSSPQF 4746
YSP+SP +
Sbjct: 1608 -YSPTSPSY 1615
Score = 52.4 bits (124), Expect = 1e-04
Identities = 36/93 (38%), Positives = 49/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SPA+SP + +PT A+SPT+ SP +SP + SP +S
Sbjct: 1633 SPSYSPTSPAYSPTSPAYSPT--SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1686
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SPG YSP+SP +
Sbjct: 1687 PTSP-----SYSPTSPAYSPTSPG-YSPTSPSY 1713
Score = 51.2 bits (121), Expect = 3e-04
Identities = 36/104 (34%), Positives = 50/104 (47%), Gaps = 14/104 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTY------------AGAAWSPTTGGMSPGAGFSPAGNTDG 4614
SPS SPA+SP + G +PT +++P + SP +SP+
Sbjct: 1689 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLS 1748
Query: 4615 GASPFN--EGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSP 4740
ASP++ +SP SP + SP +PSY SP YSPSSP
Sbjct: 1749 PASPYSPTSPNYSPTSP-----SYSPTSPSYSPSSP-TYSPSSP 1786
Score = 49.7 bits (117), Expect = 8e-04
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPAYSPTSP----AYS 1651
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP A SP +PSY SP YSP+SP +
Sbjct: 1652 PTSP-----AYSPTSPSYSPTSPS-YSPTSPSY 1678
Score = 48.9 bits (115), Expect = 0.001
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 4408 YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA- 4584
YG P + S A SPSN SPA SP+ S +P Y SPT+ SP +
Sbjct: 1720 YGPTSPSYNPQSAKYSPSIAYSPSNARLSPA-SPY-SPTSPNY-----SPTSPSYSPTSP 1772
Query: 4585 GFSPAGNTDGGASPFNEGGWSPASPG-DPLGALSPRTPSYGGMSPGVYSP 4731
+SP+ T +SP++ G ASP P SP P Y S G Y+P
Sbjct: 1773 SYSPSSPTYSPSSPYSSG----ASPDYSPSAGYSPTLPGYSPSSTGQYTP 1818
Score = 48.5 bits (114), Expect = 0.002
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1605 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPAYSPTSPAYSPTSP----AYS 1658
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1659 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1685
>gi|7428072|pir||JDMU1 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - Arabidopsis thaliana
Length = 1834
Score = 1627 bits (4214), Expect = 0.0
Identities = 855/1624 (52%), Positives = 1123/1624 (68%), Gaps = 59/1624 (3%)
Frame = +1
Query: 52 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCP 231
VQFGIL P+EI++MSV HVE E E GKPK+GGL D R G IDR+ +C TC N+ +CP
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETCMANMAECP 77
Query: 232 GHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLT 411
GHFG+LELAKP++H+GF+ L I+RCVCF C ++L D+ + K N K RL
Sbjct: 78 GHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRSLFRQAMKI-KNPKNRLK 136
Query: 412 MIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK- 588
I D CK K+ C+G GGCG QP G+ + AE+K
Sbjct: 137 KILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSR---GGCGAQQPKLTIEGMKMIAEYKI 193
Query: 589 ---KNVNEDT----QERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXX 747
KN D ERK L A+RVL V ++I+D D ++G +P+FARP+WMI
Sbjct: 194 QRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARPDWMILEVLPI 253
Query: 748 XXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVA 927
+++++DDLTH+L+ II+ N+ L+R E NGA AH++++ +LLQFH+A
Sbjct: 254 PPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIISEFTQLLQFHIA 313
Query: 928 TLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPI 1107
T DN +PG P ATQK GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP + I
Sbjct: 314 TYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 373
Query: 1108 DTVGVPRTIAQNLTFPEIVTPFNVDKLQELV--NRGDTQYPGAKENGARVDLRYHPRAAD 1281
D +GVP +IA NLT+PE VTP+N+++L LV + +T+Y +++G R+DLRY +++D
Sbjct: 374 DELGVPWSIALNLTYPETVTPYNIERLVRLVFISFSETKYI-IRDDGQRLDLRYLKKSSD 432
Query: 1282 LHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFD 1461
HL+ GY+VERH++DGD ++FNRQP+LHKMS+MGHR++I+P+STFR+NLSVTSPYNADFD
Sbjct: 433 QHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFD 492
Query: 1462 GDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDW 1641
GDEMN+H+PQS ETRAE+ E+ MVP+ +++PQAN+PVMGIVQDTL R +TKRD FI+
Sbjct: 493 GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEK 552
Query: 1642 PFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGP 1821
M+ LM+ +DGKVP PAILKP+PLWTGKQVF+LIIP +N+LR + H D+E
Sbjct: 553 DVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG-- 610
Query: 1822 YKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVIN 2001
+I+PGDT+V IE GELL+G +C KT+G S G+L+HV+ E+G + A F H Q ++N
Sbjct: 611 --FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVN 668
Query: 2002 AWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTF 2181
WL++ G TIGIGDTIAD +T I TI AK V D+I + +L+P PG T+R TF
Sbjct: 669 YWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTF 728
Query: 2182 ENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKR 2361
EN+VNQ+LN ARD GSSAQKSL+E NN INISQ+ ACVGQQNVEGKR
Sbjct: 729 ENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 788
Query: 2362 IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 2541
IPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ET
Sbjct: 789 IPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 848
Query: 2542 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 2721
GYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K + F+
Sbjct: 849 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 908
Query: 2722 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDR-RLLRKIFPRGDAK 2898
R F+ ++ D + S++ + +++ + + ++E+S+LE DR +L +I GD+
Sbjct: 909 RTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDST 968
Query: 2899 IVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYN 3078
LP N++R IWNAQK FK+DLRK ++ P+ ++ V +L ++L++V G+D +S +AQ N
Sbjct: 969 WPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKN 1028
Query: 3079 ATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLG 3258
ATL NILLRSTL +K + + KL+ EAF+W++GEIESRF Q++ PGEM+G +AAQS+G
Sbjct: 1029 ATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1088
Query: 3259 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKD 3438
EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+V+LT A+K E AK
Sbjct: 1089 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKT 1148
Query: 3439 VLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLS--RTSPWLLRI 3612
V C LE+TTL+ VT T ++YDPDP +T+I ED E+V +YEMPD D+S + SPWLLRI
Sbjct: 1149 VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRI 1208
Query: 3613 ELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGED--KGEAQEE 3786
EL+R+ MVDKKL+M IA++I+ F +D+ I+ DDNA+KL+ R+RI ++ KGE Q+E
Sbjct: 1209 ELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDE 1268
Query: 3787 QVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADW 3966
EDDVFL+ IE+NML+++ L+GIP I+KV++ Q ++ EGGFK+ +W
Sbjct: 1269 SA---EDDVFLKKIESNMLTEMALRGIPDINKVFIKQ-----VRKSRFDEEGGFKTSEEW 1320
Query: 3967 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 4146
+L+T+G LL V+ +DP RTTSN + EI EVLGIEAVR+A+ E+ VISFDGSYVN
Sbjct: 1321 MLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1380
Query: 4147 YRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGV 4326
YRHLA+LCD MT +GHLMAITRHGINR + G LMRCSFEETVDIL++AA +AE D ++GV
Sbjct: 1381 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGV 1440
Query: 4327 SENIMLGQLARCGTGCFDLVLDVEKCKYGMEI---------------------------- 4422
+ENIMLGQLA GTG +L L+ E K +E+
Sbjct: 1441 TENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGTPYHEG 1500
Query: 4423 ---------------PQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSP 4557
P + + G A SPS+ SP +SP + G +PT G +SP
Sbjct: 1501 MMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSS---SPGYSPSSPGYSPTSPG--YSP 1555
Query: 4558 TTGGMSP-GAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPS 4734
T+ G SP G+SP T +SP G+SP SP A SP +PSY SP YSP+
Sbjct: 1556 TSPGYSPTSPGYSPTSPTYSPSSP----GYSPTSP-----AYSPTSPSYSPTSPS-YSPT 1605
Query: 4735 SPQF 4746
SP +
Sbjct: 1606 SPSY 1609
Score = 52.4 bits (124), Expect = 1e-04
Identities = 36/93 (38%), Positives = 49/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SPA+SP + +PT A+SPT+ SP +SP + SP +S
Sbjct: 1627 SPSYSPTSPAYSPTSPAYSPT--SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1680
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SPG YSP+SP +
Sbjct: 1681 PTSP-----SYSPTSPAYSPTSPG-YSPTSPSY 1707
Score = 51.2 bits (121), Expect = 3e-04
Identities = 36/104 (34%), Positives = 50/104 (47%), Gaps = 14/104 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTY------------AGAAWSPTTGGMSPGAGFSPAGNTDG 4614
SPS SPA+SP + G +PT +++P + SP +SP+
Sbjct: 1683 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLS 1742
Query: 4615 GASPFN--EGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSP 4740
ASP++ +SP SP + SP +PSY SP YSPSSP
Sbjct: 1743 PASPYSPTSPNYSPTSP-----SYSPTSPSYSPSSP-TYSPSSP 1780
Score = 49.7 bits (117), Expect = 8e-04
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1592 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPAYSPTSP----AYS 1645
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP A SP +PSY SP YSP+SP +
Sbjct: 1646 PTSP-----AYSPTSPSYSPTSPS-YSPTSPSY 1672
Score = 48.9 bits (115), Expect = 0.001
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 4408 YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA- 4584
YG P + S A SPSN SPA SP+ S +P Y SPT+ SP +
Sbjct: 1714 YGPTSPSYNPQSAKYSPSIAYSPSNARLSPA-SPY-SPTSPNY-----SPTSPSYSPTSP 1766
Query: 4585 GFSPAGNTDGGASPFNEGGWSPASPG-DPLGALSPRTPSYGGMSPGVYSP 4731
+SP+ T +SP++ G ASP P SP P Y S G Y+P
Sbjct: 1767 SYSPSSPTYSPSSPYSSG----ASPDYSPSAGYSPTLPGYSPSSTGQYTP 1812
Score = 48.5 bits (114), Expect = 0.002
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1599 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPAYSPTSPAYSPTSP----AYS 1652
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1653 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1679
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 1622 bits (4201), Expect = 0.0
Identities = 853/1624 (52%), Positives = 1121/1624 (68%), Gaps = 59/1624 (3%)
Frame = +1
Query: 52 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCP 231
VQFGIL P+EI++MSV HVE E E GKPK+GGL D R G IDR+ +C TC N+ +CP
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETCMANMAECP 77
Query: 232 GHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLT 411
GHFG+LELAKP++H+GF+ L I+RCVCF C ++L D+ + K N K RL
Sbjct: 78 GHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRSLFRQAMKI-KNPKNRLK 136
Query: 412 MIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK- 588
I D CK K+ C+G GGCG QP G+ + AE+K
Sbjct: 137 KILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSR---GGCGAQQPKLTIEGMKMIAEYKI 193
Query: 589 ---KNVNEDT----QERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXX 747
KN D ERK L A+RVL V ++I+D D ++G +P+FARP+WMI
Sbjct: 194 QRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARPDWMILEVLPI 253
Query: 748 XXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVA 927
+++++DDLTH+L+ II+ N+ L+R E NGA AH++++ +LLQFH+A
Sbjct: 254 PPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIISEFTQLLQFHIA 313
Query: 928 TLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPI 1107
T DN +PG P ATQK GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP + I
Sbjct: 314 TYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 373
Query: 1108 DTVGVPRTIAQNLTFPEIVTPFNVDKLQELV--NRGDTQYPGAKENGARVDLRYHPRAAD 1281
D +GVP +IA NLT+PE VTP+N+++L LV + +T+Y +++G R DLRY +++D
Sbjct: 374 DELGVPWSIALNLTYPETVTPYNIERLVRLVFISFSETKYI-IRDDGQRSDLRYLKKSSD 432
Query: 1282 LHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFD 1461
HL+ GY+VERH++DGD ++FNRQP+LHKMS+MGHR++I+P+STFR+NLSVTSPYNADFD
Sbjct: 433 QHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFD 492
Query: 1462 GDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDW 1641
GDEMN+H+PQS ETRAE+ E+ MVP+ +++PQAN+PVMGIVQDTL R +TKRD FI+
Sbjct: 493 GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEK 552
Query: 1642 PFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGP 1821
M+ LM+ +DGKVP PAILKP+PLWTGKQVF+LIIP +N+LR + H D+E
Sbjct: 553 DVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTETG-- 610
Query: 1822 YKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVIN 2001
+I+PGDT+V IE GELL+G +C KT+G S G+L+HV+ E+G + A F H Q ++N
Sbjct: 611 --FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVN 668
Query: 2002 AWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTF 2181
WL++ G TIGIGDTIAD +T I TI AK V D+I + +L+P PG T+R TF
Sbjct: 669 YWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTF 728
Query: 2182 ENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKR 2361
EN+V+Q+LN ARD GSSAQKSL+E NN INISQ+ ACVGQQNVEGKR
Sbjct: 729 ENRVDQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 788
Query: 2362 IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 2541
IPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ET
Sbjct: 789 IPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 848
Query: 2542 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 2721
GYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K + F+
Sbjct: 849 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFD 908
Query: 2722 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDR-RLLRKIFPRGDAK 2898
R F+ ++ D + S++ + +++ + + ++E+S+LE DR +L +I GD+
Sbjct: 909 RTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDST 968
Query: 2899 IVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYN 3078
LP N++R IWNAQK FK+DLRK ++ P+ ++ V +L ++L++V G+D +S +AQ N
Sbjct: 969 WPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKN 1028
Query: 3079 ATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLG 3258
ATL NILLRSTL +K + + KL+ E F+W++GEIESRF Q++ PGEM+G +AAQS+G
Sbjct: 1029 ATLFFNILLRSTLASKRVLEEYKLSRERFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1088
Query: 3259 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKD 3438
EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+V+LT A+K E AK
Sbjct: 1089 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKT 1148
Query: 3439 VLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLS--RTSPWLLRI 3612
V C LE+TTL+ VT T ++YDPDP +T+I ED E+V +YEMPD D+S + SPWLLRI
Sbjct: 1149 VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRI 1208
Query: 3613 ELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGED--KGEAQEE 3786
EL+R+ MVDKKL+M IA++I+ F +D+ I+ DDNA+KL+ R+RI ++ KGE Q+E
Sbjct: 1209 ELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDE 1268
Query: 3787 QVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADW 3966
EDDVFL+ IE+NML+++ L+GIP I+KV++ Q ++ EGGFK+ +W
Sbjct: 1269 SA---EDDVFLKKIESNMLTEMALRGIPDINKVFIKQ-----VRKSRFDEEGGFKTSEEW 1320
Query: 3967 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 4146
+L+T+G LL V+ +DP RTTSN + EI EVLGIEAVR+A+ E+ VISFDGSYVN
Sbjct: 1321 MLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1380
Query: 4147 YRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGV 4326
YRHLA+LCD MT +GHLMAITRHGINR + G LMRCSFEETVDIL++AA +AE D ++GV
Sbjct: 1381 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGV 1440
Query: 4327 SENIMLGQLARCGTGCFDLVLDVEKCKYGMEI---------------------------- 4422
+ENIMLGQLA GTG +L L+ E K +E+
Sbjct: 1441 TENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGTPYHEG 1500
Query: 4423 ---------------PQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSP 4557
P + + G A SPS+ SP +SP + G +PT G +SP
Sbjct: 1501 MMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSS---SPGYSPSSPGYSPTSPG--YSP 1555
Query: 4558 TTGGMSP-GAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPS 4734
T+ G SP G+SP T +SP G+SP SP A SP +PSY SP YSP+
Sbjct: 1556 TSPGYSPTSPGYSPTSPTYSPSSP----GYSPTSP-----AYSPTSPSYSPTSPS-YSPT 1605
Query: 4735 SPQF 4746
SP +
Sbjct: 1606 SPSY 1609
Score = 52.4 bits (124), Expect = 1e-04
Identities = 36/93 (38%), Positives = 49/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SPA+SP + +PT A+SPT+ SP +SP + SP +S
Sbjct: 1627 SPSYSPTSPAYSPTSPAYSPT--SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1680
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SPG YSP+SP +
Sbjct: 1681 PTSP-----SYSPTSPAYSPTSPG-YSPTSPSY 1707
Score = 49.7 bits (117), Expect = 8e-04
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1592 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPAYSPTSP----AYS 1645
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP A SP +PSY SP YSP+SP +
Sbjct: 1646 PTSP-----AYSPTSPSYSPTSPS-YSPTSPSY 1672
Score = 49.3 bits (116), Expect = 0.001
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPF------ 4629
SPS SP++SP + +PT G +SPT+ SP +SP + G SP
Sbjct: 1676 SPSYSPTSPSYSPTSPAYSPTSPG--YSPTSPSYSPTSPSYSPTSPSYGPTSPSYNPQSA 1733
Query: 4630 ----------NEGGWSPASPGDPLGA-LSPRTPSYGGMSPGVYSPSSPQF 4746
+ SPASP P SP +PSY SP YSPSSP +
Sbjct: 1734 KYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPS-YSPSSPTY 1782
Score = 48.9 bits (115), Expect = 0.001
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 4408 YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA- 4584
YG P + S A SPSN SPA SP+ S +P Y SPT+ SP +
Sbjct: 1721 YGPTSPSYNPQSAKYSPSIAYSPSNARLSPA-SPY-SPTSPNY-----SPTSPSYSPTSP 1773
Query: 4585 GFSPAGNTDGGASPFNEGGWSPASPG-DPLGALSPRTPSYGGMSPGVYSP 4731
+SP+ T +SP++ G ASP P SP P Y S G Y+P
Sbjct: 1774 SYSPSSPTYSPSSPYSSG----ASPDYSPSAGYSPTLPGYSPSSTGQYTP 1819
Score = 45.8 bits (107), Expect = 0.012
Identities = 33/90 (36%), Positives = 48/90 (52%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPS SP+++P ++ +P+ A +SP+ +SP + +SP SP +SP
Sbjct: 1718 SPSYGPTSPSYNPQSAKYSPSIA---YSPSNARLSPASPYSP-------TSP----NYSP 1763
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSP 4740
SP + SP +PSY SP YSPSSP
Sbjct: 1764 TSP-----SYSPTSPSYSPSSP-TYSPSSP 1787
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis
thaliana]
Length = 1860
Score = 1614 bits (4180), Expect = 0.0
Identities = 854/1657 (51%), Positives = 1124/1657 (67%), Gaps = 92/1657 (5%)
Frame = +1
Query: 52 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCP 231
VQFGIL P+EI++MSV HVE E E GKPK+GGL D R G IDR+ +C TC N+ +CP
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETCMANMAECP 77
Query: 232 GHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLT 411
GHFG+LELAKP++H+GF+ L I+RCVCF C ++L D++ ++I N K RL
Sbjct: 78 GHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEA----MKI-----KNPKNRLK 128
Query: 412 MIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKK 591
I D CK K+ C+G GGCG QP G+ + AE+K
Sbjct: 129 KILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSR---GGCGAQQPKLTIEGMKMIAEYKN 185
Query: 592 NVNEDTQ--------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXX 747
+ E+ + ERK L A+RVL V ++I+D D ++G +P+FARP+WMI
Sbjct: 186 SKEENDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARPDWMILEVLPI 245
Query: 748 XXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVA 927
+++++DDLTH+L+ II+ N+ L+R E NGA H+++ +LLQFH+A
Sbjct: 246 PPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPRHIISRFTQLLQFHIA 305
Query: 928 TLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPI 1107
T DN +PG P ATQK GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP + I
Sbjct: 306 TYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 365
Query: 1108 DTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYH 1266
D +GVP +IA NLT+PE VTP+N+++L+ELV+ G PG +++G R+DLRY
Sbjct: 366 DELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYL 425
Query: 1267 PRAADLHLQPGYR----------------------------VERHMKDGDIIVFNRQPTL 1362
+++D HL+ GYR VERH++DGD ++FNRQP+L
Sbjct: 426 KKSSDQHLELGYRYVLLSYSIHSTHKRLFLEVVIFMLSWSQVERHLQDGDFVLFNRQPSL 485
Query: 1363 HKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQ 1542
HKMS+MGHR++I+P+STFR+NLSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+
Sbjct: 486 HKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC 545
Query: 1543 LITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKP 1722
+++PQAN+PVMGIVQDTL R +TKRD FI+ M+ LM+ +DGKVP PAILKP+P
Sbjct: 546 IVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRP 605
Query: 1723 LWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKT 1902
LWTGKQVF+LIIP +N+LR + H D+E +I+PGDT+V IE GELL+G +C KT
Sbjct: 606 LWTGKQVFNLIIPKQINLLRYSAWHADTETG----FITPGDTQVRIERGELLAGTLCKKT 661
Query: 1903 VGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQN 2082
+G S G+L+HV+ E+G + A F H Q ++N WL++ G TIGIGDTIAD +T I
Sbjct: 662 LGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINE 721
Query: 2083 TIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFN 2262
TI AK V D+I + +L+P PG T+R TFEN+VNQ+LN ARD GSSAQKSL+E N
Sbjct: 722 TISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETN 781
Query: 2263 NFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVE 2442
N INISQ+ ACVGQQNVEGKRIPFGF RTLPHF KDDYGPES+GFVE
Sbjct: 782 NLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVE 841
Query: 2443 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLA 2622
NSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL
Sbjct: 842 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLG 901
Query: 2623 QMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQE 2802
++Q YGEDG+D +W+E+Q + ++K + F+R F+ ++ D + S++ + +++
Sbjct: 902 DVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKG 961
Query: 2803 SEDGISLVESEWSQLEEDR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVN 2979
+ + ++E+S+LE DR +L +I GD+ LP N++R IWNAQK FK+DLRK +
Sbjct: 962 IRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISD 1021
Query: 2980 LSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSE 3159
+ P+ ++ V +L ++L++V G+D +S +AQ NATL NILLRSTL +K + + KL+ E
Sbjct: 1022 MHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSRE 1081
Query: 3160 AFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR 3339
AF+W++GEIESRF Q++ PGEM+G + AQS+GEPATQMTLNTFHYAGVSAKNVTLGVPR
Sbjct: 1082 AFEWVIGEIESRFLQSLVAPGEMIGCVPAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1141
Query: 3340 LKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKN 3519
L+EIINV+K +KTPSL+V+LT A+K E AK V C LE+TTL+ VT T ++YDPDP +
Sbjct: 1142 LREIINVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMS 1201
Query: 3520 TVIAEDEEWVSIFYEMPDHDLS--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN 3693
T+I ED E+V +YEMPD D+S + SPWLLRIEL+R+ MVDKKL+M IA++I+ F +
Sbjct: 1202 TIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDD 1261
Query: 3694 DVHTIYTDDNAEKLVFRLRIAGED--KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 3867
D+ I+ DDNA+KL+ R+RI ++ KGE Q+E EDDVFL+ IE+NML+++ L+GI
Sbjct: 1262 DLTCIFNDDNAQKLILRIRIMNDEGPKGELQDESA---EDDVFLKKIESNMLTEMALRGI 1318
Query: 3868 PAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSND 4047
P I+KV++ Q ++ EGGFK+ +W+L+T+G LL V+ +DP RTTSN
Sbjct: 1319 PDINKVFIKQ-----VRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNH 1373
Query: 4048 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 4227
+ EI EVLGIEAVR+A+ E+ VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1374 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1433
Query: 4228 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 4407
+ G LMRCSFEETVDIL++AA +AE D ++GV+ENIMLGQLA GTG +L L+ E K
Sbjct: 1434 NDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLK 1493
Query: 4408 YGMEI-------------------------------------------PQNVVMGGGFYG 4458
+E+ P + + G
Sbjct: 1494 NAIELQLPSYMDGLEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVG 1553
Query: 4459 SFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNE 4635
A SPS+ SP +SP + G +PT G +SPT+ G SP G+SP T +SP
Sbjct: 1554 GMAFSPSS---SPGYSPSSPGYSPTSPG--YSPTSPGYSPTSPGYSPTSPTYSPSSP--- 1605
Query: 4636 GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
G+SP SP A SP +PSY SP YSP+SP +
Sbjct: 1606 -GYSPTSP-----AYSPTSPSYSPTSPS-YSPTSPSY 1635
Score = 52.4 bits (124), Expect = 1e-04
Identities = 36/93 (38%), Positives = 49/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SPA+SP + +PT A+SPT+ SP +SP + SP +S
Sbjct: 1653 SPSYSPTSPAYSPTSPAYSPT--SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1706
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SPG YSP+SP +
Sbjct: 1707 PTSP-----SYSPTSPAYSPTSPG-YSPTSPSY 1733
Score = 51.2 bits (121), Expect = 3e-04
Identities = 36/104 (34%), Positives = 50/104 (47%), Gaps = 14/104 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTY------------AGAAWSPTTGGMSPGAGFSPAGNTDG 4614
SPS SPA+SP + G +PT +++P + SP +SP+
Sbjct: 1709 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLS 1768
Query: 4615 GASPFN--EGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSP 4740
ASP++ +SP SP + SP +PSY SP YSPSSP
Sbjct: 1769 PASPYSPTSPNYSPTSP-----SYSPTSPSYSPSSP-TYSPSSP 1806
Score = 49.7 bits (117), Expect = 8e-04
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1618 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPAYSPTSP----AYS 1671
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP A SP +PSY SP YSP+SP +
Sbjct: 1672 PTSP-----AYSPTSPSYSPTSPS-YSPTSPSY 1698
Score = 48.9 bits (115), Expect = 0.001
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 4408 YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA- 4584
YG P + S A SPSN SPA SP+ S +P Y SPT+ SP +
Sbjct: 1740 YGPTSPSYNPQSAKYSPSIAYSPSNARLSPA-SPY-SPTSPNY-----SPTSPSYSPTSP 1792
Query: 4585 GFSPAGNTDGGASPFNEGGWSPASPG-DPLGALSPRTPSYGGMSPGVYSP 4731
+SP+ T +SP++ G ASP P SP P Y S G Y+P
Sbjct: 1793 SYSPSSPTYSPSSPYSSG----ASPDYSPSAGYSPTLPGYSPSSTGQYTP 1838
>gi|19112465|ref|NP_595673.1| DNA-directed RNA polymerase II largest
subunit [Schizosaccharomyces pombe]
gi|548817|sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II largest
subunit (RNA polymerase II subunit 1)
gi|283079|pir||S26849 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - fission yeast (Schizosaccharomyces pombe)
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit
[Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 1589 bits (4115), Expect = 0.0
Identities = 827/1631 (50%), Positives = 1099/1631 (66%), Gaps = 53/1631 (3%)
Frame = +1
Query: 13 GVDFQ---APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGV 177
G+ F PLR V VQFGIL PEEI+ MSVA +EFPE + +P++GGL+DPR G
Sbjct: 3 GIQFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGT 62
Query: 178 IDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAP 357
IDR+ +C TC + DCPGHFGH+ELAKPVFHIGFL+K KIL CVC+ CG+L ID S P
Sbjct: 63 IDRQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNP 122
Query: 358 RVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGR 537
+ + + + K RL ++++CK K VC+ GGCG
Sbjct: 123 KFNDTQRYR--DPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGH---GGCGA 177
Query: 538 YQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARP 717
QP+ R+ G+ + WK+ +E K +L+ V +F I+ ED+ +G++ Q+ARP
Sbjct: 178 AQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYARP 237
Query: 718 EWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTD 897
+WMI T G+++ +DDLTHKLSDIIK N ++R E GA AH++++
Sbjct: 238 DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297
Query: 898 DVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSART 1077
+LLQFHVAT +DN I G P A QK GRPLKSI+ RLKGKEGR+RGNLMGKRVDFSART
Sbjct: 298 YEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSART 357
Query: 1078 VITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGA 1245
VIT DPNL +D +GVPR+IA+ LT+PE VTP+N+ +LQELV G ++PGAK + G
Sbjct: 358 VITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGE 417
Query: 1246 RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMN 1425
R+DLRYH RA D+ L+ G+RVERH++DGD+++FNRQP+LHKMSMMGHR++++P+STFR+N
Sbjct: 418 RIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLN 477
Query: 1426 LSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAV 1605
LSVTSPYNADFDGDEMN+H+PQS ETRAEI+EI MVP+Q+++PQ+NKPVMGIVQDTL V
Sbjct: 478 LSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGV 537
Query: 1606 RMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRT 1785
R + RD F+ +M++++++P WDG +P P ILKPK LWTGKQ+ SLIIP +N++R
Sbjct: 538 RKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIR- 596
Query: 1786 HSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA 1965
D +P D+ ++IE+GE++ G+V KTVG S G L+H + E G EI
Sbjct: 597 --------DDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEIC 648
Query: 1966 ANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDL 2145
F++ IQ V+N WL+ G +IGIGDTIAD T ++ T+++A++ V + I+ A ++ L
Sbjct: 649 KGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRL 708
Query: 2146 EPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVI 2325
+P PG TLR++FE KV++ILN ARD G SA+ SL + NN INISQ+
Sbjct: 709 KPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMS 768
Query: 2326 ACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 2505
ACVGQQ VEGKRIPFGF++RTLPHF KDD PES+GF+ENSYL GLTP EFFFHAM GRE
Sbjct: 769 ACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGRE 828
Query: 2506 GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 2685
GLIDTAVKTAETGYIQRRL+KAME VMV YDGTVRN++ ++Q YGEDGLD VE Q
Sbjct: 829 GLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV 888
Query: 2686 MPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRL 2865
+++ + FE+ +R+DL +++ L Y E+ + +D L++ E++QL DR L
Sbjct: 889 FDSLRLSTKQFEKKYRIDLMEDRSL-SLYMENSIENDSSVQD---LLDEEYTQLVADREL 944
Query: 2866 LRK-IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVS 3042
L K IFP+GDA+ LP N+QR+I NA +IF ++ +KP +L P +I+G+ EL KL I
Sbjct: 945 LCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFR 1004
Query: 3043 GNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPG 3222
G+D I++ Q NATLL ILLRS K + + +LN AF+W++GE+E+RFQQA+ PG
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 3223 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLT 3402
EMVG LAAQS+GEPATQMTLNTFHYAGVS+KNVTLGVPRLKEI+NV+K +KTPSLT++L
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124
Query: 3403 GAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD- 3579
A + + AK+V ++EHTTL VT T I+YDPDP++TVI ED+++V F+ +PD +
Sbjct: 1125 PWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV 1184
Query: 3580 ---LSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 3750
L + SPWLLR+ELDR +M+DKKL+M +A +I F D+ TI+++DNA+KL+ R R
Sbjct: 1185 EENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCR 1244
Query: 3751 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 3930
I +D +A+++ + +E+DVFL+ IE +ML ++L+G+P I++VYM + K +
Sbjct: 1245 IIRDDDRKAEDDD-NMIEEDVFLKTIEGHMLESISLRGVPNITRVYMM-----EHKIVRQ 1298
Query: 3931 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 4110
+G F+ +W+LETDG L ++ +D RT SN EI ++LGIEA R A+ +E+
Sbjct: 1299 IEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKEL 1358
Query: 4111 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 4290
NVI FDGSYVNYRHLALLCDVMT++GHLMAITRHGINR E GALMRCSFEETV+ILM+A
Sbjct: 1359 RNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDA 1418
Query: 4291 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK-CKYGMEIPQNVVMGGGFYGS-- 4461
A E+D KG+SENIMLGQLA GTG FD+ LD + Y + + G G S
Sbjct: 1419 AASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQL 1478
Query: 4462 -----------------FAGSPSNREFSP-------------------AHSPWNSGVTPT 4533
F GSP FSP A SP+ +P
Sbjct: 1479 PEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPG 1538
Query: 4534 YAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMS 4713
Y SP + MSPG G + + + P+SP + SP +PSY S
Sbjct: 1539 YT----SPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSP-----SYSPTSPSYSPTS 1589
Query: 4714 PGVYSPSSPQF 4746
P YSP+SP +
Sbjct: 1590 PS-YSPTSPSY 1599
Score = 49.7 bits (117), Expect = 8e-04
Identities = 35/95 (36%), Positives = 49/95 (50%), Gaps = 1/95 (1%)
Frame = +1
Query: 4465 AGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGG 4641
A SPS SP++SP + +PT ++SPT+ SP +SP + SP
Sbjct: 1608 ATSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----S 1661
Query: 4642 WSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP SP + SP +PSY SP YSP+SP +
Sbjct: 1662 YSPTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1690
Score = 47.8 bits (112), Expect = 0.003
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1726
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSP 4740
P SP + SP +PSY SP YSP+SP
Sbjct: 1727 PTSP-----SYSPTSPSYSPTSPS-YSPTSP 1751
Score = 47.0 bits (110), Expect = 0.005
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPT-----YAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFN 4632
SPS SP++SP + +PT ++SPT+ SP +SP + SP
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-- 1639
Query: 4633 EGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP SP + SP +PSY SP YSP+SP +
Sbjct: 1640 --SYSPTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1669
>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
Length = 1429
Score = 1579 bits (4089), Expect = 0.0
Identities = 778/1139 (68%), Positives = 940/1139 (82%), Gaps = 13/1139 (1%)
Frame = +1
Query: 1369 MSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLI 1548
MSMMGHRVK+LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I + PRQ+I
Sbjct: 1 MSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQII 60
Query: 1549 TPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLW 1728
TPQANKPVMGIVQDTL AVR MTKRDVFI +M+LLM+LPTWD K+PQP ILKP+PLW
Sbjct: 61 TPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLW 120
Query: 1729 TGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVG 1908
TGKQ+FSLIIPGNVN++RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C K++G
Sbjct: 121 TGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLG 180
Query: 1909 KSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTI 2088
SAG+LLH+ LELG++IA FY +IQTVIN WL+ EGH+IGIGDTIAD TY +IQ I
Sbjct: 181 TSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAI 240
Query: 2089 RKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNF 2268
+KAK DV++VI+KAHN +LEPTPGNTLRQTFENKVN+ILNDARD+TG SA+KSL+E+NN
Sbjct: 241 KKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNL 300
Query: 2269 XXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENS 2448
INISQVIACVGQQNVEGKRIP+GFR RTLPHFIKDDYGPES+GFVENS
Sbjct: 301 KAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENS 360
Query: 2449 YLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQM 2628
YLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q+
Sbjct: 361 YLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQL 420
Query: 2629 VQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESE 2808
+QLRYGEDGL G VE QNMPT+K +N FE+ F+ D ++ + ++K +++DV++E+ +S
Sbjct: 421 IQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSS 480
Query: 2809 DGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSP 2988
+ I +E+EW +L DR LR+IFP G++K+VLPCNLQR+IWN QKIF ++ R P +LSP
Sbjct: 481 EAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSP 540
Query: 2989 LHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFD 3168
+ VI GV+ L ++ +IV+GND ISKQA NATLL L+RSTLCTK + + +L++EAF+
Sbjct: 541 IRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFE 600
Query: 3169 WLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE 3348
WL+GEIE+RFQQA A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE
Sbjct: 601 WLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKE 660
Query: 3349 IINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVI 3528
IIN+SK K PSLTVFLTG AA+D EKAK+VLC+LEHTTL+KVT NTAIYYDPDP+ TVI
Sbjct: 661 IINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVI 720
Query: 3529 AEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTI 3708
+ED+E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME IA++I+ GFG D++ I
Sbjct: 721 SEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCI 780
Query: 3709 YTDDNAEKLVFRLRIAG--EDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISK 3882
+ DDNA+KLV R+RI E+K + ++E VDKMEDD+FLRCIEANMLSD+TLQGI AI K
Sbjct: 781 FNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGK 840
Query: 3883 VYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIF 4062
VYM+ P TD KKRI+IT G FK++ +W+LETDGT++++VLSER +DP+RT+SNDICEIF
Sbjct: 841 VYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIF 900
Query: 4063 EVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGA 4242
+VLGIEAVRK++E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GA
Sbjct: 901 QVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 960
Query: 4243 LMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEI 4422
LMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL + GTGCFDL+LD EKC++G+EI
Sbjct: 961 LMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEI 1020
Query: 4423 PQ---NVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPT--TGGMSPGA- 4584
P N ++GG F G S +P +PW + TP Y +SP M+PG
Sbjct: 1021 PNTLGNSMLGGA--AMFIGGGSTPSMTPPMTPWANCNTPRY----FSPPGHVSAMTPGGP 1074
Query: 4585 GFSPAGNTD-GGASPFNEGGWSPASPG----DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
FSP+ +D G SP WSPA PG P ++SP P+ +SP YSP+SP +
Sbjct: 1075 SFSPSAASDASGMSP----SWSPAHPGSSPSSPGPSMSPYFPASPSVSPS-YSPTSPNY 1128
Score = 49.7 bits (117), Expect = 8e-04
Identities = 36/110 (32%), Positives = 55/110 (49%), Gaps = 14/110 (12%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAGFSPAGNTDGGASPF- 4629
S+ GSP + +++P SP S +P Y+ + +SP++ SP +SP G+T SP
Sbjct: 1309 SYDGSPGSPQYTPG-SPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRY 1367
Query: 4630 --NEGGWSPAS----PGDPLGA-----LSPRTPSYGGMSPGVYSPSSPQF 4746
N +SP+S P P SP +P Y +P YSP+SP +
Sbjct: 1368 SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAY 1417
Score = 47.8 bits (112), Expect = 0.003
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-----GAGFSPAGNTDGGASPFNE 4635
SPS SP ++P +PT + SP SP G +SP T SP +
Sbjct: 1252 SPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1311
Query: 4636 GGWSPASPGDPLGA--LSPRTPSYGGMSPGVYSPSSPQ 4743
G SP SP G+ SP +P Y SP +YSPSSPQ
Sbjct: 1312 G--SPGSPQYTPGSPQYSPASPKYSPTSP-LYSPSSPQ 1346
Score = 42.4 bits (98), Expect = 0.13
Identities = 37/106 (34%), Positives = 50/106 (46%), Gaps = 14/106 (13%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGG-- 4641
SPS SP++SP + +PT +SPT+ SP ++P + SP
Sbjct: 1224 SPSYSPTSPSYSPSSPSYSPT--SPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQ 1281
Query: 4642 WSPASPG--------DPLG-ALSPRTPSYGGMSPG--VYSPSSPQF 4746
+SPASP P SP +PSY G SPG Y+P SPQ+
Sbjct: 1282 YSPASPAYSQTGVKYSPTSPTYSPPSPSYDG-SPGSPQYTPGSPQY 1326
>gi|12083527|gb|AAG48836.1| similar to Arabidopsis thaliana
DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
(JDMU1) [Oryza sativa]
Length = 1741
Score = 1570 bits (4064), Expect = 0.0
Identities = 824/1590 (51%), Positives = 1082/1590 (67%), Gaps = 24/1590 (1%)
Frame = +1
Query: 43 VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 222
V VQFG+L P+EI++MSV H+E E E GKPK GGL DPR G IDR+ +C TC +
Sbjct: 16 VEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGTIDRKIKCETCMAGMA 75
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
+CPGHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + + LK N K
Sbjct: 76 ECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQALKIR--NPKN 133
Query: 403 RLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAE 582
+L IYD CK + +C G GGCG QP+ G+ + AE
Sbjct: 134 KLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKR----GGCGAQQPNITVDGMKMVAE 189
Query: 583 WK--KNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
+K K N+D ++ + +++L
Sbjct: 190 YKAPKKKNDDQEQLPEPVDRKQILSA---------------------------------- 215
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
+DDLTH+L+ II+ N+ L+R E NGA AH++T+ +LLQFH+AT
Sbjct: 216 -------------ERDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYF 262
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DPN+ ID +
Sbjct: 263 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDEL 322
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRA 1275
GVP +IA NLT+PE VTP+N+++L+ELV G PG +E+G R+DLRY ++
Sbjct: 323 GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 382
Query: 1276 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
+D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSVTSPYNAD
Sbjct: 383 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 442
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKRD I
Sbjct: 443 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLI 502
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
+ M++LM+ +DGKVP PAILKP+P+WTGKQVF+LIIP +N++R H ++E
Sbjct: 503 EKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSGWHSEAET- 561
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
++I+PGDT V IE GELLSG +C KT+G S G+L+HV+ E+G + A F H Q +
Sbjct: 562 ---RFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 618
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL++ G +IGIGDTIAD AT +I TI KAK DV +I++ ++ LE G T +
Sbjct: 619 VNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRTTME 678
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
+FEN+VN++LN ARD GSSA+KSLSE NN INISQ+ ACVGQQNVEG
Sbjct: 679 SFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVEG 738
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGF +RTLPHF K+DYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 739 KRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 798
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K A
Sbjct: 799 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAE 858
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDR-RLLRKIFPRGD 2892
F+ FR +L D + S +++ + ++ E+E +LE DR +L +I GD
Sbjct: 859 FDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGD 918
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
+P NL+RLIWNAQK FK+DLR+P ++ P+ ++ + +L ++L +V G+D+IS +AQ
Sbjct: 919 NTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQ 978
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRST +K + + +L EAF+W++GEIESRF Q++ PGEM+G +AAQS
Sbjct: 979 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1038
Query: 3253 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKA 3432
+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+V L K E A
Sbjct: 1039 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEVNKKKELA 1098
Query: 3433 KDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDL--SRTSPWLL 3606
K+V C LE+TTL+ VT T I+YDPDP T+I ED E+V +YEMPD D+ + SPWLL
Sbjct: 1099 KNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLL 1158
Query: 3607 RIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGED--KGEAQ 3780
RIEL+R+ MVDKKL+M IA++I+ F +D+ I+ DDNA+KL+ R+RI ++ KGE Q
Sbjct: 1159 RIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKGEIQ 1218
Query: 3781 EEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVA 3960
+E EDDVFL+ IE+NML+++ L+GIP I+KV++ + N + GFK+
Sbjct: 1219 DEY---GEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNK-----FEDNDGFKTEK 1270
Query: 3961 DWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSY 4140
W+L+T+G LL V+ +D RTTSN + E+ EVLGIEAVR+A+ E+ VISFDGSY
Sbjct: 1271 GWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSY 1330
Query: 4141 VNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVK 4320
VNYRHLA+LCD MT +GHLMAITRHGINR + G LMRCSFEETVDIL++AAV+AE DP++
Sbjct: 1331 VNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDPLR 1390
Query: 4321 GVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPA 4500
GVSENIMLGQLA GTG DL L+ + K +E+ + G +G + S +P
Sbjct: 1391 GVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISGTPY 1450
Query: 4501 HSPWNS---------GVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPA 4653
H S +PT A A +SP GGM+ FSP ++ G +P + GG+SP+
Sbjct: 1451 HQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMA----FSPV-SSPGNYTPSSGGGYSPS 1505
Query: 4654 SPGDPLGALSPRTPS-YGGMSPGVYSPSSP 4740
P G S + S Y +SP YSP+SP
Sbjct: 1506 PPVCTPGPGSFTSSSPYNPVSP-FYSPASP 1534
Score = 50.8 bits (120), Expect = 4e-04
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Frame = +1
Query: 4459 SFAGSPSNREFSP-----AHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGA 4620
S++ SP++ +SP ++SP + +PT +SPT+ SP +SP +
Sbjct: 1613 SYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPT 1672
Query: 4621 SPFNEGGWSPASP--GDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP +SP SP A SP +P+Y SPG YSP+SP +
Sbjct: 1673 SP----SYSPTSPSYSPTSSAYSPTSPAYSPTSPG-YSPTSPSY 1711
Score = 47.8 bits (112), Expect = 0.003
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA---GFSPAGNTDGGASP-FNEG 4638
SP S A+SP + PT ++SPT+ SP + +SP + SP +N
Sbjct: 1590 SPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYS 1649
Query: 4639 GWSPA-SPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP+ SP P + SP +PSY SP YSP+SP +
Sbjct: 1650 PTSPSYSPTSP--SYSPTSPSYSPTSPS-YSPTSPSY 1683
Score = 46.6 bits (109), Expect = 0.007
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWN-SGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFN 4632
S++ SP++ +SP +N S +P+Y SPT+ SP +SP + SP
Sbjct: 1629 SYSYSPTSPSYSPTSPSYNYSPTSPSY-----SPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683
Query: 4633 EGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
S SP P A SP +P Y SP YSPSSP +
Sbjct: 1684 SPTSSAYSPTSP--AYSPTSPGYSPTSPS-YSPSSPSY 1718
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit
[Acanthamoeba castellanii]
Length = 1569
Score = 1557 bits (4032), Expect = 0.0
Identities = 818/1557 (52%), Positives = 1073/1557 (68%), Gaps = 49/1557 (3%)
Frame = +1
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
+CPGHFGHLELAKPVF+IGFLT LKILR VCF+C +LL+D++ + LK N K
Sbjct: 1 ECPGHFGHLELAKPVFNIGFLTTVLKILRSVCFHCSKLLVDEA-----QELK----NVKH 51
Query: 403 RLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVA---GGCGRYQPSYRRVGIDI 573
R +Y L K K++CEG V GGCG +QP + G+ I
Sbjct: 52 RFARVYTLAKTKTICEGGEDTGTDKEQGDSTDPKEKKEVKKSHGGCGNFQPKITKDGMKI 111
Query: 574 NAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXX 753
AE+K ++ E+K +LTAE+V + + I+DED L +G DP++ARP+WMI T
Sbjct: 112 MAEFKNVGDDPNVEKKQLLTAEKVHAILKLISDEDCLAMGFDPKWARPDWMIITIMPIPP 171
Query: 754 XXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATL 933
+A+ +DDLTHKL+DIIK N L++ EANGAAAH+++ LLQ+H+AT
Sbjct: 172 PPVRPSITMDSAARGEDDLTHKLADIIKANANLRKQEANGAAAHIISQFQELLQYHIATF 231
Query: 934 VDNCIPGLPTAT-QKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPID 1110
+DN IPG P AT + G R LKS+KQRL+GKEGRIRGNLMGKRVDFSARTVIT DPN+ ID
Sbjct: 232 IDNEIPGFPQATVRSGSRALKSLKQRLRGKEGRIRGNLMGKRVDFSARTVITGDPNISID 291
Query: 1111 TVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAA 1278
VGVPR+IA NLT+PE+VTPFN+DK+ EL+ G T++PGAK ++G R+DLR+ +A+
Sbjct: 292 EVGVPRSIALNLTYPELVTPFNIDKMYELIRNGPTEHPGAKYIIRDDGQRLDLRFARKAS 351
Query: 1279 DLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADF 1458
DLHL+ GY+VERH++DGD+I+FNRQP+LHKMSMMGH+VKI+P+STFR+NLSVT+PYNADF
Sbjct: 352 DLHLEYGYKVERHIQDGDVIIFNRQPSLHKMSMMGHKVKIMPYSTFRLNLSVTTPYNADF 411
Query: 1459 DGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 1638
DGDEMN+H+PQ+ RAE+ E+ MVP+Q++T Q+NKPV+GIVQDTL ++T+RD FI+
Sbjct: 412 DGDEMNMHVPQTPGARAEVIELMMVPKQIVTAQSNKPVIGIVQDTLLGGCLLTQRDTFIE 471
Query: 1639 WPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSG 1818
MM++LM+L +WDG VP P ILKPK LWTGKQVFSLIIP N N + PD
Sbjct: 472 KDVMMNILMWLESWDGTVPTPTILKPKQLWTGKQVFSLIIPRNTNFVNADDEEPD----- 526
Query: 1819 PYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 1998
+S D KV+IE GEL+SGI+ KT+G S +L+HV+ E G E+ +F + +Q V+
Sbjct: 527 ----MSFTDNKVLIEEGELVSGILNKKTLGTSHKSLVHVIWNEHGSEVCKHFLNQVQHVV 582
Query: 1999 NAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQT 2178
N WL+ G ++G+GDTIAD+ T I TIRKAK +V + +A LE PG T+ ++
Sbjct: 583 NYWLLHHGFSVGVGDTIADEETLAKITQTIRKAKDEVKERQLEAQQGQLERQPGRTMMES 642
Query: 2179 FENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGK 2358
FE +NQILN ARD G+SAQKSL NNF INISQV+ACVGQQNVEGK
Sbjct: 643 FEFVINQILNKARDDAGNSAQKSLRRSNNFKAMVIAGSKGSAINISQVLACVGQQNVEGK 702
Query: 2359 RIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 2538
RIPF FR RTLPHF+KDD+GPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKTAE
Sbjct: 703 RIPFCFRDRTLPHFVKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 762
Query: 2539 TGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVF 2718
TGYIQRRL+KA+E VMV YD TVRNSL ++Q YGEDG+DG VE Q + +K +N
Sbjct: 763 TGYIQRRLVKALEDVMVKYDYTVRNSLGDVIQFLYGEDGMDGQTVETQPLDALKMSNEGV 822
Query: 2719 ERDFRMDLTDNKFLRKNYSEDVVRE-IQESEDGISLVESEWSQLEEDRRLLR-KIFPRGD 2892
++ D D+ + + + V+ + I S + +++ E+ Q+ DRRLLR KIF GD
Sbjct: 823 VLKYQHDY-DSPSWGEGWIDPVIADAIANSPEKKRILDKEFEQILADRRLLREKIFLAGD 881
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
+ LP NL R+I NAQKIF + +K +L P ++ + L ++L+++ G D+ISK+AQ
Sbjct: 882 DRWPLPVNLTRMILNAQKIFHLGPKKVSDLDPCQIVEDLGNLIERLVVIPGQDDISKEAQ 941
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NA LL +ILLR TL ++ + + +L+ ++DWLLGEI RF +++ PGEM+GALAAQS
Sbjct: 942 ANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGALAAQS 1001
Query: 3253 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKA 3432
+GEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN++KT+KTPSLTV+L ++D E A
Sbjct: 1002 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKTIKTPSLTVYLEPHCSRDHEAA 1061
Query: 3433 KDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDL--SRTSPWLL 3606
K+V C L+HTTL+ VT T I+YDPDP NTVI ED+++V ++ MP+ ++ S SPWLL
Sbjct: 1062 KNVQCSLQHTTLRDVTAATEIFYDPDPVNTVITEDQDFVRAYFLMPEEEINTSNLSPWLL 1121
Query: 3607 RIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEE 3786
RIEL+R++M D KL+M+ IA+RIH FG D++ IY DDNA+KL+ R+RI +++ +A ++
Sbjct: 1122 RIELNREKMTDTKLSMQEIAERIHADFGGDLNCIYNDDNADKLILRIRINNDEENKAPDQ 1181
Query: 3787 QVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADW 3966
+ +DDVFL+ IE+NML+++ L+GI I KV++ +DK ++ I G + +
Sbjct: 1182 EGSVGDDDVFLKQIESNMLTEMDLKGIEGIKKVFIR----EDKNKVAIDARGEYTKANEL 1237
Query: 3967 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 4146
+L+T+GT LL V+S +D RTTSN+I E EVLGIEAVR A+ RE+ NVISFDG+YVN
Sbjct: 1238 VLDTEGTNLLAVMSHPDVDHTRTTSNNIIETIEVLGIEAVRNALLRELRNVISFDGAYVN 1297
Query: 4147 YRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGV 4326
YRHLA+L DVMT +GHLMAITRHGINR E G LMRCSFEET DIL+EAA +E DP+ GV
Sbjct: 1298 YRHLAILADVMTYRGHLMAITRHGINRVETGCLMRCSFEETADILLEAATFSELDPLSGV 1357
Query: 4327 SENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSN-------- 4482
SENI+LGQL GTGCFDL L+ K K +E P FY A SP +
Sbjct: 1358 SENILLGQLPPLGTGCFDLFLNESKLKDAIEPPAGGEATAMFYEPGATSPGSATPYMGSD 1417
Query: 4483 -----------------------REFSP-----AHSPWNSGVTPTYAGAAWSPTTGGMSP 4578
+SP SP +P+ + ++SP + G SP
Sbjct: 1418 ERYLPNFFHTTPMYRMSPGATPAASYSPYVDFGEFSPGRGSFSPSPSSPSYSPASPGYSP 1477
Query: 4579 -GAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
GAG+SP+ +SP G+SP+SPG SP +P Y SP YSP+SP++
Sbjct: 1478 AGAGYSPSSPGYSPSSP----GYSPSSPG-----YSPASPGYSPSSP-AYSPTSPKY 1524
>gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida
albicans SC5314]
Length = 1728
Score = 1540 bits (3986), Expect = 0.0
Identities = 811/1616 (50%), Positives = 1080/1616 (66%), Gaps = 43/1616 (2%)
Frame = +1
Query: 28 APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGVIDRRGRCM 201
APLR V VQFG+L PEE++ +SVA +E+PE + +P+ GGL DPR G IDR RC
Sbjct: 10 APLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNFRCQ 69
Query: 202 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 381
TC ++ +CPGHFGH+ELAKPVFHIGF+ K K VC +CG+LL+D++ P + + +K
Sbjct: 70 TCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNPAMAQAIKI 129
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
+ KKR ++ LCK K VCE GGCG QP+ RR
Sbjct: 130 R--DPKKRFNAVWSLCKTKMVCE----------TDNNEDEMTDQPSRGGCGHPQPTIRRD 177
Query: 562 GIDINAEWKKNVNEDT--QERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICT 735
G+ + WK+N N D Q + +LT +L VF+ I+ ED +G + +ARPEWM+ T
Sbjct: 178 GLKLWGTWKQNKNYDDNDQPERRLLTPSEILNVFKHISPEDCYKMGFNEDYARPEWMLIT 237
Query: 736 XXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQ 915
+A+ +DDLT KL+DIIK N +QR E +G+ HV+++ LLQ
Sbjct: 238 VLPVPPPPVRPSIAFNETARGEDDLTFKLADIIKANINVQRLETDGSPQHVISEFEALLQ 297
Query: 916 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 1095
FHVAT +DN I G P A QK GRP+KSI+ RLKGKEGR+RGNLMGKRVDFSARTVI+ DP
Sbjct: 298 FHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDP 357
Query: 1096 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRY 1263
NL +D VGVP +IA+ LT+PEIVTP+N+ KL ELV G ++PGAK + G R+DLRY
Sbjct: 358 NLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRY 417
Query: 1264 HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+ RA D+ LQ G++VERH+ D D ++FNRQP+LHKMSMM HRV+++P+STFR+NLSVTSP
Sbjct: 418 NKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSP 477
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLH+PQS ETR+E+ +I VP Q+++PQ+NKPVMGIVQDTLC +R MT R
Sbjct: 478 YNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLR 537
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPD 1803
D+FI++ +M++ ++P WDG +P PA++KPK LWTGKQ+ SL IP +++ R
Sbjct: 538 DIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLLSLAIPKGIHLQRF------ 591
Query: 1804 SEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSH 1983
G +SP DT ++I GE++ G+V KTVG + G L+H V E G ++ A +S
Sbjct: 592 ---DGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSS 648
Query: 1984 IQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGN 2163
IQ V+N WL+ G +IGIGDTIAD T D+ TI++AKQ V ++I A ++ LEP PG
Sbjct: 649 IQKVVNYWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGM 708
Query: 2164 TLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQ 2343
TLR++FE+ V+++LN ARD G SA+ SL + NN INISQ+ ACVGQQ
Sbjct: 709 TLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQ 768
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
VEGKRIPFGF R+LPHF KDDY PESKGFVENSYL GLTP EFFFHAM GREGLIDTA
Sbjct: 769 IVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 828
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKP 2703
VKTAETGYIQRRL+KA+E +MV+YDGT RNSL ++Q YGEDG+DG VE Q++ T+
Sbjct: 829 VKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPG 888
Query: 2704 NNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKI-F 2880
++ FER +++D+ D + + + +EI+ +++ E++QL +DR+ LR++ F
Sbjct: 889 SDESFERRYKIDVLDTENVISESLLESGKEIRGDVQLQKILDEEYNQLLKDRKYLREVCF 948
Query: 2881 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 3060
P GD LP NL+R+I NAQ+IF + +L ++ GV+EL KL++V G+ +
Sbjct: 949 PNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGDTPLV 1008
Query: 3061 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 3240
K+AQ NATLL LLRS L + + + KLN +F+W++GEIE++FQ++I PGEMVG +
Sbjct: 1009 KEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVV 1068
Query: 3241 AAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKD 3420
AAQS+GEPATQMTLNTFHYAGVS+KNVTLGVPRLKEI+NV+K +KTP++TVFL A D
Sbjct: 1069 AAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVASD 1128
Query: 3421 PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPD----HDLSR 3588
EKAK V +EHTTLK VT +T IYYDPDP+ TVI +D + V ++ +PD + +
Sbjct: 1129 IEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPDQKVEESIDK 1188
Query: 3589 TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK 3768
SPWLLR+ELDR +M+DK+LTM +A++I FG D+ I++DD A+KL+ R R+ + K
Sbjct: 1189 QSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPK 1248
Query: 3769 GEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
+ +E D ED + L+ IEA+ML ++L+GIP I++V+M Q G F
Sbjct: 1249 --SLDEDADAEEDQI-LKRIEAHMLESISLRGIPGITRVFMMQHKVSHPDE-----TGEF 1300
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
K +W+LETDG L V++ +D RT SND E+ VLGIEA R ++ +E+ NVI+F
Sbjct: 1301 KQGKEWVLETDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAF 1360
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
DGSYVNYRH+ALL DVMT++GHLMAITRHGINR + GALMRCSFEETV+IL++AA AE
Sbjct: 1361 DGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAEL 1420
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLD---VEKCKYGMEIPQNVVMGGGF--YGSFAGS 4473
D KG+SEN+MLGQ+A GTG FDL++D ++K M + ++ GGG Y + +
Sbjct: 1421 DDCKGISENVMLGQMAPLGTGSFDLMVDDRMLQKAPSSMAM-DDIADGGGATPYKDYENA 1479
Query: 4474 -------PSNREFSPAH----SPWNSGVTPTYAGAAWSP--------------TTGGMSP 4578
+ FSP H + N G +Y G SP + G SP
Sbjct: 1480 RDENIDIDAGAGFSPIHIAQMNEGNIGGLTSYGGQPTSPAATSPFSYGYNSITSPGYTSP 1539
Query: 4579 GAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
G G+SP + SP ++P SP A SP +PSY SP YSP+SP +
Sbjct: 1540 GYGYSPTSPSYSPTSP----SYAPTSP-----AYSPTSPSYAPTSP-AYSPTSPSY 1585
Score = 52.4 bits (124), Expect = 1e-04
Identities = 37/93 (39%), Positives = 49/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SPA+SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1582 SPSYAPTSPAYSPTSPAYSPT--SPSYSPTSPQYSPTSPSYSPTSPSYSPTSP----SYS 1635
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP A SP +PSY SP YSP+SPQ+
Sbjct: 1636 PTSP-----AYSPTSPSYSPTSPS-YSPTSPQY 1662
Score = 40.4 bits (93), Expect = 0.49
Identities = 32/92 (34%), Positives = 43/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1645 SPSYSPTSPSYSPTSPQYSPT--SPSYSPTSPQYSPTSPSYSPTSPQYSPTSP----QYS 1698
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQ 4743
P SP SP +P Y SPG Y P P+
Sbjct: 1699 PTSP-----QYSPTSPQYSPGSPG-YEPEPPK 1724
>gi|50409953|ref|XP_456921.1| unnamed protein product [Debaryomyces
hansenii]
gi|49652585|emb|CAG84899.1| unnamed protein product [Debaryomyces
hansenii CBS767]
Length = 1749
Score = 1520 bits (3935), Expect = 0.0
Identities = 805/1600 (50%), Positives = 1075/1600 (66%), Gaps = 27/1600 (1%)
Frame = +1
Query: 28 APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGVIDRRGRCM 201
APLR V VQFG+L PEE++ +SVA +E+PE + KP+ GL DPR G IDR +C
Sbjct: 10 APLRSVKEVQFGLLSPEEVRAISVAKIEYPETIDQSTKKPREAGLNDPRLGSIDRNLKCQ 69
Query: 202 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 381
TC ++ +CPGHFGH+EL KPVFHIGF+ K K+ CVC +CG+LL+D++ + + +K
Sbjct: 70 TCGEDMAECPGHFGHIELTKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNLAMSQAIKI 129
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
+ KKR +++LCKAK +CE GGCG QP+ RR
Sbjct: 130 R--DPKKRFNAVWNLCKAKMICEADNVTSENDPNWKPDQPNK-----GGCGHTQPTVRRD 182
Query: 562 GIDINAEWKKNVN--EDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICT 735
G+ + WK+N N E+ Q + +LT +L VF+ I +D +G + +ARPEWM+ T
Sbjct: 183 GLKLWGTWKQNKNFDENEQPERRLLTPSEILSVFKHINSQDCYRLGFNEDYARPEWMLIT 242
Query: 736 XXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQ 915
+A+ +DDLT KL+D++K N +QR E +G+ HV+++ LLQ
Sbjct: 243 VLPVPPPPVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQ 302
Query: 916 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 1095
FHVAT +DN I G P A QK GRP+KSI+ RLKGKEGR+RGNLMGKRVDFSARTVI+ DP
Sbjct: 303 FHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDP 362
Query: 1096 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRY 1263
NL +D VGVP +IA+ L++PEIVTP+N+ +L E V G ++PGAK + G R+DLRY
Sbjct: 363 NLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRY 422
Query: 1264 HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+ RA D+ LQ G++VERH+ D D ++FNRQP+LHKMSMM HRVK++P+STFR+NLSVTSP
Sbjct: 423 NKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSP 482
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLH+PQS ETRAE+ +I VP Q+++PQ+NKPVMGIVQDTLC VR MT R
Sbjct: 483 YNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLR 542
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPD 1803
D FI++ +M++L ++P WDG +P PAI+ PKPLWTGKQ+ S+ IP +++ R
Sbjct: 543 DNFIEYDQVMNMLYWIPNWDGVIPPPAIVSPKPLWTGKQLLSMAIPKGIHLQRF------ 596
Query: 1804 SEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSH 1983
D G +SP D +++ GE++ G+V KTVG + G L+H V E G ++ A +S
Sbjct: 597 --DDGK-NLLSPKDNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSS 653
Query: 1984 IQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGN 2163
IQ V+N WL+ G +IGIGDTIAD +T D+ TI+ AK V ++I A + LEP PG
Sbjct: 654 IQKVVNFWLLHNGFSIGIGDTIADSSTMRDVTTTIQDAKDKVQEIILDAQLNKLEPEPGM 713
Query: 2164 TLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQ 2343
TLR++FE+ V+++LN ARD G SA+ +L + NN INISQ+ ACVGQQ
Sbjct: 714 TLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQ 773
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
VEGKRIPFGF R+LPHF KDDY PESKGFVENSYL GLTP EFFFHAM GREGLIDTA
Sbjct: 774 IVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTA 833
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKP 2703
VKTAETGYIQRRL+KA+E +MV+YDG+ RNSL ++Q YGEDG+DG VE Q++ T+
Sbjct: 834 VKTAETGYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPG 893
Query: 2704 NNAVFERDFRMDLTD-NKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKI- 2877
++ FE+ +R+D+ D +K +R++ E +EI+ +++ E+ QLE DRR LR +
Sbjct: 894 SDESFEKRYRIDVLDPSKSIRESLLES-GKEIKGDVKLQKVLDEEYRQLEADRRYLRDVC 952
Query: 2878 FPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEI 3057
FP GD LP NL+R+I NAQ+IF K +L V+ GV++L KL+++ G +
Sbjct: 953 FPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLVIRGKTAL 1012
Query: 3058 SKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGA 3237
+K+AQ NATLL LLRS L T+ + + KL+ +F+W++GEIE++FQ++I PGEMVG
Sbjct: 1013 TKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGV 1072
Query: 3238 LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAK 3417
+AAQS+GEPATQMTLNTFHYAGVS+KNVTLGVPRLKEI+NV+K +KTP+LTV+L +A
Sbjct: 1073 IAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESAA 1132
Query: 3418 DPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPD----HDLS 3585
D EKAK V +EHTTLK VT T I+YDPDP++TVI ED + V ++ +PD +
Sbjct: 1133 DIEKAKIVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDEKVEESIE 1192
Query: 3586 RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGED 3765
+ SPWLLR+ELDR +M+DK+LTM +A++I FG D+ I++DD A+KL+ R R+ +
Sbjct: 1193 KQSPWLLRLELDRAKMLDKQLTMSQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDP 1252
Query: 3766 KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGG 3945
K + +E D ED + L+ IE++ML ++L+GIP I++V+M Q + IT G
Sbjct: 1253 K--SLDEDADAEEDQI-LKRIESHMLESISLRGIPGITRVFMMQHKVNSPD---IT--GE 1304
Query: 3946 FKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVIS 4125
FK +W+LETDG L V++ +D RT SN+ E+ VLGIEA R A+ +E+ NVI+
Sbjct: 1305 FKQSQEWVLETDGVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIA 1364
Query: 4126 FDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAE 4305
FDGSYVNYRH+ALL DVMT++GHLMAITRHGINR + GALMRCSFEETV+IL+EA AE
Sbjct: 1365 FDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAGSAAE 1424
Query: 4306 EDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVM---GGGFYGSFAGSP 4476
D +G+SEN+MLGQ+A GTG FD+++D K P N+ + G G +A
Sbjct: 1425 LDDCRGISENVMLGQMAPLGTGAFDVMVD---DKMLQTAPSNIAVTTAAGNETGEYAD-- 1479
Query: 4477 SNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSP---AGNTDGGASPFNEGGWS 4647
+ G TP Y GAGFSP A +DG + + GG +
Sbjct: 1480 ------------DGGATP-YRDYEMQDDKIQFEEGAGFSPIHTAPVSDGSGALTSYGGAT 1526
Query: 4648 PASPGDPL--GALSP-----RTPSYGGMSPGVYSPSSPQF 4746
SP P GA SP +P YGG SP YSP+SP +
Sbjct: 1527 SPSPTSPFSYGATSPSFGGVTSPGYGGTSP-TYSPTSPSY 1565
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1562 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1615
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1616 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1642
Score = 48.5 bits (114), Expect = 0.002
Identities = 39/115 (33%), Positives = 55/115 (46%), Gaps = 2/115 (1%)
Frame = +1
Query: 4408 YGMEIPQNVVMGGGFYGSFAG-SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-G 4581
YG P GG + G SP+ SP++SP + +PT ++SPT+ SP
Sbjct: 1536 YGATSPS---FGGVTSPGYGGTSPTYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTS 1590
Query: 4582 AGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP + SP +SP SP + SP +PSY SP YSP+SP +
Sbjct: 1591 PSYSPTSPSYSPTSP----SYSPTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1635
Score = 48.5 bits (114), Expect = 0.002
Identities = 35/93 (37%), Positives = 48/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1639 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPQYSPTSP----QYS 1692
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SPQ+
Sbjct: 1693 PTSP-----SYSPTSPSYSPTSP-QYSPTSPQY 1719
Score = 47.8 bits (112), Expect = 0.003
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPF---NEG 4638
SPS SP++SP + +PT ++SPT+ SP +SP + SP
Sbjct: 1618 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1675
Query: 4639 GWSPASP--GDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP SP SP +PSY SP YSP+SPQ+
Sbjct: 1676 SYSPTSPQYSPTSPQYSPTSPSYSPTSPS-YSPTSPQY 1712
>gi|50557434|ref|XP_501909.1| hypothetical protein [Yarrowia
lipolytica]
gi|49647776|emb|CAG82229.1| unnamed protein product [Yarrowia
lipolytica CLIB99]
Length = 1721
Score = 1518 bits (3930), Expect = 0.0
Identities = 803/1599 (50%), Positives = 1065/1599 (66%), Gaps = 45/1599 (2%)
Frame = +1
Query: 85 KRMSVAHVEFPEVYENGK--PKLGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELA 258
K MSVA +EFPE + + P++GGL DPR G IDR +C TC + +CPGHFGH+ELA
Sbjct: 1 KAMSVAKIEFPETMDETRQRPRVGGLNDPRLGTIDRNFKCQTCGEGMAECPGHFGHIELA 60
Query: 259 KPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYDLCKAK 438
KPVFHIGF+ K KI VCF+CG++L+D++ + + ++ + K+R ++ LCK K
Sbjct: 61 KPVFHIGFIAKIKKICESVCFHCGKVLLDENNKQFAQAIRIR--DPKRRFNAVWSLCKTK 118
Query: 439 SVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQ-- 612
VCE GGCG QP+ RR G+ + WK+ N D
Sbjct: 119 MVCETDVPTEDDGSGVVKHSH-------GGCGNIQPTVRRDGLKLWGTWKRGKNGDDMGD 171
Query: 613 -ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXTFGS 789
K +LT +L VF+ I+ ED +G++ +ARPEW+I T +
Sbjct: 172 SPEKRLLTPAEILNVFKHISSEDCQRLGLNEDYARPEWLIITTLPVPPPPVRPSIAINDT 231
Query: 790 AKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTAT 969
A+ +DDLT+KL+DI+K N +QR E GA AHV+ + LLQ+HVAT +DN I G P A
Sbjct: 232 ARGEDDLTYKLADILKANANVQRCEQEGAPAHVVNEFESLLQYHVATYMDNDIAGQPQAL 291
Query: 970 QKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLT 1149
QK GRP+KSI+ RLKGKEGR+RGNLMGKRVDFSARTVIT DPNL +D VGVPR+IA+ LT
Sbjct: 292 QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLT 351
Query: 1150 FPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVERH 1317
+PEIVTPFN+ KL E V G ++PGAK + G R+DLRYH RA D+ LQ G++VERH
Sbjct: 352 YPEIVTPFNIHKLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERH 411
Query: 1318 MKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSL 1497
+ D D ++FNRQP+LHKMSMM HRV+++P+STFR+NLSVTSPYNADFDGDEMNLH+PQS
Sbjct: 412 LMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 471
Query: 1498 ETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPT 1677
ETRAE+ ++ MVP Q+++PQ+NKPVMGIVQDTLC VR MT RD FID+ +M++L ++P
Sbjct: 472 ETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFWIPN 531
Query: 1678 WDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVI 1857
WDG VP PAILKPKPLWTGKQ+ S+ IP +++ R +P + P D +
Sbjct: 532 WDGVVPTPAILKPKPLWTGKQMVSMCIPKGIHLQRFDDQNPIT---------CPKDNGMY 582
Query: 1858 IEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGI 2037
I G+++ G+V KT+G + G L+H + E G + NF+ IQ V+N WL+ G +IGI
Sbjct: 583 IIDGQIMWGVVDKKTIGATGGGLVHTIMREKGSAVCCNFFGTIQKVVNFWLLHYGFSIGI 642
Query: 2038 GDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDAR 2217
GDTIAD AT D+ TI +AK+ V ++I +AH + L G T+R++FE+ V+++LN AR
Sbjct: 643 GDTIADSATMRDVTETIEEAKKKVKEIILEAHANTLTAEAGMTMRESFEHNVSRVLNQAR 702
Query: 2218 DRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPH 2397
D G SA+ SL + NN INISQ+ ACVGQQ VEGKR+PFGF RTLPH
Sbjct: 703 DTAGRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQQMVEGKRVPFGFADRTLPH 762
Query: 2398 FIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 2577
F KDDY PESKGF+ENSYL GLTP EFFFHAM GREGLIDTAVKTAETGYIQRRL+KA+E
Sbjct: 763 FCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 822
Query: 2578 SVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTD--N 2751
VMV YDGTVRNSL ++Q YGEDGLDG VE Q + T+ ++ FER +++DL +
Sbjct: 823 DVMVQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQTVDTIPGSDESFERRYKIDLMNPKT 882
Query: 2752 KFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRL 2928
K L D+V +++ +++ E++QL DRRLLR ++F GD LP N++R+
Sbjct: 883 KPLNIESGNDIVGDVEVQR----VLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRV 938
Query: 2929 IWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLR 3108
+ N+Q+IF VD K +L+ ++ GV+ L K+L IV G+ ++K+AQ NAT+L L+R
Sbjct: 939 VQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEAQENATMLFQCLVR 998
Query: 3109 STLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 3288
S TK + + +LN AF+W++GEIE++F +++ PGEMVG +AAQS+GEPATQMTLNT
Sbjct: 999 SRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQSIGEPATQMTLNT 1058
Query: 3289 FHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTL 3468
FHYAGVS+KNVTLGVPRLKEI+NV+K +KTP+LTV+L + A D EKAK V +EHT+L
Sbjct: 1059 FHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPSVAADIEKAKVVQSAIEHTSL 1118
Query: 3469 KKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRT----SPWLLRIELDRKRMV 3636
K VT T IYYDPDP+ TVI ED + V ++ +PD + T SPWLLR+ELDR +M+
Sbjct: 1119 KNVTAATEIYYDPDPRTTVIEEDIDTVDAYFSIPDETVEATLDNQSPWLLRLELDRAKML 1178
Query: 3637 DKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVF 3816
DK+LTM +A +I +G D+ ++++DNA+KL+ R R+ + K EE VD E+D
Sbjct: 1179 DKQLTMSQVAQKISSSYGEDLFVMWSEDNADKLIIRCRVVRDPK--TLEEDVD-AEEDQM 1235
Query: 3817 LRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALL 3996
L+ IE +ML ++L+GI I +V+M + K + G +K+ +W+LETDG L
Sbjct: 1236 LKRIEGHMLDSISLRGIEGIDRVFM----MEHKMSVPDEVTGDYKTKMEWVLETDGINLA 1291
Query: 3997 RVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDV 4176
V++ +DP RT SN E+ VLGIEA R A+ RE+ NVI+FDGSYVNYRH+ALL DV
Sbjct: 1292 EVMAVDGVDPYRTYSNSFVEVLSVLGIEATRSALYREILNVIAFDGSYVNYRHMALLVDV 1351
Query: 4177 MTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLA 4356
MT++G+LMAITRHGINR + GALMRCSFEETV+IL+EAA AE D +GVSENIMLGQLA
Sbjct: 1352 MTSRGYLMAITRHGINRADTGALMRCSFEETVEILLEAAAVAELDDCRGVSENIMLGQLA 1411
Query: 4357 RCGTGCFDLVLDVEKCK---YGMEIPQNVVMGGGFYGSFAGSPSNRE-FSPAHSPWNS-- 4518
GTG F ++LD ++ + G G GS G+ + + SPA+ +
Sbjct: 1412 PLGTGNFGVMLDEDQLSTLPADYSKTAGIAAGHGEMGSADGAATPYDSSSPAYDALQARG 1471
Query: 4519 --GVTPTYAGAAWSP-TTGGMSPGAGFSPAGNTDGGA----SPFNEGG------------ 4641
V + G + +P +GG S GF G+ G A SPF+ G
Sbjct: 1472 GGDVIFSPIGTSGAPEMSGGFSEYGGFGHGGDGSGSAYTPTSPFSSFGAASPGFAATSPS 1531
Query: 4642 WSPASPGDPLGA----LSPRTPSYGGMSPGVYSPSSPQF 4746
+SP+SPG LGA SP +P++ SP YSPSSP +
Sbjct: 1532 YSPSSPGMGLGAASPSFSPSSPAFAATSPS-YSPSSPSY 1569
Score = 51.6 bits (122), Expect = 2e-04
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP + +SP + SP +S
Sbjct: 1573 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1626
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1627 PTSPSYSPTSYSPTSPSYSPTSPS-YSPTSPSY 1658
Score = 41.2 bits (95), Expect = 0.29
Identities = 34/92 (36%), Positives = 44/92 (46%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPS SP++SP +P+Y SPT+ SP SP N S +SP
Sbjct: 1641 SPSYSPTSPSYSP----TSPSY-----SPTSPSYSPS---SPKFNAGASTS------YSP 1682
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP + SP +PSY SP YSP+SP +
Sbjct: 1683 TSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1708
>gi|49074728|ref|XP_401478.1| hypothetical protein UM03863.1 [Ustilago
maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago
maydis 521]
Length = 1774
Score = 1503 bits (3890), Expect = 0.0
Identities = 807/1615 (49%), Positives = 1064/1615 (64%), Gaps = 43/1615 (2%)
Frame = +1
Query: 28 APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVY-ENGKPKLGGLMDPRQGVIDRRGRCMT 204
AP+R V VQFGIL PEEI+ +SV VE PE+ E GKP++GGL DPR G +DR +C T
Sbjct: 14 APIRPVREVQFGILSPEEIRAISVCKVEIPEIKDEAGKPRIGGLSDPRLGTLDRNYKCQT 73
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLE-ILKK 381
C +CPGHFGH++LAKPVFHIG+L K KIL CVCF+CG+L D V + I+K
Sbjct: 74 CGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADTVTDPVFDQIVKA 133
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
T + K+R +++ C K +CE GGCGR QP+ RR
Sbjct: 134 TRGSKKRRFQRVWEYCSKKMICEADDPKDEDEMGFDEQNKPGH----GGCGRVQPNIRRE 189
Query: 562 GIDINAEWKKNVNED--------TQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARP 717
G+ + +WKK ED Q K L A + ++++ DI V+G+ + ARP
Sbjct: 190 GLKLFTQWKKGKGEDEDGEENAIAQAEKRPLPASEAHTILKKMSSHDIAVLGLSEENARP 249
Query: 718 EWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTD 897
+WM+ T G +DDLT+KL+D+I+ N L++ E G AH+L D
Sbjct: 250 DWMVLTVLPVPPPPVRPSVQDGG----EDDLTYKLADVIRANATLKKMEQEGTPAHILAD 305
Query: 898 DVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSART 1077
+LLQFH AT +DN I G P A Q GRP+KSI+ RLKGKEGR+RGNLMGKRV+FSART
Sbjct: 306 FEQLLQFHCATFMDNDIAGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVNFSART 365
Query: 1078 VITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGA 1245
VIT DP L +D VGVP++IA+NLT+PE VTP+N L ELV G YPGAK + G
Sbjct: 366 VITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDYPGAKYVIRDTGE 425
Query: 1246 RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMN 1425
R+DL+Y+ R +D+ LQPG+ VERH+KDGD I+FNRQP+LHKMSMM HR+K++ +STFR+N
Sbjct: 426 RIDLKYN-RRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLN 484
Query: 1426 LSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAV 1605
LSVT PYNADFDGDEMNLH+PQS ETRAE+ +IA VPRQ+++PQANKPVMGIVQDTLC +
Sbjct: 485 LSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGI 544
Query: 1606 RMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRT 1785
R + RD +D+ + +L+++ WDG VP P ILKPKP W+GKQ+ S+ IP +NV
Sbjct: 545 RKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKPYWSGKQILSMCIPKGINVFL- 603
Query: 1786 HSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA 1965
+D G K D V IE+GE++ G++ K VG SAG L+H++ E G +
Sbjct: 604 ------DKDKG-LKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHIIFREKGPVVC 656
Query: 1966 ANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDL 2145
F+S +Q V+N WL+ G +IGIGDT+AD+AT I TI AK V+D I+ A +D L
Sbjct: 657 KRFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTIAAAKAAVMDYIKYARHDWL 716
Query: 2146 EPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVI 2325
+ G TLR++FE VN++LN ARD G+ A+ SL +FNN INISQ+
Sbjct: 717 KVEAGMTLRESFEANVNRVLNQARDDVGNHAETSLPDFNNVKQMVVSGSKGSFINISQMS 776
Query: 2326 ACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 2505
ACVGQQ+VEGKRIPFGFRHR+LPHF KDD+ PES+GFVENSYL GLT EFFFHAM GRE
Sbjct: 777 ACVGQQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGRE 836
Query: 2506 GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 2685
GLIDTAVKTAETGYIQRRL+KA+E VMV YDGTVRNS ++Q YGEDG+DG VE Q
Sbjct: 837 GLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSTNNVIQFAYGEDGIDGAQVETQT 896
Query: 2686 MPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRL 2865
+ T+K N+A F FR+DL D F + + QE +D L++ E++QLE DR L
Sbjct: 897 LLTLKLNDADFRHMFRVDLHDGGFKKGTLRPGLGDWSQELQD---LLDEEFAQLEFDRNL 953
Query: 2866 LR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVS 3042
LR +IF ++ LP N+ RL+ NAQ+IF VD RKP +LSP VI G+R + +LI++
Sbjct: 954 LRHEIFQSDQVQVRLPMNVARLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIR 1013
Query: 3043 GNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPG 3222
G+D IS++AQ NATLL I LRS LC+K + + +N EA++W+LGEIE +F +++A PG
Sbjct: 1014 GDDPISREAQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPG 1073
Query: 3223 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLT 3402
EM G LAAQS+GEPATQMTLNTFHYAGVS+KNVTLGVPRLKEIIN ++ +KTPS+TV+LT
Sbjct: 1074 EMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLT 1133
Query: 3403 GAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD- 3579
++ E AK + L HTTL+ VT ++YDPDP TVI ED+++V F+ +PD +
Sbjct: 1134 EQYSQSQESAKVIQTALAHTTLQTVTSAVEVHYDPDPSATVIEEDKDFVEAFFAIPDEEV 1193
Query: 3580 ---LSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 3750
L R SPWLLR+ELDR +M+DK LTM +A +I FG D+ ++++DNAE L+ R+R
Sbjct: 1194 EASLERQSPWLLRLELDRAQMLDKNLTMADVASKISAMFGQDIFVMHSEDNAENLILRIR 1253
Query: 3751 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 3930
+ D E+ + E+++FL+ + + ML+++ L+GI I KVY+ Q D+K R +
Sbjct: 1254 VVDND-----PEKEAQGEEEIFLKNLASQMLAEIDLKGIKGIRKVYIVQ--QDNKTRRVD 1306
Query: 3931 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 4110
G +++V++W+LETDG+ L VL+ +D +RT+ N+ E+F V GIEA R ++ RE
Sbjct: 1307 PITGDWRTVSEWVLETDGSNLAEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSLLRET 1366
Query: 4111 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 4290
VI FDGSYVNYRHLALLCD+MT++G LMAITRHGINR GALMRC+FEETV++L+EA
Sbjct: 1367 RAVIEFDGSYVNYRHLALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVELLIEA 1426
Query: 4291 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK---YGMEIPQNVVMGGGFYGS 4461
A + D KGV++N++LGQ+A GTG FDL LD+E K +P + ++ +
Sbjct: 1427 ASMGDVDDCKGVAQNVLLGQMAPMGTGAFDLNLDLEMLKDTIVNHALPYDTLLASRSLDA 1486
Query: 4462 FAG-SPSNREFSPAHSPWNSGVTPTYAGAAWSP--TTGGMSPG------AGFSPAGNTDG 4614
G +P + SP + + A +SP TGG G +G SP G
Sbjct: 1487 AGGKTPGAMTPYDSSSPASDDAFRVHEQAMFSPLAQTGGDEGGYNDYLLSGTSPMRTPLG 1546
Query: 4615 GASPFNEG------GWSPASPG------DPLGALSPRTPSYGGMSPGVYSPSSPQ 4743
SP G G+ P SPG LG +SP T + G SP YSP+SP+
Sbjct: 1547 AQSPAGYGFSPVSPGYVPTSPGYATSPAGALGGMSPWTGNMGATSP-AYSPTSPR 1600
Score = 51.6 bits (122), Expect = 2e-04
Identities = 36/92 (39%), Positives = 45/92 (48%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SP+ SPA++P + +PT SP G G GFSP SP +SP
Sbjct: 1662 SPNYSPASPAYTPTSPVYSPT------SPAMAGRGGGKGFSPTSPAYSPTSP----QYSP 1711
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
ASP A SP +P Y SP YSP+SPQ+
Sbjct: 1712 ASP-----AFSPTSPQYSPASP-QYSPTSPQY 1737
Score = 46.2 bits (108), Expect = 0.009
Identities = 44/117 (37%), Positives = 54/117 (45%), Gaps = 23/117 (19%)
Frame = +1
Query: 4465 AGSPSNREFSPAHSPWNSGVTPTYAGAAWSPT--TGGMSPGAG--------FSPA----- 4599
A SP+ FSP + G PT G A SP GGMSP G +SP
Sbjct: 1547 AQSPAGYGFSPV----SPGYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIF 1602
Query: 4600 -GNTDGGASPFNEGGWSPASPG----DPLGA-LSPRTPS--YGGMSPGVYSPSSPQF 4746
G T SP + +SPASP P GA SP +P+ YG + YSP+SP+F
Sbjct: 1603 GGATSPSYSPTSPS-YSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKF 1658
Score = 43.5 bits (101), Expect = 0.058
Identities = 32/85 (37%), Positives = 44/85 (51%)
Frame = +1
Query: 4492 SPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPL 4671
SPA+SP +P G A SP+ SP +SPA +SP G+SP+SP
Sbjct: 1591 SPAYSP----TSPRIFGGATSPSYSPTSPS--YSPASPNYSPSSPAG-AGYSPSSPAGRY 1643
Query: 4672 GALSPRTPSYGGMSPGVYSPSSPQF 4746
GA + +P Y SP +SP+SP +
Sbjct: 1644 GAAT--SPQYSPASPK-FSPTSPNY 1665
>gi|50310581|ref|XP_455310.1| unnamed protein product [Kluyveromyces
lactis]
gi|49644446|emb|CAG98018.1| unnamed protein product [Kluyveromyces
lactis NRRL Y-1140]
Length = 1720
Score = 1493 bits (3866), Expect = 0.0
Identities = 796/1608 (49%), Positives = 1064/1608 (65%), Gaps = 31/1608 (1%)
Frame = +1
Query: 16 VDF---QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGVI 180
VDF APLR + VQFG+ PEE++ +SVA +EFPE + K K+GGL DPR G I
Sbjct: 2 VDFPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSI 61
Query: 181 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 360
DR +C TC + +CPGHFGH+ELAKPVFHIGFL+K K+ VC +CG+LL+D+ +
Sbjct: 62 DRNYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQ 121
Query: 361 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRY 540
+ + +K + K+R ++ LCKAK VCE GGCG
Sbjct: 122 MRQAIKIK--DPKRRFNAVWTLCKAKMVCETEVPSPDDPTVFLSR---------GGCGHI 170
Query: 541 QPSYRRVGIDINAEWKKNVNEDT--QERKIMLTAERVLEVFQQITDEDILVIGMDPQFAR 714
QPS R+ G+ + WKK+ N D Q K +++AE +L VF+ I+ ED +G + F+R
Sbjct: 171 QPSIRKDGLSLVGTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSR 230
Query: 715 PEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLT 894
PEWMI T S + +DDLT+KL DI+K N +Q+ E NG+ HV+
Sbjct: 231 PEWMILTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQ 290
Query: 895 DDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSAR 1074
+ LLQFHVAT +DN I G P A QK GRP+KSI+ RLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 ESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 1075 TVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENG 1242
TVI+ DPNL +D VGVP++IA+ LT+PE+VTP+N+D+L +LV G ++PGAK E+G
Sbjct: 351 TVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESG 410
Query: 1243 ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRM 1422
R+DLRY RA D+ LQ G++VERH+ D D ++FNRQP+LHKMSMM HRVK++P+STFR+
Sbjct: 411 DRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRL 470
Query: 1423 NLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCA 1602
NLSVTSPYNADFDGDEMNLH+PQS ETRAE+ ++ VP Q+++PQ+NKP MGIVQDTLC
Sbjct: 471 NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 530
Query: 1603 VRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLR 1782
+R MT RD FI+ ++++L ++P WDG +P PAILKP PLW+GKQV S+ IP +++ R
Sbjct: 531 IRKMTLRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSMAIPNGIHLQR 590
Query: 1783 THSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEI 1962
D G ++SP D ++I G+++ G+V KTVG S+G L+HVVT E G EI
Sbjct: 591 F--------DDGT-TFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEI 641
Query: 1963 AANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDD 2142
A +S+IQ V+N WL+ G +IGIGDTIAD+ T +I I AK+ V DV ++A +
Sbjct: 642 CARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANL 701
Query: 2143 LEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQV 2322
L G TLR++FE+ V + LN+ARD+ G SA+ +L + NN INI+Q+
Sbjct: 702 LTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQM 761
Query: 2323 IACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGR 2502
ACVGQQ+VEGKRI FGF RTLPHF KDDY PESKGFVENSYL GLTP EFFFHAMGGR
Sbjct: 762 SACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGR 821
Query: 2503 EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQ 2682
EGLIDTAVKTAETGYIQRRL+KA+E +MV+YDGT RNSL ++Q YGEDG+D +E Q
Sbjct: 822 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQ 881
Query: 2683 NMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRR 2862
++ T+ +++ FER +R+DL + ++ + EI L+ E+ QL +DR+
Sbjct: 882 SIDTIPGSDSAFERRYRIDLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDRQ 941
Query: 2863 LLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVS 3042
+LR++F G+ LP N++R+I N+Q+ F++D KP +L+ VISGVR+L +KL++V
Sbjct: 942 ILRRVFVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVR 1001
Query: 3043 GNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPG 3222
G +I K+AQ NA L LLRS L T+ + + +LN + FDW+L IE++F ++I PG
Sbjct: 1002 GKSDILKEAQQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPG 1061
Query: 3223 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLT 3402
EMVG LAAQS+GEPATQMTLNTFH+AGV++K VT GVPRLKEI+NV+K +KTPSLTV+L
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLD 1121
Query: 3403 GAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDL 3582
A D EKAK++ +EHTTLK VT + IYYDPDP++TVI +DEE + + + + D +
Sbjct: 1122 PEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEET 1181
Query: 3583 SRT----SPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 3750
++ SPWLLR+ELDR M DK LTM + ++I F ND+ I+++DNAEKL+ R R
Sbjct: 1182 EKSLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCR 1241
Query: 3751 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 3930
+ + K + + E+D L+ IE +ML +TL+G+ I++V M + + R +
Sbjct: 1242 VIRDPKTLDADVEA---EEDHMLKKIENSMLEKITLRGVEDITRVVMMKYD-----RKVP 1293
Query: 3931 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 4110
+ G + V +W+LETDG L V++ +D R +N +I VLGIEA R A+ RE+
Sbjct: 1294 SETGEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREV 1353
Query: 4111 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 4290
NVI+ DGSYVNYRH+ALL DVMT++G LM++TRHG NR + GALMRCSFEETV+IL EA
Sbjct: 1354 YNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEA 1413
Query: 4291 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK-CKY---GMEIPQNVVMGGGFYG 4458
AE D +GVSEN++LGQ+A GTG FD+++D E KY E+ GG
Sbjct: 1414 GAAAELDDCRGVSENVILGQMAPIGTGAFDVMIDDESLVKYMPEHKEVKTEGQEGGATPY 1473
Query: 4459 SFAGSPSNRE--------FSPAHSPWN----SGVTPTYAGAAWSPTTGGMSPGAGFSPAG 4602
S +N E FSP +G Y GA + T SP +G+ G
Sbjct: 1474 SNESGLANAEINVKDELMFSPLVESGGADALAGGFTAYGGADYGSAT---SPFSGYG-NG 1529
Query: 4603 NTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
T G + G+SP SPG SP +PSY SP YSP+SP +
Sbjct: 1530 PTSPGFGEVSSPGFSPTSPG-----YSPTSPSYSPTSPS-YSPTSPSY 1571
Score = 50.8 bits (120), Expect = 4e-04
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1670
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SPQ+
Sbjct: 1671 PTSP-----SYSPTSPSYSPTSPS-YSPTSPQY 1697
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1554 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1607
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1608 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1634
Score = 47.0 bits (110), Expect = 0.005
Identities = 33/92 (35%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP + +SP + SP +S
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1684
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQ 4743
P SP + SP +P Y SPG YSP+ P+
Sbjct: 1685 PTSP-----SYSPTSPQY---SPGSYSPAEPK 1708
>gi|45187959|ref|NP_984182.1| ADR086Cp [Eremothecium gossypii]
gi|44982743|gb|AAS52006.1| ADR086Cp [Eremothecium gossypii]
Length = 1745
Score = 1487 bits (3850), Expect = 0.0
Identities = 793/1614 (49%), Positives = 1064/1614 (65%), Gaps = 37/1614 (2%)
Frame = +1
Query: 16 VDF---QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGVI 180
VDF APLR + VQFG+ PEE++ +SVA +EFPE + + K+GGL DPR G I
Sbjct: 2 VDFPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSI 61
Query: 181 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 360
DR +C TC + DCPGHFGH+ELAKPVFHIGF++K K+ CVC +CG+LL+D+
Sbjct: 62 DRNFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNEL 121
Query: 361 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRY 540
+ + +K + K+R ++ LCKAK VC+ GGCG
Sbjct: 122 MRQAIKIK--DPKRRFNAVWSLCKAKMVCDTEVPSEDDPSKYISR---------GGCGNA 170
Query: 541 QPSYRRVGIDINAEWKKNVNEDT--QERKIMLTAERVLEVFQQITDEDILVIGMDPQFAR 714
QPS R+ G+ + WKK+ N + Q K +++AE +L VF+ I+ ED +G + F+R
Sbjct: 171 QPSIRKDGLSLVGTWKKDKNAEDADQPEKRIISAEEILNVFKHISPEDSWRLGFNEDFSR 230
Query: 715 PEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLT 894
PEWM+ T S + +DDLT+KL DI+K N +QR E NG+ HV+
Sbjct: 231 PEWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQ 290
Query: 895 DDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSAR 1074
+ LLQFHVAT +DN I G P A QK GRP+KSI+ RLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 291 ESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 1075 TVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENG 1242
TVI+ DPNL +D VGVP++IA+ LT+PE+VTP+N+D+L +LV G ++PGAK +NG
Sbjct: 351 TVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNG 410
Query: 1243 ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRM 1422
R+DLRY RA D+ LQ G++VERH+ D D ++FNRQP+LHKMSMM HRVK++P+STFR+
Sbjct: 411 DRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRL 470
Query: 1423 NLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCA 1602
NLSVTSPYNADFDGDEMNLH+PQS ETRAE+ ++ VP Q+++PQ+NKP MGIVQDTLC
Sbjct: 471 NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 530
Query: 1603 VRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLR 1782
+R MT RD FI+ ++++L ++P WDG +P P ILKPKPLW+GKQ+ S+ IP +++ R
Sbjct: 531 IRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILKPKPLWSGKQLLSMAIPSGIHLQR 590
Query: 1783 THSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEI 1962
D G ++SP D ++I G+++ G+V KTVG S+G L+HVVT E G E+
Sbjct: 591 F--------DEGT-TYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEV 641
Query: 1963 AANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDD 2142
A + +IQ V+N WL+ G +IGIGDTIAD+ T +I + I AK+ V +V ++A +
Sbjct: 642 CAKLFGNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANL 701
Query: 2143 LEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQV 2322
L G TLR++FE+ V + LN+ARD+ G SA+ +L + NN INI+Q+
Sbjct: 702 LTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQM 761
Query: 2323 IACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGR 2502
ACVGQQ+VEGKRI FGF RTLPHF KDDY PESKGFVENSYL GLTP EFFFHAMGGR
Sbjct: 762 SACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGR 821
Query: 2503 EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQ 2682
EGLIDTAVKTAETGYIQRRL+KA+E +MV+YDGT RNSL ++Q YGEDG+D +E Q
Sbjct: 822 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQ 881
Query: 2683 NMPTMKPNNAVFERDFRMDLTD-NKFLRKNYSE---DVVREIQESEDGISLVESEWSQLE 2850
++ T+ ++ FE+ +R+DL + N L N E ++V +++ +L++ E+ QL
Sbjct: 882 SIDTIPGSDLAFEKRYRIDLLNPNYALDPNLLESGTEIVGDLKLQ----NLLDEEYKQLV 937
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 3030
+DR LRKIF G+ LP N++R+I NAQ+ F++D KP +LS V+ GVR L ++L
Sbjct: 938 QDRHFLRKIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQERL 997
Query: 3031 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 3210
+++ G +I ++AQ NA L LLRS L T+ + T+ +L + F+W+L IE++F ++I
Sbjct: 998 LVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFLRSI 1057
Query: 3211 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 3390
PGEMVG LAAQS+GEPATQMTLNTFH+AGV++K VT GVPRLKEI+NV+K +KTPSLT
Sbjct: 1058 VHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLT 1117
Query: 3391 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 3570
V+L + A D EKAK + +EHTTLK V + IYYDPDP +TVI EDEE + + + +
Sbjct: 1118 VYLEESYATDQEKAKLIRSAIEHTTLKSVPVASEIYYDPDPSSTVIEEDEEIIQLHFSLM 1177
Query: 3571 DHD----LSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLV 3738
D + L SPWLLR+ELDR M DK LTM + ++I F ND+ I+++DNAEKL+
Sbjct: 1178 DEETEASLKHQSPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLI 1237
Query: 3739 FRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 3918
R R+ + K E + E+D L+ IE ML +TL+G+ I++V M + +
Sbjct: 1238 IRCRVVRDPKTLDAEAEA---EEDHMLKKIENTMLESITLRGVQDITRVVMMKYD----- 1289
Query: 3919 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 4098
R + + G + + +W+LETDG L V+S +DP R +N +I VLGIEA R A+
Sbjct: 1290 RKVPSETGEYHKIPEWVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAAL 1349
Query: 4099 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 4278
+E+ NVI+ DGSYVNYRH+ALL DVMT++G LM++TRHG NR + GALMRCSFEETV+I
Sbjct: 1350 YKEVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEI 1409
Query: 4279 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK-CKYGMEIPQNVVM----- 4440
L EA AE D GVSEN++LGQ+A GTG FD+++D E KY E + +
Sbjct: 1410 LFEAGAAAELDDCSGVSENVILGQMAPIGTGSFDVMIDDESLIKYMPEQKLSTAVEVNDG 1469
Query: 4441 GGGFYGSFAGSPSNR-------EFSP-----AHSPWNSGVTPTYAGAAWSPTTGGMSPGA 4584
G Y S AG + + FSP SG Y GA + G SP +
Sbjct: 1470 GATPYNSDAGLVNTKVDIKDELMFSPLVEAGTSDAIASGGFTAYGGADYG---GATSPFS 1526
Query: 4585 GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
G+ G T G + G+SP SP A SP +PSY SP YSP+SP +
Sbjct: 1527 GYG-NGPTSPGFGDVSSPGFSPTSP-----AYSPTSPSYSPTSPS-YSPTSPSY 1573
Score = 50.8 bits (120), Expect = 4e-04
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1693
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SPQ+
Sbjct: 1694 PTSP-----SYSPTSPSYSPTSPS-YSPTSPQY 1720
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1672
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1673 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1699
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1626 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1679
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1680 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1706
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1556 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1609
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1610 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1636
>gi|12642614|gb|AAK00311.1| DNA-dependent RNA polymerase II largest
subunit RPB1 [Monosiga brevicollis]
Length = 1743
Score = 1487 bits (3849), Expect = 0.0
Identities = 798/1550 (51%), Positives = 1031/1550 (66%), Gaps = 43/1550 (2%)
Frame = +1
Query: 226 CPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKR 405
CPGHFGH+ LAKPVFH GFL K + +LRCVC YC +L ++ S ++ IL +T N K R
Sbjct: 1 CPGHFGHIVLAKPVFHAGFLPKIISVLRCVCLYCSKLRVEHSDQQLQAILSQTKDNPKHR 60
Query: 406 LTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVG-----ID 570
L + LC K C AGGCG+ QP RR +
Sbjct: 61 LQAVSRLCSNKRQCHRDEPPDTFNPEGQPEVALS----AGGCGKMQPRVRRSQEEGRTLQ 116
Query: 571 INAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXX 750
+ EW++ VN+D +RK +TA VL+ F+ I+DED +IG DP + RP++MI
Sbjct: 117 LLGEWEE-VNDDEVDRKRPITAAEVLKCFRGISDEDCRIIGFDPVYTRPDFMIIEVLPVP 175
Query: 751 XXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVAT 930
S + DDLT++L DIIKTN LQ N ANGA H++ + V +QF VAT
Sbjct: 176 PLAVRPSVELGESGHSADDLTYQLGDIIKTNISLQENIANGATPHMIEECVEYIQFKVAT 235
Query: 931 LVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPID 1110
L+DN +P +P + Q+ GRP+K+I QRLKGKEGR+RGNLMGKRVDFSARTVIT DPNL ID
Sbjct: 236 LMDNNLPHMPQSQQRSGRPIKAISQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLAID 295
Query: 1111 TVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAA 1278
VGVPRT+A LT PE VT FN++K+ + V G TQ+PGA+ E+G R+DL +
Sbjct: 296 QVGVPRTVAAKLTVPERVTNFNLNKMNQYVANGPTQHPGARYIIQEDGTRIDLHIARSHS 355
Query: 1279 DLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADF 1458
D LQPG+ VERH++D D+I+FNRQPTLHKMSMMGHRVK+LPWSTFRMNLSVTSPYNADF
Sbjct: 356 DRTLQPGFIVERHLQDNDVIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADF 415
Query: 1459 DGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 1638
DGDEMNLH+PQSL +RAEIEEI MV + ++TPQ+N+PVMGI+QDTL R MT RD FI+
Sbjct: 416 DGDEMNLHVPQSLGSRAEIEEIMMVHKNILTPQSNRPVMGIIQDTLTVARRMTFRDCFIE 475
Query: 1639 WPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSG 1818
+M LLM++P WDGK+P PAI+ PK LWTGKQ+ S+IIP +N+ HSTH D D
Sbjct: 476 REQLMHLLMWMPNWDGKIPVPAIVAPKELWTGKQLVSMIIPRRINLEGKHSTHEDKVDRA 535
Query: 1819 -PYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
PY ++ DTKVII G L+SGI+C +G G ++H +T+E G E A FY +IQTV
Sbjct: 536 TPY--LTVHDTKVIISKGVLISGILCKSMLGAKGGGVIHAITVEHGLEEARQFYGNIQTV 593
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
IN WL+ GH+IGIGD +ADQ T I+ ++A + V ++I KA DD++P PGNT+R+
Sbjct: 594 INNWLLIHGHSIGIGDAVADQDTNKRIEELTQEATRSVDELITKAQADDIKPKPGNTVRE 653
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
TFE +VN +LND ++ G SAQ SLS NNF INISQ+IACVGQQNVEG
Sbjct: 654 TFEVEVNTVLNDMVNKAGKSAQNSLSIHNNFKAMSTAGSKGGPINISQIIACVGQQNVEG 713
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGF++RTLPHF+KDDYGP+S+GFV NSY GL+ E FFHAMGGREGLIDTAVKTA
Sbjct: 714 KRIPFGFKYRTLPHFVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLIDTAVKTA 773
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+K+ME + +NYDG++RNS ++QL YGEDG+DG +E Q +PT+ P++
Sbjct: 774 ETGYIQRRLVKSMEGLRLNYDGSIRNSNGDLIQLCYGEDGMDGACLEKQGLPTLTPSDQG 833
Query: 2716 FERDFRMDLTDNKF--LRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRG 2889
FERDF T NK LR+ ++V +I ++ + +E EW +L++DR+ LR +FP+G
Sbjct: 834 FERDFCN--TGNKLASLRQYLVGNIVDDINADDEMLQELEDEWQRLQDDRQFLRSVFPKG 891
Query: 2890 DAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQA 3069
+A +VLP L+RLI +AQK F +D R+P +LSP HV +R + +L+++ G+D +SK A
Sbjct: 892 EADVVLPVQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAIRTFTDRLVVIPGDDPLSKVA 951
Query: 3070 QYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQ 3249
Q NATLL N LRS L ++ + +LN++AFDW+LGE+E RF QA AQPGEMVGALAAQ
Sbjct: 952 QRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQ 1011
Query: 3250 SLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEK 3429
SLGEPATQMTLNTFH AGVSAKNVTLGVPRLKEIINVSK KTPS+ +F+ +D
Sbjct: 1012 SLGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQDRNT 1071
Query: 3430 AKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLR 3609
A VL +EH+TLK + +++IYYDPD N+VI ED E++ Y++ D D+++ W+LR
Sbjct: 1072 AMKVLFSIEHSTLKTIIHSSSIYYDPDEMNSVIPEDREFLE-NYDIGDFDMNKWHRWVLR 1130
Query: 3610 IELDRKRMVDKKLTMEMIADRIHGGFG-------NDVHTIYTDDNAE-KLVFRLRIAGED 3765
EL R+ + +++ E +A I G + V + N E V R+R+ D
Sbjct: 1131 WELSRREINTRRILPENVAKLIKRAMGAVQDTERDTVMVHFQQGNIEDHTVMRIRLP-RD 1189
Query: 3766 KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYM--NQPNTDDKKRIIITPE 3939
K EA D + D +LR +E +L +TLQGIP I++ Y+ K+RI I E
Sbjct: 1190 KSEAD----DSLGPDAYLRLLEDRILHSITLQGIPDITRGYLVTGDSKQPGKQRIFINEE 1245
Query: 3940 GGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNV 4119
G FK +++ETDG+++ V ++R +D R+TSNDI EIF GIE RKAIE EM NV
Sbjct: 1246 GEFKPQDQFLVETDGSSIQSVFAQRYVDQERSTSNDIVEIFSTFGIEGARKAIEAEMYNV 1305
Query: 4120 ISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVH 4299
ISF GSYVN RHL+LLCD+MT KG+LMAITRHG+NRQ G LM+ SFEETVDIL+EAA H
Sbjct: 1306 ISFGGSYVNARHLSLLCDIMTTKGYLMAITRHGVNRQNTGVLMKASFEETVDILLEAAAH 1365
Query: 4300 AEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPS 4479
E D +KGVSENIMLGQ+ GTGCFDL+LD ++ ++ + + + GG + G +
Sbjct: 1366 GETDYLKGVSENIMLGQVIPGGTGCFDLLLDQDRLQHAVPVEPGL---GGLFAK--GGDA 1420
Query: 4480 NREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSP---AGNTD-GGASPFNEGGWS 4647
N A +PW G + GGM+P SP AG T GG SP G +S
Sbjct: 1421 N----GAATPWGEGNATPFG-------MGGMTPQNASSPYFGAGQTPIGGFSPVVAGAFS 1469
Query: 4648 PA---SPG----DPLGALSP----------RTPSYGGMSPGVYSPSSPQF 4746
P SPG P GA+SP +P Y SP YSP+SP +
Sbjct: 1470 PGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSY 1519
Score = 51.6 bits (122), Expect = 2e-04
Identities = 46/128 (35%), Positives = 63/128 (48%), Gaps = 16/128 (12%)
Frame = +1
Query: 4411 GMEIPQNVVMGGGFY--GSFAG-SPSNREFSPAHSPWNSGVTPTYAG------AAWSPTT 4563
G + VV FY S AG SP+ SP++SP + G++PT G A ++PT+
Sbjct: 1490 GGAMSPGVVSASPFYDPSSPAGYSPT----SPSYSPTSPGMSPTSPGFSPASPAGFTPTS 1545
Query: 4564 GGMSPGA-GFSPAGNTDGGASPFNEGGWSPA-SPGDPL-----GALSPRTPSYGGMSPGV 4722
SP + +SP GGA + SP+ SP P A SP +PSY SP V
Sbjct: 1546 PHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSPTSPNV 1605
Query: 4723 YSPSSPQF 4746
SP+SP +
Sbjct: 1606 KSPTSPGY 1613
Score = 50.8 bits (120), Expect = 4e-04
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SP+ SPA+SP + +PT SPT+ G SP G+SP+ + SP +S
Sbjct: 1581 SPAYNAQSPAYSPTSPSYSPTSPNVK-SPTSPGYSPTSPGYSPSSPSYSPTSP----NYS 1635
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +P+Y SP YSP+SP +
Sbjct: 1636 PTSP-----SYSPTSPNYSPTSPS-YSPTSPNY 1662
Score = 45.8 bits (107), Expect = 0.012
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +1
Query: 4456 GSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFN 4632
G SPS SP +SP + +PT +SPT+ SP +SP + SP
Sbjct: 1619 GYSPSSPSYSPTSPNYSPTSPSYSPT--SPNYSPTSPSYSPTSPNYSPTSPSYSPTSP-- 1674
Query: 4633 EGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP SP + SP +P+Y SP YSP+SP +
Sbjct: 1675 --NYSPTSP-----SYSPTSPNYSPTSPS-YSPTSPNY 1704
Score = 45.4 bits (106), Expect = 0.015
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SPS SP +SP + +PT +SPT+ SP + +SP + SP +S
Sbjct: 1652 SPSYSPTSPNYSPTSPSYSPTSPN--YSPTSPSYSPTSPNYSPTSPSYSPTSP----NYS 1705
Query: 4648 PASPG---DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP G P +P Y SPG YSP+SP +
Sbjct: 1706 PTSPSYSPTANGTSGPTSPGYSPTSPG-YSPTSPGY 1740
Score = 43.5 bits (101), Expect = 0.058
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SP+ SP++SP + +PT ++SPT+ SP + +SP SP +S
Sbjct: 1645 SPNYSPTSPSYSPTSPNYSPT--SPSYSPTSPNYSPTSPSYSPTSPNYSPTSP----SYS 1698
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP +PSY + G P+SP +
Sbjct: 1699 PTSPN-----YSPTSPSYSPTANGTSGPTSPGY 1726
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest
subunit [Cyanidioschyzon merolae]
Length = 1819
Score = 1486 bits (3847), Expect = 0.0
Identities = 800/1658 (48%), Positives = 1069/1658 (64%), Gaps = 85/1658 (5%)
Frame = +1
Query: 28 APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTC 207
A L+ V VQFG+L P+E++R+SV VE+ +E G PK GG++DPR G IDR C TC
Sbjct: 11 AELKAVGAVQFGLLSPDELRRLSVVRVEYDVAFERGVPKAGGVLDPRLGAIDRNFPCATC 70
Query: 208 AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTG 387
G+ DCPGHFGH+EL KPVF++ L+ LK LRCVC+YC RLL+D S R+L +
Sbjct: 71 EGSSIDCPGHFGHIELVKPVFNVLMLSTVLKTLRCVCYYCSRLLVDGSDSRMLRAARIK- 129
Query: 388 TNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG---GCGRYQPSYRR 558
+ KR ++ LC VC G A + GCG QP R
Sbjct: 130 -DPVKRFQAVFQLCNGTRVCGGGADSSEEQLMLPAAVLEARERIGKPREGCGNLQPHVTR 188
Query: 559 VGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
G+ I AE+ + ERK L AERV ++F+ I DED+ ++G P+F+RPEWM+ +
Sbjct: 189 DGLRILAEFP-DAEAFAAERKQELAAERVQQIFRHIRDEDLELLGFHPRFSRPEWMVLSV 247
Query: 739 XXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQF 918
++ +DDLT KL DIIK N LQR EA GA AHV+ + LLQF
Sbjct: 248 LPVPPPHVRPSIQMDAVSRGEDDLTFKLGDIIKANNALQRLEAEGAPAHVIREQYVLLQF 307
Query: 919 HVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPN 1098
HVAT ++N +PG+P AT + GRPLKSI QRLKGKEGR+R NLMGKRV+FSARTVITADP
Sbjct: 308 HVATFMNNDLPGMPRATLRSGRPLKSIAQRLKGKEGRVRNNLMGKRVNFSARTVITADPQ 367
Query: 1099 LPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYH 1266
L +D VGVPR++A LT+PE+VTP+N+D+L E V G YPGA + +G R+ L++
Sbjct: 368 LALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAVRNGPNAYPGALFVIRNDGKRIALQFV 427
Query: 1267 PRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPY 1446
R+AD+ L+PG VERH+ +GD+++FNRQP+LH+MS+MGHRV+ILP+STFRMNLS TSPY
Sbjct: 428 RRSADIVLEPGCVVERHLLNGDLVLFNRQPSLHRMSIMGHRVRILPYSTFRMNLSATSPY 487
Query: 1447 NADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRD 1626
NADFDGDEMNLH+PQS E RAEI+E+ VP+ +++PQAN+PVMGIVQD+L + T RD
Sbjct: 488 NADFDGDEMNLHVPQSEEVRAEIKELMAVPKNIVSPQANRPVMGIVQDSLLGCMLFTLRD 547
Query: 1627 VFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDS 1806
F++ + +LL++LP +DG++P PAILKP+PLWTGKQ+FSL++P VN+ R + HPD
Sbjct: 548 TFLEEDTVFNLLLHLPHFDGRIPAPAILKPRPLWTGKQIFSLLLPDGVNLERLSNGHPDH 607
Query: 1807 EDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHI 1986
E + ++P DT+V+I++GEL++GIV +TVG SAG+L+HV E G E + S I
Sbjct: 608 ERT----IMTPSDTRVLIQNGELITGIVDKRTVGSSAGSLIHVTWKESGPERTSQLISDI 663
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
Q +IN WL++ G +IGIGD IAD T I TI++AK +V +I A LE PG T
Sbjct: 664 QLLINYWLMQNGMSIGIGDCIADAHTMAAINRTIQEAKDEVRQLIRLAQEGRLERQPGKT 723
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
+ ++FE VN++LN ARD+ G AQ+SL NN IN+SQ++ACVGQQN
Sbjct: 724 MLESFEACVNRVLNSARDKAGGFAQESLLPSNNIKRMVSAGSKGSFINVSQIVACVGQQN 783
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
VEGKRIP+GFR RTLPHF+ DD PE++GFVENSYL GLTP E FFHAMGGREGLIDTAV
Sbjct: 784 VEGKRIPYGFRRRTLPHFVVDDLSPEARGFVENSYLRGLTPEEVFFHAMGGREGLIDTAV 843
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPN 2706
KTAETGYIQRRL+KAME + + YDGTVRNSL ++Q YG+D DG +E Q + ++ +
Sbjct: 844 KTAETGYIQRRLMKAMEDIRIEYDGTVRNSLGDVMQFLYGDDAADGAMLEVQELRLVRAS 903
Query: 2707 NAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPR 2886
N E FR+D+ D F D++ ++ + +E E+ QL DR L +FP
Sbjct: 904 NQEMEALFRLDVYDRDFGLGYIEPDLIDAVRTDPEVALELEEEYQQLLADREQLCAVFPT 963
Query: 2887 GDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQ 3066
G+AK L N+QRLI N + IF + +L P +I GVR L ++ ++V G+DE+S++
Sbjct: 964 GEAKWPLMVNVQRLIQNCRSIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDDELSRE 1023
Query: 3067 AQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAA 3246
AQ NA LL +R+ L TK + +LNS+AF WLLGEIE+RF +A A PGEMVGA+AA
Sbjct: 1024 AQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMVGAVAA 1083
Query: 3247 QSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPE 3426
QSLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+INV++ KTPS+TV+L + KD E
Sbjct: 1084 QSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQAKTPSVTVYLK--SGKDKE 1141
Query: 3427 KAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDH--DLSRTSPW 3600
A V +LE L+ V ++AIY+DPDP NTV+ D EWV ++++PD R SPW
Sbjct: 1142 LANIVQSELEQCRLRDVVESSAIYFDPDPANTVVEADREWVRDYFDLPDEMDRPERLSPW 1201
Query: 3601 LLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGED--KG- 3771
LLRI L + M+DK+L + +A R+ FG D+ +Y+DDNAE+LV +R+AG++ KG
Sbjct: 1202 LLRIVLSTEMMIDKRLRLSDVARRLRAEFGGDLSVVYSDDNAEQLVMHIRMAGDEYEKGA 1261
Query: 3772 --------------------------------EAQEEQVDKMEDDVFLRCIEANMLSDLT 3855
EA + + +DDVFL+ IE +L D+
Sbjct: 1262 LGVPILGESERLDDTLNLLGPGDMTAGGNQSLEALDSGTVEEQDDVFLKRIELALLEDMQ 1321
Query: 3856 LQGIPAISKVYMNQPNTDDKKRIIITPEGG-FKSVADWILETDGTALLRVLSERQIDPVR 4032
L+GIP I KV++ Q +R++ PE G F+S +W+L+T+GTALL VLS +D R
Sbjct: 1322 LKGIPGIRKVFLRQT-----QRVLFDPEAGSFRSAPEWVLDTEGTALLAVLSHPDVDARR 1376
Query: 4033 TTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 4212
T SN+I E+ +VLGIEA R+A+ EM V+SFDGS V YRHLALL +VMT +G L+ ++R
Sbjct: 1377 TISNEITEVLQVLGIEAARQALYNEMYAVLSFDGSSVGYRHLALLVEVMTCRGMLIPVSR 1436
Query: 4213 HGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLD 4392
GINR E G LMRC+FEETV+IL AA D +GVS+ ++LGQ A+ GTG F L LD
Sbjct: 1437 FGINRLETGPLMRCTFEETVEILATAATFGVRDACEGVSQAVILGQRAKVGTGAFSLTLD 1496
Query: 4393 VE-----KCKYGMEIPQNVVMGGGFYGSFAGSPSNRE-FSPAHSPWNSGVTPTYA----G 4542
+ + + ++ +GG F ++A + + + ++PA++P G TP A
Sbjct: 1497 ESVLNQAETETSVAAVRDAHVGGVFAKAYAAADVDADHWTPAYTP---GATPGMASDGFA 1553
Query: 4543 AAWSPTT------GGMSPGAGFSPAGNTD--------------GGASPF-------NEGG 4641
A W+P+ G SP GFSPA +T GG SPF
Sbjct: 1554 APWTPSLNLASPYGSFSPAVGFSPATSTYVGGDAMKDAGRYGLGGTSPFASFSASATTPN 1613
Query: 4642 WSPASPG---DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
W+P+ G LGA SP +P+Y SP + SP+SP +
Sbjct: 1614 WAPSPAGGGTGTLGAFSPSSPAYSPTSPRLVSPTSPAY 1651
Score = 46.6 bits (109), Expect = 0.007
Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SP+ SPA+SP + +PT A+SPT+ SP +SP +SP +S
Sbjct: 1648 SPAYSPTSPAYSPTSPAYSPT--SPAYSPTSPAYSPTSPAYSPTSPAYSPSSP--NVAYS 1703
Query: 4648 PA------SPGDPLGALSPRTP--SYGGMSPGV-YSPSSP 4740
P+ SP P A SP +P +Y SP V YSPSSP
Sbjct: 1704 PSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSP 1743
Score = 46.2 bits (108), Expect = 0.009
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SP+ SPA+SP + +P+ A+SP+ SP +SP+ + +SP
Sbjct: 1676 SPAYSPTSPAYSPTSPAYSPSSPNVAYSPS----SPNVAYSPSSPNVAYSPSSPNVAYSP 1731
Query: 4651 A------SPGDPLGALSPRTP--SYGGMSPGV-YSPSSP 4740
+ SP P A SP +P +Y SP V YSPSSP
Sbjct: 1732 SSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSP 1770
Score = 44.3 bits (103), Expect = 0.034
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGV--TPTYAGAAWSPTTGGM-----SPGAGFSPAGNTDGGASPF 4629
SP+ SPA+SP + V +P+ A+SP++ + SP +SP+ +
Sbjct: 1683 SPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSS 1742
Query: 4630 NEGGWSPASPG------DPLGALSPRTPS--YGGMSPGVYSPSSP 4740
+SP+SP P A SP +P+ Y SP YSPSSP
Sbjct: 1743 PNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPVAYSPSSP 1787
Score = 43.5 bits (101), Expect = 0.058
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SP+ SPA+SP + +PT SP SP +SP+ + +SP
Sbjct: 1669 SPAYSPTSPAYSPTSPAYSPT------SPAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSP 1722
Query: 4651 A------SPGDPLGALSPRTP--SYGGMSPGV-YSPSSP 4740
+ SP P A SP +P +Y SP V YSPSSP
Sbjct: 1723 SSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSP 1761
>gi|12642612|gb|AAK00310.1| DNA-dependent RNA polymerase II largest
subunit RPB1 [Glaucosphaera vacuolata]
Length = 1746
Score = 1477 bits (3823), Expect = 0.0
Identities = 793/1650 (48%), Positives = 1083/1650 (65%), Gaps = 77/1650 (4%)
Frame = +1
Query: 28 APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTC 207
A ++ V VQFG+L P+EI+RMSV ++F +E GKPK GLMDPR G I R C TC
Sbjct: 12 AEVKKVKAVQFGVLSPDEIRRMSVCEIKFETAFEMGKPKTEGLMDPRLGAIGRDLPCKTC 71
Query: 208 AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTG 387
+ +CPGHFGH+EL KP+F+IGF TL++LRCVCF+C +LLID P+ +KK
Sbjct: 72 HCDEKNCPGHFGHIELVKPMFNIGFFGMTLRVLRCVCFFCSKLLIDPRDPKADFEVKKVL 131
Query: 388 T--NSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
N RL + +LC +C+ C QP + +
Sbjct: 132 RIKNRINRLKKVQNLCSKVKICKH-------------------------CSNEQPKFAKE 166
Query: 562 GIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXX 741
G+ AE+K + +DT E+K +++AE+VL +F+ I+D+DI ++G+ PQ +RPEW I T
Sbjct: 167 GLQFRAEFKGSA-DDTMEKKQIVSAEKVLSIFKHISDDDIEIMGLSPQHSRPEWFILTLF 225
Query: 742 XXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFH 921
S + +DDLT+KL DI++ N L+ E GA AH L + + +LQ H
Sbjct: 226 PVPPPHIRPSVMMDASMRGEDDLTYKLGDIVRNNNALREMERTGAPAHRLNEQIHVLQAH 285
Query: 922 VATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 1101
+ T+++N +PG+P A QK GRP+KSI QRLKGKEGR+RGNLMGKRVDFS RTVI+ DPNL
Sbjct: 286 IITIMNNDLPGMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGKRVDFSGRTVISPDPNL 345
Query: 1102 PIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKE----NGARVDLRYHP 1269
+D VGVP+TIA NLT+PE+VTPFNV+K++ LV G +YPGAK +G++V+L +
Sbjct: 346 RLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAKYIERLDGSKVNLAFVK 405
Query: 1270 RAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYN 1449
+D+HL G +V RH+ DGD ++FNRQP+LHKMS+MGHRVK++ +S+FR+NLS TSPYN
Sbjct: 406 NRSDIHLNNGEKVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVMRYSSFRLNLSCTSPYN 465
Query: 1450 ADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 1629
ADFDGDEMNLH+PQS + RAE+ ++ MVPR +++PQ NKPVMGIVQDTL + T+RD
Sbjct: 466 ADFDGDEMNLHVPQSPQARAEVMQLMMVPRCIVSPQGNKPVMGIVQDTLVGTMLFTQRDT 525
Query: 1630 FIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSE 1809
F++ +M+LL++ WDG +P PAILKP+ LWTGKQ+FS+I+P +VN++R +TH D +
Sbjct: 526 FMEKDLVMNLLLHFRGWDGVIPPPAILKPRQLWTGKQLFSMILP-DVNLVRFSNTHDDDD 584
Query: 1810 DSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQ 1989
+ GDTKV+I GELLSG V +TVG +A +L+HV E G E A + S+IQ
Sbjct: 585 IE------NAGDTKVLISRGELLSGTVDKRTVGSAANSLVHVTWKEHGPEGACDLISNIQ 638
Query: 1990 TVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTL 2169
T++N WL++ G +IGIGDTIAD+ T ++ I KAK++V ++ KA +L+ PG T+
Sbjct: 639 TLVNHWLLQRGFSIGIGDTIADEQTRFNVIEIINKAKEEVKRLVRKAQEGELQLLPGKTM 698
Query: 2170 RQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNV 2349
++FE VN++LN ARD++GS AQKSL + NN INISQ+ ACVGQQNV
Sbjct: 699 MESFETGVNKVLNGARDKSGSDAQKSLLKTNNIKRMVNAGSKGSFINISQICACVGQQNV 758
Query: 2350 EGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 2529
EGKRI +GFR RTLPHF+ DD GPES+GFVENSYL GLT +EFFFHAMGGREGLIDTAVK
Sbjct: 759 EGKRISYGFRRRTLPHFVLDDLGPESRGFVENSYLRGLTATEFFFHAMGGREGLIDTAVK 818
Query: 2530 TAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNN 2709
T+ETGYIQRRLIKA+E VMV YDGTVRNS +VQ YGEDG+DG VE+QN+ T+ N+
Sbjct: 819 TSETGYIQRRLIKALEDVMVKYDGTVRNSTGLIVQFLYGEDGMDGAMVEDQNLRTLSMND 878
Query: 2710 AVFERDFRMDLTDNKF----LRKNY-SEDVVREIQESEDGISLVESEWSQLEEDR-RLLR 2871
A E+ F +D D F R++Y +++V+ +++ I +E E++Q++ DR RL R
Sbjct: 879 AKLEQTFHLDPFDLDFGIGENRRSYLAQEVIDDVRNDPQLIKALEDEFAQIKLDRDRLQR 938
Query: 2872 KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVREL----------- 3018
+I ++K L N+ RLIWN + +F + +L+P ++ GV+ L
Sbjct: 939 EIIRSRESKWPLAVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPP 998
Query: 3019 -SKKLIIVSGNDEISK------------QAQYNATLLMNILLRSTLCTKNMCTKSKLNSE 3159
S KL+ D++++ +AQ NATLL +I +R+ L +K + + +L+ +
Sbjct: 999 KSIKLLDEGDGDQVAEVDTNSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKK 1058
Query: 3160 AFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR 3339
AF LLGEIE+RF A PGEM+GA+A QS+GEPATQMTLNTFH+AGVSAKNVTLGVPR
Sbjct: 1059 AFMHLLGEIENRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPR 1118
Query: 3340 LKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKN 3519
LKEIINV+K KTPSLTV+L G AA+D E+AK V +L+HTTL VT +T IYYDP+P++
Sbjct: 1119 LKEIINVAKHCKTPSLTVYLRGEAARDAERAKQVQAELQHTTLNHVTQSTEIYYDPNPQD 1178
Query: 3520 TVIAEDEEWVSIFYEMPDHDLS--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN 3693
TVI D+E V +YE+PD + S SPWLLR+ L ++ M D+KL+M + ++IH G
Sbjct: 1179 TVIEADQELVRSYYELPDDENSSANLSPWLLRLNLSKEMMTDRKLSMNHVKNKIHHDLGG 1238
Query: 3694 DVHTIYTDDNAEKLVFRLRIAGEDKGEAQ---EEQVDKMEDD--VFLRCIEANMLSDLTL 3858
DV+ + ++DN LV R+RIA + + E EE + E+D +FLR +E ++LS++ L
Sbjct: 1239 DVNVMASEDNDANLVLRIRIAAQKEPEKMAEGEEHAQEEEEDECLFLRKVEGSLLSEMNL 1298
Query: 3859 QGIPAISKVYMNQPNTDDKKRIIITPE-GGFKSVADWILETDGTALLRVLSERQIDPVRT 4035
G+P I KVYM + + RI+ P GG +W+L+TDGT LL V+S + +D RT
Sbjct: 1299 GGVPDIKKVYMREAD-----RIVPDPRTGGLSVEKEWVLDTDGTNLLAVMSHKDVDYTRT 1353
Query: 4036 TSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 4215
SND+ E+F LGIE VR A+ E+ VISFDG+YVNYRHLA+L D+MT +GH+M+ITRH
Sbjct: 1354 VSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHLAILADIMTCRGHIMSITRH 1413
Query: 4216 GINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDV 4395
GINR E GALMRCSFEET DIL+EAA++ E D +KGV+ENIMLGQ+A GTG F L+L+
Sbjct: 1414 GINRVETGALMRCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTGEFGLLLNE 1473
Query: 4396 EKCK--------------------YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWN 4515
+ K +G + P+ G + +P S ++P
Sbjct: 1474 KALKNLITAEEDARTPRAGLMSPAHGFDTPR--AFDAGSMTPYPATPGQATPSYPYTPIG 1531
Query: 4516 SGVTP----TYAGAAWSPTTGGMSPGAGFSPAGNT-DGGASPFNEGG---WSPASPGDPL 4671
+P Y AA+SPT + + + A + + ASP++ G +SP SP P
Sbjct: 1532 GQFSPFAASPYGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSPRSPSSPG 1591
Query: 4672 G-----ALSPRTPSYGGMSPGVYSPSSPQF 4746
G SP +P+Y SP YSP+SP +
Sbjct: 1592 GVAASPGYSPTSPTYSPTSPS-YSPTSPSY 1620
Score = 48.9 bits (115), Expect = 0.001
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +1
Query: 4465 AGSPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSP----GAGFSPAGNTDGGASP 4626
A SP++ +SP SP S +PTY+ + +SP++ MSP G +SP+ +SP
Sbjct: 1633 AYSPTSPTYSPT-SPTYSPTSPTYSPTSPMYSPSSPAMSPARAGGVSYSPSSPHYSPSSP 1691
Query: 4627 FNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP+SP SP +P Y SP YSPSSPQ+
Sbjct: 1692 ----QYSPSSPH-----YSPSSPHYSPSSPQ-YSPSSPQY 1721
Score = 47.4 bits (111), Expect = 0.004
Identities = 38/98 (38%), Positives = 49/98 (49%), Gaps = 6/98 (6%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT A+SPT+ SP +SP T SP +S
Sbjct: 1610 SPSYSPTSPSYSPTSPAYSPT--SPAYSPTSPTYSPTSPTYSPTSPTYSPTSPM----YS 1663
Query: 4648 PASPG-DPLGA----LSPRTPSYGGMSPGVYSPSSPQF 4746
P+SP P A SP +P Y SP YSPSSP +
Sbjct: 1664 PSSPAMSPARAGGVSYSPSSPHYSPSSP-QYSPSSPHY 1700
Score = 46.6 bits (109), Expect = 0.007
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWN---SGVTPTYA--GAAWSPTTGGMSPGAG-FSPAGNTDGGASPFN 4632
SPS SPA+SP + S +PTY+ +SPT+ SP + +SP + SP
Sbjct: 1617 SPSYSPTSPAYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSP---SSPAMSPAR 1673
Query: 4633 EGG--WSPASP--GDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
GG +SP+SP SP +P Y SP YSPSSPQ+
Sbjct: 1674 AGGVSYSPSSPHYSPSSPQYSPSSPHYSPSSPH-YSPSSPQY 1714
>gi|50289967|ref|XP_447415.1| unnamed protein product [Candida
glabrata]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata
CBS138]
Length = 1715
Score = 1452 bits (3760), Expect = 0.0
Identities = 787/1614 (48%), Positives = 1055/1614 (64%), Gaps = 34/1614 (2%)
Frame = +1
Query: 7 LVGVDFQ-APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGV 177
+VG + APLR V VQFG+ PEEI+ +SVA + PE + + K+GGL DPR G
Sbjct: 1 MVGQQYSSAPLRTVKEVQFGLFSPEEIRAISVAKIRLPETMDETQTRAKIGGLNDPRLGS 60
Query: 178 IDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAP 357
IDR +C TC + +CPGHFGH++LAKPVFHIGF+TK K+ +C +CG+LL+D+
Sbjct: 61 IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHIGFITKIKKVCESLCMHCGKLLLDEHNE 120
Query: 358 RVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGR 537
++ + ++ + KKR ++ LCK K VCE GGCG
Sbjct: 121 QMRQAIQIK--DPKKRFNAVWSLCKTKMVCETDVPSEDDPTKLISR---------GGCGN 169
Query: 538 YQPSYRRVGIDINAEWKKNVNE---DTQERKIMLTAERVLEVFQQITDEDILVIGMDPQF 708
QP+ R+ G+ + WKK+ + D E++++ T E +L +F+ I+ ED +G + +F
Sbjct: 170 TQPTIRKDGLKLVGSWKKDKSTGDADEPEQRVLST-EEILNIFKHISPEDSYRLGFNEEF 228
Query: 709 ARPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHV 888
ARPEWMI T S + +DDLT KL+DI+K N L+ E NGA H
Sbjct: 229 ARPEWMILTVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHA 288
Query: 889 LTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFS 1068
+ + LLQFHVAT +DN I G P A QK GRP+KSI+ RLKGKEGRIRGNLMGKRVDFS
Sbjct: 289 VEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 1069 ARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----E 1236
ARTVI+ DPNL +D VGVP++IA+ LT+PE+VTP+N+D+L +LV G ++PGAK +
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLSQLVRNGPNEHPGAKYVIRD 408
Query: 1237 NGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTF 1416
NG R+DLRY R+ D+ LQ G++VERH+ D D ++FNRQP+LHKMSMM HRVK++P+STF
Sbjct: 409 NGDRIDLRYSKRSGDVQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTF 468
Query: 1417 RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTL 1596
R+NLSVTSPYNADFDGDEMNLH+PQS ETRAE+ ++ VP Q+++PQ+NKP MGIVQDTL
Sbjct: 469 RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTL 528
Query: 1597 CAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNV 1776
C +R +T RD F+++ ++++L ++P WDG +P PAI+KPKPLW+GKQ+ S+ IP +++
Sbjct: 529 CGIRKLTLRDTFLEFDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPKGIHL 588
Query: 1777 LRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGY 1956
R D G +SP D +++ GE++ G+V KTVG S+G L+HVVT E G
Sbjct: 589 QRF--------DEGT-TLLSPKDNGMLVIDGEIIFGVVDKKTVGSSSGGLIHVVTREKGP 639
Query: 1957 EIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHN 2136
I A + +IQ V+N WL+ G + GIGDT+AD T +I TI +AKQ V V ++A
Sbjct: 640 TICARLFGNIQKVVNFWLLHNGFSTGIGDTVADGQTMREISETIAEAKQKVEAVTKEAQA 699
Query: 2137 DDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINIS 2316
+ L G TLR++FE+ V + LN+ARDR G A+ +L + NN INI+
Sbjct: 700 NLLTAKHGMTLRESFEDNVVRFLNEARDRAGRLAEMNLKDLNNVKQMVSAGSKGSFINIA 759
Query: 2317 QVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMG 2496
Q+ ACVGQQ+VEGKRI FGF RTLPHF KDDY PESKGFVENSYL GLTP EFFFHAMG
Sbjct: 760 QMSACVGQQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMG 819
Query: 2497 GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE 2676
GREGLIDTAVKTAETGYIQRRL+KA+E +MV+YDGT RNSL ++Q YGEDG+D +E
Sbjct: 820 GREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAGHIE 879
Query: 2677 NQNMPTMKPNNAVFERDFRMDLTD-NKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
Q++ TM ++ FER +R+DL + + L + E I + + ++L + E+ QL +
Sbjct: 880 KQSLDTMGGSDQAFERRYRIDLLNTSNSLEPSLLESGSEIIGDLKVQMAL-DEEYKQLVK 938
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLI 3033
DRR LR IF G++ LP N++R+I NAQ+ F++D KP +L+ +I+ VR+L +L+
Sbjct: 939 DRRFLRTIFSDGESSWPLPVNIRRIIQNAQQTFRIDHTKPSDLTIPEIINSVRDLQDRLL 998
Query: 3034 IVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIA 3213
++ EI K+AQ +A L LLRS L T+ + + +L EAF+W+L +E++F ++I
Sbjct: 999 VLRSKSEIIKKAQDDAVTLFCCLLRSRLATRRVLQEYRLTKEAFEWVLNNVEAQFLRSIV 1058
Query: 3214 QPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTV 3393
PGEMVG LAAQS+GEPATQMTLNTFH+AGV++K VT GVPRLKEI+NV+K +KTPSLTV
Sbjct: 1059 HPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTV 1118
Query: 3394 FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPD 3573
+L + D EKAK V +EHTTLK VT + IYYDPDP++TVI ED+E + + + + D
Sbjct: 1119 YLEPEYSADQEKAKLVRSAIEHTTLKSVTVASEIYYDPDPRSTVIPEDDEIIQLHFSLLD 1178
Query: 3574 HD----LSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVF 3741
+ L + SPWLLR+ELDR M DK LTM + +RI F ND+ I+++DNAEKL+
Sbjct: 1179 DETEKLLDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKDTFKNDLFVIWSEDNAEKLII 1238
Query: 3742 RLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKR 3921
R R+ +A+ E E+D L+ IE ML ++TL+GI I +V M + + R
Sbjct: 1239 RCRVVRPKALDAETE----AEEDHMLKKIENTMLENITLRGIEGIERVVMMKYD-----R 1289
Query: 3922 IIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIE 4101
+ G ++ V +W+LETDG L V++ +DP R +N +I EVLGIEA R A+
Sbjct: 1290 KVPNETGEYQKVPEWVLETDGVNLSEVMTVPGVDPTRIYTNSFIDIMEVLGIEAGRAALY 1349
Query: 4102 REMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDIL 4281
+E+ NVI+ DGSYVNYRH+ALL DVMT +G L ++TRHG NR GALMRCSFEETV+IL
Sbjct: 1350 KEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSSTGALMRCSFEETVEIL 1409
Query: 4282 MEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGM------EIPQNVVMG 4443
EA AE D +GVSEN++LGQ+A GTG FD+++D E M E+ G
Sbjct: 1410 FEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITELEDGQDGG 1469
Query: 4444 GGFYGSFAG-------SPSNREFSP----AHSPWNSGVTPTYAGAAWSPTTGGMSP-GA- 4584
Y + AG FSP S SG Y GA + G SP GA
Sbjct: 1470 ATPYSNEAGLVNTDIDVKDELMFSPLVDAGSSDAMSGGFTAYGGAEYG---GATSPFGAY 1526
Query: 4585 GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
G +PA GG S G+SP SP A SP +PSY SP YSP+SP +
Sbjct: 1527 GDAPASPGFGGVS---SPGFSPTSP-----AYSPTSPSYSPTSPS-YSPTSPSY 1571
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1561 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1614
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1615 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1641
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1554 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1607
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1608 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1634
Score = 48.1 bits (113), Expect = 0.002
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1677
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP SP +
Sbjct: 1678 PTSP-----SYSPTSPSYSPTSPS-YSPGSPTY 1704
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit
[Saccharomyces cerevisiae]
Length = 1726
Score = 1449 bits (3752), Expect = 0.0
Identities = 781/1653 (47%), Positives = 1054/1653 (63%), Gaps = 73/1653 (4%)
Frame = +1
Query: 7 LVGVDFQ-APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGV 177
+VG + APLR V VQFG+ PEE++ +SVA + FPE + + K+GGL DPR G
Sbjct: 1 MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS 60
Query: 178 IDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAP 357
IDR +C TC + +CPGHFGH++LAKPVFH+GF+ K K+ CVC +CG+LL+D+
Sbjct: 61 IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNE 120
Query: 358 RVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGR 537
+ + L +SKKR I+ LCK K VCE GGCG
Sbjct: 121 LMRQALAIK--DSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSR---------GGCGN 169
Query: 538 YQPSYRRVGIDINAEWKKN-VNEDTQERKI-MLTAERVLEVFQQITDEDILVIGMDPQFA 711
QP+ R+ G+ + WKK+ D E ++ +L+ E +L +F+ I+ +D +G + F+
Sbjct: 170 TQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFS 229
Query: 712 RPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVL 891
RPEWMI T S + +DDLT KL+DI+K N L+ E NGA H +
Sbjct: 230 RPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAI 289
Query: 892 TDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSA 1071
+ LLQFHVAT +DN I G P A QK GRP+KSI+ RLKGKEGRIRGNLMGKRVDFSA
Sbjct: 290 EEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSA 349
Query: 1072 RTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----EN 1239
RTVI+ DPNL +D VGVP++IA+ LT+PE+VTP+N+D+L +LV G ++PGAK ++
Sbjct: 350 RTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDS 409
Query: 1240 GARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFR 1419
G R+DLRY RA D+ LQ G++VERH+ D D ++FNRQP+LHKMSMM HRVK++P+STFR
Sbjct: 410 GDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFR 469
Query: 1420 MNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLC 1599
+NLSVTSPYNADFDGDEMNLH+PQS ETRAE+ ++ VP Q+++PQ+NKP MGIVQDTLC
Sbjct: 470 LNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLC 529
Query: 1600 AVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVL 1779
+R +T RD FI+ ++++L ++P WDG +P PAI+KPKPLW+GKQ+ S+ IP +++
Sbjct: 530 GIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQ 589
Query: 1780 RTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYE 1959
R D G +SP D ++I G+++ G+V KTVG S G L+HVVT E G +
Sbjct: 590 RF--------DEGT-TLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQ 640
Query: 1960 IAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHND 2139
+ A + +IQ V+N WL+ G + GIGDTIAD T +I TI +AK+ V+DV ++A +
Sbjct: 641 VCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQAN 700
Query: 2140 DLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQ 2319
L G TLR++FE+ V + LN+ARD+ G A+ +L + NN INI+Q
Sbjct: 701 LLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQ 760
Query: 2320 VIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGG 2499
+ ACVGQQ+VEGKRI FGF RTLPHF KDDY PESKGFVENSYL GLTP EFFFHAMGG
Sbjct: 761 MSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGG 820
Query: 2500 REGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEN 2679
REGLIDTAVKTAETGYIQRRL+KA+E +MV+YD T RNSL ++Q YGEDG+D +E
Sbjct: 821 REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEK 880
Query: 2680 QNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDR 2859
Q++ T+ ++A FE+ +R+DL + + EI L++ E+ QL +DR
Sbjct: 881 QSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDR 940
Query: 2860 RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIV 3039
+ LR++F G+A LP N++R+I NAQ+ F +D KP +L+ ++ GV++L + L+++
Sbjct: 941 KFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVL 1000
Query: 3040 SGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQP 3219
G +EI + AQ +A L LLRS L T+ + + +L +AFDW+L IE++F +++ P
Sbjct: 1001 RGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHP 1060
Query: 3220 GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFL 3399
GEMVG LAAQS+GEPATQMTLNTFH+AGV++K VT GVPRLKEI+NV+K +KTPSLTV+L
Sbjct: 1061 GEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL 1120
Query: 3400 TGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD 3579
A D E+AK + +EHTTLK VT + IYYDPDP++TVI EDEE + + + + D +
Sbjct: 1121 EPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEE 1180
Query: 3580 LSRT----SPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRL 3747
++ SPWLLR+ELDR M DK LTM + +RI F ND+ I+++DN EKL+ R
Sbjct: 1181 AEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRC 1240
Query: 3748 RIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRII 3927
R+ +A+ E E+D L+ IE ML ++TL+G+ I +V M + + R +
Sbjct: 1241 RVVRPKSLDAETE----AEEDHMLKKIENTMLENITLRGVENIERVVMMKYD-----RKV 1291
Query: 3928 ITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIERE 4107
+P G + +W+LETDG L V++ IDP R +N +I EVLGIEA R A+ +E
Sbjct: 1292 PSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKE 1351
Query: 4108 MDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILME 4287
+ NVI+ DGSYVNYRH+ALL DVMT +G L ++TRHG NR GALMRCSFEETV+IL E
Sbjct: 1352 VYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFE 1411
Query: 4288 AAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK-CKYG----------------- 4413
A AE D +GVSEN++LGQ+A GTG FD+++D E KY
Sbjct: 1412 AGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVT 1471
Query: 4414 ------------------------MEIPQNVVMGGGF-----------------YGSFAG 4470
++ N M GGF YG
Sbjct: 1472 PYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGVDYGEATSPFAAYGEAPT 1531
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SP SP SP + +PT A+SPT+ SP +SP + SP +S
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPT--SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1585
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY MSP YSP+SP +
Sbjct: 1586 PTSP-----SYSPTSPSYSPMSPS-YSPTSPSY 1612
Score = 51.2 bits (121), Expect = 3e-04
Identities = 36/93 (38%), Positives = 48/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT A+SPT+ SP + +SP + SP +S
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPT--SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1683
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP +PSY SPG YSP SP +
Sbjct: 1684 PTSPN-----YSPTSPSYSPTSPG-YSPGSPAY 1710
Score = 50.1 bits (118), Expect = 6e-04
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = +1
Query: 4408 YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GA 4584
YG E P + G G SP+ SPA+SP + +PT ++SPT+ SP
Sbjct: 1526 YG-EAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPT--SPSYSPTSPSYSPTSP 1582
Query: 4585 GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP + SP +SP SP + SP +PSY SP YSP+SP +
Sbjct: 1583 SYSPTSPSYSPTSP----SYSPMSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1626
Score = 48.5 bits (114), Expect = 0.002
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP SP +S
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPAYSPTSP----SYS 1662
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1663 PTSP-----SYSPTSPSYSPTSPS-YSPTSPNY 1689
>gi|6320061|ref|NP_010141.1| RNA polymerase II large subunit; Rpo21p
[Saccharomyces cerevisiae]
gi|2507347|sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II
largest subunit (B220)
gi|2144431|pir||RNBY2L DNA-directed RNA polymerase (EC 2.7.7.6) II
215K chain - yeast (Saccharomyces cerevisiae)
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At
3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At
2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna
Polymerase Ii Complexed With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated
Elongation Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
Length = 1733
Score = 1448 bits (3749), Expect = 0.0
Identities = 770/1598 (48%), Positives = 1048/1598 (65%), Gaps = 18/1598 (1%)
Frame = +1
Query: 7 LVGVDFQ-APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGV 177
+VG + APLR V VQFG+ PEE++ +SVA + FPE + + K+GGL DPR G
Sbjct: 1 MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS 60
Query: 178 IDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAP 357
IDR +C TC + +CPGHFGH++LAKPVFH+GF+ K K+ CVC +CG+LL+D+
Sbjct: 61 IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNE 120
Query: 358 RVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGR 537
+ + L +SKKR I+ LCK K VCE GGCG
Sbjct: 121 LMRQALAIK--DSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSR---------GGCGN 169
Query: 538 YQPSYRRVGIDINAEWKKN-VNEDTQERKI-MLTAERVLEVFQQITDEDILVIGMDPQFA 711
QP+ R+ G+ + WKK+ D E ++ +L+ E +L +F+ I+ +D +G + F+
Sbjct: 170 TQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFS 229
Query: 712 RPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVL 891
RPEWMI T S + +DDLT KL+DI+K N L+ E NGA H +
Sbjct: 230 RPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAI 289
Query: 892 TDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSA 1071
+ LLQFHVAT +DN I G P A QK GRP+KSI+ RLKGKEGRIRGNLMGKRVDFSA
Sbjct: 290 EEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSA 349
Query: 1072 RTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----EN 1239
RTVI+ DPNL +D VGVP++IA+ LT+PE+VTP+N+D+L +LV G ++PGAK ++
Sbjct: 350 RTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDS 409
Query: 1240 GARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFR 1419
G R+DLRY RA D+ LQ G++VERH+ D D ++FNRQP+LHKMSMM HRVK++P+STFR
Sbjct: 410 GDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFR 469
Query: 1420 MNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLC 1599
+NLSVTSPYNADFDGDEMNLH+PQS ETRAE+ ++ VP Q+++PQ+NKP MGIVQDTLC
Sbjct: 470 LNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLC 529
Query: 1600 AVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVL 1779
+R +T RD FI+ ++++L ++P WDG +P PAI+KPKPLW+GKQ+ S+ IP +++
Sbjct: 530 GIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQ 589
Query: 1780 RTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYE 1959
R D G +SP D ++I G+++ G+V KTVG S G L+HVVT E G +
Sbjct: 590 RF--------DEGT-TLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQ 640
Query: 1960 IAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHND 2139
+ A + +IQ V+N WL+ G + GIGDTIAD T +I TI +AK+ V+DV ++A +
Sbjct: 641 VCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQAN 700
Query: 2140 DLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQ 2319
L G TLR++FE+ V + LN+ARD+ G A+ +L + NN INI+Q
Sbjct: 701 LLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQ 760
Query: 2320 VIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGG 2499
+ ACVGQQ+VEGKRI FGF RTLPHF KDDY PESKGFVENSYL GLTP EFFFHAMGG
Sbjct: 761 MSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGG 820
Query: 2500 REGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEN 2679
REGLIDTAVKTAETGYIQRRL+KA+E +MV+YD T RNSL ++Q YGEDG+D +E
Sbjct: 821 REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEK 880
Query: 2680 QNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDR 2859
Q++ T+ ++A FE+ +R+DL + + EI L++ E+ QL +DR
Sbjct: 881 QSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDR 940
Query: 2860 RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIV 3039
+ LR++F G+A LP N++R+I NAQ+ F +D KP +L+ ++ GV++L + L+++
Sbjct: 941 KFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVL 1000
Query: 3040 SGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQP 3219
G +EI + AQ +A L LLRS L T+ + + +L +AFDW+L IE++F +++ P
Sbjct: 1001 RGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHP 1060
Query: 3220 GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFL 3399
GEMVG LAAQS+GEPATQMTLNTFH+AGV++K VT GVPRLKEI+NV+K +KTPSLTV+L
Sbjct: 1061 GEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL 1120
Query: 3400 TGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD 3579
A D E+AK + +EHTTLK VT + IYYDPDP++TVI EDEE + + + + D +
Sbjct: 1121 EPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEE 1180
Query: 3580 LSRT----SPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRL 3747
++ SPWLLR+ELDR M DK LTM + +RI F ND+ I+++DN EKL+ R
Sbjct: 1181 AEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRC 1240
Query: 3748 RIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRII 3927
R+ +A+ E E+D L+ IE ML ++TL+G+ I +V M + + R +
Sbjct: 1241 RVVRPKSLDAETE----AEEDHMLKKIENTMLENITLRGVENIERVVMMKYD-----RKV 1291
Query: 3928 ITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIERE 4107
+P G + +W+LETDG L V++ IDP R +N +I EVLGIEA R A+ +E
Sbjct: 1292 PSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKE 1351
Query: 4108 MDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILME 4287
+ NVI+ DGSYVNYRH+ALL DVMT +G L ++TRHG NR GALMRCSFEETV+IL E
Sbjct: 1352 VYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFE 1411
Query: 4288 AAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK-CKYGMEIPQNVVMGGGFYGSF 4464
A AE D +GVSEN++LGQ+A GTG FD+++D E KY E + G G
Sbjct: 1412 AGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGV- 1470
Query: 4465 AGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGG--ASPFNEG 4638
+P + E ++ + ++ S + M+ GF+ G D G SPF
Sbjct: 1471 --TPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMA--GGFTAYGGADYGEATSPFGAY 1526
Query: 4639 GWSPASPGDPLGA--LSPRTPSYGGMSPGVYSPSSPQF 4746
G +P SPG + + SP +P+Y SP YSP+SP +
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPTSP-AYSPTSPSY 1563
Score = 51.2 bits (121), Expect = 3e-04
Identities = 36/93 (38%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT A+SPT+ SP +SP + SP +S
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPT--SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 1690
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP SP +PSY SPG YSP SP +
Sbjct: 1691 PTSPN-----YSPTSPSYSPTSPG-YSPGSPAY 1717
Score = 50.4 bits (119), Expect = 5e-04
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = +1
Query: 4408 YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GA 4584
YG E P + G G SP+ SPA+SP + +PT ++SPT+ SP
Sbjct: 1526 YG-EAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPT--SPSYSPTSPSYSPTSP 1582
Query: 4585 GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP + SP +SP SP + SP +PSY SP YSP+SP +
Sbjct: 1583 SYSPTSPSYSPTSP----SYSPTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1626
Score = 48.9 bits (115), Expect = 0.001
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----AYS 1662
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 1663 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1689
>gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710
[Cryptococcus neoformans var. neoformans B-3501A]
Length = 1786
Score = 1432 bits (3706), Expect = 0.0
Identities = 771/1620 (47%), Positives = 1045/1620 (63%), Gaps = 47/1620 (2%)
Frame = +1
Query: 28 APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVY-ENGKPKLGGLMDPRQGVIDRRGRCMT 204
AP++ V +QFGI+ PEEIK SVA +E EV ENGK K+GGLMDP+ G IDR +C T
Sbjct: 10 APVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQT 69
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKT 384
C +++CPGHFGH+ELA+PVFH GF+ K KIL CVC+ CG+L +D P V +++
Sbjct: 70 CLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANAVRRI 129
Query: 385 GTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVA-----GGCGRYQPS 549
++ RL I+ L K K CE A GGCG QP
Sbjct: 130 --KAQHRLKAIWALAKDKKHCEPDELDEKDNGDATFEDEYLQEQKAAMKGHGGCGHEQPV 187
Query: 550 YRRVGIDINAEWK---KNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE 720
+R+ G+ + WK K +E + + ++ V + ++IT ED+ ++G++ +ARP+
Sbjct: 188 WRKKGLKLMGVWKPTDKGEDEAAEPEERNISPGEVYNILKKITPEDLHIMGLNADYARPD 247
Query: 721 WMICTXXXXXXXXXXXXXXTFGSA-KNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTD 897
WMI T G A +++DDLT+KLS IIK N ++R EA G V+ +
Sbjct: 248 WMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPPSVVNE 307
Query: 898 DVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSART 1077
LLQ+HV T +DN I GLP QKGGR +K+I+ RLKGKEGR+RGNLMGKRVDFSART
Sbjct: 308 QFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDFSART 367
Query: 1078 VITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGA 1245
VIT DPNL +D VGVP++IA LT+PE VTP+N+ LQ LVN G YPGA K+ G
Sbjct: 368 VITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYVKDTGE 427
Query: 1246 RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMN 1425
RVDL+Y + LQ G+ VERH+KDGD ++FNRQP+LHKMSMM HRVK++ +STFR+N
Sbjct: 428 RVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLN 487
Query: 1426 LSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAV 1605
LSVTSPYNADFDGDEMNLH+PQS ETRAE+ +IA VPRQ+++PQANKPVMGIVQDTLC +
Sbjct: 488 LSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGI 547
Query: 1606 RMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRT 1785
R T RD F+DW + +L++LP WDG +P PAI KPKP+WTGKQ+ S+ IP +N+
Sbjct: 548 RKFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKPKPMWTGKQLLSMTIPKGINI--- 604
Query: 1786 HSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA 1965
T+ ++E P I D V+IE+GEL+ G + G + L+HV+ ELG+ A
Sbjct: 605 --TYKNNEKPSP---IDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHIAA 659
Query: 1966 ANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDL 2145
+F+S +Q V+N WL+ G ++GIGDTI D+AT I N + +AK+ V +I++A + +
Sbjct: 660 RDFFSAVQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRM 719
Query: 2146 EPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVI 2325
+P PG T+R+T E + LN ARD TG + Q +L NN INISQ+
Sbjct: 720 KPKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMS 779
Query: 2326 ACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 2505
VGQQ VEGKRI FGFRHR+LPHF +DDYGPES+GFVENSYL GLTP EF+FHAMGGRE
Sbjct: 780 GVVGQQFVEGKRISFGFRHRSLPHFSRDDYGPESRGFVENSYLRGLTPQEFWFHAMGGRE 839
Query: 2506 GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 2685
GLIDTAVKTAETGYIQRRL+KAME + V YDGTVRNS+ ++VQ YGEDG+DG +E Q+
Sbjct: 840 GLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQS 899
Query: 2686 MPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRL 2865
+ ++ ++ FER +++D+ K + + Q S L++ E++Q+ EDRR+
Sbjct: 900 LDIIRLSDQAFERRYKIDVLGGSGFSKGILQAGID--QSSISLQKLLDEEFAQISEDRRI 957
Query: 2866 LR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVS 3042
LR +I+P G LP N+QR+I N+Q+IF +D R P +L P++++ L+ +L++V
Sbjct: 958 LRSEIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQRDALADRLLVVR 1017
Query: 3043 GNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPG 3222
G+D++S+ AQ NATL+ N+LLRS L T+ + + LN EAFDW++GE+E F +A+
Sbjct: 1018 GDDKLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAA 1077
Query: 3223 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLT 3402
EMVG LAAQS+GEPATQMTLNTFHYAGV++K+VT GVPRLKEIINV+ ++TP+L V+L
Sbjct: 1078 EMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALNVYLE 1137
Query: 3403 GAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD- 3579
+K E A ++ KL +T L+ +T I+YDP +T I ED+++V F+ +PD D
Sbjct: 1138 PEYSKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFVDAFFAIPDEDI 1197
Query: 3580 -LSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIA 3756
L SPWLLR+ELDR ++++ M I D I G DV I+++DNA KLV R+R+
Sbjct: 1198 RLELHSPWLLRLELDRAKVLEGGYEMSQIVDAIAETVGKDVFVIHSEDNAPKLVIRIRVV 1257
Query: 3757 GEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITP 3936
E +E++ ++D+FL+ IE +L + L GI I++V+++ + K+++++
Sbjct: 1258 AE-----KEDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFIS-----EGKQVVVSQ 1307
Query: 3937 EGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDN 4116
G + +W LETDG L V++ ++ RT SN+ E++E LGIEA R A+ +E++
Sbjct: 1308 NGEYDQEKEWFLETDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNG 1367
Query: 4117 VISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAV 4296
VI GSYVNYRHLALLCD+M +KG LM+ITRHGINR + GAL R +FEETV+IL+EAA
Sbjct: 1368 VIEMGGSYVNYRHLALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAA 1427
Query: 4297 HAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK---YGMEIPQNVVMGGG------ 4449
+ D KGV+EN++LGQ+A GTG FD+ LD+ K +P +M GG
Sbjct: 1428 VGDVDDCKGVAENVLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMAGGMAGGMT 1487
Query: 4450 -------------FYGSFAGSPSNREFSPAHSPWN-SGVTPTYAGAAWSPTTGGMSPGAG 4587
+G G+ + FSP S N G Y G SP GGMSP AG
Sbjct: 1488 PGGAMTPYDNLSPMWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGMSP-AG 1546
Query: 4588 FSPAGNTD-GGASPF--NEGGWSPASP--GDPLGALSP--RTPSYGGMSPGVYSPSSPQF 4746
+SP+ SPF +SP SP G GA SP YG SP YSP+SPQ+
Sbjct: 1547 YSPSSPAGYSPTSPFAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSP-AYSPTSPQY 1605
Score = 51.6 bits (122), Expect = 2e-04
Identities = 42/107 (39%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGG--- 4641
SP++ +FSP SP S +PTY+ A SP GG G SP T SP + G
Sbjct: 1606 SPTSPQFSPT-SPSFSPSSPTYSPA--SPAYGGAGAGNRASPYSPTSPAYSPTSPMGGIT 1662
Query: 4642 ---WSPASP--GDPLGALSPRTPSYGGMSPGV-------YSPSSPQF 4746
+SP SP A SP +PSY SP YSP+SPQF
Sbjct: 1663 SPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQF 1709
>gi|21280517|gb|AAM45151.1| RNA polymerase II largest subunit
[Naegleria gruberi]
Length = 1590
Score = 1415 bits (3663), Expect = 0.0
Identities = 779/1583 (49%), Positives = 1040/1583 (65%), Gaps = 75/1583 (4%)
Frame = +1
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
+CPGHFGH+ + PVF++ F+ +K+L+ VC +CG+LL DKS+ + + K N +K
Sbjct: 1 ECPGHFGHVRI-HPVFNVLFINTVVKVLQSVCIHCGKLLADKSSLQFKKASKFV--NRRK 57
Query: 403 RLTMIYDLC-KAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINA 579
R + DLC K K + E GCG QP R G+ I A
Sbjct: 58 RFKEMIDLCRKDKCIIE---TGNKENEQNQEANIDPTFQPRNGCGGLQPKISRDGLKIFA 114
Query: 580 EWKKNVNEDTQER--KIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXX 753
E+KK+ + + ++ K LTAER L++F++I ED+ ++G D ARPEWMI T
Sbjct: 115 EYKKDTSAEAKQELTKQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPP 174
Query: 754 XXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATL 933
+ +++DDLTHKL+DIIK N +Q+NE +G H + + VR+LQ+H AT
Sbjct: 175 PQVRPSVHHGSADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATY 234
Query: 934 VDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDT 1113
V+N PG+PTAT K GRPLKSI+QRLKGKEGR+RGNLMGKRVDFSARTVITADPN+ ID
Sbjct: 235 VNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQ 294
Query: 1114 VGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAAD 1281
VGVPRT+A N+T PEIVTPFN ++L ELV G YPGAK E+G R+DLR+ A+
Sbjct: 295 VGVPRTVASNMTVPEIVTPFNFERLNELVTNGPLTYPGAKYVIREDGTRIDLRFASGKAN 354
Query: 1282 --LHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
+ L+ GY+VERH++DGD+I+FNRQP+LHKMSMMGHR+K++P+STFRMNLSVT+PYNAD
Sbjct: 355 DQIQLEYGYKVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNAD 414
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMNLH+PQSL+T+AE+ E+ MVPR +ITPQ+N+PV+ +VQDTL A +T+RDVFI
Sbjct: 415 FDGDEMNLHVPQSLQTKAELLELTMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFI 474
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
MM+ LM+L +DGK+P PAILKPKPLWTGKQ+F+ ++P VN+ T STH D D
Sbjct: 475 AKDLMMNCLMHLIDFDGKLPVPAILKPKPLWTGKQLFTFLLP-KVNLENTSSTHEDLTDK 533
Query: 1816 GPY--KWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQ 1989
+ I DTKV+I+ GEL+SG++ K++G S G+L+H++ E G F Q
Sbjct: 534 KDHLDHDIPEFDTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQ 593
Query: 1990 TVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTL 2169
VIN WLI G +IGIGDTIAD+AT I+ TIRKA++DV +++ A L G T+
Sbjct: 594 RVINHWLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAGRTI 653
Query: 2170 RQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNV 2349
+Q+FEN+VN++LN AR+ G+ A+KSL + NN INISQ+IACVGQQNV
Sbjct: 654 QQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVGQQNV 713
Query: 2350 EGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 2529
EGKRIP+GFR+RTLPHF +DD+GPES+GFV NSYL GLTP EFFFH MGGREGLIDTAVK
Sbjct: 714 EGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVK 773
Query: 2530 TAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNN 2709
T+ETGYIQRRLIKAME +MV YDGTVR++ +VQ YGEDG+D VE+Q++ M ++
Sbjct: 774 TSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNLSD 833
Query: 2710 AVFERDF-----------------RMDLTDNKFLRKNYSEDVVRE--IQESEDGISLVES 2832
A F+ + + + L++++ V + +++ +S V
Sbjct: 834 AKFQDKYWYNSLGSSPSFTNPTESSVSMPSGGILKESFISTKVYDEILKDPATYLSKVRE 893
Query: 2833 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKV--DLRKPVNLSPLHVIS 3003
E+ L EDR +LR +IFP + KIV+P NL+R+I NAQK + + + KP +++P++VI
Sbjct: 894 EYKTLMEDRHILRTEIFPNAENKIVMPVNLKRIIKNAQKEYGIHPSIGKPSDMNPIYVIE 953
Query: 3004 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKS-KLNSEAFDWLLG 3180
+++L L+++ G DE+S +AQ NATLL ++ LRST K K+ L + + L
Sbjct: 954 KIKKLCDDLVVIKGTDELSTEAQTNATLLFSMFLRSTFFFKGCSLKNCVLLKKPLTFWLV 1013
Query: 3181 EIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV 3360
++E RF +AQPGEMVG++AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKE++NV
Sbjct: 1014 KLELRFHNCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNV 1073
Query: 3361 SKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDE 3540
+K +KTP LT++L D EKAK V LE+TTL VT +I YDP+P N+VI ED
Sbjct: 1074 AKNIKTPGLTIYLNNEYIGDFEKAKMVKEDLEYTTLGHVTAAASIVYDPEPANSVIEEDR 1133
Query: 3541 EWV-SIFYEMPDH---DLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTI 3708
E++ + E+ D D + +PW LR ELD K M+ LTM +A +I F ND+
Sbjct: 1134 EFIEELLEELKDTAVLDSTTLNPWSLRFELD-KMMMSDTLTMAQVAKKIQEEFQNDITCF 1192
Query: 3709 YTDDNAEKLVFRLRIAGEDKGEAQEEQVDK----------MEDDV------FLRCIEANM 3840
Y+DDNA+KL+ +RI +DK + ++ QV K E+D+ FLR +E+NM
Sbjct: 1193 YSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDIENSTVEFLRRLESNM 1252
Query: 3841 LSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQI 4020
L++L L+G + KV++ + N DKK + G +V W+L+T+G LL VLS +
Sbjct: 1253 LNELALKGYKDLKKVFLREEN--DKK---VFSSSGVATVKQWVLDTEGCNLLAVLSHPYV 1307
Query: 4021 DPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 4200
D TTSND+ EI +VLGIEA R A+ REM VI FDGSYVNYRHLA+LCDVMT +G LM
Sbjct: 1308 DHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHRGGLM 1367
Query: 4201 AITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFD 4380
AITR GINR + G LMRCSFEETV+IL+EAA A+ D +KGVS N+M+GQLA GTGCF
Sbjct: 1368 AITRRGINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTGCFG 1427
Query: 4381 LVLDVEKCKYGMEI-PQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSP 4557
L LD E K + + P V YGS G+ + S +P++ GV Y G A SP
Sbjct: 1428 LYLDEELLKQAVAVKPSFVTETKSMYGSL-GATTPYHTSGLATPYHGGVATPYHGGASSP 1486
Query: 4558 TTGGMSPGAGFSPAGNTDGG-----------------ASPFNEGGWSPASPGD---PLGA 4677
T G G +P+ GG SP ++GG+SP+SPG+ A
Sbjct: 1487 WTQGAMTPLGRTPSPEYQGGFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPA 1546
Query: 4678 LSPRTPSYGGMSPGVYSPSSPQF 4746
SP +P+Y SP YSP+SP +
Sbjct: 1547 YSPSSPNYSPTSP-AYSPTSPNY 1568
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit
[Aspergillus oryzae]
Length = 1748
Score = 1410 bits (3650), Expect = 0.0
Identities = 762/1628 (46%), Positives = 1042/1628 (63%), Gaps = 54/1628 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGK--PKLGGLMDPRQGVIDRRGRC 198
+APLR + +QFG+ PEEIKRMSV HVE+PE + + P+ GL DPR G IDR+ C
Sbjct: 10 KAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDRQWNC 69
Query: 199 MTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILK 378
TC +CPGHFGH+ELA PVFHIGFLTK K+L VC CG++ + S + LE L+
Sbjct: 70 ETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDSKFLEALR 129
Query: 379 KTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
+ K+R I+ L K ++CE A + GGCG QP+ R+
Sbjct: 130 MR--DPKRRFDHIWRLSKDITICE--ADPPPDEDEPYAKESSKPTRMHGGCGNAQPTIRK 185
Query: 559 VGIDINAEWKKNVN-----EDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEW 723
GI + WK + + + Q K +T + L +F+ I+ ED+ ++G+ +ARPEW
Sbjct: 186 EGITLVGTWKPSKSMMDEMDMQQPEKKTITPQMALNIFRNISHEDVRIMGLSNDYARPEW 245
Query: 724 MICTXXXXXXXXXXXXXXTFGSAKNQ---DDLTHKLSDIIKTNQQLQRNEANGAAAHVLT 894
M+ T GS Q DDLT+KL++I++ NQ +QR E GA HV+
Sbjct: 246 MVLTVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVVR 305
Query: 895 DDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSAR 1074
+ LLQ+HVAT +DN I G P A QK RP+K+I+ RLKGKEGR+R NLMGKRVDFSAR
Sbjct: 306 EFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSAR 365
Query: 1075 TVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENG 1242
TVIT DPNL +D VGVP++IA+ LT+PE+VTP+N+DKLQ+LV+ G ++PGA+ +NG
Sbjct: 366 TVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIVRDNG 425
Query: 1243 ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRM 1422
R+DLR+ RA L G++VERH+ DGD+I+FNRQP+LHK SMMGHRV+++P+STFR+
Sbjct: 426 ERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRL 485
Query: 1423 NLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCA 1602
NLSVT+PYNADFDGDEMNLH+PQS E+RAE+ ++A+VP +++PQ N P+MGIVQDTLC
Sbjct: 486 NLSVTTPYNADFDGDEMNLHVPQSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCG 545
Query: 1603 VRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLR 1782
+ + +RD F+ +M+L+M++P WDG +P PAILKP+P WTGKQ+ S+ +P +N+LR
Sbjct: 546 IYKICRRDTFLTKEQVMNLMMWVPDWDGVIPPPAILKPRPRWTGKQIISMALPSGLNLLR 605
Query: 1783 THSTHPDSEDSGPYKWISP-GDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYE 1959
D ++S + +P D ++I G+L+ G+ KTVG S G ++H + E G
Sbjct: 606 V-----DKDNSALSEKFAPLNDGGLLIHGGQLMYGMFSKKTVGASGGGVIHTIFNEYGPG 660
Query: 1960 IAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHND 2139
A F++ Q ++N WL+ G +IGIGDTI D T I+N +R+ K++V + A ++
Sbjct: 661 TAVAFFNGAQAIVNYWLLHNGFSIGIGDTIPDAVTIQRIENCVRERKKEVETITASATDN 720
Query: 2140 DLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQ 2319
LEP PG +R+TFE+KV++ LN+ARD GS +KSL + NN INISQ
Sbjct: 721 TLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINISQ 780
Query: 2320 VIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGG 2499
+ A VGQQ+VEGKRIPFGF++RTLPHF KDDY PES+GFVENSYL GLTP+EFFFHAM G
Sbjct: 781 MTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAG 840
Query: 2500 REGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEN 2679
REGLIDTAVKTAETGYIQR+L+KA+E VMV YDGTVRNSL ++Q YGEDGLDG +EN
Sbjct: 841 REGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIEN 900
Query: 2680 QNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISL---VESEWSQLE 2850
Q + +K ++ F FR+DL D + ++ +V+ + E + + ++ EW QL
Sbjct: 901 QRVDIIKCSDDQFRDRFRIDLMDPE---RSLGPEVLEQANEIAGDVEVQRYLDEEWEQLL 957
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 3030
+ R LR + + + LP N+QR++ A+ F++ +L P VI V+ L +L
Sbjct: 958 KARAFLRTVAKEDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVIPQVQALLDRL 1017
Query: 3031 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 3210
+IV G+D IS++AQ NATLL LRS L + + T+ +N AF ++G IESRF +A
Sbjct: 1018 LIVRGDDPISQEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKAN 1077
Query: 3211 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 3390
A GEMVG LAAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEI+NV+ +KTPS+T
Sbjct: 1078 APAGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMT 1137
Query: 3391 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 3570
V+ D E AK + +EHT+L+ VT T IYYDPD ++TVI D + V ++ +P
Sbjct: 1138 VYQEPGRTHDKEGAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIENDRDMVESYFIIP 1197
Query: 3571 D---HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVF 3741
+ D SR S WLLRI L R +++DK LT++ +A RI + D+ I++D+NA++ V
Sbjct: 1198 EDVTDDSSRQSKWLLRIILSRPKLLDKGLTVQDVATRIKQAYPKDIAVIFSDNNADEQVI 1257
Query: 3742 RLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKR 3921
R+R + K ++E D +E DV L+ +E ++L LTL+G+ + + ++N +K +
Sbjct: 1258 RIRQIQDHK---EDEDDDDIEYDVTLKKLEQHLLDTLTLRGVNGVERAFIN-----EKSK 1309
Query: 3922 IIITPEGG-FKSVAD-----WILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEA 4083
+ + +G F S D W+LET G+AL VL+ +D RT SN E+FEV GIEA
Sbjct: 1310 VRVLEDGSLFTSKVDPLCKEWVLETSGSALGEVLAVPGVDATRTYSNQFIEVFEVFGIEA 1369
Query: 4084 VRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFE 4263
R A+ RE+ V++FDGSYVN+RHLALL DVMT +G+L +TRHGINR + GALMRCSFE
Sbjct: 1370 ARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFE 1429
Query: 4264 ETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLD--------VEKCKYG-- 4413
ETV+IL+EAA E D +GVSEN++LGQ+A GTG FD+ LD ++G
Sbjct: 1430 ETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNMLNTVVSNNARFGVM 1489
Query: 4414 --MEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSP-------TTG 4566
+ ++ G GSP S +P A SP TG
Sbjct: 1490 GAIGAKDAIISDGASTQYDTGSPMQDNAYIGTPDPESNFSPIRQAGAESPGGFTEYQPTG 1549
Query: 4567 GMSPGAGFSPAGNTDGGASPFNEGGWSPASPG-DPLGALSPRTPS-------YGGMSPGV 4722
G G GFSPA + G SP + +P SPG P + SP +P + SPG
Sbjct: 1550 GF--GGGFSPAATSPAGYSPSSPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPG- 1606
Query: 4723 YSPSSPQF 4746
+SP+SP F
Sbjct: 1607 FSPASPSF 1614
Score = 50.1 bits (118), Expect = 6e-04
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +1
Query: 4492 SPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGG---WSPASP 4659
SP++SP + G +PT +SPT+ SP + FSP + SP G SP SP
Sbjct: 1635 SPSYSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSP 1692
Query: 4660 GDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P +P +P + SP YSP+SP F
Sbjct: 1693 TSP--KYTPTSPGWSPTSPQTYSPTSPNF 1719
Score = 48.5 bits (114), Expect = 0.002
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGG----MSPGAGFSPAGN-TDGGASPFNE 4635
SP++ FSPA SP S +P+Y+ SP GG +SP + SP T G SP +
Sbjct: 1653 SPTSPSFSPA-SPAFSPTSPSYSPT--SPAIGGAARHLSPTSPTSPKYTPTSPGWSPTSP 1709
Query: 4636 GGWSPASP---GDPLGALSPRTPSYGGMSPGVYSPSSPQ 4743
+SP SP G P P +P Y SP +SPSSP+
Sbjct: 1710 QTYSPTSPNFAGSPTSPGGPTSPGYSPTSP-AFSPSSPR 1747
>gi|49085690|ref|XP_404946.1| hypothetical protein AN0809.2
[Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 1406 bits (3639), Expect = 0.0
Identities = 754/1627 (46%), Positives = 1038/1627 (63%), Gaps = 53/1627 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGK--PKLGGLMDPRQGVIDRRGRC 198
+APLR ++ +QFG+ PEEIKRMSV HVE+PE ++ + P+ GL DPR G IDR+ C
Sbjct: 10 KAPLRTIAEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDRQWNC 69
Query: 199 MTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILK 378
TC +CPGHFGH+ELA PVFHIGFLTK K+L VC CG++ + S P+ L+ L+
Sbjct: 70 ETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDPKFLDALR 129
Query: 379 KTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
+ K+R I+ L K +CE + GGCG QP+ R+
Sbjct: 130 IR--DPKRRFDHIWRLSKDILICEADPPPEDDEYGKESSKPVR---LHGGCGNAQPTVRK 184
Query: 559 VGIDINAEWKKNVN-----EDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEW 723
GI + WK + + + Q K ++T + L +F+ I+ ED+ ++G+ +ARPEW
Sbjct: 185 EGITLVGTWKPSKSMMDEMDMQQPEKKIITPQMALNIFRNISHEDVRIMGLSNDYARPEW 244
Query: 724 MICTXXXXXXXXXXXXXXTFGSAKNQ---DDLTHKLSDIIKTNQQLQRNEANGAAAHVLT 894
MI T GS Q DDLT+KL++I++ NQ +QR E GA HV+
Sbjct: 245 MILTVLPVPPPPVRPSVVVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVVR 304
Query: 895 DDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSAR 1074
+ LLQ+H+AT +DN I G P A QK RP+K+I+ RLKGKEGR+R NLMGKRVDFSAR
Sbjct: 305 EFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSAR 364
Query: 1075 TVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENG 1242
TVIT DPNL +D VGVP++IA+ LT+PE+VTP+N++KLQ+LV G ++PGA+ +NG
Sbjct: 365 TVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIVRDNG 424
Query: 1243 ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRM 1422
R+DLR+ RA L G++VERH+ DGD+I+FNRQP+LHK SMMGHRV+++P+STFR+
Sbjct: 425 ERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRL 484
Query: 1423 NLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCA 1602
NLSVTSPYNADFDGDEMNLH+PQS E+RAE++++A+VP+ +++PQ N P+MGIVQDTLC
Sbjct: 485 NLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLALVPQNIVSPQRNGPLMGIVQDTLCG 544
Query: 1603 VRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLR 1782
+ + +RDVF+ +M+++M++P WDG +P PAI KP+P WTGKQ+ S++ P +N++R
Sbjct: 545 IYKICRRDVFLTKEQVMNIMMWVPDWDGVIPPPAIFKPRPRWTGKQMISMVFPSGLNLMR 604
Query: 1783 THS--THPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGY 1956
T S P SE P + D V+I G+L+ G++ K VG S G ++H++ E G
Sbjct: 605 TDSKGAAPSSEKYSPLQ-----DGNVLIHEGQLMYGMLNKKIVGASGGGVIHIIFNEYGA 659
Query: 1957 EIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHN 2136
+ A F++ Q ++N WL+ G +IGIGDTI + T I+ +RK K +V ++ A
Sbjct: 660 DAAVAFFNGAQAIVNYWLLHNGFSIGIGDTIPNDQTIQAIEECVRKRKLEVEEITATATQ 719
Query: 2137 DDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINIS 2316
+ LEP PG +R+TFE+KV+ LN ARD G++ +KSL + NN INIS
Sbjct: 720 NKLEPLPGMNVRETFESKVSVALNTARDEAGTATEKSLKDLNNAVQMSRSGSKGSIINIS 779
Query: 2317 QVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMG 2496
Q+ A VGQQ VEGKRI FGF++RTLPHF KDDY PES+GFVENSYL GLTP+EFFFHAM
Sbjct: 780 QMTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 839
Query: 2497 GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE 2676
GREGLIDTAVKTAETGYIQR+L+KA+E VMV YDGTVRNSL ++Q YGEDGLDG +E
Sbjct: 840 GREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIE 899
Query: 2677 NQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISL---VESEWSQL 2847
+Q + + ++ F+ FR+DL D + DV+ + E + + ++ EW +L
Sbjct: 900 HQKVDILTCSDEKFKERFRIDLMDPAL---SLGPDVLEQANEIAGDVEVQRYLDQEWEEL 956
Query: 2848 EEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKK 3027
+ R ++R + + + LP N+QR++ A+ F++ +L P VI V+ L +
Sbjct: 957 LKAREVVRHVAKGTEDSMPLPINIQRILEMARTTFRIREGTMSDLHPAEVIPQVQSLLDR 1016
Query: 3028 LIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQA 3207
L+IV G+D ISK+AQ +AT+L LRS L K + T+ +N AF +LG IESRF +A
Sbjct: 1017 LVIVRGDDPISKEAQESATMLFKAQLRSRLAFKRLVTQYSMNKLAFQHVLGAIESRFAKA 1076
Query: 3208 IAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSL 3387
A PGEMVG LAAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEI+NV+ +KTPS+
Sbjct: 1077 AAAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSM 1136
Query: 3388 TVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEM 3567
TV+ A D E AK + +E+T L+ +T T IYYDPD + TVI D + V ++ +
Sbjct: 1137 TVYQEPERAHDKEGAKQLRSAVEYTNLRSITEATEIYYDPDIQTTVIENDRDMVESYFII 1196
Query: 3568 PD---HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLV 3738
P+ D SR S WLLRI L R +++DK LT++ +A +I + D+ I++D+NA++ V
Sbjct: 1197 PEDVNDDSSRQSKWLLRIILSRAKLLDKGLTVQDVATKIKQAYPRDIAVIFSDNNADEQV 1256
Query: 3739 FRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 3918
R+R + K ++E D +E DV L+ +E ++L L L+G+P + + ++N +KK
Sbjct: 1257 IRIRQIQDYK---EDEDDDDIEYDVTLKKLEQHLLDTLNLRGVPGVERAFIN-----EKK 1308
Query: 3919 RIIITPEGGFKS------VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIE 4080
+I + +G +WILET G++L VL+ +D RT SN E+FEV GIE
Sbjct: 1309 KIRVQEDGALTDEQSDPLCREWILETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIE 1368
Query: 4081 AVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSF 4260
A R A+ RE V+SFDGSYVN+RHLALL DVMT +G+L +TRHGINR + GALMRCSF
Sbjct: 1369 AARAAVLREFTVVLSFDGSYVNHRHLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSF 1428
Query: 4261 EETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLD--------VEKCKYG- 4413
EETV+IL+EAA E D +GVSEN++LGQ+A GTG FD+ LD +YG
Sbjct: 1429 EETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNMLNTVVSNNARYGV 1488
Query: 4414 ---MEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSP-------TT 4563
+ ++ G GSP +S +P A +P +
Sbjct: 1489 MGALGAKDAIISDGAATQYDTGSPMQESAYIGTPDPDSNFSPIRQAGAETPGGFTEYQPS 1548
Query: 4564 GGMSPGAGFSPAGNTDGGASPFNEGGWSPASPG-DPLGALSPRTPSYGGMSPGV-----Y 4725
GG GFSPA + G SP + +P SPG P + SP +P G SP +
Sbjct: 1549 GGF---GGFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGF 1605
Query: 4726 SPSSPQF 4746
SP+SP F
Sbjct: 1606 SPASPSF 1612
Score = 50.1 bits (118), Expect = 6e-04
Identities = 34/93 (36%), Positives = 45/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWS 4647
SPS SP SP + +PT ++SPT+ SP + +SP GGA S
Sbjct: 1633 SPSYSPTSPGFSPTSPNYSPT--SPSFSPTSPAFSPTSPSYSPTSPAIGGARHL-----S 1685
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP P +P +P + SP YSP+SP F
Sbjct: 1686 PTSPTSP--KYTPTSPGWSPTSPQTYSPTSPNF 1716
Score = 48.1 bits (113), Expect = 0.002
Identities = 40/118 (33%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Frame = +1
Query: 4408 YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAG 4587
YG P + G SP+ SP+ SP + +PT ++SPT+ +
Sbjct: 1626 YGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPTSPAFSPT--SPSYSPTSPAIGGARH 1683
Query: 4588 FSPAGNTDGGASPFNEGGWSPASPG-----DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP T +P + G WSP SP P A SP +P G SPG YSP+SP F
Sbjct: 1684 LSPTSPTSPKYTPTSPG-WSPTSPQTYSPTSPNFAGSPTSPG-GPTSPG-YSPTSPAF 1738
>gi|11261194|pir||T43217 RNA polymerase (EC 2.7.7.-) II, largest chain
- Porphyra yezoensis (fragment)
gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit [Porphyra
yezoensis]
Length = 1685
Score = 1394 bits (3608), Expect = 0.0
Identities = 781/1613 (48%), Positives = 1023/1613 (63%), Gaps = 105/1613 (6%)
Frame = +1
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDK-SAPRVLEILKKTGTNSK 399
+CPGHFG +ELAKP+FH GF+ TLK+LRCVC++C RLLI K P V +ILK
Sbjct: 1 ECPGHFGFIELAKPMFHAGFMGMTLKLLRCVCYFCSRLLITKVDDPGVQKILKAVSKMES 60
Query: 400 K--RLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDI 573
+ RL ++ LC A+ + GCG QP Y+R G+ I
Sbjct: 61 RAARLRIMSGLCTARKCL---------------ITESPDGGASTGCGHEQPKYKREGLKI 105
Query: 574 NAEWKKNVNE----DTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXX 741
A++ + + ERK ++AE+VL VF++I+D D ++G+ ++ARPEW+I T
Sbjct: 106 RADFPDDGADVDGAPANERKQNVSAEKVLSVFKRISDNDAELMGLSARWARPEWLILTLL 165
Query: 742 XXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFH 921
+ + +DDLTH L+ I+K N L+ E +GA AH L + + LLQFH
Sbjct: 166 PVPPPHVRTSIMMDATQRGEDDLTHNLAVIVKNNTALRNLEGHGAPAHRLAEQIFLLQFH 225
Query: 922 VATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 1101
VAT ++N +PG+P A QK GRPLKSI QRLKGKEGR+RGNLMGKRVDFSARTVIT DPNL
Sbjct: 226 VATYMNNDLPGMPRAAQKSGRPLKSISQRLKGKEGRLRGNLMGKRVDFSARTVITPDPNL 285
Query: 1102 PIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHP 1269
+D VGVP +IA+NLTFPE VT +N++++Q+LV G +YP AK ++G +V+L Y
Sbjct: 286 RLDQVGVPFSIAKNLTFPETVTAYNIEEMQQLVENGPDEYPDAKYIQRDDGYQVNLAYVR 345
Query: 1270 RAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYN 1449
AD+ L+ GY+V RH+ +GD IVFNRQP+LHKMS+MGHR+K++P+STFR+NLSVTSPYN
Sbjct: 346 NRADVQLEIGYKVVRHITNGDFIVFNRQPSLHKMSIMGHRIKVMPYSTFRLNLSVTSPYN 405
Query: 1450 ADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 1629
ADFDGDEMNLH+PQ+ TRAE+ E+ MVPR +++PQ NKPVMGIVQDTL + T RD
Sbjct: 406 ADFDGDEMNLHVPQTHATRAEVMELMMVPRCIVSPQGNKPVMGIVQDTLLGCMLFTYRDT 465
Query: 1630 FIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSE 1809
F+ M LL+++ WDG +P PAI+KP+PLWTGKQ+FSL++P +VN++R +THPD E
Sbjct: 466 FLRRDVTMSLLLHVEGWDGVIPPPAIIKPEPLWTGKQLFSLLLP-DVNLVRYCNTHPDDE 524
Query: 1810 DSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQ 1989
+ ISPGDT+V+I GEL++GIV +TVG +A L+HV E G E S IQ
Sbjct: 525 STD----ISPGDTRVLIVGGELITGIVDKRTVGSAANGLIHVTWKEKGPERTCVLISAIQ 580
Query: 1990 TVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTL 2169
++N ++I G +IGIGDTIAD T +++ TI A+ +V + +A +L PG ++
Sbjct: 581 VLVNHYVIMRGQSIGIGDTIADAHTDANVRATITGAQAEVTQLERRAQEGELTLLPGKSM 640
Query: 2170 RQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNV 2349
++FE +VN++LN ARD +GSSAQ SL + NN INISQ+ ACVGQQNV
Sbjct: 641 MESFEVEVNKVLNGARDTSGSSAQLSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNV 700
Query: 2350 EGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 2529
EGKRI +GFR RTLPHF DD GPES+GFVENSYL GL PSEFFFHAMGGREGLIDTAVK
Sbjct: 701 EGKRISYGFRRRTLPHFRMDDLGPESRGFVENSYLIGLRPSEFFFHAMGGREGLIDTAVK 760
Query: 2530 TAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNN 2709
TAETGYIQRRL+KAME VMV YDGTVRNS + ++Q YGEDGLDG VE+Q + T++ N
Sbjct: 761 TAETGYIQRRLVKAMEDVMVKYDGTVRNSRSSVIQFLYGEDGLDGALVEDQKLDTLRSTN 820
Query: 2710 AVFERDFRMDLTDNKFLR-KNYSEDVVREIQESEDG---ISLVESEWSQLEEDRRL-LRK 2874
F + + + D +S V Q G V EE RL +
Sbjct: 821 DSFTKRYHLTEPDLHLQGVVQFSVLVAGGSQRYPLGRRRRGAVSQGVGTAEEGPRLPTPR 880
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGND- 3051
F G+AK+ L N++RLIWNA++IF V +LSP ++ GV L + +++ ++
Sbjct: 881 GFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 940
Query: 3052 --------------------------EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLN 3153
E+S+ AQ NATLL + +R++L +K + ++ +L
Sbjct: 941 AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT 1000
Query: 3154 SEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGV 3333
+AF WLL EIE+RFQQA+A GEMVGA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGV
Sbjct: 1001 RKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1060
Query: 3334 PRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDP 3513
PRL+EIINVSK KTPSL V+L G A D E+AK V +L+HTTL+ VT T +YYDPD
Sbjct: 1061 PRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVYYDPDL 1120
Query: 3514 KNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN 3693
+NT++ DEE VS +YE+PD D+ SPWLLR+ L + +VD+KL M I +RIH FG
Sbjct: 1121 ENTIVPADEELVSAYYELPD-DVVHASPWLLRLVLAKDMVVDRKLAMNTIKNRIHAHFGG 1179
Query: 3694 DVHTIYTDDNAEKLVFRLRIAGEDKGEA-----------QEEQVDK----MED-----DV 3813
D+H + ++DNA +LV R+R+A E++ +A E+ D+ MED D+
Sbjct: 1180 DLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDL 1239
Query: 3814 FLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTAL 3993
FLR +E+ +LS+LTL GIP I KV+ Q D K +I + G F +W+LETDG
Sbjct: 1240 FLRKVESQLLSNLTLSGIPGIDKVFTRQ----DNKIVIDSVTGSFTKENEWLLETDGVNF 1295
Query: 3994 LRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCD 4173
+ V+ +D RT SNDI E FEVLGIEAVR + E+ VISFDG+YVNYRHL++L D
Sbjct: 1296 IAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVLVD 1355
Query: 4174 VMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQL 4353
VMT +GHLMAI+RHGINR ALM+CSFEET DIL++AA+H E D + GVSE+IMLGQL
Sbjct: 1356 VMTFRGHLMAISRHGINRVSSSALMKCSFEETSDILLDAAMHGETDTLTGVSESIMLGQL 1415
Query: 4354 ARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHS-------PW 4512
A GTG F L L+ +E + S A S R ++P +
Sbjct: 1416 APLGTGSFGLFLNDAALTDAVEPETDAAASARIARSPAMPESERGYTPGREGQRTPGRAF 1475
Query: 4513 NSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFN-EGGWSP----------ASP 4659
++ +TPTY A+SP G FSPA GG SP N +SP A+P
Sbjct: 1476 DAAMTPTY---AYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP 1532
Query: 4660 G------DPLGALSPR----TPSYGGMSP--------------GVYSPSSPQF 4746
G P G +PR +P Y MSP G Y+P+SP +
Sbjct: 1533 GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLCGGPAGGAGAYAPASPAY 1585
Score = 47.8 bits (112), Expect = 0.003
Identities = 40/126 (31%), Positives = 53/126 (41%), Gaps = 34/126 (26%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSG---VTPTYAGAAWSPTTGGM-------------SPGAGFSPAG 4602
SP+ R F+P SP + G ++P + G GG SPG G+SP+
Sbjct: 1540 SPAGR-FTPRMSPASPGYAAMSPRFGGGLCGGPAGGAGAYAPASPAYMATSPGMGYSPST 1598
Query: 4603 NTDGGASPFNEGGWSPASP------GDPLGALSPRTPSYGGMSP------------GVYS 4728
+SP G+SP SP G G SP++P Y SP VYS
Sbjct: 1599 PALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS 1658
Query: 4729 PSSPQF 4746
PSSP +
Sbjct: 1659 PSSPAY 1664
Score = 39.3 bits (90), Expect = 1.1
Identities = 35/128 (27%), Positives = 49/128 (37%), Gaps = 20/128 (15%)
Frame = +1
Query: 4423 PQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGM---SPG--AG 4587
P M F G G P+ + A++P + T G +SP+T + SPG G
Sbjct: 1554 PGYAAMSPRFGGGLCGGPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG 1611
Query: 4588 FSPAGNTDGGASPFNEGGWSPASPG---------------DPLGALSPRTPSYGGMSPGV 4722
+SP + G G SP SPG SP +P+Y SP
Sbjct: 1612 YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPSSPNY 1671
Query: 4723 YSPSSPQF 4746
+ SSP +
Sbjct: 1672 AAASSPAY 1679
>gi|32417630|ref|XP_329293.1| hypothetical protein [Neurospora crassa]
gi|28925863|gb|EAA34861.1| hypothetical protein [Neurospora crassa]
Length = 1752
Score = 1391 bits (3601), Expect = 0.0
Identities = 751/1640 (45%), Positives = 1040/1640 (62%), Gaps = 67/1640 (4%)
Frame = +1
Query: 28 APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGVIDRRGRCM 201
APLR + +QFG+L PEEIK MSVAH+ +PE + KP+ GGL DP G +DR+ +C
Sbjct: 11 APLRTIKEIQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDRQFKCK 70
Query: 202 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 381
TC N+++CPGHFGH+ELA+PV+H GF+ + K+L VC C ++L D++ ++
Sbjct: 71 TCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRNDKEFAAAMRI 130
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVA-GGCGRYQPSYRR 558
+ K R ++ +CK K CE GGCG P+ R+
Sbjct: 131 R--DPKVRFNRVWAVCKKKRRCENEVVKKSDDDEFNPLADAKGELPGHGGCGNDHPTVRQ 188
Query: 559 VGIDINAEWKKNVNEDTQER-KIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICT 735
+ + A++ E + + K ++T E L + +T+ D++ IG++ ARPEWMI T
Sbjct: 189 QALTLYAQFDTKDEEGVKSKEKKIITPEMALNILHNMTESDMIDIGINISQARPEWMIIT 248
Query: 736 XXXXXXXXXXXXXXTFGSA---KNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
G+ +N+DDLT+KL DII+ N +++ G+ AH++ D
Sbjct: 249 VLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQAIQEGSPAHIINDFEN 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQ+HVAT +DN I G P A QK GRP+K+I+ RLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
D N+ +D VGVPR+IA+ LT+PE VTP+N+ KL + V G ++PGAK +G+RVD
Sbjct: 369 GDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEHPGAKYVIRSDGSRVD 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR+ R L L+ G++VERH+ DGD I+FNRQP+LHK SMMGHRVK++P+STFR+NLSV
Sbjct: 429 LRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSV 488
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
TSPYNADFDGDEMNLH+PQ+ ETRAE++E+ MVP +++PQ N P+MGIVQDTL +
Sbjct: 489 TSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGAYKL 548
Query: 1615 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 1794
+RDVF+ +M++++++P WDG +P PAILKP+P WTGKQ+ S+++P +N+
Sbjct: 549 CRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILKPRPRWTGKQIISMVVPKIINLKNI--- 605
Query: 1795 HPDSEDSG--PYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAA 1968
ED G P K D ++I+ GE++ G++ K VG ++G ++H+ ELG A
Sbjct: 606 ---DEDDGECPLK-----DKGILIQQGEVIFGLMTKKIVGAASGGIVHLCYNELGPSGAM 657
Query: 1969 NFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLE 2148
+F + Q V+N WL+ GH+IGIGDTI D AT +Q I AK +V + + A N+ LE
Sbjct: 658 DFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQLTDMATNNQLE 717
Query: 2149 PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIA 2328
P PG +R+TFENKV++ LN ARD+ G++ + SL + NN INISQ+ A
Sbjct: 718 PLPGMNIRETFENKVSKALNTARDKAGTTTESSLKDINNAVTMALSGSKGSSINISQMTA 777
Query: 2329 CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 2508
VGQQ VEGKRIPFGF++RTLPHF KDDY PE++GFVENSYL GLTPSEFFFHAM GREG
Sbjct: 778 LVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREG 837
Query: 2509 LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNM 2688
LIDTAVKTAETGYIQRRL+KA+E YDGTVRNSL ++Q YGEDGLDG+ +ENQ +
Sbjct: 838 LIDTAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLGDIIQFVYGEDGLDGIAIENQPV 897
Query: 2689 PTMKPNNAVFERDFRMDLTDNKFLRKNYSE-DVVREIQESEDGISLVESEWSQLEEDRRL 2865
+N F++ +R+D+ D + + +E+ L++ E+ QL DR +
Sbjct: 898 DHFTISNKAFDKRYRLDVMDEEVSSGELEALEYGKELASDPTVQELLDQEYEQLSVDRHM 957
Query: 2866 LRKI---FPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLII 3036
LR+I D K+ LP N+ R+I A+K+FKVD +L+P VI V+ + ++I+
Sbjct: 958 LREIQRTKGNNDTKMQLPLNIIRIIDTAKKLFKVDETARSDLTPKDVIPAVKAMLDRMIV 1017
Query: 3037 VSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQ 3216
V G+D ISK+A YNAT+L LRS L K + + ++N AF+ +LGE+E+R+ +++
Sbjct: 1018 VRGDDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELENRWSRSMVS 1077
Query: 3217 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVF 3396
PGEMVG LAAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEI+NV+ +KTPS+ V+
Sbjct: 1078 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASNIKTPSMMVY 1137
Query: 3397 LTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDH 3576
L AA E+AK + +EHT+L+ VT T IYYDPD +T I ED + V ++ +PD
Sbjct: 1138 LDSKAATQ-EEAKKMRSAVEHTSLRSVTAVTEIYYDPDITSTNIPEDYDLVESYFLIPDQ 1196
Query: 3577 D------LSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLV 3738
+ S WLLRI LDR++M+DK L +E +A RI + DV +++D+NAE++V
Sbjct: 1197 SGDEPDPIENQSRWLLRITLDRQKMLDKGLRVEDVAHRIKEVYKKDVAVVFSDNNAEEMV 1256
Query: 3739 FRLRI--AGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDD 3912
R+R+ A +DK E + + EDDV L+ +E ++L TL+G+ I + ++N+
Sbjct: 1257 IRIRVIKADDDKDEDGNKII---EDDVMLKRLEKHLLDGCTLRGVEGIERAFLNK----- 1308
Query: 3913 KKRIIITPEGGFK------SVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLG 4074
++I +G K +W L+T GT+L VL+ +D RTT+ND+ ++ +V G
Sbjct: 1309 GVKLIEAKDGSMKHSKVDDECQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFG 1368
Query: 4075 IEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRC 4254
IE R A+ E+ V++FDGSYVN+RHLALLCDVMT +G + A+TRHGINR + GALMRC
Sbjct: 1369 IEGARAALMHELTAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMRC 1428
Query: 4255 SFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKY-------- 4410
SFEETV+IL+EAA E D +G+SEN+MLGQ+A GTG FD+ LD + +
Sbjct: 1429 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGAFDVFLDPKMLETVISDNSRM 1488
Query: 4411 ----GMEIPQNVVMG-------------GGFYGSFAGSPSNREFSP-----AHSPWNSGV 4524
GM + + + G GF GS+ SP+ FSP + SP N+G
Sbjct: 1489 GLMPGMTVKGSQLDGAATPYDTGSPMADSGFLGSY--SPTMGNFSPIQGAGSDSPTNNGF 1546
Query: 4525 TPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGA-----SPFNEGGWSPASPGDPLGALSPR 4689
Y G GG G +S A + + SPF+ GG+SP+SP SP
Sbjct: 1547 GTDYGG------VGGYGSGTSYSSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPL 1600
Query: 4690 TPSYGGM-SPGVYSPSSPQF 4746
S G S +SPSSP F
Sbjct: 1601 LDSAGRFASSPQFSPSSPSF 1620
Score = 50.4 bits (119), Expect = 5e-04
Identities = 42/117 (35%), Positives = 53/117 (44%), Gaps = 16/117 (13%)
Frame = +1
Query: 4444 GGFYGSFAGSPSNREFSPAH---------SPWNSGVTPTY-----AGAAWSPTTGGMSPG 4581
G F S SPS+ FSP SP S +P+Y A A +SPT SP
Sbjct: 1605 GRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSPT----SPA 1660
Query: 4582 AGFSPAGNTDGGASPFNEGGWSPASPG--DPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
FSP + SP +SPASP + SP +P++ SP YSP+SP F
Sbjct: 1661 QQFSPTSPSYSPTSP----SYSPASPAFQATSPSYSPASPTWSPTSPDAYSPTSPSF 1713
Score = 41.2 bits (95), Expect = 0.29
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Frame = +1
Query: 4423 PQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPA 4599
P + ++ G S + SP++ +SPA SP + +PT +SPT+ SP + +SPA
Sbjct: 1622 PTSPMLRPGSPTSPSYSPTSPSYSPA-SPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPA 1680
Query: 4600 GNTDGGASPFNEGG---WSPASPG-----------DPLGALSPRTPSYGGMSPGVYSPSS 4737
SP WSP SP P LSP SP YSP+S
Sbjct: 1681 SPAFQATSPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQLSP-------TSPTGYSPTS 1733
Query: 4738 PQF 4746
PQ+
Sbjct: 1734 PQY 1736
>gi|12642616|gb|AAK00312.1| DNA-dependent RNA polymerase II largest
subunit RPB1 [Monoblepharis macrandra]
Length = 1603
Score = 1390 bits (3599), Expect = 0.0
Identities = 762/1568 (48%), Positives = 1009/1568 (63%), Gaps = 60/1568 (3%)
Frame = +1
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
+CPGHFGH+ELAKPVFH GF+T K+L VC +CG+L D S P + +K+ ++
Sbjct: 1 ECPGHFGHIELAKPVFHEGFVTTIKKLLESVCLFCGKLKSDDSDP---DFFRKSRLRDRR 57
Query: 403 -RLTMIYDLCKAKSVCEG----AAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGI 567
R T ++ LCK K VC+G A GGCGR QP R+ G+
Sbjct: 58 ARFTGVWSLCKTKMVCQGSEEDADEEQQQQQQQGANLLGRRKGAHGGCGRRQPKIRKEGL 117
Query: 568 DINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXX 747
+ A + K ED L ++V ++ QI+D D + +G++P+++RPEWMI T
Sbjct: 118 TLLAHYAKET-EDADLAPRPLLPDQVQKILLQISDADCVSLGLNPEWSRPEWMIITVLPV 176
Query: 748 XXXXXXXXXXTFGSA-KNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHV 924
G+ ++QDDLT+KL+DI+K N L+R+E +G HV+ + LLQ+HV
Sbjct: 177 PPPQVRPSVVGDGTGLRSQDDLTYKLADILKANASLKRHEQDGGPTHVVNEFWDLLQYHV 236
Query: 925 ATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLP 1104
AT++DN I GLP A QKGGRP+K I+QRLKGKEGR+RGNLMGKRVDFSARTVIT DPN+
Sbjct: 237 ATMMDNQISGLPVAQQKGGRPIKGIRQRLKGKEGRLRGNLMGKRVDFSARTVITGDPNIS 296
Query: 1105 IDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHPR 1272
ID VGVPR+I +NLTFPEIV +N D LQ+LV G +YPGA + NG V L++
Sbjct: 297 IDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEYPGANRVIRANGDIVSLKHTAG 356
Query: 1273 AADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNA 1452
+ + L G RVERH+ DGD I+FNRQP+LHKMSMMGH+V+++P+STFR+NLSVTSPYNA
Sbjct: 357 SGETLLNIGDRVERHLVDGDYIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNA 416
Query: 1453 DFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVF 1632
DFDGDEMNLH PQS ETRAEI EI VPRQ+I+P+ N+PVMGIVQDTLC +R T RD F
Sbjct: 417 DFDGDEMNLHAPQSYETRAEIMEIMRVPRQIISPKHNQPVMGIVQDTLCGIRKFTIRDNF 476
Query: 1633 IDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSED 1812
+ +M++LM++ WDG +P PAI+KP PLWTGKQ+ SL IP ++N++ +THPD E
Sbjct: 477 LSRDMVMNILMWVEDWDGVIPLPAIVKPVPLWTGKQMMSLAIP-DINLVGFSATHPDDEK 535
Query: 1813 SGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQT 1992
+S GDTKVIIE G +LSG +C KTVG SAG ++H + E G + A F++ Q
Sbjct: 536 GD----MSVGDTKVIIEGGTILSGTMCKKTVGSSAGGVIHTIMNEHGPDAAKKFFNGTQK 591
Query: 1993 VINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLR 2172
++N WL+ G ++GIGDTIAD T I +TI+KAK DV ++I+ A + L+ PG T+R
Sbjct: 592 IVNYWLLHNGFSVGIGDTIADGVTMQSITDTIKKAKADVAEIIKNAQANKLDAEPGMTVR 651
Query: 2173 QTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVE 2352
+TFE+KVN++LN ARD G A+KSL +NN INISQ+ ACVGQQNVE
Sbjct: 652 ETFESKVNKVLNKARDDAGKKAEKSLKIYNNVKQMVIAGSKGSFINISQMTACVGQQNVE 711
Query: 2353 GKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 2532
GKRIP+GFR+RTLPHF KDD+ PES+GFVENSYL GL+P EFFFHAMGGREGLIDTAVKT
Sbjct: 712 GKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKT 771
Query: 2533 AETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNA 2712
AETGYIQRRL+KA+E VMV YDGTVRNSL +VQ YGEDG+D VE Q + T++
Sbjct: 772 AETGYIQRRLVKALEDVMVKYDGTVRNSLGHVVQFVYGEDGMDATGVERQQLETIRMTEE 831
Query: 2713 VFERDFRMDL---TDNKFLRKNYSEDVVREI--QESEDGISLVESEWSQLEEDRRLLRK- 2874
F+R +++DL K+L + DV E+ ++ ++E E++QL EDR ++R
Sbjct: 832 EFKRRYKLDLMTPETRKWLPTVVTNDVRHELLGDGMDENAKVLEMEYTQLVEDRNVMRNF 891
Query: 2875 IFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
IF GD+ LP N++RLIWNA+ + K+ NL P ++ V +L + I+++G D
Sbjct: 892 IFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEEIVRDVNDLLSRCIVITGEDG 951
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
+S AQ+NATLL NIL+R L TK + + +LN AF WL+GEIESRF+ A P EMVG
Sbjct: 952 LSTMAQHNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVNPAEMVG 1011
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTG--- 3405
+AAQS+GEPATQMTLNTFH+AGV +KNVTLGVPRLKEIINV+ L+TPSL V L
Sbjct: 1012 TIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATNLRTPSLLVCLKANKD 1071
Query: 3406 AAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDL- 3582
D +AK + K+E+TTL K+ + +YYDPD +N+V+ D +W+ ++E+ D D
Sbjct: 1072 GRPLDLPQAKKIQAKIEYTTLGKLAVQSEVYYDPDLRNSVVEADRDWLDAYFEIEDADAL 1131
Query: 3583 -SRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG 3759
+R S W LRIE+DR R +DK ++M IA +I + + +H +++DDNA L +RI
Sbjct: 1132 QARLSSWALRIEIDRGRRIDKDISMSEIARKISSQYQDVLHVMHSDDNAPSLALVIRI-N 1190
Query: 3760 EDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPE 3939
+D+ + + +DV LR +E+ +++ L L GI I +VY+ ++ K + T
Sbjct: 1191 QDEAMQESLKESAQTEDVILRDVESQLMASLALGGITNIRRVYI----SEQKVAVQNTAT 1246
Query: 3940 GGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNV 4119
G + + ILETDG L V++ ++D RT SN EI+ VLGIEA R A+ +E+ V
Sbjct: 1247 GAIEQAQEHILETDGINLREVMAVEEVDFTRTYSNAPLEIYAVLGIEAGRAALLKEIRKV 1306
Query: 4120 ISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVH 4299
I FDGSYVNYRHLALL DVM KG LM+ITRHGINR E GAL R SFEETV+ILM+AA
Sbjct: 1307 IEFDGSYVNYRHLALLVDVMCQKGGLMSITRHGINRTENGALARSSFEETVEILMDAAGS 1366
Query: 4300 AEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG--- 4470
E D +GVSENI+LGQLA GTG FD++LD + + + + F+G
Sbjct: 1367 GETDICRGVSENIILGQLAPLGTGEFDVLLDEQVLEANARSATGGLYTNSYTADFSGGKT 1426
Query: 4471 -------SPSNREF---SPAHSPWNS--GVTPTYA--GAAWSPTTGGMSPG--AGFSPAG 4602
SPS +F SP +P+ + G P ++ G TG +PG G SP
Sbjct: 1427 PDHRAPMSPSGAQFYPASPGGAPYENYPGDQPMFSPIGVDSGRDTGRWTPGMSGGQSPYA 1486
Query: 4603 NTDGGASPFNEGGWSPASPGDPL--------------------GALSPRTPSYGGMSPGV 4722
+T P S SP P+ G +SP +P Y SP
Sbjct: 1487 STH-RCDPRLMNKRSLRSPSSPVYSMWLASFGLLQPFLIVRCFGVISPTSPGYSPTSPS- 1544
Query: 4723 YSPSSPQF 4746
YSP+SP +
Sbjct: 1545 YSPTSPSY 1552
Score = 41.6 bits (96), Expect = 0.22
Identities = 32/92 (34%), Positives = 43/92 (45%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SP SP++SP + TPT ++SPT+ SP SP +SP
Sbjct: 1535 SPGYSPTSPSYSPTSPSYTPT--SPSYSPTSPSYSP-------------TSP----SYSP 1575
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP + SP +PSY SP YSP+SP +
Sbjct: 1576 TSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1601
>gi|11261182|pir||T43026 probable DNA-directed RNA polymerase (EC
2.7.7.6) II largest chain - Bonnemaisonia hamifera
(fragment)
gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit
[Bonnemaisonia hamifera]
Length = 1732
Score = 1380 bits (3573), Expect = 0.0
Identities = 771/1581 (48%), Positives = 1021/1581 (63%), Gaps = 77/1581 (4%)
Frame = +1
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
+CPGHFGH+ELAKP+F+IGF+ +LKILRCVC YC +LL ++ +L K T +
Sbjct: 1 ECPGHFGHVELAKPMFNIGFINISLKILRCVCHYCSKLLCSSASVAILH--KITKPTDRM 58
Query: 403 RLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAE 582
R M + AK +C GGCG QP Y R G I A
Sbjct: 59 RTAMRFT-SGAKKLC----------------------TAEGGCGHMQPKYSRDGFRIRAI 95
Query: 583 WKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXX 762
++ E++ ERK +TAE+ +F++I++ + +G+ +++RPEW+I T
Sbjct: 96 FEDTA-EESAERKQTITAEKSYAIFKRISNSECEAMGLSWRWSRPEWLILTLLPVPPPQV 154
Query: 763 XXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDN 942
G +N+DDLT+KL DI+K N L+ EA GA AH + + + L+Q+HVAT ++N
Sbjct: 155 RPSVMR-GGLRNEDDLTNKLGDIVKNNNTLRNLEATGAVAHAIREQIDLVQYHVATYMNN 213
Query: 943 CIPGLPTATQKGG-RPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVG 1119
+PG+ AT +GG R +KSI QR KGKEGR+RGNLMGKRVDFSARTVIT DPNL + VG
Sbjct: 214 ELPGIMPATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLRLHEVG 273
Query: 1120 VPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLH 1287
VP +IA+NLT+PEIVT +N+D++Q+LV G +YPGAK E+G +V+L Y ++L
Sbjct: 274 VPFSIARNLTYPEIVTSYNIDEMQKLVENGPDEYPGAKYIEREDGFKVNLAYVRNRSELQ 333
Query: 1288 LQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGD 1467
L+ GY+V RH++DGD ++FNRQP+LHKMS+MGHR+++LP+STFR+NLSVTSPYNADFDGD
Sbjct: 334 LELGYKVIRHIRDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGD 393
Query: 1468 EMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPF 1647
EMNLH+PQ+ +TRAE++E+ +VP +++PQ NKPVMGIVQDTL + T+RD F++
Sbjct: 394 EMNLHVPQTHQTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLERDL 453
Query: 1648 MMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYK 1827
MM+LLM++ WDG +P+PAI KP+PLWTGKQVFSLI+P VN++R + THPD E +
Sbjct: 454 MMNLLMHVGDWDGVIPKPAIYKPRPLWTGKQVFSLILPP-VNIIRFNITHPDDEKTD--- 509
Query: 1828 WISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAW 2007
ISPGDTKV I G+L+ GIV +TVG SA L+H+ E G +I S IQ ++N +
Sbjct: 510 -ISPGDTKVYISRGQLICGIVDKRTVGSSANGLIHITWKEFGPKITDTLISQIQVLVNHY 568
Query: 2008 LIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFEN 2187
+++ +IGIGDTIAD AT ++ +TI+ AK++V ++ KA +L PG + ++FE
Sbjct: 569 ILQRRQSIGIGDTIADDATMRNVIDTIQGAKEEVKLLVRKAQEKELVLLPGKGMMESFET 628
Query: 2188 KVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIP 2367
+VN++LN ARD++G+SAQ+SL + NN INISQ+ ACVGQQNVEGKRI
Sbjct: 629 EVNKVLNGARDKSGASAQRSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRIA 688
Query: 2368 FGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 2547
+GF RTLPHF+ DD GPES+GFVENSYL GLTPSEFFFHAMGGREGLIDTAVKTAETGY
Sbjct: 689 YGFHRRTLPHFVLDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGY 748
Query: 2548 IQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERD 2727
IQRRLIKAME +MV YDGTVRNS +V+ YGED +D ++E+Q + T K ++ +
Sbjct: 749 IQRRLIKAMEDIMVRYDGTVRNSCNHIVEFLYGEDSMDATFLEDQVIRTAKMSDKKLRDE 808
Query: 2728 FRMDLTDNKF-----LRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK-IFPRG 2889
+ +D +D KF R ++V +++ + E+ Q+E DR+LLR I G
Sbjct: 809 YFIDPSDPKFGQDEKGRPYLDPNIVERVRQDAALHVELRLEFQQIEADRKLLRDYIIKTG 868
Query: 2890 DAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL-IIVSGN------ 3048
++K L N+ R+IWNA++ + +L P V+ GV L K+ ++V G+
Sbjct: 869 ESKRPLAVNVDRVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALEN 928
Query: 3049 -----------------------DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSE 3159
D + K+AQ NATLL I +RS L K + +L +
Sbjct: 929 AALEPGMEEDDEGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTFK 988
Query: 3160 AFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR 3339
AF WLLGE+E+RF PGE +GA+AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPR
Sbjct: 989 AFLWLLGEVENRFMMCRVAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1048
Query: 3340 LKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKN 3519
LKEIINVSK KTPSLTV+L A D EKAK++ L+HTTL VT T IYYDPDP +
Sbjct: 1049 LKEIINVSKNTKTPSLTVYLKSQYAGDKEKAKEIQASLQHTTLHDVTQCTEIYYDPDPMD 1108
Query: 3520 TVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDV 3699
TV+ D E VS F+++ + + SPWLLRI +D+ + D+K++M+ I + I FGNDV
Sbjct: 1109 TVVDADREMVSSFFDLEEAPVG-VSPWLLRIIMDKDMLQDRKISMDRIENMITQNFGNDV 1167
Query: 3700 HTIYTDDNAEKLVFRLRIA--------GEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLT 3855
H I + DN EK+V RLR+A GE+ G EE D+ DD FLR +E+ +LS +
Sbjct: 1168 HVIRSQDNDEKMVMRLRVADESAQEKCGEEGGADIEEDDDEDSDDTFLRRLESELLSQMN 1227
Query: 3856 LQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRT 4035
L GIPAI KV+M Q + + G KS +W+L+TDG LL V+S +D RT
Sbjct: 1228 LGGIPAIRKVFMRQ----SRFTFVDPGTGTHKSREEWVLDTDGVNLLAVMSHEAVDHTRT 1283
Query: 4036 TSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 4215
TSNDI EIFEVLGIEAVR+ + E+ VISFDG+YVNYRHLA+L D MT +GHLMAITRH
Sbjct: 1284 TSNDIVEIFEVLGIEAVREVLLNEIRGVISFDGAYVNYRHLAILVDTMTYRGHLMAITRH 1343
Query: 4216 GINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDV 4395
G+NR + G LM+CSFE T DIL+EAA+ E D ++GV+ENIMLGQLA GTG F L+L+
Sbjct: 1344 GVNRVDTGPLMKCSFEGTTDILLEAAMWGERDGLRGVTENIMLGQLAPIGTGSFRLLLNE 1403
Query: 4396 EKCKYGME---IPQNVVMGGG--------FYGSFAGSPSNREFSPAH-SPWNSGVTP--T 4533
+ K +E I MG G + G+ SP+ + +P +++ TP
Sbjct: 1404 KMLKDAIEPESIDAQASMGLGQSPAGNRTYEGASVWSPARGDATPGRKKAFDARATPGLL 1463
Query: 4534 YAGAAWS----PTT-----GGMSP---GAGFSPAGNTDGGA-SPFNEGGWSP-ASPGDPL 4671
Y+ AAW P T MSP GA FSP T GGA GG +P SPG
Sbjct: 1464 YSPAAWGTPLRPRTEQGLDQQMSPSADGAAFSPTPMTPGGAGGGGGMGGLTPLQSPGREY 1523
Query: 4672 GALSPRTPSYGGMSPGVYSPS 4734
P +P GG SP YS S
Sbjct: 1524 TV--PLSPGGGGTSP-FYSQS 1541
Score = 47.0 bits (110), Expect = 0.005
Identities = 42/112 (37%), Positives = 53/112 (46%), Gaps = 12/112 (10%)
Frame = +1
Query: 4441 GGGFYGSFA-GSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGM----SPGAGFSPAGN 4605
G G G+FA SP+ R SP SP+ + G +SP + +P S AG
Sbjct: 1566 GIGSSGTFAPASPAYRPTSPGPSPYAAQSPAQSPGVQYSPDKSRVQVQRAPPTAPSAAG- 1624
Query: 4606 TDGGASPFNEGGWSPASPG-DPLGALSP------RTPSYGGMSPGVYSPSSP 4740
GGAS +SP+SP + GA SP +P Y SPG YSPSSP
Sbjct: 1625 --GGAS----RSYSPSSPSYNGRGAASPGANYVAASPGYSPSSPGAYSPSSP 1670
Score = 46.6 bits (109), Expect = 0.007
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Frame = +1
Query: 4459 SFAGSPSNREFSPAHSPWNS------GVTPTYAGAAWSPTT-GGMSPG--AGFSPAGNTD 4611
S AG ++R +SP+ +N G A +SP++ G SP A FSP+
Sbjct: 1621 SAAGGGASRSYSPSSPSYNGRGAASPGANYVAASPGYSPSSPGAYSPSSPAAFSPSSPAA 1680
Query: 4612 GGASPFNEGGWSPASPGDPLGALSPR-TPSY-GGMSPG--VYSPSSPQF 4746
GG SP + A+ A SPR PSY G SP YSPSSPQ+
Sbjct: 1681 GGYSPSTPAYTANAAANQYSYARSPRYPPSYANGTSPSSPQYSPSSPQY 1729
Score = 39.3 bits (90), Expect = 1.1
Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Frame = +1
Query: 4441 GGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTG-GMSPGAGFSPAGNTDGG 4617
GGG G RE++ SP G +P Y+ + ++ + G SPG SP G G
Sbjct: 1507 GGGMGGLTPLQSPGREYTVPLSPGGGGTSPFYSQSPYASSPGYAQSPGRMQSPGG--AGA 1564
Query: 4618 ASPFNEGGWSPASPG--------DPLGALSPRTPSYGGMSPGV-YSP 4731
+ G ++PASP P A SP SPGV YSP
Sbjct: 1565 YGIGSSGTFAPASPAYRPTSPGPSPYAAQSP------AQSPGVQYSP 1605
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1
[Gibberella zeae PH-1]
gi|42544725|gb|EAA67568.1| hypothetical protein FG00916.1 [Gibberella
zeae PH-1]
Length = 1758
Score = 1380 bits (3572), Expect = 0.0
Identities = 750/1609 (46%), Positives = 1038/1609 (63%), Gaps = 38/1609 (2%)
Frame = +1
Query: 28 APLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGK--PKLGGLMDPRQGVIDRRGRCM 201
APL+ V +QFG++ PEEIK MSV H+ +PE + K P+ GGL D G IDR RC
Sbjct: 11 APLKTVEEIQFGLMSPEEIKNMSVCHIVYPETMDENKTKPRDGGLNDLLLGSIDRSFRCK 70
Query: 202 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 381
TC + +CPGHFGH+ELAKPV+H GF+ K KIL VC C ++L D P +
Sbjct: 71 TCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADSRDPEFAAAINT 130
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
+ K R +++ CK K CE GGCG QP+ R+
Sbjct: 131 R--DPKVRFHRVWEACKKKKRCENDEPKQKDDEFAATLKTGPLEG-HGGCGNVQPAVRQG 187
Query: 562 GIDINAEWKKNVNEDTQERK----IMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMI 729
+ + A ++ V+ED Q+ K I +T E + ++I++ED++ +G++ +ARPEWM+
Sbjct: 188 ALQLKAAFEVTVDEDGQKTKKKETIPITPETAHGILRRISEEDLVNMGLNSDYARPEWMV 247
Query: 730 CTXXXXXXXXXXXXXXTFGSA---KNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 900
T G+ +N+DDLT+KL DII+ N +++ G+ H+ D
Sbjct: 248 LTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDF 307
Query: 901 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 1080
LLQ+HVAT +DN I G P A QK GRP+K+I+ RLKGKEGR+RGNLMGKRVDFSARTV
Sbjct: 308 EELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTV 367
Query: 1081 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGAR 1248
IT D NL + VGVPR+IA+ LT+PE VTP+N++KL +LV G ++PGA + +G+R
Sbjct: 368 ITGDANLSLHEVGVPRSIARTLTYPETVTPYNIEKLHQLVENGPNEHPGAQYVVRPDGSR 427
Query: 1249 VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL 1428
+DLR+H RA + L+ G++VERH+ GD I+FNRQP+LHK SMMGHRV+++P+STFR+NL
Sbjct: 428 IDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNL 487
Query: 1429 SVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVR 1608
SVTSPYNADFDGDEMNLH+PQS ETRAE++E+ +VP +++PQ N P+MGIVQD+L
Sbjct: 488 SVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGAY 547
Query: 1609 MMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTH 1788
M +RDVF+ +M+ ++++P WDG +PQPAI KP+P WTGKQ+ S++IP V +
Sbjct: 548 KMCRRDVFLTKEQIMNCMLWVPNWDGVIPQPAIYKPRPRWTGKQLISMVIPKEVTIFNG- 606
Query: 1789 STHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAA 1968
DS +S P K D ++I+ G+L+ G++ K+VG SAG ++H+ ELG E A
Sbjct: 607 ---TDSGESAPLK-----DEGLLIQAGQLMYGLLTKKSVGASAGGIVHISYNELGPEGAM 658
Query: 1969 NFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLE 2148
F + +Q V+ WL++ GH+IGIGDTI D T +Q I K +V + A ++LE
Sbjct: 659 AFLNGVQQVVTYWLLQNGHSIGIGDTIPDAVTIAKVQAHIDDEKAEVARLTAMATANELE 718
Query: 2149 PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIA 2328
PG +R TFENKV+ LN ARD+ G++ QKSL + NN INISQ+ A
Sbjct: 719 ALPGMNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINISQMTA 778
Query: 2329 CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 2508
VGQQ VEGKRIPFGF++RTLPHF KDDY PE++GFVENSYL GLTPSEFFFHAM GREG
Sbjct: 779 LVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREG 838
Query: 2509 LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNM 2688
LIDTAVKTAETGYIQRRL+KA+E + YDGTVRNSL +VQ YGEDGLD M +ENQ +
Sbjct: 839 LIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGEDGLDAMIIENQKL 898
Query: 2689 PTMKPNNAVFERDFRMDLTD-NKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRL 2865
+ +N FE+ +R+DL + ++ + +Y + E+ ++L++ EW +L DR
Sbjct: 899 GILNMSNTAFEKKYRLDLANPPEWFKHDY--EFGNELTGDRPSMALLDEEWERLVHDRTR 956
Query: 2866 LRKI-FPRGDAKIV-LPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIV 3039
+R I +G+ +++ LP N+ R+I +A+++F V NL P VI V+ + + IV
Sbjct: 957 IRAINRAKGNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSDVIPAVQNMLDNMKIV 1016
Query: 3040 SGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQP 3219
G D IS +A NA++L LLRS L K + + +LN AFD +LGE+++R+ +A P
Sbjct: 1017 RGTDPISLEADANASILFKGLLRSRLAFKEVVKEHRLNRLAFDHILGELQNRWDRAFVNP 1076
Query: 3220 GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFL 3399
GEMVG LAAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEI+N++K +KTPS+ V+L
Sbjct: 1077 GEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKNIKTPSMAVYL 1136
Query: 3400 TGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD 3579
AK E+AK + +E+T L+ VT T IYYDP+ T I ED + V +Y +PD
Sbjct: 1137 NTPLAKQ-EQAKKLRSMVEYTNLRSVTSVTEIYYDPNVTETNIPEDLDMVESYYMIPDES 1195
Query: 3580 LSRT---SPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 3750
+ T S WLLRI LDR++++DK++ ++ +A RI + D+ I++D+NA++ V R+R
Sbjct: 1196 VDPTANQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPTDLAVIFSDNNADEQVIRIR 1255
Query: 3751 -IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQ----PNTDDK 3915
I DK + + +MEDDV L+ +EA++L LTL+G+P I + ++ + DD
Sbjct: 1256 TIHTGDKDD--DGDGGRMEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTKLSEDDDG 1313
Query: 3916 KRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKA 4095
+ I + W L+T GTAL VL+ +D RT +ND+ +I EV GIEA R A
Sbjct: 1314 ALLAIKDD---PRCTQWYLDTSGTALRDVLAVDGVDATRTYTNDLYQIVEVFGIEAARSA 1370
Query: 4096 IEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVD 4275
+ +E+ NV++FDGSYVN+RH+ALL DVMT +G + A+TRHGINR + GALMRCSFEETV+
Sbjct: 1371 LAKELTNVLAFDGSYVNHRHIALLVDVMTYRGVISAVTRHGINRADTGALMRCSFEETVE 1430
Query: 4276 ILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFY 4455
IL+EAA E D +G+SEN+MLGQ+A GTG FD++LD ++ + V+
Sbjct: 1431 ILLEAAATGELDDCRGISENVMLGQMAPMGTGNFDVLLD-------PKMLETVISDNSRM 1483
Query: 4456 GSFAGSPS-NREFSPAHSPWNSGVTPTYAG--AAWSPTTGGMSP--GAGF-SPAG-NTDG 4614
G AG P+ + + A +P+++G +G + SP G SP GAG +PAG +T
Sbjct: 1484 GLMAGMPTKSGDIEGAATPYDTGSPMADSGYLSMSSPAAGNFSPIQGAGSDTPAGFDTVY 1543
Query: 4615 GASPFNEGGWSPASP-----GDPLGALSPRTP-SYGGMSPGV-YSPSSP 4740
G GG +P SP P + SP +P SY SP + YSP+SP
Sbjct: 1544 GGGSVGFGGTTPMSPYNRGAASPFSSTSPTSPFSYSPTSPNMGYSPTSP 1592
Score = 52.8 bits (125), Expect = 1e-04
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Frame = +1
Query: 4423 PQNVVMGGGFYGSFAG-SPSNREFSPAHSPWNSGVTPTY-AGAAWSPTTGGMSPGAGFSP 4596
P + ++ GG G + SPS SP+ SP + + PT A ++SPT+ SP + SP
Sbjct: 1589 PTSPLIDGGGMGRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPSYSPTSPSYSPTSPSSP 1648
Query: 4597 AGNTDGGASPFNEG---GWSPASP-------------GDPLGALSPRTPSYGGMSPGVYS 4728
+ + FN +SPASP G + SP +PS+ SP YS
Sbjct: 1649 RHYSPTSPAQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPSYSPASPSWSPTSPEAYS 1708
Query: 4729 PSSPQF 4746
P+SP F
Sbjct: 1709 PTSPTF 1714
Score = 41.2 bits (95), Expect = 0.29
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Frame = +1
Query: 4471 SPSN-REFSPAH-SPWNSGVTPTYAGAA--WSPTTGGMSPGAG-----FSPAGNTDGGAS 4623
SPS+ R +SP + +NS +P+Y+ A+ +SPT+ + G +SPA + S
Sbjct: 1644 SPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPSYSPASPSWSPTS 1703
Query: 4624 PFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSP 4740
P SP P SP +PSY SP +SP +P
Sbjct: 1704 PEAYSPTSPTFQRSPTTQQSPTSPSYSPTSP-AFSPRTP 1741
>gi|12642610|gb|AAK00309.1| DNA-dependent RNA polymerase II largest
subunit RPB1 [Botryocladia uvarioides]
Length = 1712
Score = 1360 bits (3519), Expect = 0.0
Identities = 747/1559 (47%), Positives = 1001/1559 (63%), Gaps = 57/1559 (3%)
Frame = +1
Query: 226 CPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLI-DKSAPRVLEILKKTGTNSKK 402
CPGHFGH+ELAKP+++IGF+ TL +LRCVC +C ++L D + +L+I K T
Sbjct: 1 CPGHFGHIELAKPMYNIGFIKTTLSVLRCVCHFCSKILCPDATVQSLLKISKPT-----V 55
Query: 403 RLTMIYDLCKA-KSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINA 579
RL C K +C G CG QP Y R G I
Sbjct: 56 RLRNAMKYCSGTKKICTGD----------------------NSCGNLQPKYTREGFRIRQ 93
Query: 580 EWKKNVNEDTQE-RKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
++ N E ++E +K L+AE+V ++F++I+D D L +G+DP++ RPE +I T
Sbjct: 94 QFDDNHEEYSKENKKPSLSAEKVYDIFKRISDRDSLALGLDPRWVRPENLILTVLPVPPL 153
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
G +N+DDLT+KL DI+K N L+ EA G AH+L + + L+Q+HVAT +
Sbjct: 154 QVRPSVM-HGGLRNEDDLTNKLGDIVKNNNMLRDMEAQGTVAHLLREQLDLVQYHVATYM 212
Query: 937 DNCIPGLPTATQKGG-RPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDT 1113
+N IPG+ AT +GG R +KSI QR KGKEGR+RGNLMGKRVDFSARTVIT DPNL +
Sbjct: 213 NNEIPGVSQATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLLLHE 272
Query: 1114 VGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAAD 1281
VGVP +IA+NLTFPE VT +N ++++LV G T+YPGAK ++G +V+L Y
Sbjct: 273 VGVPYSIAKNLTFPETVTSYNYAEMRKLVENGPTEYPGAKYIERDDGQKVNLSYVADRTS 332
Query: 1282 LHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFD 1461
+L+ G++V RH+KDGD ++FNRQP+LHKMS+MGHR+++LP+STFR+NLSVTSPYNADFD
Sbjct: 333 TNLEIGFKVIRHIKDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFD 392
Query: 1462 GDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDW 1641
GDEMNLH+PQS TRAE++E+ +VP +++PQ NKPVMGIVQDTL + T+RD FI+
Sbjct: 393 GDEMNLHVPQSHGTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIER 452
Query: 1642 PFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGP 1821
MM+LLM++ WDG VP+PAI KP+PLWTGKQ+FSLI+P VN++R + THPD E
Sbjct: 453 DVMMNLLMHVGDWDGVVPEPAIYKPRPLWTGKQIFSLILPP-VNLIRYNITHPDEEQEE- 510
Query: 1822 YKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVIN 2001
ISPGDTKV I G+L+ GIV KTVG SA L+HV E G ++ A S IQ ++N
Sbjct: 511 ---ISPGDTKVYISQGQLICGIVDKKTVGSSANGLIHVTWKECGPKVTAMMISQIQVLVN 567
Query: 2002 AWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTF 2181
++++ G +IGIGDTIAD T ++ NTI+ AK++V +I+KA +L PG + ++F
Sbjct: 568 HYVLQRGQSIGIGDTIADDDTMSNVINTIKGAKEEVKMLIKKAQMKELVLLPGKGMMESF 627
Query: 2182 ENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKR 2361
E +VN++LN ARD++G+SAQKSL + NN INISQ+ ACVGQQNVEGKR
Sbjct: 628 ETEVNKVLNGARDKSGASAQKSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKR 687
Query: 2362 IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 2541
I +GF RTLPHF DD GPES+GFVENSYL GLTPSEFFFHAMGGREGLIDTAVKTAET
Sbjct: 688 IAYGFNGRTLPHFATDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAET 747
Query: 2542 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFE 2721
GYIQRRLIKAME VMV YDGTVRNS +V+ YGEDG+D +E+Q + T+K ++
Sbjct: 748 GYIQRRLIKAMEDVMVRYDGTVRNSANHVVEFLYGEDGMDATLLEDQTLRTLKMSDERLF 807
Query: 2722 RDFRMDLTDNKFLRKNYSE-----DVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPR 2886
++ +D TD KF + + + I++ L+ +E+ ++ EDR LLR +
Sbjct: 808 DEYYLDPTDAKFGKDSRGRPYLDWETCDSIRQDAQAHILLRNEFQRIREDRDLLRNFIAK 867
Query: 2887 -GDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDE--- 3054
G+AK + N+ R+IWNA++ + +L+P+ V G++ L K+ +V D+
Sbjct: 868 SGEAKRPMAVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQDD 927
Query: 3055 -----------------------ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAF 3165
++ + Q NAT++ I +RS L K + + +L+ AF
Sbjct: 928 EDVDDGVTDENGEMIDRKPVADPLTLETQENATMIFQIHVRSMLACKQVMVRHRLDINAF 987
Query: 3166 DWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 3345
W+LGEIE+RF AIA PGE +GA+AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+
Sbjct: 988 LWILGEIENRFLGAIAAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLR 1047
Query: 3346 EIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTV 3525
EIINVSK KTPSLTV+L +KD KAK++ L+ T L VT +TAIYYDPDP+ TV
Sbjct: 1048 EIINVSKHTKTPSLTVYLRDKYSKDKGKAKEIQASLQATNLYDVTTSTAIYYDPDPETTV 1107
Query: 3526 IAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHT 3705
I ED E V FYE+ D S +PWLLRI LD++ ++D+ + M+ I + + FG+D+H
Sbjct: 1108 IEEDREMVHSFYEVEDVP-SDVAPWLLRITLDKEILIDRGIGMDHIENMMQQNFGDDIHI 1166
Query: 3706 IYTDDNAEKLVFRLRI----------------AGEDKGEAQEEQVDKMEDDVFLRCIEAN 3837
+ + DN E+LV RLR+ G D G +++ D DD FLR +E+
Sbjct: 1167 VRSTDNDERLVIRLRVHDEGANIKYAEDGRREEGIDTGMDIDDEDDDDTDDAFLRTLESE 1226
Query: 3838 MLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQ 4017
+L+ + L GI I KV+M Q K++ I G +K+ +W+L+TDG L V+
Sbjct: 1227 LLNKMPLGGIKDIHKVFMRQA----KRQYIDKEYGKYKTDEEWVLDTDGVNLKAVMCHEA 1282
Query: 4018 IDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 4197
+D RT SNDI EIFE LGIEAVR+A+ +E+ VISFDG+YVNYRHL++L DVMT +GHL
Sbjct: 1283 VDHTRTMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYVNYRHLSILVDVMTYRGHL 1342
Query: 4198 MAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCF 4377
MAITRHGINR + G LM+CSFEET DIL+EAA D ++GVSENI+LGQLA GTG F
Sbjct: 1343 MAITRHGINRVDTGPLMKCSFEETTDILLEAATFGMRDNLQGVSENIVLGQLAPVGTGSF 1402
Query: 4378 DLVLDVEKCKYGMEI-PQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWS 4554
++L+ + + +E P G + + +SPA G+ G
Sbjct: 1403 KMMLNEKMLQQAIETEPAQQDAADGAMDQSGTNSFDMAWSPARGDATPGLHRPMDGRTTP 1462
Query: 4555 PTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSP 4731
G +P S G+T GG S FN +SP S + + SP TP G + Y+P
Sbjct: 1463 GLRTGYTPMWAPSRMGSTRGGPSAFNVQQFSP-SADEASFSPSPATPGNFGQNANAYTP 1520
Score = 42.4 bits (98), Expect = 0.13
Identities = 39/104 (37%), Positives = 45/104 (42%), Gaps = 18/104 (17%)
Frame = +1
Query: 4489 FSPAHSPWNSGVTPT---YAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASP 4659
F+PA SP +P Y GA SP SPGA +SP T +P + G S P
Sbjct: 1571 FAPA-SPAYKVTSPAPGGYGGAYQSPAR---SPGAQYSP---TSPAFTPTSPGYSSATGP 1623
Query: 4660 GDP-LGALSPRTPSYGGM--------------SPGVYSPSSPQF 4746
G P GA SP PSY SP YSP+SP F
Sbjct: 1624 GRPGTGAYSPTGPSYNAAASPGYQSGINYSPGSPHTYSPNSPVF 1667
>gi|38104302|gb|EAA50893.1| hypothetical protein MG04652.4
[Magnaporthe grisea 70-15]
Length = 1745
Score = 1339 bits (3465), Expect = 0.0
Identities = 727/1638 (44%), Positives = 1025/1638 (62%), Gaps = 58/1638 (3%)
Frame = +1
Query: 7 LVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGVI 180
L+ APL+ + +QFG+L PEEIK MSV HV++P+ + KP+ GGL DP G
Sbjct: 4 LIFAPSSAPLKTIEEIQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTT 63
Query: 181 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 360
DR+ +C TC ++ +CPGHFGH+ELAKPV+H GF+ KT KIL + D+ +
Sbjct: 64 DRQYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILE--------MNNDEQFAQ 115
Query: 361 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRY 540
L + + K R M++ CK K VCE GGCG
Sbjct: 116 ALRL-----RDPKARFAMVWKACKGKKVCE-IETGGKDEKDSIDTATGIEKVPHGGCGST 169
Query: 541 QPSYRRVGIDINAEWKKNVNEDTQERKI---MLTAERVLEVFQQITDEDILVIGMDPQFA 711
P R+ + + A+ ++ E+ ++++ ++T E+ + + I ++D+ +G++ +A
Sbjct: 170 HPDIRKKALQLYAKVEE-AREEGMKKEVKDKLITPEQAHHILKHIPEDDLWKMGLNKDYA 228
Query: 712 RPEWMICTXXXXXXXXXXXXXXTFGSA---KNQDDLTHKLSDIIKTNQQLQRNEANGAAA 882
RPEW+I T G++ +++DDLT+KL DII+ N +++ A GA
Sbjct: 229 RPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAPN 288
Query: 883 HVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVD 1062
H+ T+ LLQ+HVAT +DN I +P + QK GRP+KSI+ RLKGKEGR+RGNLMGKRVD
Sbjct: 289 HICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVD 348
Query: 1063 FSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK--- 1233
FSARTVIT D N+ + VGVPR+IA+ LT+PE VTP N+D+L + V G ++PGAK
Sbjct: 349 FSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAKYIV 408
Query: 1234 -ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS 1410
+G R+DLR+ L+ G +VERH+ GD I+FNRQP+LHK SMMGH+V+++P+S
Sbjct: 409 RTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYS 468
Query: 1411 TFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQD 1590
TFR+NLSVTSPYNADFDGDEMNLH+PQ+ ETRAE++E+ MVP +++PQ N P+MGIVQD
Sbjct: 469 TFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQD 528
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL + +RDVF+ +MD+++++P WDG +PQPAIL+P+P WTGKQ+ S++IP V
Sbjct: 529 TLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPRPRWTGKQIISMVIPDFV 588
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
+TH + W D ++I+ GEL+ G++ K VG ++G ++H+ E
Sbjct: 589 ------TTHQGGD------WNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHICYNEQ 636
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G A F + Q V+N WL+ GH+IGIGDTI D T IQ I + K +V ++ + A
Sbjct: 637 GPARAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHINEQKAEVAELTDLA 696
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
+ LE PG +R+TFE+KV++ LN AR++ G++ +KSL + NN IN
Sbjct: 697 TTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSRSGSKGSSIN 756
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQ+ A VGQQ VEGKRIPFGF++RTLPHF KDD+ PE++GFVENSYL GLTPSEFFFHA
Sbjct: 757 ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRGLTPSEFFFHA 816
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
M GREGLIDTAVKTAETGYIQRRL+KA+E V YDGTVRNSL ++Q YGEDGLDGM
Sbjct: 817 MAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGLDGMA 876
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
+E Q M + +N F+ +++DL R+ + + EI L++ E+ ++
Sbjct: 877 IEKQKMDHLNISNGKFDGMYKLDLMTATRPRELNALEYGNEIFGDPAVQQLLDEEYDAIK 936
Query: 2851 EDRRLLRKI--FPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSK 3024
DR+L+R+I + D + LP N+ R+I NA+K+FK+D + +L P VI V+ +
Sbjct: 937 ADRQLIREINYKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQDVIPVVKGFLE 996
Query: 3025 KLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQ 3204
++++V G+D ISK+A YN+++L LRS L K + + +LN AFD ++GE+ESR+Q+
Sbjct: 997 RMVVVPGDDPISKEANYNSSILFKAQLRSRLAFKRLAVRERLNRIAFDHVIGEMESRWQR 1056
Query: 3205 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPS 3384
+ PGEMVG LAAQS+GEPATQMTLNTFH+ G+S+KNVTLGVPRLKEI+NVS +KTP
Sbjct: 1057 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNVSAEIKTPG 1116
Query: 3385 LTVFLTGAAAKD--PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIF 3558
+ V L D E AK + +EHT L+ VT T IYYDP+ + T I ED + +
Sbjct: 1117 MVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVTAMTEIYYDPEIQTTTIDEDADMLEGH 1176
Query: 3559 YEMPDH---DLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAE 3729
Y +P+ + S S WLLR+ LDR++M+DK L +E +A I G + +D+ +++D+NA+
Sbjct: 1177 YLIPEEHQDEPSNQSRWLLRLTLDRQKMLDKNLHIEDVAASIKGAYASDLVVVHSDNNAD 1236
Query: 3730 KLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTD 3909
+ V R+R KG+ +++ +E D L+ +E +ML LTL+GI I + ++N+
Sbjct: 1237 EQVIRMRHV--IKGDEEDKDGRNIESDQILKRLEEHMLDGLTLRGIKGIERAFLNKDT-- 1292
Query: 3910 DKKRIIITPEGGFKSVAD------WILETDGTALLRVLSERQIDPVRTTSNDICEIFEVL 4071
R+++ P+G + D W L+T GT+L +VL +D VRT +ND+ +I ++L
Sbjct: 1293 ---RLVVKPDGSLLNSKDAPECEEWYLDTQGTSLRQVLCVDGVDSVRTLTNDLYQIVDLL 1349
Query: 4072 GIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 4251
GIEA R A+ E+ V++FDGSYVN+RHLALL DVMT +G + A+TRHGINR + GALMR
Sbjct: 1350 GIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMR 1409
Query: 4252 CSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK-------- 4407
CSFEETV+IL+EAA E D +G+SEN+MLGQLA GTG F+++LD + +
Sbjct: 1410 CSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGAFEVLLDPKMLETVVSNNAR 1469
Query: 4408 --------------YGMEIPQNV--VMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPT-Y 4536
G P + MG Y SP+ FSP S TPT +
Sbjct: 1470 MGLMPGLTVKGSSAEGAATPYDTGSPMGDSGYNLGMASPTMGNFSPIMS--GGSDTPTGF 1527
Query: 4537 AGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFN--EGGWSPASPGDPLGALSPRTP---- 4695
A + G M+P G+G SP + SP + G+ SP P+ SP +P
Sbjct: 1528 ATEYGGGSLGSMNPYGSGTSPRPTSPFSTSPTSPFSAGYGSYSPTSPMAGYSPTSPMMDG 1587
Query: 4696 -SYGGMSPGVYSPSSPQF 4746
YG SP +SPSSP F
Sbjct: 1588 GRYGASSPS-FSPSSPSF 1604
Score = 48.9 bits (115), Expect = 0.001
Identities = 46/141 (32%), Positives = 58/141 (40%), Gaps = 33/141 (23%)
Frame = +1
Query: 4423 PQNVVMGGGFYGSFAGS--PSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAG--- 4587
P + +M GG YG+ + S PS+ F P G + + SPT SP G
Sbjct: 1580 PTSPMMDGGRYGASSPSFSPSSPSFQPTSPIMRHGAGDSMGYSPTSPTYQPGSPTGGDNH 1639
Query: 4588 FSPAGNTDGGASP-----------FNEGG--------WSP--ASPGDPLGALSPRTPSY- 4701
+SP GASP F+ GG SP ASP P SP +PS+
Sbjct: 1640 YSPTSPAQFGASPTSPLYSPASPSFSPGGATSPMYYVGSPQHASPTSPNAHYSPTSPSFQ 1699
Query: 4702 ------GGMSPGVYSPSSPQF 4746
SPG YSP+SP F
Sbjct: 1700 RSPAQASPTSPGPYSPTSPSF 1720
Score = 39.3 bits (90), Expect = 1.1
Identities = 39/116 (33%), Positives = 50/116 (42%), Gaps = 25/116 (21%)
Frame = +1
Query: 4468 GSPS--NREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSP---------AGNTDG 4614
GSP+ + +SP SP G +PT +SP + SPG SP A T
Sbjct: 1631 GSPTGGDNHYSPT-SPAQFGASPT--SPLYSPASPSFSPGGATSPMYYVGSPQHASPTSP 1687
Query: 4615 GA-----SPFNEGGWSPASPGDPLGALSPRTPSYGGMSPG---------VYSPSSP 4740
A SP + + ASP P G SP +PS+ SPG YSP+SP
Sbjct: 1688 NAHYSPTSPSFQRSPAQASPTSP-GPYSPTSPSFSPRSPGRNNRSGGQDSYSPTSP 1742
>gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit
[Mastigoproctus giganteus]
Length = 887
Score = 1331 bits (3445), Expect = 0.0
Identities = 639/886 (72%), Positives = 752/886 (84%), Gaps = 4/886 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID VG+PR+IAQNLTFPEIVTPFN+DK+ ELV RG+ QYPGAK
Sbjct: 1 SARTVITPDPNLRIDEVGIPRSIAQNLTFPEIVTPFNIDKMHELVRRGNNQYPGAKYIIR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG R+DLR+HP+A+DLHLQ GY+VERH+K+GD+++FNRQPTLHKMSMMGH++++LPWST
Sbjct: 61 DNGERIDLRFHPKASDLHLQCGYKVERHVKNGDVVIFNRQPTLHKMSMMGHKIRVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FR+NLSVT+PYNADFDGDEMNLH+PQSLETRAE++E+A+VPRQ+ITPQ+NKPVMGIVQDT
Sbjct: 121 FRLNLSVTTPYNADFDGDEMNLHVPQSLETRAEVQELALVPRQIITPQSNKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF++ MM+LLM+LP WDGK+P PA+LKPKPLWTGKQ+FSLIIP NVN
Sbjct: 181 LTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAVLKPKPLWTGKQLFSLIIPDNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
++RTHSTHPD ED GPYKWISPGDTKV+IEHG+L+SGIVC KTVG ++G+L+HVV ELG
Sbjct: 241 LIRTHSTHPDDEDDGPYKWISPGDTKVLIEHGQLISGIVCKKTVGSASGSLMHVVFAELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+E+A FY HIQTV+N WL+ EGHTIGIGDTIAD TY+DIQNTI+KAK DV++VIEKAH
Sbjct: 301 HEVAGAFYGHIQTVVNNWLLLEGHTIGIGDTIADPQTYIDIQNTIKKAKHDVIEVIEKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG+SAQKSLSEFNNF INI
Sbjct: 361 NDELEPTPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVM YDGT+RNS Q++QLRYGEDGLDG V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTIRNSTGQVIQLRYGEDGLDGSAV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q++PT+KP+N FE+ FR D + + LR+ ++EDVVR++ S +S +E EW +L++
Sbjct: 541 EFQSLPTLKPSNKAFEKRFRFDAANERHLRRIFTEDVVRDLLGSATALSELEKEWERLKK 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLI 3033
DR +LR +FP GD+K+VLPCNLQR+IWNAQKIF+V+ R P +LSP VI GV +L KKLI
Sbjct: 601 DREVLRTVFPTGDSKVVLPCNLQRMIWNAQKIFRVNARAPTDLSPFRVIHGVEDLVKKLI 660
Query: 3034 IVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIA 3213
IV G D +S QA NATLL LLRSTLCTK + + +L+SEAF+WLLGEI++RFQQA
Sbjct: 661 IVPGEDRLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEWLLGEIDTRFQQAQV 720
Query: 3214 QPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTV 3393
QP AGVSAKNVTLGVPRLKEIIN+SK KTPSLTV
Sbjct: 721 QPXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAKNVTLGVPRLKEIINISKRPKTPSLTV 780
Query: 3394 FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPD 3573
FLTGAAA+D EKAKDVLC+LEHTTL+KVT NTAIYYDPDP+NTVIAED+E+V+++YEMPD
Sbjct: 781 FLTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPD 840
Query: 3574 HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIY 3711
D SR SPWLLRIELDRKRM DKKLTME IA++I+ GFG+D++ I+
Sbjct: 841 FDPSRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIF 886
>gi|46228363|gb|EAK89262.1| putative DNA-directed RNA
polymerase,possible RNA polymerase A/beta'/A'' subunit,
long PHYSPTS repeat at C-terminus [Cryptosporidium
parvum]
Length = 1902
Score = 1327 bits (3433), Expect = 0.0
Identities = 736/1649 (44%), Positives = 1029/1649 (61%), Gaps = 88/1649 (5%)
Frame = +1
Query: 34 LRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAG 213
L+ V ++FG+L PE I++ SV ++ ++YENG+PK GGL DP G D C TC
Sbjct: 23 LKRVFSIEFGVLSPELIRKYSVLEIKVSDIYENGRPKSGGLNDPLLGTTDYHILCETCHM 82
Query: 214 NLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTN 393
++ CPGHF H+EL KP+FHIGF+T LK+LRCVC+ C +L +D P+ +I K N
Sbjct: 83 DIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFVDTLDPKFKQI--KRIKN 140
Query: 394 SKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDI 573
+ RL I ++ + S C GCG QP+Y + G ++
Sbjct: 141 PRLRLKKILEMRSSSSRC-------------------IISSDGSGCGFVQPTYSKEGYNL 181
Query: 574 ----NAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXX 741
N + + +++++ + K +L AE VL +F++I+ +D+ ++G DP P W I T
Sbjct: 182 YINQNQDENRIIDDESVDSKRLLAAEEVLTIFKRISHDDMKILGFDPVKCNPSWFINTVI 241
Query: 742 XXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFH 921
FGS +++DDLT KL IIK N+ L++ G+ H++++ +LQ+H
Sbjct: 242 PIPPPAVRPYVQ-FGSDRSEDDLTLKLQQIIKLNENLKKQIRIGSPEHIISEMSTVLQYH 300
Query: 922 VATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 1101
+ TL++N +PGLP + + RP+KS++ RLKGK+GRIRGNLMGKRVDFSARTVIT DPNL
Sbjct: 301 LITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDFSARTVITGDPNL 360
Query: 1102 PIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHP 1269
+D VGVP +IA LT+PE+VTP+N+++L+ELV RG ++PGA +E+G +VDLR+
Sbjct: 361 AVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATSIIQEDGTKVDLRFSN 420
Query: 1270 RAADLH--LQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+ + + LQ G++VERHMK+ D+++FNRQP+LHKMS+MGHRVKILP+STFR+NLSVTSP
Sbjct: 421 TSNNSNNILQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSP 480
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLHL QS ETR+EI+ + MVPRQ+++PQ NKPV+GIVQD+L + ++T++
Sbjct: 481 YNADFDGDEMNLHLAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRK 540
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLII--------PGNVNVL 1779
F+ + LL+ +P W+G +P PAIL+P+PLWTGKQ+ ++++ P +N++
Sbjct: 541 STFLTRDKFLQLLLCIPYWNGNIPPPAILRPQPLWTGKQIITVLLAFTTDLGEPIELNLM 600
Query: 1780 R----------THSTHPDSEDSGP----YKWISPGDTKVIIEHGELLSGIVCSKTVGKSA 1917
R +S++ D +DS WIS D +VII+ GE + G++ K G S+
Sbjct: 601 RDGSIVSIKQSNNSSNTDKDDSKEAIVNNPWISELDNQVIIQKGEHICGVLTKKIAGSSS 660
Query: 1918 GNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKA 2097
G+L+H++ E+G E F ++ Q V+N WL+ G T+G D T I N++ +
Sbjct: 661 GSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGS 720
Query: 2098 KQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSL-SEFNNFXX 2274
K V +I +A L+ PG +L ++FE +VNQ LN AR+ +G+ A ++L S NN
Sbjct: 721 KLQVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQELNSARELSGTIATENLDSSKNNIVA 780
Query: 2275 XXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYL 2454
INISQ++ACVGQQNVEGKRIPFGFR R+LPHF+K DYGPES+GFV NSYL
Sbjct: 781 MVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVSNSYL 840
Query: 2455 AGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQ 2634
+GLTP E FFHAMGGREG+IDTA KT+ETGYIQRRLIKAME MV YD TVRNS ++Q
Sbjct: 841 SGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVRNSNGDIIQ 900
Query: 2635 LRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRK--NYSEDVVREIQESE 2808
YGEDG+ G ++E+Q + ++ AVF+ +R +L ++ +++ +Q
Sbjct: 901 FLYGEDGMAGEFIEDQVIELLQMEAAVFQHKYRHNLEHPRWGSSWAGVQPSLIKNLQFDL 960
Query: 2809 DGISLVESEWSQLEEDRRLLRK-IFPRGDAKIVLPCNLQRLIWNAQKIFK---VDLRKPV 2976
+ +++ SE+ QL DR L K IFP G+ + LP N+ R+I AQ+ F D
Sbjct: 961 ESQNILNSEYKQLVTDREQLGKDIFPDGETRQHLPININRIIQMAQQKFPQRVSDTSSSK 1020
Query: 2977 NLSPLHVISGVRELSKKLII--------VSGN------DEISKQAQYNATLLMNILLRST 3114
+ P+++I V L KL++ GN D I + Q NAT L+ I +RS+
Sbjct: 1021 DWGPVYIIKKVESLLDKLLLWKNVGIINDEGNKSNFVFDSIIAEVQKNATTLLGIHIRSS 1080
Query: 3115 LCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 3294
L +K + +L AF+W+LGEIE +F +++A GEMVG +AAQS+GEPATQMTLNTFH
Sbjct: 1081 LASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFH 1140
Query: 3295 YAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKK 3474
+AGV +KNVTLGVPRL+E+INV+K ++TP+LTV+L A D E+AKDVL LEHT L+
Sbjct: 1141 FAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQEQAKDVLTLLEHTMLQN 1200
Query: 3475 VTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD--LSRTSPWLLRIELDRKRMVDKKL 3648
+T I YDP+ T++ D+ WVS +YE PD SR WLLRI+L+ K + DKKL
Sbjct: 1201 ITTIAHILYDPEQDKTIVEADKSWVSDYYEFPDDADITSRLGTWLLRIQLNNKLVTDKKL 1260
Query: 3649 TMEMIADRIHGGFGND-VHTIYTDDNAEKLVFRLRI--------------AGEDKGEAQE 3783
+M+ I D+I F D + I+TDDN+++LV RLRI + E+
Sbjct: 1261 SMKEIGDKILMEFSKDELDCIWTDDNSDELVLRLRIKNIEPTNNIRDNIHSSEENDSISP 1320
Query: 3784 EQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVAD 3963
+E+ FL + LS +TL+GI I KVYM + + K V D
Sbjct: 1321 SITSGVEEHKFLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSV------SQKMVRD 1374
Query: 3964 --WILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGS 4137
W+L+TDG L VL ID RT SNDI E+F VLGIEAVR+A+ RE+ VISFDGS
Sbjct: 1375 NQWVLDTDGCNLEAVLCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGS 1434
Query: 4138 YVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPV 4317
YVNYRHLALLCD MT KGHLM+ITRHGINR + G L +CSFEETV++LM+AA+ E D +
Sbjct: 1435 YVNYRHLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGETDYL 1494
Query: 4318 KGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGF--YGSFAG-SPSNRE 4488
GVSEN+MLGQLA GT CFD+++D +K + + ++ + G F G F+ S + R
Sbjct: 1495 NGVSENVMLGQLAPYGTACFDVLIDPDKLR---DTATHLEIHGEFAKLGKFSTLSQTTRS 1551
Query: 4489 FSPA----HSPWNSGVTPTYAGAAWSPTTGGMSP--GAGFSPAGNTD-GGASPFNEGG-- 4641
+S + + S ++P + + MSP FSP T SP + GG
Sbjct: 1552 YSDSGAFESDSFESPMSPLSPMSPLYQSYEPMSPMISGQFSPVQMTPRSPMSPVSPGGIF 1611
Query: 4642 ----WSPASPGDPLGALSPRTPSYGGMSP 4716
+SP SP PL +P +P Y SP
Sbjct: 1612 SPVPYSPMSPSSPLMDYTPTSPIYAASSP 1640
Score = 46.2 bits (108), Expect = 0.009
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAA-WSPTTGGMSP-GAGFSPAGN---TDGGASPFNE 4635
SP++ ++SP SP + +P Y+ + +SPT+ +P +SP+ ++ SP
Sbjct: 1802 SPTSPQYSPT-SPNYNPASPNYSPTSHYSPTSPNYNPTSPNYSPSSPNYISNNSGSP--- 1857
Query: 4636 GGWSPASPG-DPLGALS-PRTPSY--GGMSPGVYSPSSP 4740
G+SP+SP DP+ S PR+PSY G M YSPSSP
Sbjct: 1858 -GYSPSSPQYDPIAVASVPRSPSYSVGKMVDAEYSPSSP 1895
Score = 42.7 bits (99), Expect = 0.099
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSPGAG-FSPAGNTDGGASPFNEGG 4641
SP++ +SP SP S +P Y+ + +SPT+ SP + +SP SP
Sbjct: 1760 SPTSPHYSPT-SPHYSPTSPHYSPTSPHYSPTSPHYSPSSPHYSPTSPQYSPTSP----N 1814
Query: 4642 WSPASPG-DPLGALSPRTPSYGGMSPGV----------------YSPSSPQF 4746
++PASP P SP +P+Y SP YSPSSPQ+
Sbjct: 1815 YNPASPNYSPTSHYSPTSPNYNPTSPNYSPSSPNYISNNSGSPGYSPSSPQY 1866
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II
[Encephalitozoon cuniculi]
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II
[Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 1214 bits (3140), Expect = 0.0
Identities = 688/1623 (42%), Positives = 977/1623 (59%), Gaps = 55/1623 (3%)
Frame = +1
Query: 43 VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 222
+ +QFG+ P+E++ SVA + PEV E G PK GGL+D R G DR C +C G+
Sbjct: 10 IKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGDNF 69
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
CPGHFGH+EL KP+FH+G+++K K+L CVCFYC ++ I + K
Sbjct: 70 SCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPRKG-------------IKS 116
Query: 403 RLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAE 582
L+ ++ + K +SVCEG GCG QP +R G+ + A
Sbjct: 117 TLSNVWGMSKGRSVCEGEVLDNGRS----------------GCGNKQPVIKREGLTLVAF 160
Query: 583 WKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXX 762
K E++ E K+ML ERV +F++I+DED + +G D +++RPEWMI T
Sbjct: 161 MK---GEESNEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMILTVLLVPPPAV 217
Query: 763 XXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDN 942
GS + +DDLTHKL+DIIK+N L++ E GA H++ D +LLQFHVAT +DN
Sbjct: 218 RPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATFIDN 277
Query: 943 CIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGV 1122
I GLP A QK GRPLKS+ RLKGKEGRIRGNLMGKRVDFSARTVIT DPN+ ++ VGV
Sbjct: 278 DIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGV 337
Query: 1123 PRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHPRAADLHL 1290
P IA+ TFPE VT FN+D+L++LV G ++PGA + +G ++DL ++ +D+ L
Sbjct: 338 PLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDLNFN--RSDIRL 395
Query: 1291 QPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDE 1470
+ GY VERHM+ GD+++FNRQP+LHKMSMM H +++ TFR+NLSVTSPYNADFDGDE
Sbjct: 396 EEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDE 455
Query: 1471 MNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFM 1650
MNLH+PQS ++AE+EE+A+V RQ+I+PQ+NKPVMGIVQDTL +R+ T RD F++ +
Sbjct: 456 MNLHMPQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREV 515
Query: 1651 MDLLMY-------LPTWD--------GK-------VPQPAILKPKPLWTGKQVFSLIIPG 1764
M LL +P D GK + +PAI KP LWTGKQV S ++P
Sbjct: 516 MSLLYAVNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLP- 574
Query: 1765 NVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTL 1944
N+N + S H D + + GDT+VII+ G + SG++ K G + G L+H++
Sbjct: 575 NLNYIGLSSEHDDDDKE------NIGDTRVIIQDGYIHSGVIDKKAAGATQGGLVHIIFN 628
Query: 1945 ELGYEIAANFYSHIQTVINAWLIR-EGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVI 2121
+ G + AA F+ +Q +INA++ ++GIGDTIAD T +++ IRKAK++V +I
Sbjct: 629 DFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEEVSALI 688
Query: 2122 EKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXX 2301
E A + LE PG T++++FE+ +N +LN ARD +G+SAQ+SLSE NN
Sbjct: 689 ENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGS 748
Query: 2302 XINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFF 2481
INISQV ACVGQQNVEGKRIPFGF HRTLPHF+KDDY +S+GFVENSYL GL P EFF
Sbjct: 749 FINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFF 808
Query: 2482 FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 2661
FHAMGGREGLIDTA+KTAETGYIQRRL+KA+E +V D +VR+ + Q++YGEDG D
Sbjct: 809 FHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYGEDGFD 868
Query: 2662 GMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNY---SEDVVREIQESEDGISLVES 2832
++E+Q + F + + +D+ + L + SE+V + D L++
Sbjct: 869 ATFLESQKVDVKN-----FTKRYYIDMFGTEELEIKHGQVSEEVYGMLSSDVDLQKLLDQ 923
Query: 2833 EWSQL--------------EEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRK 2970
E+ L E D K+ + ++ PCN R++ A++ F +
Sbjct: 924 EYEWLVGEIFEGPPILSVGEVDIERDYKVRDIYQSAVMSPCNFTRILATAKRTFHLSTG- 982
Query: 2971 PVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKL 3150
++SP +++ + L+ + ++N+L+R+ L K + + +L
Sbjct: 983 --DVSPYYILEAHKHLT------------------TSNRILNVLIRTNLSVKRVLLEHRL 1022
Query: 3151 NSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLG 3330
N+EAF+W++ I+++ +A P EMVG LAAQS+GEPATQMTLNTFH AGV A VT+G
Sbjct: 1023 NTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGV-ASTVTMG 1081
Query: 3331 VPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPD 3510
VPRLKEI NV+K LKTPS+ ++L K E AK + ++E T+K + + IYYDP+
Sbjct: 1082 VPRLKEIFNVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSEIYYDPE 1141
Query: 3511 PKNTVIAEDEEWVSIFYEMPDHDL--SRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGG 3684
T I++D+++V ++E PD D+ S SP+L+R+ +DR ++V + + +E +A I
Sbjct: 1142 ITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVVDRAKLVGRGINLEYVAMFIRKE 1201
Query: 3685 FGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQG 3864
G H I +D+NA +V R+R + ++ + N L L L G
Sbjct: 1202 LGGGAHVICSDENAVNMVVRVRTTKSE------------DESLNFYTTALNSLLRLQLGG 1249
Query: 3865 IPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSN 4044
+ KVY+ ++DK R +W L+TDG L ++L ++ T SN
Sbjct: 1250 YKNVKKVYI----SEDKDR------------KEWYLQTDGICLSQILGNPAVNSRLTISN 1293
Query: 4045 DICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 4224
D+ EI E LGIEA R++I RE+ VI +GSYVNYRH++LL DVMT +G+L ITRHG+N
Sbjct: 1294 DLVEIAETLGIEAARESILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVN 1353
Query: 4225 RQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKC 4404
+ GAL R SFEETV+IL++AA+ +E++ +G++ENIM+GQLA GTG +++LD++K
Sbjct: 1354 KVGAGALKRSSFEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKL 1413
Query: 4405 KYGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAW--------SPT 4560
+ + V +PS+ FS + W +PT+ A+ SPT
Sbjct: 1414 DKAIPLSNPVFKPNEPATPVISTPSSDSFSISSGNW----SPTHLEMAYSRDLGERLSPT 1469
Query: 4561 TGGMSP-GAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSS 4737
+ SP +SP + SP +SP SP + SP +PSY SP YSP+S
Sbjct: 1470 SPSYSPTSPSYSPTSPSYSPTSP----SYSPTSP-----SYSPTSPSYSPTSPS-YSPTS 1519
Query: 4738 PQF 4746
P +
Sbjct: 1520 PSY 1522
Score = 41.6 bits (96), Expect = 0.22
Identities = 32/92 (34%), Positives = 44/92 (47%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPS SP++SP + +PT ++SPT+ SP SP +SP
Sbjct: 1505 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSP-------------TSP----SYSP 1545
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SP + SP +PSY SP YSP+SP +
Sbjct: 1546 TSP-----SYSPTSPSYSPTSPS-YSPTSPSY 1571
>gi|12642618|gb|AAK00313.1| DNA-dependent RNA polymerase II largest
subunit RPB1 [Stylonychia mytilus]
Length = 1678
Score = 1211 bits (3133), Expect = 0.0
Identities = 685/1564 (43%), Positives = 960/1564 (60%), Gaps = 64/1564 (4%)
Frame = +1
Query: 247 LELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYDL 426
+ELA+PV+H G L K+LRC CFYC RLL DK+ LE +K+ ++S K L + L
Sbjct: 1 IELARPVYHAGLLEFIRKVLRCCCFYCSRLLADKNK---LEEIKRLKSSSAK-LARVLKL 56
Query: 427 CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVNED 606
C+ GCG QP +++ G+ I E+ +
Sbjct: 57 SDGVKECDPQQ---------------------NGCGHRQPKFQKTGLRIQVEYFDEQYDP 95
Query: 607 TQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXTFG 786
++RK +L A+ L V ++ITDED ++G +P+ +RPE MI
Sbjct: 96 GKDRKQILQADEALRVLERITDEDCELMGFNPRISRPENMIIKNLAVAPPPVRPSVSMSN 155
Query: 787 SAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTA 966
+ +++DDLT+ I++TN LQ GA + + LQ++VAT++DN I G PT
Sbjct: 156 TMRSEDDLTYCYQKILQTNITLQNQINRGANMTTINELRTNLQYYVATVMDNEIQGQPTQ 215
Query: 967 TQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNL 1146
K G+PLK+I+ RL+GKEGR+RGNLMGKRVDFSARTVIT DPNL +D +GVP+ IA NL
Sbjct: 216 KHKSGKPLKAIRARLRGKEGRLRGNLMGKRVDFSARTVITPDPNLQLDQLGVPQQIALNL 275
Query: 1147 TFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVER 1314
T PE VT N+D++++L+ RG +PGAK + ++DL ++ + PG++VER
Sbjct: 276 TVPETVTNENIDEMRKLIERGPNIWPGAKYIIRHDDRQIDLSQMRNRSEATIHPGFKVER 335
Query: 1315 HMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQS 1494
H++D D ++FNRQP+LHKMS+MGHRVK+LP+STFR+NLSVT+PYNADFDGDEMN+H+PQS
Sbjct: 336 HLRDNDYVIFNRQPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQS 395
Query: 1495 LETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLP 1674
ET AEI+EI VP Q+++PQ+NKPVMGIVQD+L V + T +D FI+ +M LLM+
Sbjct: 396 YETMAEIKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWAK 455
Query: 1675 TWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKV 1854
D K P P ILKP+PLWTGKQ+FSLIIP ++N+ + E G W S GD +
Sbjct: 456 YEDDKFPMPTILKPRPLWTGKQIFSLIIP-DINLQKV------GEKKGLI-WDSAGDLNI 507
Query: 1855 IIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIG 2034
+I GEL+ G + T+G S+G ++H++ E G +F S+ Q +IN WL + G T+G
Sbjct: 508 LIRKGELICGNLTKGTIGSSSGGMIHIIWKEKGPYCCRDFLSNTQLIINNWLHQNGFTVG 567
Query: 2035 IGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDA 2214
+ D IA + I++++ K K+DV + +KA L+ PG ++ ++FE VNQ LN A
Sbjct: 568 VQDIIAKKEIVQKIRDSMTKFKRDVTKIQQKAQLGKLKSQPGKSMMESFEASVNQCLNKA 627
Query: 2215 RDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLP 2394
RD G+ A LS +N +NISQ++ACVGQQNVEGKRIPFGF R+LP
Sbjct: 628 RDDCGNMALADLSSWNRLKAMVYAGSKGSNLNISQIMACVGQQNVEGKRIPFGFYKRSLP 687
Query: 2395 HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 2574
HF KDD+GPESKGFVEN YL GLTP EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA+
Sbjct: 688 HFSKDDFGPESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAL 747
Query: 2575 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK------PNNAVFERDFRM 2736
E VMV YDGTVR S Q++Q YGEDG+ G +E+ + +K N F +
Sbjct: 748 EDVMVKYDGTVRTSKEQIIQFLYGEDGMAGEHIEDLTINLLKMKNTDVQNKCKFLHKPKP 807
Query: 2737 DLTDN-------KFLRKNYSEDVVREIQESEDGISL-VESEWSQLEEDRRLLR-KIFPRG 2889
+++DN KF+ + Y+E ++R+ + I L +E+E+ Q+ +DR LR I
Sbjct: 808 NMSDNELEQHLSKFMDREYAERIIRDPE-----ICLQLENEYKQIIQDRDDLRFTILKSQ 862
Query: 2890 DAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSG----NDEI 3057
+ + L N+ R+IWNA++ F + + NL P +V+S ++ L L + G D +
Sbjct: 863 EDAVHLAVNVPRIIWNAKEQFSIRPNQKSNLEPTYVLSRLQNLMDDLAPIPGVMIHKDPL 922
Query: 3058 SKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGA 3237
+A ++T L I LRS L +K + + +L+ +AF+W+LGEI+SRF QA+ PGEMVG+
Sbjct: 923 ILEANSDSTWLFKIYLRSLLNSKAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGS 982
Query: 3238 LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAK 3417
+ AQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINV+K +KTPS+ +FL +
Sbjct: 983 IGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTPSMKIFLKDKDKQ 1042
Query: 3418 DPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP--DHDLSRT 3591
D A + ++EHTTL V ++AIYYDPDP+ T++ EDEE + ++ E+ + + RT
Sbjct: 1043 DERIATIIGGRIEHTTLCHVVKSSAIYYDPDPERTIVREDEELIRLYNEVRLFETERRRT 1102
Query: 3592 SPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKG 3771
SPW+LR ELD ++ K L+M++I +I+ F + + + +D+NAEKLV RLR+
Sbjct: 1103 SPWVLRFELDNDKVQFKDLSMQLIEQKINDIFRDQIDVVKSDENAEKLVLRLRV-----N 1157
Query: 3772 EAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFK 3951
+ ++++ D+ ++L+ + + +DL L+G+ ISKV + N + I G K
Sbjct: 1158 DIEDDEEDRTV-CMYLKGFQDELFNDLALKGLHEISKVTFTKYNDE----IFDVETGECK 1212
Query: 3952 SVAD-WILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
+ W++ETDG AL +VL I+ +T SNDI EI VLGIEAVR ++ E+ V+S
Sbjct: 1213 QDKECWLIETDGVALQKVLGLEGINYKKTVSNDIIEILRVLGIEAVRMSLINELRFVLSS 1272
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
G YVNYRHL+ LCDVMT +G L AITRHGINR + L +CSFEETV+IL+EAAV AE
Sbjct: 1273 YGIYVNYRHLSTLCDVMTQRGILTAITRHGINRVDSSPLRKCSFEETVEILLEAAVFAET 1332
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEI-PQNVVMGGGF----------- 4452
DP+KG++ENI++GQLA GTGCF++ +D + + +I P+ GGF
Sbjct: 1333 DPLKGITENIIMGQLAPFGTGCFEITIDPQVLQENAQIKPEEEDYIGGFTPIQDEMSNGN 1392
Query: 4453 ----YG---SFAGSPSNREFSPA--HSPWNSG------VTPTYAGAAWSPTTGGMSPGAG 4587
YG + + ++ A HS W G +P ++ + G MSPG
Sbjct: 1393 GLEMYGINTPLVMNTPHNDYGGASTHSMWTPGNQGSFSPSPGVYSPGYAQSPGYMSPGQQ 1452
Query: 4588 FSPAGNTDGGASPF-----------NEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPS 4734
F + N SP EGG + G+ + T MSP Y+
Sbjct: 1453 FMGSPNYRAVQSPIYNAIQSPIYHATEGGPGRSPTGNQASPIYSPTTQNNRMSPSYYNSV 1512
Query: 4735 SPQF 4746
SP +
Sbjct: 1513 SPGY 1516
>gi|50346858|gb|AAT75140.1| RNA polymerase 2 [Caenorhabditis remanei]
Length = 611
Score = 1186 bits (3069), Expect = 0.0
Identities = 596/611 (97%), Positives = 604/611 (98%), Gaps = 1/611 (0%)
Frame = +1
Query: 2395 HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 2574
HFIKDDYGPESKGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1 HFIKDDYGPESKGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60
Query: 2575 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNK 2754
ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE+QNMPTMKPNNAVFERDFRMDLTDNK
Sbjct: 61 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEDQNMPTMKPNNAVFERDFRMDLTDNK 120
Query: 2755 FLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIW 2934
FLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIW
Sbjct: 121 FLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIW 180
Query: 2935 NAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRST 3114
NAQKIFKVDLRKPVNLSPLHVI+GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRST
Sbjct: 181 NAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRST 240
Query: 3115 LCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 3294
LCTK MCT +KLN+EAFDWLLGE+ESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH
Sbjct: 241 LCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 300
Query: 3295 YAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKK 3474
YAGVSAKNVTLGVPRLKEIINVSK LKTPSLTVFLTGAAAKD EKAKDVLCKLEHTTLKK
Sbjct: 301 YAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKK 360
Query: 3475 VTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM 3654
VT NTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM
Sbjct: 361 VTLNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM 420
Query: 3655 EMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKG-EAQEEQVDKMEDDVFLRCIE 3831
EMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKG + QEEQVDKMEDDVFLRCIE
Sbjct: 421 EMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGADTQEEQVDKMEDDVFLRCIE 480
Query: 3832 ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSE 4011
ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFK+VADWILETDGTALLRVLSE
Sbjct: 481 ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSE 540
Query: 4012 RQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKG 4191
RQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKG
Sbjct: 541 RQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKG 600
Query: 4192 HLMAITRHGIN 4224
HLMAITRHGIN
Sbjct: 601 HLMAITRHGIN 611
>gi|7521936|pir||T31435 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - Vairimorpha necatrix
gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II; RPO21
[Vairimorpha necatrix]
Length = 1605
Score = 1179 bits (3049), Expect = 0.0
Identities = 683/1639 (41%), Positives = 958/1639 (57%), Gaps = 71/1639 (4%)
Frame = +1
Query: 43 VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 222
+S +QFG+ PEEI++ SV + PE ENG PK GGL+D + G +R C +C +
Sbjct: 10 ISSIQFGLFSPEEIRKSSVVQIIHPETMENGFPKSGGLIDLKMGTTERAFLCSSCEKDNF 69
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
CPGHFGH+EL KP+FH+G++TK KIL CVCFYC RL I N KK
Sbjct: 70 SCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTK-------------NLKK 116
Query: 403 RLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAE 582
L ++++ K KSVCEG GCG QP ++ G+ + A
Sbjct: 117 DLNFVWNISKTKSVCEGEIGENGFT----------------GCGNKQPVIKKEGMSLIAF 160
Query: 583 WKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXX 762
K E+ + K++L ERV + ++I +ED + +G D +F +PEW+I T
Sbjct: 161 MK---GEEESDGKVILNGERVHNILKKIVNEDAVFLGFDQKFTKPEWLILTVLLVPPPSV 217
Query: 763 XXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDN 942
G + +DDLTHKL+DI+K N L++ E GA HV+ D +LLQFH+AT++DN
Sbjct: 218 RPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVVRDYEQLLQFHIATMIDN 277
Query: 943 CIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGV 1122
I G P A QK GRPLKSI RLKGKEGR+RGNLMGKRVDFSAR+VIT DPN+ ++ VGV
Sbjct: 278 DISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDPNISVEEVGV 337
Query: 1123 PRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHPRAADLHL 1290
P IA+ TFPEI+TPFN+D+L +LV+ G +YPGA + +G R+DL ++ D+ L
Sbjct: 338 PSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYVIRNDGQRIDLNFN--RGDIKL 395
Query: 1291 QPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDE 1470
+ GY VERHM+DGD+++FNRQP+LHKMSMM H V+++ TFR+NLS SPYNADFDGDE
Sbjct: 396 EEGYVVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNADFDGDE 455
Query: 1471 MNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFM 1650
MNLH+PQS ++AE+EE+ +V +Q+++PQ+NKPVMGIVQD+L A+R+ T RD F D
Sbjct: 456 MNLHMPQSYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSFFDRRET 515
Query: 1651 MDLLM--------------YLPTWDGKVPQ----------------PAILKPKPLWTGKQ 1740
M LL + T D PAI PK LWTGKQ
Sbjct: 516 MQLLYSVNINNYEFTDSSKLIMTHDDSFGNNLHTEESSNIMKILNFPAISYPKKLWTGKQ 575
Query: 1741 VFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAG 1920
+ S I+P + S + ED + D+ VII +GE+LSGI+ K VG + G
Sbjct: 576 ILSYILPNTI--YNGKSNEHNEEDLENVE-----DSYVIIRNGEILSGIIDKKAVGSTQG 628
Query: 1921 NLLHVVTLELGYEIAANFYSHIQTVINAWLIR-EGHTIGIGDTIADQATYLDIQNTIRKA 2097
L+H++ + G + F+ Q ++N + +IGIGD IAD+ T +Q +I A
Sbjct: 629 GLIHIIANDFGPDRVTCFFDDAQKMMNLYFATINAFSIGIGDAIADKETMSQVQRSIETA 688
Query: 2098 KQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXX 2277
K+ V ++I KA + LE PG ++R++FE++VN ILN RD +G+SA KSLS NN
Sbjct: 689 KEQVNEIIVKAQKNKLERLPGMSMRESFESQVNYILNKPRDISGASASKSLSFCNNMRTM 748
Query: 2278 XXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLA 2457
INISQV AC+GQQNVEGKRIPFGF +R+LPHF K DY +S+GFVENSY+
Sbjct: 749 VLAGSKGSFINISQVTACLGQQNVEGKRIPFGFNYRSLPHFSKADYSGKSRGFVENSYVK 808
Query: 2458 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQL 2637
G+TP EFFFHAMGGREGLID A+KTAETGYIQRRL+KAME V D +VR + + Q
Sbjct: 809 GITPEEFFFHAMGGREGLIDIAIKTAETGYIQRRLVKAMEDATVTLDRSVRGADGFIYQY 868
Query: 2638 RYGEDGLDGMWVENQNM---PTMKPNNAVFERDFRMDL-TDNKFL--RKNYSEDVVREIQ 2799
YGEDG D ++E Q M ++ F+ +D+ TD F ++N ++ + + +
Sbjct: 869 EYGEDGFDATFLEMQKMTHDDVATKDDVSFKNLHLVDMFTDLNFAIKKENVTDQIYKLLT 928
Query: 2800 ESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVN 2979
+ ++ E+ L E+ + K+ I PCN QR+I A I+K D RK +
Sbjct: 929 TDVNLQKILYDEFEWLNENVKKYEKM------NIASPCNFQRIINLA--IYKFDCRKG-D 979
Query: 2980 LSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSE 3159
+SP ++ ++ L + L I LL+ IL++ L K + + KL+ E
Sbjct: 980 ISPYLILDTLKNLIENLPI--------------KNLLIEILIKYNLSIKRILNEYKLSLE 1025
Query: 3160 AFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR 3339
A++W+L EI+ + ++I P EMVG LAAQS+GEPATQMTLNTFH AGVSA N+T+GVPR
Sbjct: 1026 AYNWILKEIKFKILKSIISPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSA-NITMGVPR 1084
Query: 3340 LKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKN 3519
LKEIINV+K +KTP + ++L K E AK + +LE + +K + + IYYDP ++
Sbjct: 1085 LKEIINVAKNIKTPCMKIYLKDPFNKTLEMAKKIQSELEFSDIKSLCEFSEIYYDPVIED 1144
Query: 3520 TVIAEDEEWVSIFYEMPDH--DLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN 3693
T I ED+++V +++ PD D S+ +++R+++DR ++V K L +E I +H F N
Sbjct: 1145 TSIKEDKDFVQEYFDFPDEHLDFSKMPKFIIRLKIDRIKLVSKNLKLENIVKSLHEAFPN 1204
Query: 3694 DVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPA 3873
H I +D+N++ L+ R+R + + ++V ++ + +L + G
Sbjct: 1205 IFHIIRSDENSQNLIIRIRC------------ISSLNNNVEYYNLQYKNILNLKIMGYNK 1252
Query: 3874 ISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDIC 4053
I KV++++ D +W L+TDG + + S ++ TSND+
Sbjct: 1253 IKKVFISEDKDKD----------------EWYLQTDGVCIREIFSHPNVEGHLVTSNDLN 1296
Query: 4054 EIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQE 4233
EI EVLGIEA R+ I E+ VI +GSYVN+RH++LL DVMT KG+L ITRHG+N+
Sbjct: 1297 EIVEVLGIEAARETILNELTLVIDGNGSYVNHRHISLLADVMTMKGYLTGITRHGVNKVG 1356
Query: 4234 VGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKC--- 4404
G R SFEETVDIL++AA+ AE+ KG +ENIM+G LA GTG +L+LDV K
Sbjct: 1357 FGCTKRASFEETVDILLDAALVAEKYVTKGYTENIMMGHLAPLGTGIGNLLLDVSKLDKA 1416
Query: 4405 ------KYGME----------IPQNVVMGGGFYG------SFAGSPSNREFSPAHSPWNS 4518
+Y E + +N+ + G + +P +SP SP S
Sbjct: 1417 IPLSKPEYNYEEVDTPFIHSPVSENLSISSGNWSPAYLVEGNRYAPKTSLYSPT-SPTYS 1475
Query: 4519 GVTPTYA--GAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPR 4689
+PTY+ +SPT+ SP +SP T SP +SP SP + SP
Sbjct: 1476 PTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSP----SYSPTSP-----SYSPT 1526
Query: 4690 TPSYGGMSPGVYSPSSPQF 4746
+PSY SP YSP+SP +
Sbjct: 1527 SPSYSPTSPS-YSPTSPSY 1544
Score = 36.2 bits (82), Expect = 9.3
Identities = 30/88 (34%), Positives = 41/88 (46%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPS SP++SP + +PT ++SPT+ SP SP +SP
Sbjct: 1527 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSP-------------TSP----SYSP 1567
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPS 4734
SP + SP +PSY SP YSP+
Sbjct: 1568 TSP-----SYSPTSPSYSPTSPS-YSPT 1589
>gi|50346879|gb|AAT75146.1| RNA polymerase 2 [Caenorhabditis japonica]
Length = 608
Score = 1176 bits (3041), Expect = 0.0
Identities = 589/608 (96%), Positives = 600/608 (97%), Gaps = 1/608 (0%)
Frame = +1
Query: 2395 HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 2574
HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1 HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60
Query: 2575 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNK 2754
ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDN+
Sbjct: 61 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNR 120
Query: 2755 FLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIW 2934
FLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIW
Sbjct: 121 FLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIW 180
Query: 2935 NAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRST 3114
NAQKIFKVDLRKPVNLSPLHVI+GVRELSKKLIIV GNDEISKQAQYNATLLMNILLRST
Sbjct: 181 NAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVCGNDEISKQAQYNATLLMNILLRST 240
Query: 3115 LCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 3294
LCTK MCT +KLN+EAFDWLLGEIE+RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH
Sbjct: 241 LCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 300
Query: 3295 YAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKK 3474
YAGVSAKNVTLGVPRLKEIINVSK LKTPSLTV+LTGAAA+D EKAKDVLCKLEHTTLKK
Sbjct: 301 YAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAAARDAEKAKDVLCKLEHTTLKK 360
Query: 3475 VTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM 3654
VTCNTAIYYDPDPKNTVI EDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM
Sbjct: 361 VTCNTAIYYDPDPKNTVITEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM 420
Query: 3655 EMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKG-EAQEEQVDKMEDDVFLRCIE 3831
EMIADRIHGGFG+DVHTIYTDDNAEKLVFRLRIAGEDKG + QEEQVDKMEDDVFLRCIE
Sbjct: 421 EMIADRIHGGFGSDVHTIYTDDNAEKLVFRLRIAGEDKGADTQEEQVDKMEDDVFLRCIE 480
Query: 3832 ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSE 4011
ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFK+VADWILETDGTALLRVLSE
Sbjct: 481 ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSE 540
Query: 4012 RQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKG 4191
RQIDPVRT+SNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKG
Sbjct: 541 RQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKG 600
Query: 4192 HLMAITRH 4215
HLMAITRH
Sbjct: 601 HLMAITRH 608
>gi|31127034|gb|AAF26651.2| RNA polymerase II largest subunit
[Polyxenus fasciculatus]
Length = 751
Score = 1176 bits (3041), Expect = 0.0
Identities = 562/751 (74%), Positives = 659/751 (86%), Gaps = 4/751 (0%)
Frame = +1
Query: 1030 IRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRG 1209
IRGNLMGKRVDFSARTVIT DPNL ID VGVPR+IAQNLTFPEIVTPFN+DK+QELV RG
Sbjct: 1 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRG 60
Query: 1210 DTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSM 1377
++QYPGAK +NG R+DLR+HP+ +DLHLQ GYRVERH++DGD+++FNRQPTLHKMSM
Sbjct: 61 NSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYRVERHVRDGDVVIFNRQPTLHKMSM 120
Query: 1378 MGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQ 1557
MGH +++ PWSTFRMNLSVT+PYNADFDGDEMNLH+PQS+ETRAEIEE+A+VPRQ+ITPQ
Sbjct: 121 MGHHIRVFPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIITPQ 180
Query: 1558 ANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGK 1737
+N+PVMGIVQDTL AVR MTKRDVF+D MM++LM+LP WDGK+PQPAILKPKP+WTGK
Sbjct: 181 SNRPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNILMFLPIWDGKMPQPAILKPKPVWTGK 240
Query: 1738 QVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSA 1917
QVFSLIIPGNVN++RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C K++G SA
Sbjct: 241 QVFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVLVEHGELMCGILCKKSLGTSA 300
Query: 1918 GNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKA 2097
G+LLH+V LELG+E A FYSHIQTV+N WL+ EGHTIGIGDTIADQ TY +IQ TIRKA
Sbjct: 301 GSLLHIVMLELGWETAGLFYSHIQTVVNNWLLLEGHTIGIGDTIADQQTYHEIQETIRKA 360
Query: 2098 KQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXX 2277
KQDV++VIEKAHND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SAQ+SLSEFNNF
Sbjct: 361 KQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQRSLSEFNNFKAM 420
Query: 2278 XXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLA 2457
INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLA
Sbjct: 421 VVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 480
Query: 2458 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQL 2637
GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV YDGTVRNS+ Q++QL
Sbjct: 481 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSVGQLIQL 540
Query: 2638 RYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGI 2817
RYGEDGLDG VE Q +PT+KP+N FE+ FR D ++ + LR+ ++E++V+++ S +
Sbjct: 541 RYGEDGLDGGAVEFQALPTLKPSNKAFEKKFRFDASNERQLRRVFNEEIVKDLFGSASAV 600
Query: 2818 SLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 2997
+E EW L+ DR +LR IFP+GD+K+VLPCNLQR+IWNAQKIF +++R P +LSPL V
Sbjct: 601 GELEREWXTLKLDREVLRTIFPKGDSKVVLPCNLQRMIWNAQKIFHINVRTPTDLSPLRV 660
Query: 2998 ISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLL 3177
I GVR+L+KKL+IV G D +SKQA NATLL+N L+RSTLCTK + + +L++EAF+WLL
Sbjct: 661 IEGVRDLTKKLVIVVGEDALSKQANDNATLLINCLIRSTLCTKRVAEEFRLSAEAFEWLL 720
Query: 3178 GEIESRFQQAIAQPGEMVGALAAQSLGEPAT 3270
GEIE+RFQ A QPGEMVGALAAQSLGEPAT
Sbjct: 721 GEIETRFQHAQVQPGEMVGALAAQSLGEPAT 751
>gi|1916670|gb|AAB51213.1| large subunit RNA polymerase II
[unidentified nematode]
Length = 633
Score = 1169 bits (3024), Expect = 0.0
Identities = 584/633 (92%), Positives = 602/633 (94%), Gaps = 1/633 (0%)
Frame = +1
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA
Sbjct: 1 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 60
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQ+MPTMKPNNAV
Sbjct: 61 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAV 120
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDA 2895
FERDFR DLTD++FL +Y+EDV+RE+QES + I +ESEW+QL EDRRLLRKIFP+GDA
Sbjct: 121 FERDFRTDLTDHRFLENSYTEDVIRELQESSEAIEKIESEWAQLSEDRRLLRKIFPKGDA 180
Query: 2896 KIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQY 3075
KIVLPCNLQRL+WNAQKIFKVD RKPVNLSPLHVI GVRELSKKLIIV GND+ISKQAQY
Sbjct: 181 KIVLPCNLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDDISKQAQY 240
Query: 3076 NATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSL 3255
NATLLMNILLRS LCTK MCT SKLN+EAFDWLLGEIESRF QAIAQPGEMVGALAAQSL
Sbjct: 241 NATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMVGALAAQSL 300
Query: 3256 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAK 3435
GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK LKTPSLTVFLTGAAAKD EKAK
Sbjct: 301 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAAAKDAEKAK 360
Query: 3436 DVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIE 3615
DVLCKLEHTTLKKVT NTAIYYDPDPKNTVI EDEEWVSIFYEMPD D +RTSPWLLRIE
Sbjct: 361 DVLCKLEHTTLKKVTANTAIYYDPDPKNTVIGEDEEWVSIFYEMPDFDTTRTSPWLLRIE 420
Query: 3616 LDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK-GEAQEEQV 3792
LDRKRM DK LTMEMIADRIH GFG DVHTIYTDDNAEKLVFRLRIAGEDK E QEEQV
Sbjct: 421 LDRKRMTDKNLTMEMIADRIHSGFGQDVHTIYTDDNAEKLVFRLRIAGEDKAAEGQEEQV 480
Query: 3793 DKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWIL 3972
DKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT EGGFKS+ +WIL
Sbjct: 481 DKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITEEGGFKSITEWIL 540
Query: 3973 ETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYR 4152
ETDGTALLRVLSERQIDPVRT+SNDICEIFEVLGIEAVRKAIEREM NVISFDGSYVNYR
Sbjct: 541 ETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYR 600
Query: 4153 HLALLCDVMTAKGHLMAITRHGINRQEVGALMR 4251
HLALLCDVMTAKGHLMAITRHGINRQEVGALMR
Sbjct: 601 HLALLCDVMTAKGHLMAITRHGINRQEVGALMR 633
>gi|50346885|gb|AAT75149.1| RNA polymerase 2 [Caenorhabditis
drosophilae]
Length = 633
Score = 1166 bits (3017), Expect = 0.0
Identities = 576/633 (90%), Positives = 604/633 (94%)
Frame = +1
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
Sbjct: 1 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 60
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPN 2706
KTAETGYIQRRLIKAMESVMVNYDGTVRNSL QMVQLRYGEDGLDGMWVENQ+MPTMKPN
Sbjct: 61 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQMVQLRYGEDGLDGMWVENQSMPTMKPN 120
Query: 2707 NAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPR 2886
+AVFERDFR DLTD F++K YSEDV+R++ ESED I VESEW+QLEEDRRLLRKIFP+
Sbjct: 121 DAVFERDFRTDLTDEVFMKKYYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLRKIFPK 180
Query: 2887 GDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQ 3066
GDAKIVLPCNLQRL+WNAQKIFKVD+RKPVNLSPLHVI GVRELSKKL+IV G+D+ISKQ
Sbjct: 181 GDAKIVLPCNLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDDISKQ 240
Query: 3067 AQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAA 3246
AQYNATLLMNILLRSTLCTK +CT SKLN+EAFDWLLGE+ESRF QAIAQPGEMVGALAA
Sbjct: 241 AQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMVGALAA 300
Query: 3247 QSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPE 3426
QSLGEPA QMTLNTFHYAGVSAKNVTLGVPRLKEIINV+K LKTPSLTVFL GAAA+D E
Sbjct: 301 QSLGEPAPQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKQLKTPSLTVFLIGAAARDAE 360
Query: 3427 KAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLL 3606
KAKDVLCKLEHTTLKKVT NTAIYYDPDPKNTVI EDEEWVSIFYEMPD D +RTSPWLL
Sbjct: 361 KAKDVLCKLEHTTLKKVTANTAIYYDPDPKNTVINEDEEWVSIFYEMPDFDTTRTSPWLL 420
Query: 3607 RIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEE 3786
RIELDRKRM DKKLTMEMIADRIH GFGNDVHTIYTDDNAEKLVFRLRIAG+DKGE QEE
Sbjct: 421 RIELDRKRMTDKKLTMEMIADRIHSGFGNDVHTIYTDDNAEKLVFRLRIAGDDKGEGQEE 480
Query: 3787 QVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADW 3966
QVDKMEDDVFLRCIEANML+DLTLQGIP+ISKVYMNQPNTDDKKR +IT EGGFKS+ +W
Sbjct: 481 QVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKKRTVITDEGGFKSITEW 540
Query: 3967 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 4146
ILETDGTALLRVL+E+QIDPVRTTSNDICEIFEVLGIEAVRKAIEREM NVISFDGSYVN
Sbjct: 541 ILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 600
Query: 4147 YRHLALLCDVMTAKGHLMAITRHGINRQEVGAL 4245
YRHLALLCDVMTAKGHLMAITRHGINRQEVGAL
Sbjct: 601 YRHLALLCDVMTAKGHLMAITRHGINRQEVGAL 633
>gi|31127046|gb|AAC03136.3| RNA polymerase II largest subunit [Limulus
polyphemus]
Length = 778
Score = 1150 bits (2976), Expect = 0.0
Identities = 555/777 (71%), Positives = 652/777 (83%)
Frame = +1
Query: 1381 GHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQA 1560
GHR+K+LPWSTFR+NLSVT+PYNADFDGDEMNLH+PQSLETRAEIE++AMV R +ITPQ+
Sbjct: 1 GHRIKVLPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETRAEIEQLAMVSRNIITPQS 60
Query: 1561 NKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQ 1740
NKPVMGIVQDTL AVR MT+RDVF++ MM+LLMYLP WDGK+P PAILKPKPLWTGKQ
Sbjct: 61 NKPVMGIVQDTLTAVRKMTRRDVFLEKDQMMNLLMYLPIWDGKMPMPAILKPKPLWTGKQ 120
Query: 1741 VFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAG 1920
+FSLIIP N+N++RTHSTHPD ED GPYKWISPGDTKV+IEHGEL+SGIVC KTVG S+G
Sbjct: 121 LFSLIIPPNINLIRTHSTHPDEEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGASSG 180
Query: 1921 NLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAK 2100
+L+HVV ELG+E++ FY HIQTV+N WL+ EGHTIGIGDTIAD TY++IQNTI+KAK
Sbjct: 181 SLMHVVFNELGHEVSGQFYGHIQTVVNNWLLLEGHTIGIGDTIADPQTYIEIQNTIKKAK 240
Query: 2101 QDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXX 2280
QDV++VIEKAHND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG+SAQKSLSEFNNF
Sbjct: 241 QDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMV 300
Query: 2281 XXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 2460
INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAG
Sbjct: 301 VSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 360
Query: 2461 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLR 2640
LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM YDGTVRNS Q++QL+
Sbjct: 361 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTVRNSTGQVIQLK 420
Query: 2641 YGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGIS 2820
YGEDGLDG VE Q++PT+KP++ FE+ FR + ++ ++LR+ ++EDVVR++ S +S
Sbjct: 421 YGEDGLDGTAVEVQSLPTLKPSDKAFEKKFRFNASNERYLRRIFTEDVVRDLMGSATALS 480
Query: 2821 LVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVI 3000
+E EW +L+ DR LLR IFP GD+K+VLPCNLQR+IW+AQKIF V+ R P +LSPL VI
Sbjct: 481 ELEKEWEKLKHDRELLRAIFPTGDSKVVLPCNLQRMIWSAQKIFHVNQRAPTDLSPLKVI 540
Query: 3001 SGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLG 3180
GV EL KKL++V G D +S QA NAT+L LLRSTLC K + + +L+SE+F WLLG
Sbjct: 541 GGVEELVKKLVVVPGEDRLSIQANDNATILFRALLRSTLCAKRVAEEFRLSSESFQWLLG 600
Query: 3181 EIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV 3360
EIE+RFQQA QP AGVSAKNVTLGVPRLKEIIN+
Sbjct: 601 EIEARFQQAQVQPXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAKNVTLGVPRLKEIINI 660
Query: 3361 SKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDE 3540
SK KTPSLTVFLTG+AA+D EKAKDVLC+LEHTTL+KVT NTAIYYDPDP+NTVI ED+
Sbjct: 661 SKKPKTPSLTVFLTGSAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIVEDQ 720
Query: 3541 EWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIY 3711
E+V+++YEMPD D +R SPWLLRIELDRKRM DKKLTME IA++I+ GFG+D++ I+
Sbjct: 721 EFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIF 777
>gi|50346881|gb|AAT75147.1| RNA polymerase 2 [Caenorhabditis plicata]
Length = 636
Score = 1147 bits (2966), Expect = 0.0
Identities = 569/636 (89%), Positives = 601/636 (94%), Gaps = 1/636 (0%)
Frame = +1
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
Sbjct: 1 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 60
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKP 2703
VKTAETGYIQRRLIKAMESVMVNYDGTVRNSL QMVQLRYG+DGLDGMWVENQNMPTMKP
Sbjct: 61 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQMVQLRYGQDGLDGMWVENQNMPTMKP 120
Query: 2704 NNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFP 2883
NAVFERDFR DLTD+ F+R +Y++ V+REIQESED I VESEW+QLEEDRRLLRKIFP
Sbjct: 121 TNAVFERDFRTDLTDDNFMRNSYTDSVIREIQESEDAIEKVESEWAQLEEDRRLLRKIFP 180
Query: 2884 RGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISK 3063
+GDAKIVLPCNLQRLIWNAQKIFKVD RKPV+LSPLHVI GVRE+S KLIIVSGND+IS+
Sbjct: 181 KGDAKIVLPCNLQRLIWNAQKIFKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDDISR 240
Query: 3064 QAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALA 3243
QAQYNATLLMNILLRSTLC+K +CT SKLN+EAFDWLLGE+ESRF QAIAQPGEMVGALA
Sbjct: 241 QAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQPGEMVGALA 300
Query: 3244 AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDP 3423
AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK LKTPSLT FL G+AAKD
Sbjct: 301 AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLVGSAAKDV 360
Query: 3424 EKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWL 3603
EKAKDVLCKLEHTTLKKVT NTAIYYDPDPKNTVI EDEEWVSIFYEMPD DL++ SPWL
Sbjct: 361 EKAKDVLCKLEHTTLKKVTSNTAIYYDPDPKNTVIGEDEEWVSIFYEMPDADLTKASPWL 420
Query: 3604 LRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK-GEAQ 3780
LRIELDRK+M DKKLTMEMI +RIH GFGNDV TIYTDDNA+KLVFRLRIAG+DK E Q
Sbjct: 421 LRIELDRKKMTDKKLTMEMIDERIHAGFGNDVKTIYTDDNADKLVFRLRIAGDDKMAEGQ 480
Query: 3781 EEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVA 3960
EEQVDKMEDDVFLRCIE+NML+DLTLQGIPAI+KVY+N+P +DDKKR IITPEGGFKS+A
Sbjct: 481 EEQVDKMEDDVFLRCIESNMLADLTLQGIPAIAKVYLNKPQSDDKKRTIITPEGGFKSIA 540
Query: 3961 DWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSY 4140
+WILETDGTAL RVLSE QIDPVRTTSNDICEIFEVLGIEAVRKAIEREM NVISFDGSY
Sbjct: 541 EWILETDGTALQRVLSEPQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSY 600
Query: 4141 VNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 4248
VNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM
Sbjct: 601 VNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 636
>gi|50346868|gb|AAT75142.1| RNA polymerase 2 [Caenorhabditis sp.
CB5161]
Length = 596
Score = 1145 bits (2963), Expect = 0.0
Identities = 577/594 (97%), Positives = 585/594 (98%), Gaps = 1/594 (0%)
Frame = +1
Query: 2419 PESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYD 2598
PESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYD
Sbjct: 1 PESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYD 60
Query: 2599 GTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSE 2778
GTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRM+LTD KFLRK+YSE
Sbjct: 61 GTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMELTDTKFLRKHYSE 120
Query: 2779 DVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKV 2958
DVVREIQES DGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKV
Sbjct: 121 DVVREIQESLDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKV 180
Query: 2959 DLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCT 3138
DLRKPVNLSPLHVI+GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTK MCT
Sbjct: 181 DLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCT 240
Query: 3139 KSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKN 3318
+KLN+EAFDWLLGEIE+RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKN
Sbjct: 241 SAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKN 300
Query: 3319 VTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIY 3498
VTLGVPRLKEIINVSK LKTPSLTVFLTG AAKDPEKAKDVLCKLEHTTLKKVTCNTAIY
Sbjct: 301 VTLGVPRLKEIINVSKQLKTPSLTVFLTGPAAKDPEKAKDVLCKLEHTTLKKVTCNTAIY 360
Query: 3499 YDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIH 3678
YDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIH
Sbjct: 361 YDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIH 420
Query: 3679 GGFGNDVHTIYTDDNAEKLVFRLRIAGEDKG-EAQEEQVDKMEDDVFLRCIEANMLSDLT 3855
GGFGNDVHTIYTDDNAEKLVFRLRIAGEDKG E QEEQVDKMEDDVFLRCIEANMLSDLT
Sbjct: 421 GGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLT 480
Query: 3856 LQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRT 4035
LQGIPAISKVYMNQP TDDKKRIIITPEGGFK+VADWILETDGTALLRVLSE+QIDPVRT
Sbjct: 481 LQGIPAISKVYMNQPQTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSEQQIDPVRT 540
Query: 4036 TSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 4197
TSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL
Sbjct: 541 TSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 594
>gi|31127036|gb|AAF26656.2| RNA polymerase II largest subunit
[Scolopendra polymorpha]
Length = 734
Score = 1132 bits (2929), Expect = 0.0
Identities = 537/734 (73%), Positives = 636/734 (86%), Gaps = 4/734 (0%)
Frame = +1
Query: 1030 IRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRG 1209
IRGNLMGKRVDFSARTVIT DPNL ID VGVPR+IAQNLTFPEIVTPFN+DK+QELV RG
Sbjct: 1 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVQRG 60
Query: 1210 DTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSM 1377
+ QYPGAK +NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPTLHKMSM
Sbjct: 61 NNQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHKMSM 120
Query: 1378 MGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQ 1557
MGH +++LPWSTFRMNLSVT+PYNADFDGDEMNLH+PQS+ETRAEIEE+A+VPRQ+ITPQ
Sbjct: 121 MGHHIRVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIITPQ 180
Query: 1558 ANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGK 1737
+N+PVMGIVQDTL AVR MTKRDVF++ MM+LLM+LP WDGK+P PAILKPKPLWTGK
Sbjct: 181 SNRPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAILKPKPLWTGK 240
Query: 1738 QVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSA 1917
Q+FSLIIPG VNV+RTH THPD ED PYKWISPGDTKV++EHG+L+SGI+C KT+G SA
Sbjct: 241 QLFSLIIPGAVNVIRTHYTHPDDEDDSPYKWISPGDTKVLVEHGKLISGILCKKTLGTSA 300
Query: 1918 GNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKA 2097
G+LLH+V LELG+EIA FY HIQ VIN WL+ EGHTIGIGDTIAD TY+DIQN+I+KA
Sbjct: 301 GSLLHIVMLELGWEIAGTFYWHIQMVINNWLLLEGHTIGIGDTIADPQTYIDIQNSIKKA 360
Query: 2098 KQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXX 2277
K DV+DVIEKAHND+LEPTPGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF
Sbjct: 361 KHDVIDVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKAM 420
Query: 2278 XXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLA 2457
INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLA
Sbjct: 421 VVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 480
Query: 2458 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQL 2637
GLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMES+M+ YDGTVRNS+ Q++QL
Sbjct: 481 GLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESIMITYDGTVRNSVGQLIQL 540
Query: 2638 RYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGI 2817
RYGEDGLDG VE Q +PT+KP+N FE+ F+ D+++ + L+K ++ED+V+E+ S + +
Sbjct: 541 RYGEDGLDGGAVEFQTLPTLKPSNKAFEKKFKFDISNERQLKKIFNEDIVKELMGSANIV 600
Query: 2818 SLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 2997
+E EW L+ DR LR++FP+GD+K+VLPCNL R+IWNAQKIF ++ R P +L+P V
Sbjct: 601 GELEKEWETLKRDRETLRQVFPKGDSKVVLPCNLPRMIWNAQKIFHINTRVPTDLNPFRV 660
Query: 2998 ISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLL 3177
I GVREL KK++IV G D +S+ A NATLL + LLRSTLCTK + + +L+SEAF+WLL
Sbjct: 661 IEGVRELVKKIVIVQGEDPLSRMANENATLLFDCLLRSTLCTKRVAEEFRLSSEAFEWLL 720
Query: 3178 GEIESRFQQAIAQP 3219
GEIE+RFQQA QP
Sbjct: 721 GEIETRFQQAQVQP 734
>gi|7521935|pir||T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - Nosema locustae
gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Nosema
locustae]
Length = 1553
Score = 1125 bits (2909), Expect = 0.0
Identities = 668/1641 (40%), Positives = 935/1641 (56%), Gaps = 73/1641 (4%)
Frame = +1
Query: 43 VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 222
V +QFG+ PEEI+ SVA + +PE ENG PK GL+D R G +R C TC +
Sbjct: 11 VKAIQFGLFSPEEIRASSVALIRYPETLENGVPKESGLIDLRMGTTERDYLCATCNQDNY 70
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
C GHFGH+EL KP+FH+GF+++ K+L CVCFYC ++ I+K+ + + SK
Sbjct: 71 VCAGHFGHIELVKPMFHVGFISRIKKVLECVCFYCSKVRINKNKTTITK-------ESKH 123
Query: 403 RLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAE 582
+L I+ +CK K VCE C QP ++ G+ + A
Sbjct: 124 KLNFIWGICKNKMVCED-------------------------CNNRQPVIKKEGLSLFAY 158
Query: 583 WKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXX 762
K E+ E K+ML ERV +F++I +ED+ +G + +++RPE+MI +
Sbjct: 159 MK---GEENNEGKVMLNGERVYNIFKKINNEDLEFLGFNIKYSRPEYMILSVLLVAPPAV 215
Query: 763 XXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDN 942
G+ + +DDLT+K SDIIK+NQ L++ E GA AH++ D +L+QFHVATL+DN
Sbjct: 216 RPSIVMEGTLRGEDDLTYKYSDIIKSNQNLKKYEEEGAPAHIIRDYEQLVQFHVATLIDN 275
Query: 943 CIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGV 1122
I G P A QK GRPLK+I RLKGKEGR+RGNLMGKRVDFSAR+VITADPN+ ++ +GV
Sbjct: 276 EISGQPQALQKNGRPLKAISARLKGKEGRLRGNLMGKRVDFSARSVITADPNISLEELGV 335
Query: 1123 PRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHPRAADLHL 1290
P +A TFPE VT FN++KL++LV+ G +YPGA + +G R+DL + D+ L
Sbjct: 336 PMKVAMIHTFPERVTSFNLNKLRKLVSNGPNKYPGANYLIRRDGQRIDLNFS--RGDVIL 393
Query: 1291 QPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDE 1470
+ GY VERHM +GD+++FNRQP+LHKMSMM H+VK++ TFR+NLS T+PYNADFDGDE
Sbjct: 394 EEGYVVERHMLNGDLVLFNRQPSLHKMSMMAHKVKVMDGLTFRLNLSATAPYNADFDGDE 453
Query: 1471 MNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFM 1650
MNLH+PQS ++AE+ E+ +V + +I+PQ+NKPVMGI+QDTL V +T + VFI
Sbjct: 454 MNLHMPQSYNSKAELSELMLVSKHIISPQSNKPVMGIIQDTLLGVCRLTSKGVFIKREEF 513
Query: 1651 MDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKW 1830
+L+ +PAI +PK L+TGKQ+FSL +P +N R
Sbjct: 514 CNLVYASNLVARANIKPAIARPKILYTGKQLFSLTLP-KLNFFRD--------------- 557
Query: 1831 ISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWL 2010
KV+I G LL+G++C K+VG + G+L+H++ + G+E F +Q +I+ +L
Sbjct: 558 ------KVVIMDGVLLNGVICKKSVGTAQGSLIHIIANDYGHEEITRFIDSLQKLISTYL 611
Query: 2011 -IREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVI-EKAHNDDLEPTPGNTLRQTFE 2184
+ ++GIGDTI+ T I I AK +V +I + LE PG L++T E
Sbjct: 612 TLISTFSVGIGDTISSPETMAHISRAIGDAKAEVKQLIYDSRRRGSLEKLPGMNLQETLE 671
Query: 2185 NKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRI 2364
+K+N LN ARD +G+ A +SL+ N INISQ+ +CVGQQN+E KRI
Sbjct: 672 SKINLALNKARDISGTRAVESLNHLNGLKQMLKAGSKGSYINISQITSCVGQQNIESKRI 731
Query: 2365 PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETG 2544
PFGFR RTLPHF+K+DYGPES+GFV NSYL+GL P EFFFHAMGGREGLIDTA KTAETG
Sbjct: 732 PFGFRQRTLPHFVKNDYGPESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDTACKTAETG 791
Query: 2545 YIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFER 2724
YIQRR++KAME + YDG+VR S + + Q YGED D ++E Q P +
Sbjct: 792 YIQRRIVKAMEDARIEYDGSVRGS-STVYQFMYGEDNFDSTYLETQAFPVESRCS----- 845
Query: 2725 DFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIV 2904
+ ++ + K ++ ++ I E ED I +++ G
Sbjct: 846 EIKLSVCSFKLHGMLENDSALQAIMEKEDRIFEMDA---------------CKYGGRDYT 890
Query: 2905 LPCNLQRLIWNAQKIFK-----VDLRKPVNL--SPLHVISGVRELSKKLIIVSGNDEISK 3063
LP N+ RL+ AQ+ +K VD V L S L +S + KK+ + + + +
Sbjct: 891 LPFNIARLVATAQRDYKVKVSDVDPYAVVRLKESLLDFVSQYYCMQKKMYMHEKSPKTTL 950
Query: 3064 QAQYNATLLMNI----------------------LLRSTLCTKNMCTKSKLNSEAFDWLL 3177
Q+ T + +I +RS L K + ++++ +W+
Sbjct: 951 CEQHKETEVNSINVVDNALQSTSPNISEDSFVHAFIRSCLRIKKV-INYRISTLGVEWIA 1009
Query: 3178 GEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIIN 3357
EI+ +F + I EMVG LAAQS+GEPATQMTLNTFHYAGV A+ +T GVPRLKEIIN
Sbjct: 1010 NEIKKKFVRGIISTNEMVGTLAAQSIGEPATQMTLNTFHYAGV-AQAITQGVPRLKEIIN 1068
Query: 3358 VSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAED 3537
V+K ++TPS ++L + E+AK V ++E+ ++ V I YDP T+I ED
Sbjct: 1069 VAKNIRTPSHKIYLKPGST--IEQAKKVASEIEYINIEMVCSEIKIIYDPKVDTTIINED 1126
Query: 3538 EEWVSIFYEMPDH--DLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIY 3711
++V ++E PD L +PWLLR+ + R R++ L E IA +I F D+ ++
Sbjct: 1127 RDFVEAYFEFPDEYVSLDTLNPWLLRLVVARDRLISNNLDFEFIAQKIKKVFHQDIFLLH 1186
Query: 3712 TDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYM 3891
+D NAE+LV R+R+ G E + + R + N + + L+GI I ++Y+
Sbjct: 1187 SDANAEELVIRIRVLGMSANE-----------EFYRRLL--NTILGIHLKGITNIRRIYL 1233
Query: 3892 NQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVL 4071
+ +WIL+TDG L ++L I + ND+ E++EVL
Sbjct: 1234 ------------------LREREEWILQTDGKNLKQLLLVEDILANKVYCNDLLEVYEVL 1275
Query: 4072 GIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 4251
GIEAVR+ I RE+ NVI +GSYVN+RHL LLCDVMT KG L ITRHG NR GAL R
Sbjct: 1276 GIEAVRECILRELRNVIEAEGSYVNFRHLYLLCDVMTLKG-LRGITRHGANRAATGALKR 1334
Query: 4252 CSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLD------------- 4392
CSFEETV+IL+EA+ AE + +GV+ENIMLGQLA GTG +LD
Sbjct: 1335 CSFEETVEILLEASCFAERNYCRGVTENIMLGQLAPIGTGNTICILDKKALRSVIPVAKS 1394
Query: 4393 ---------------VEKCKYG-MEIPQNVVMGGGFYGSFA------GSPSNREFSPAHS 4506
V +YG +P + + G+ SP+ SPA+S
Sbjct: 1395 FDFLGEVATPVIRSPVSDVRYGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYS 1454
Query: 4507 PWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALS 4683
P + +PT A+SPT+ SP +SP SP +SP SP A S
Sbjct: 1455 PTSPAYSPT--SPAYSPTSPAYSPTSPAYSPTSPAYSPTSP----AYSPTSP-----AYS 1503
Query: 4684 PRTPSYGGMSPGVYSPSSPQF 4746
P +P+Y SP YSP+SP +
Sbjct: 1504 PTSPAYSPTSP-AYSPTSPAY 1523
>gi|50346887|gb|AAT75150.1| RNA polymerase 2 [Caenorhabditis sp.
DF5070]
Length = 606
Score = 1109 bits (2869), Expect = 0.0
Identities = 549/604 (90%), Positives = 576/604 (94%)
Frame = +1
Query: 2395 HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 2574
HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1 HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60
Query: 2575 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNK 2754
ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQ+MPTMKPN+AVFERDFR DLTD
Sbjct: 61 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNDAVFERDFRTDLTDEL 120
Query: 2755 FLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIW 2934
F++K YSEDV+R++ ES D I VESEW+QLEEDRRLLRKIFP+GDAKIVLPCNLQRL+W
Sbjct: 121 FMKKYYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLRKIFPKGDAKIVLPCNLQRLMW 180
Query: 2935 NAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRST 3114
NAQKIFKVD+RKPVNLSPLHVI GVRELSKKL+IV G+D+ISKQAQYNATLLMNILLRST
Sbjct: 181 NAQKIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDDISKQAQYNATLLMNILLRST 240
Query: 3115 LCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 3294
LCTK +CT SKLN+EAFDWLLGE+ESRF QAIAQPGEMVGALAAQSLGEPATQMTLNTFH
Sbjct: 241 LCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 300
Query: 3295 YAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKK 3474
YAGVSAKNVTLGVPRLKEIINVSK LKTPSLTVFL GAAA+D EKAKDVLCKLEHTTLKK
Sbjct: 301 YAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLIGAAARDAEKAKDVLCKLEHTTLKK 360
Query: 3475 VTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM 3654
VT NTAIYYDPDPKNTVI EDEEWVSIFYEMPD D +RTSPWLLRIELDRKRM DKKLTM
Sbjct: 361 VTANTAIYYDPDPKNTVINEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKKLTM 420
Query: 3655 EMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEA 3834
EMIADRIH GFGNDVHTIYTDDNAEKLVFRLRIAG+DKGE QEEQVDKMEDDVFLRCIEA
Sbjct: 421 EMIADRIHSGFGNDVHTIYTDDNAEKLVFRLRIAGDDKGEGQEEQVDKMEDDVFLRCIEA 480
Query: 3835 NMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSER 4014
NML+DLTLQGIP+ISKVYMNQPNTDDKKR +IT EGGFKS+ +WILETDGTALLRVL+E+
Sbjct: 481 NMLADLTLQGIPSISKVYMNQPNTDDKKRTVITDEGGFKSITEWILETDGTALLRVLAEQ 540
Query: 4015 QIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGH 4194
QIDPVRTTSNDICEIFEVLGIEAVRKAIEREM NVISFDGSYVNYRHLALLCDVMTAKGH
Sbjct: 541 QIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKGH 600
Query: 4195 LMAI 4206
LMAI
Sbjct: 601 LMAI 604
>gi|50346863|gb|AAT75141.1| RNA polymersae 2 [Caenorhabditis sp.
PS1010]
Length = 601
Score = 1105 bits (2859), Expect = 0.0
Identities = 553/600 (92%), Positives = 571/600 (95%), Gaps = 1/600 (0%)
Frame = +1
Query: 2395 HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 2574
HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM
Sbjct: 1 HFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAM 60
Query: 2575 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNK 2754
ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQ+MPTMKPNNAVFERDFR DLTD++
Sbjct: 61 ESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQSMPTMKPNNAVFERDFRTDLTDDR 120
Query: 2755 FLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIW 2934
FL +Y+EDV+RE+QES + I +ESEW+QL EDRRLLRKIFP+GDAKIVLPCNLQRL+W
Sbjct: 121 FLENSYTEDVIRELQESSEAIEKIESEWAQLSEDRRLLRKIFPKGDAKIVLPCNLQRLMW 180
Query: 2935 NAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRST 3114
NAQKIFKVD RKPVNLSPLHVI GVRELSKKLIIV GND+ISKQAQYNATLLMNILLRST
Sbjct: 181 NAQKIFKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDDISKQAQYNATLLMNILLRST 240
Query: 3115 LCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 3294
LCTK MCT SKLN+EAFDWLLGEIESRF QAIAQPGEMVGALAAQSLGEPATQMTLNTFH
Sbjct: 241 LCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMVGALAAQSLGEPATQMTLNTFH 300
Query: 3295 YAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKK 3474
YAGVSAKNVTLGVPRLKEIINVSK LKTPSLTVFLTGAAAKD EKAKDVLCKLEHTTLKK
Sbjct: 301 YAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKK 360
Query: 3475 VTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTM 3654
VT NTAIYYDPDPKNTVI EDEEWVSIFYEMPD D +RTSPWLLRIELDRKRM DKKLTM
Sbjct: 361 VTANTAIYYDPDPKNTVIGEDEEWVSIFYEMPDFDTTRTSPWLLRIELDRKRMTDKKLTM 420
Query: 3655 EMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK-GEAQEEQVDKMEDDVFLRCIE 3831
EMIADRIH GFG DVHTIYTDDNAEKLVFRLRIAGEDK E QEEQVDKMEDDVFLRCIE
Sbjct: 421 EMIADRIHSGFGQDVHTIYTDDNAEKLVFRLRIAGEDKAAEGQEEQVDKMEDDVFLRCIE 480
Query: 3832 ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSE 4011
ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT EGGFKS+ +WILETDGTALLRVLSE
Sbjct: 481 ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITEEGGFKSITEWILETDGTALLRVLSE 540
Query: 4012 RQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKG 4191
RQIDPVRT+SNDICEIFEVLGIEAVRKAIEREM NVISFDGSYVNYRHLALLCDVMTAKG
Sbjct: 541 RQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNYRHLALLCDVMTAKG 600
>gi|50346883|gb|AAT75148.1| RNA polymerase 2 [Caenorhabditis sp.
SB341]
Length = 622
Score = 1092 bits (2825), Expect = 0.0
Identities = 542/621 (87%), Positives = 578/621 (92%), Gaps = 1/621 (0%)
Frame = +1
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKP 2703
VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQM+QLRYGEDGLDGMWVENQ+MPTMKP
Sbjct: 61 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQSMPTMKP 120
Query: 2704 NNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFP 2883
NAVFE+DFR+DL D + L+ Y E VVR+++E+ D I VE+EW+QLEEDRRLLRKIFP
Sbjct: 121 TNAVFEKDFRLDLADERTLKSCYEEHVVRQLKEAPDAIEKVEAEWNQLEEDRRLLRKIFP 180
Query: 2884 RGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISK 3063
GDAK+VLPCNLQRLIWNAQKIFKVDLRKP NLSPLHVI GVRE+SKKLIIVSG+D+ISK
Sbjct: 181 TGDAKVVLPCNLQRLIWNAQKIFKVDLRKPTNLSPLHVIEGVREVSKKLIIVSGSDDISK 240
Query: 3064 QAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALA 3243
QAQYNATLLMNILLRSTLC+K M T +KLN+EAFDWLLGE+ESRF Q+IAQPGEMVGALA
Sbjct: 241 QAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQPGEMVGALA 300
Query: 3244 AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDP 3423
AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK LKTPSLTVFL GAAAKD
Sbjct: 301 AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDA 360
Query: 3424 EKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWL 3603
EKAKDVLCKLEHTTLKKVT NTAIYYDPDPKNTVI EDEEWVSIFYEMPD D S+ SPW+
Sbjct: 361 EKAKDVLCKLEHTTLKKVTSNTAIYYDPDPKNTVIGEDEEWVSIFYEMPDFDPSKASPWM 420
Query: 3604 LRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK-GEAQ 3780
LRIELDRKRM DKKL+ME IAD+IH GFGND+H IY DDNA+ LVFRLRIAG+DK +AQ
Sbjct: 421 LRIELDRKRMTDKKLSMEHIADKIHSGFGNDLHVIYNDDNADHLVFRLRIAGDDKSSDAQ 480
Query: 3781 EEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVA 3960
EEQVDKMEDD FLRCIEANMLSDL+LQGIPAI K YM +P TDDKKRIIITPEGGFK++
Sbjct: 481 EEQVDKMEDDXFLRCIEANMLSDLSLQGIPAILKGYMYKPTTDDKKRIIITPEGGFKAIP 540
Query: 3961 DWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSY 4140
+WILETDGTALLRVLSER IDPVRT+SNDICEIFEVLGIEAVRKAIEREM NVISFDGSY
Sbjct: 541 EWILETDGTALLRVLSERHIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSY 600
Query: 4141 VNYRHLALLCDVMTAKGHLMA 4203
VNYRHLALLCDVMTAKGHLMA
Sbjct: 601 VNYRHLALLCDVMTAKGHLMA 621
>gi|1916659|gb|AAB51210.1| large subunit RNA polymerase II [Cruznema
tripartitum]
Length = 633
Score = 1079 bits (2790), Expect = 0.0
Identities = 532/634 (83%), Positives = 583/634 (91%), Gaps = 2/634 (0%)
Frame = +1
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRLIKAMESVMVNYDGTVRNS+ QMVQLRYGEDGLDGMWVENQN+PTMKP NAV
Sbjct: 61 ETGYIQRRLIKAMESVMVNYDGTVRNSIGQMVQLRYGEDGLDGMWVENQNLPTMKPTNAV 120
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDA 2895
FE++F++DL D K LR+ Y+EDVVR++Q S + + VESEW+QLEEDRRLLRKIFP GDA
Sbjct: 121 FEKEFKLDLADEKTLRRFYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLRKIFPTGDA 180
Query: 2896 KIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQY 3075
KIVLPCNL+RL+WNAQKIF V++RKP +L+PL VI GVRELSKKL+IV G D ISKQAQY
Sbjct: 181 KIVLPCNLKRLLWNAQKIFHVEMRKPTDLNPLRVIEGVRELSKKLVIVGGEDRISKQAQY 240
Query: 3076 NATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSL 3255
NATLLMNILLRSTLC+K M + KLN EAFDWLLGE+E+RFQQ IAQPGEMVGALAAQSL
Sbjct: 241 NATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQPGEMVGALAAQSL 300
Query: 3256 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAK 3435
GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK LKTPSLTVFL G AA+D +KAK
Sbjct: 301 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKMLKTPSLTVFLRGVAARDADKAK 360
Query: 3436 DVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIE 3615
DVLCKLEHTTL+KVT NTAIYYDPDPKNT I EDEEWVSIFYEMPD D SR+SPWLLR+E
Sbjct: 361 DVLCKLEHTTLRKVTANTAIYYDPDPKNTCIEEDEEWVSIFYEMPDFDPSRSSPWLLRLE 420
Query: 3616 LDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGE--DKGEAQEEQ 3789
LDRKRM DKKLTME IADRIH GFG+D++ IYTDDNA+KLVFRLRI + DKG EEQ
Sbjct: 421 LDRKRMTDKKLTMEQIADRIHQGFGDDLNVIYTDDNADKLVFRLRITNQDGDKG-GDEEQ 479
Query: 3790 VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWI 3969
VDKMEDD+FLRCIE+NMLSDLTLQGI +ISKVYM++P TDDKKR+IITPEGGFK++ +WI
Sbjct: 480 VDKMEDDMFLRCIESNMLSDLTLQGITSISKVYMHKPTTDDKKRVIITPEGGFKAIPEWI 539
Query: 3970 LETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNY 4149
LETDGTALL+VLSE+ +D VRTTSNDICEIFE+LGIEAVRK+IEREM+NVISFDGSYVNY
Sbjct: 540 LETDGTALLKVLSEQHVDSVRTTSNDICEIFEILGIEAVRKSIEREMNNVISFDGSYVNY 599
Query: 4150 RHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 4251
RHLALLCDVMTAKGHL+AITRHGINRQEVG LMR
Sbjct: 600 RHLALLCDVMTAKGHLLAITRHGINRQEVGCLMR 633
>gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit
[Pedetontus saltator]
Length = 722
Score = 1072 bits (2772), Expect = 0.0
Identities = 516/722 (71%), Positives = 613/722 (84%), Gaps = 4/722 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID VGVPR+IAQNLTFPEIVTPFN+DK+Q+LV RG++QYPGAK
Sbjct: 1 SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPGAKYIIR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG R+DLR+HP+ +DLHLQ GY+VERH+++GD+I+FNRQPTLHKMSMMGHRVK+LPWST
Sbjct: 61 DNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNRQPTLHKMSMMGHRVKVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVTSPYNADFDGDEMNLH+PQS+ETRAE+E I + RQ+ITPQANKPVMGIVQDT
Sbjct: 121 FRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHITXRQIITPQANKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF++ MM++LM+LP WDGK+PQPAILKPKP+WTGKQVFSLIIPGNVN
Sbjct: 181 LTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPAILKPKPMWTGKQVFSLIIPGNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
++RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ LELG
Sbjct: 241 MIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICMLELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+E+A FY +IQTVIN WL+ EGH+IGIGDTIAD TYL+IQ I+KAK+DV++VI+KAH
Sbjct: 301 HEVAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
N +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN INI
Sbjct: 361 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIK GPES+GFVENSYLAGLTPSEFFFHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKXXXGPESRGFVENSYLAGLTPSEFFFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGT+RNS+ Q++QLRYGEDGL G V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q PT+K +N VFE+ F+ D T+ ++LR+ ++ED+++E+ S + IS +E EW QL++
Sbjct: 541 EFQTQPTIKLSNKVFEKKFKFDPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQLQK 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLI 3033
DR LR+IFP GD K VLPCNLQR+IWN QKIF ++ R +LSPL VI GV+ L K I
Sbjct: 601 DRDCLRQIFPNGDNKTVLPCNLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQHLLSKCI 660
Query: 3034 IVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIA 3213
IV+G D +SK A NATLL L+RSTLCT+ + + +L+SEAF+WL GEIE+RFQQA
Sbjct: 661 IVAGEDHLSKLANENATLLFRCLVRSTLCTRRVAEEFRLSSEAFEWLTGEIETRFQQAQV 720
Query: 3214 QP 3219
QP
Sbjct: 721 QP 722
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit
[Psilotum nudum]
Length = 1013
Score = 1072 bits (2771), Expect = 0.0
Identities = 548/1021 (53%), Positives = 713/1021 (69%), Gaps = 17/1021 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HLELAKP+FHIG L L ILRCVC+ C R+L D+ R + K N K RL + D
Sbjct: 1 HLELAKPMFHIGVLKTVLTILRCVCYNCSRILADEEDHRFKQARKIR--NPKHRLRRMLD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK----K 591
CK KS CEG GGCG QP G+ I AE+K K
Sbjct: 59 CCKTKSKCEGGDDIDEDQGHDNEEAEKKKKH--GGCGAQQPKITIDGMKIIAEFKASKKK 116
Query: 592 NVNEDTQ-----ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
N +D ERK L+AE+VL + +QI+DED + +G++P++ARP+WMI
Sbjct: 117 NEEQDQYMPEPVERKQQLSAEKVLSILKQISDEDCVTLGLNPKYARPDWMILQVLPIPPP 176
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
SA+++DDLTH+L+ II+ N L+R E NGA H++ + +LLQFH+AT
Sbjct: 177 SVRPSVMMDTSARSEDDLTHQLAMIIRHNNNLKRQEQNGAPTHIINEFAQLLQFHIATYF 236
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
DN +PG P ATQ+ GRP+KSI QRLK KEGRIRGNLMGKRVDFSARTVIT DPN+ ID +
Sbjct: 237 DNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDEL 296
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRA 1275
GVP +IA NLT+PE VTP+N+++L+ELV G PG +E+G R+DLR+ ++
Sbjct: 297 GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGARYIIREDGQRLDLRFLKKS 356
Query: 1276 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
+D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGH+++I+P+STFR+NLSVTSPYNAD
Sbjct: 357 SDRHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHKIRIMPFSTFRLNLSVTSPYNAD 416
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PV+GIVQDTL R +TKRD FI
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFI 476
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
+ M++LM+ +DGK+P P ILKPKPLWTGKQ+FSLIIP +N++R + H DSE
Sbjct: 477 EKDVFMNILMWWEDFDGKIPAPTILKPKPLWTGKQLFSLIIPKQINLIRFSAWHLDSEVG 536
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
I+PGDT V IE GEL+SG +C KT+G S G+L+HV+ E+G + A F H Q +
Sbjct: 537 E----ITPGDTVVRIEKGELISGTLCKKTLGTSGGSLIHVIWEEVGPDAARKFLGHTQWL 592
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL++ G +IGIGDTIAD AT I +I KAK +V ++I+ A LE PG T +
Sbjct: 593 VNYWLLQHGFSIGIGDTIADAATMEKINESIAKAKNEVKELIKMAQEKQLEAEPGRTTME 652
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
+FEN+VNQ+LN ARD GSSAQ+SLSE NN INISQ+IACVGQQNVEG
Sbjct: 653 SFENRVNQVLNRARDDAGSSAQRSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEG 712
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 713 KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+KAME VMV YDGTVRNSL +++ YGEDG+D +W+E+Q + +MK
Sbjct: 773 ETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIEFLYGEDGMDAVWIESQKLDSMKMKTKE 832
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRR-LLRKIFPRGD 2892
F+R + ++ + + V +++ ++ ++ ++E +LE DRR L +I P GD
Sbjct: 833 FDRMYMFEIDSENWNPDYMLAEHVEDLKTIQEFRNVFDAEVQKLEADRRQLCTEIAPSGD 892
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
LP NL+RLIWNAQKIFKVD RKP ++ P+ ++ V +L ++L +V G DEISK+AQ
Sbjct: 893 NSWPLPVNLKRLIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQERLKVVPGEDEISKEAQ 952
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRSTL +K + + +L EAF+W++GEIE+RF Q+I PGEM+G +AAQS
Sbjct: 953 KNATLFFNILLRSTLASKRVLKEYRLTKEAFEWVIGEIETRFLQSIVAPGEMIGCVAAQS 1012
Query: 3253 L 3255
+
Sbjct: 1013 I 1013
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea
mays]
Length = 1009
Score = 1069 bits (2765), Expect = 0.0
Identities = 542/1021 (53%), Positives = 720/1021 (70%), Gaps = 17/1021 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HLELAKP+FHIGF+ L I+RCVCF C ++L D+ + + LK N K RL IYD
Sbjct: 1 HLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQALKIR--NPKNRLKRIYD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK---KN 594
CK+K VC G GGCG QP+ G+ + AE+K K
Sbjct: 59 ACKSKKVCAGGDDLDVQEQDTDEPIKKR-----GGCGAQQPNITVDGMKMVAEFKAPKKK 113
Query: 595 VNEDTQ-----ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXX 759
++ Q ERK +L+AERVL V ++I+DED L++G++P++ARP+WMI
Sbjct: 114 TDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPP 173
Query: 760 XXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVD 939
S++++DDLTH+L+ II+ N+ L+R E NGA AH++T+ +LLQFH+AT D
Sbjct: 174 VRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFD 233
Query: 940 NCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVG 1119
N +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DPN+ ID +G
Sbjct: 234 NDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELG 293
Query: 1120 VPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRAA 1278
VP +IA NLT+PE VTP+N+++L+ELV G PG +E+G R+DLRY +++
Sbjct: 294 VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSS 353
Query: 1279 DLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADF 1458
D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSVTSPYNADF
Sbjct: 354 DQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 413
Query: 1459 DGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 1638
DGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKRD I+
Sbjct: 414 DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIE 473
Query: 1639 WPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSG 1818
M++LM+ +DGK+P P ILKP+P+WTGKQVF+LIIP +N++R + H + E
Sbjct: 474 KDVFMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKG- 532
Query: 1819 PYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 1998
+I+PGDT V IE GELLSG +C K++G +G+L+HV+ E+G + A F H Q ++
Sbjct: 533 ---FITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLV 589
Query: 1999 NAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQT 2178
N WL++ G +IGIGDTIAD +T I +TI KAK V ++I+KAH LE PG T+ ++
Sbjct: 590 NYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMES 649
Query: 2179 FENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGK 2358
FEN+VNQ+LN ARD GSSAQ SLSE NN INISQ+ ACVGQQNVEGK
Sbjct: 650 FENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 709
Query: 2359 RIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 2538
RIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+E
Sbjct: 710 RIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 769
Query: 2539 TGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVF 2718
TGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K F
Sbjct: 770 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEF 829
Query: 2719 ERDFRMDLTDNKFLRKNYS-EDVVREIQESEDGISLVESEWSQLEEDR-RLLRKIFPRGD 2892
+ FR +L D + R NY + V +++ + ++ E+E +LE DR +L +I GD
Sbjct: 830 DNVFRYELDDENW-RPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGD 888
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
+P NL+RLIWNAQK FK+D R+P ++ P+ ++ + +L ++L +V G+D +S +AQ
Sbjct: 889 NSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQ 948
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRST +K + + +L EAF+W++GEIESRF Q++ PGEM+G +AAQS
Sbjct: 949 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1008
Query: 3253 L 3255
+
Sbjct: 1009 I 1009
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit
[Amborella trichopoda]
Length = 1013
Score = 1066 bits (2758), Expect = 0.0
Identities = 543/1021 (53%), Positives = 712/1021 (69%), Gaps = 17/1021 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HLELAKP+FHIGFL L ++RCVCF C R+L D+ R + LK N K RL + D
Sbjct: 1 HLELAKPMFHIGFLKTVLSVMRCVCFNCSRILADEEDHRFKQALKIR--NPKTRLKKVLD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK---KN 594
CK K+ CEG GGCG QP G + AE+K K
Sbjct: 59 CCKNKTKCEGGDDIDEDQAQDSEEVVKKKRH--GGCGAQQPKITIEGTKMVAEYKAPRKK 116
Query: 595 VNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
+E Q ERK L AE+VL V ++ITDED ++G++P++ARP+WMI
Sbjct: 117 NDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPKYARPDWMILQVMPIPPP 176
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
S++++DDLTH+L+ +I+ N+ L+R E NGA AH++++ +LLQFHVAT
Sbjct: 177 PVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAHIISEFAQLLQFHVATYF 236
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP + ID +
Sbjct: 237 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDEL 296
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRA 1275
GVP +IA NLT+PE VTP+N+++L+ELV G PG +E+G R+DLRY ++
Sbjct: 297 GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 1276 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
D HL+ GY+VERH+ DGD + FNRQP+LHKMS+MGHR+KI+P+STFR+NLSVTSPYNAD
Sbjct: 357 GDHHLELGYKVERHLNDGDFVFFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKRD FI
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
+ M++LM+ +DGK+P PAILKP+PLWTGKQVF+LIIP +N++R + H +SE
Sbjct: 477 EKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESESG 536
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
+I+PGDT V IE GELLSG +C KT+G S+G+L+HV+ E+G + A F H Q +
Sbjct: 537 ----FITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWL 592
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL+++ +IGIGDTIAD AT I TI KAK +V ++I+ A LE PG T+ +
Sbjct: 593 VNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMME 652
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
+FEN+VNQ+LN ARD GSSAQKSLSE NN INISQ+ ACVGQQNVEG
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 713 KRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K A
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAE 832
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL-RKIFPRGD 2892
FE ++ ++ + + V +++ + ++ ++E +LE DR L +I GD
Sbjct: 833 FENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGD 892
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
+P NL+RLIWNAQK+FKVDLR+P ++ P+ ++ V +L ++L +V G+D +S +AQ
Sbjct: 893 NSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQ 952
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRST +K + + +L EAFDW++GEIESRF Q++ PGEM+G +AAQS
Sbjct: 953 KNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQS 1012
Query: 3253 L 3255
+
Sbjct: 1013 I 1013
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia
muricata]
Length = 1013
Score = 1066 bits (2756), Expect = 0.0
Identities = 540/1021 (52%), Positives = 717/1021 (69%), Gaps = 17/1021 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HLELAKP++HIGF+ L ILR VCF C R+L D+ R + LK N K RL + D
Sbjct: 1 HLELAKPMYHIGFMKTVLSILRSVCFDCSRILADEEDHRFKQALKIK--NPKHRLRKVLD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK---KN 594
CK K CEG GGCG QP G+ I AE+K K
Sbjct: 59 CCKNKVKCEGGDEIEDDQAQDGEETAKKKRH--GGCGAQQPKISIDGMKIIAEYKATRKK 116
Query: 595 VNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
+E Q ERK L+AE+VL++ ++I+DED ++G++P++ARP+WMI
Sbjct: 117 ADEQEQLMPEPVERKQQLSAEKVLDILKRISDEDCQLLGLNPKYARPDWMILQVLPIPSP 176
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
+A+++DDLTH+L+ II+ N+ L+R E NGA AH++T+ +LLQFH+AT
Sbjct: 177 PVRPSVMMNTTARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYF 236
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DPN+ ID +
Sbjct: 237 DNDLPGQPRATQRSGRPIKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQL 296
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRA 1275
GVP +IA NLT+PE VTP+N+++L+ELV+ G PG +++G R+DLRY ++
Sbjct: 297 GVPWSIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKS 356
Query: 1276 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
+D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSVTSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKRD FI
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
+ M++LM+ +DGK+P P ILKP+PLWTGKQVF+LIIP +N++R + H +SE
Sbjct: 477 EKDVFMNILMWWEDFDGKIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETG 536
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
+I+PGDT V IE GE+LSG +C KT+G S+G+L+HV+ E+G + A F H Q +
Sbjct: 537 ----FITPGDTVVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWL 592
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL+++G +IGIGDTIAD AT I TI KAK +V +I+ AH LE PG T+ +
Sbjct: 593 VNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVNHLIQLAHQKALEAXPGRTMME 652
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
+FEN+VNQ+LN ARD GSSAQKSLSE NN INISQ+ ACVGQQNVEG
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFG R+LPHF +DDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 713 KRIPFGLFGRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRPE 832
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL-RKIFPRGD 2892
FE +R ++ + + + V +++ + ++ ++E +LE DRR L +I P GD
Sbjct: 833 FENVYRYEIDNENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRRQLGTEIAPSGD 892
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
+P NL+RLIWNAQK FK+DLRKP ++ P+ ++ V +L ++L +V G+D +S +AQ
Sbjct: 893 NSWPMPVNLKRLIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQ 952
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRST +K + + +L EAF+W++GEIESRF Q++ PGEM+G +AAQS
Sbjct: 953 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1012
Query: 3253 L 3255
+
Sbjct: 1013 I 1013
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit
[Nymphaea odorata]
Length = 1013
Score = 1065 bits (2754), Expect = 0.0
Identities = 542/1021 (53%), Positives = 712/1021 (69%), Gaps = 17/1021 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HLELAKP+FHIGF+ L ILRCVCF C +L D+ R + LK N K RL + D
Sbjct: 1 HLELAKPMFHIGFMKTVLAILRCVCFNCSHILADEEDHRFKQALKIR--NPKARLKKVLD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK---KN 594
CK+K CEG GGCG QP G+ I AE+K K
Sbjct: 59 CCKSKQKCEGGDDIDEDQGQDLEDAPKKKKR--GGCGAMQPKITIEGMKIIAEYKVPRKK 116
Query: 595 VNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
+E Q ERK L+AERVL V ++I+DED L++G++P++ARP+WMI
Sbjct: 117 SDEQEQMLPEPVERKQQLSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPP 176
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
S++++DDLTH+L+ II+ N+ L+R E NGA AH++++ +LLQFH+AT
Sbjct: 177 PVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 236
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP + ID +
Sbjct: 237 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDEL 296
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRA 1275
GVP +IA N+T+PE VTP+N+++L+ELV G PG +E+G RVDLRY ++
Sbjct: 297 GVPWSIALNMTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIREDGQRVDLRYLRKS 356
Query: 1276 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
+D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSVTSPYNAD
Sbjct: 357 SDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMN+H+PQ ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKRD FI
Sbjct: 417 FDGDEMNMHVPQCFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
+ M++LM+ +DGK+P PAI+KP+PLWTGKQVF+LIIP +N++R + H +SE
Sbjct: 477 EKDVFMNILMWWEDFDGKIPAPAIMKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESETG 536
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
+I+PGDT V IE GELLSG +C KT+G S+G+L+HV+ E+G + A F H Q +
Sbjct: 537 ----FITPGDTCVRIERGELLSGTLCKKTMGTSSGSLIHVIWEEVGPDAARKFLGHTQWL 592
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL++ +IGIGDTIAD +T I TI KAK +V ++I+ A LE PG T+ +
Sbjct: 593 VNYWLLQNAFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMME 652
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
+FEN+VNQ+LN ARD GSSAQ+SLSE NN INISQ+ ACVGQQNVEG
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 713 KRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K +
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSE 832
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRR-LLRKIFPRGD 2892
F++ F+ + D + D V +++ ++ + +E +LE DRR L +I GD
Sbjct: 833 FDKVFKFEFDDENWDPSYLQPDFVEDLKTIKELQDVFHAEVQKLETDRRQLATEIATTGD 892
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
+P NL+RLIWNAQK FKVDLR+P ++ P+ ++ V +L ++L +V G D +S +AQ
Sbjct: 893 NSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGEDAMSMEAQ 952
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRST +K + + +L EAFDW++GEIESRF Q++ GEM+G +AAQS
Sbjct: 953 KNATLFFNILLRSTFASKRVSKEYRLTREAFDWVIGEIESRFLQSLVAAGEMIGCVAAQS 1012
Query: 3253 L 3255
+
Sbjct: 1013 I 1013
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas
revoluta]
Length = 1013
Score = 1064 bits (2752), Expect = 0.0
Identities = 538/1021 (52%), Positives = 719/1021 (69%), Gaps = 17/1021 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HLEL KP++HIGFL L ILR VCF C R+L D+ R + LK N K RL + D
Sbjct: 1 HLELVKPMYHIGFLKTVLSILRSVCFNCSRILADEEDHRFKQALKIK--NPKHRLRKVLD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK---KN 594
CK K+ CEG GGCG QP G+ I AE+K K
Sbjct: 59 CCKNKTKCEGGDEIDDDQAQDGEEMTKKKRH--GGCGAQQPKISIDGMKIIAEYKATRKK 116
Query: 595 VNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
+E Q ERK L+AE+VL++ ++I+DED ++G++P++ARP+WMI
Sbjct: 117 ADEQEQLMPEPVERKQQLSAEKVLDILKRISDEDCQMLGLNPKYARPDWMILQVLPIPPP 176
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
+++++DDLTH+L+ II+ N+ L+R E NGA AH++T+ +LLQFH+AT
Sbjct: 177 PVRPSVMMDTTSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYF 236
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DPN+ ID +
Sbjct: 237 DNDLPGQPRATQRSGRPIKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDEL 296
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRA 1275
GVP +IA NLT+PE VTP+N+++L+ELV+ G PG +++G R+DLRY ++
Sbjct: 297 GVPWSIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKS 356
Query: 1276 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
+D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR++I+P+STFR+NLSVTSPYNAD
Sbjct: 357 SDHHLELGYKVERHLMDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 416
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKRD FI
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
+ M++LM+ +DGK+P P ILKP+PLWTGKQVF+LIIP +N++R + H +SE
Sbjct: 477 EKDVFMNILMWWENFDGKIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETG 536
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
+I+PGDT V IE GE+LSG +C KT+G S+G+L+HV+ E+G + A F H Q +
Sbjct: 537 ----FITPGDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWL 592
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL+++G +IGIGDTIAD AT I TI KAK +V +I+ AH LE PG T+ +
Sbjct: 593 VNYWLLQQGFSIGIGDTIADAATMETINETISKAKAEVNQLIQLAHQKALEAEPGRTMME 652
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
+FEN+VNQ+LN ARD GSSAQKSLSE NN INISQ+ ACVGQQNVEG
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGF R+LPHF +DDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 713 KRIPFGFFGRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K +
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRSE 832
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL-RKIFPRGD 2892
FE +R ++ + + + V +++ + ++ +++ +LE DRR L +I P GD
Sbjct: 833 FENVYRYEIDNENWNPSYMLPEHVEDLKTIREFQNVFDAQVQKLEADRRQLGTEIAPSGD 892
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
+P NL+RLIWNAQK FK+DLRKP ++ P+ ++ V +L ++L +V G+D +S +AQ
Sbjct: 893 NSWPMPVNLKRLIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQ 952
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRST +K + + +L EAF+W++GEIESRF Q++ PGEM+G +AAQS
Sbjct: 953 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1012
Query: 3253 L 3255
+
Sbjct: 1013 I 1013
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit
[Magnolia x soulangeana]
Length = 1010
Score = 1061 bits (2743), Expect = 0.0
Identities = 536/1020 (52%), Positives = 717/1020 (69%), Gaps = 16/1020 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HLELAKP+FHIGFL L I+RCVCF C ++L+D+ + + K N K RL + D
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEDHKFKQSQKIR--NPKHRLRKVLD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK--KNV 597
CK K+ C+G GGCG QP G+ + AE+K +
Sbjct: 59 ACKNKTKCDGGDDIEVRDQDLEEPVKKRR----GGCGAQQPKLTVEGMKMIAEYKATRKK 114
Query: 598 NEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXX 759
N+D + ERK L+AERVL V ++I+DED L++G++P++ARP+WMI
Sbjct: 115 NDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPP 174
Query: 760 XXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVD 939
S++++DDLTH+L+ II+ N+ L+R E NGA AH++++ +LLQFH+AT D
Sbjct: 175 VRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 234
Query: 940 NCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVG 1119
N +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP + ID +G
Sbjct: 235 NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELG 294
Query: 1120 VPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRAA 1278
VP +IA NLT+PE VTP+N+++L+ELV G PG +E+G R+DLRY +++
Sbjct: 295 VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSS 354
Query: 1279 DLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADF 1458
D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSVTSPYNADF
Sbjct: 355 DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 414
Query: 1459 DGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 1638
DGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKRD FI+
Sbjct: 415 DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 474
Query: 1639 WPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSG 1818
M++LM+ +DGK+P P ILKP+PLWTGKQVF+LIIP +N++RT + H ++E
Sbjct: 475 KDVFMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETG- 533
Query: 1819 PYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 1998
+I+PGDT+V IE GELL+G +C KT+G S G+L+HV+ E+G + A F H Q ++
Sbjct: 534 ---FITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 590
Query: 1999 NAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQT 2178
N WL++ G +IGIGDTIAD +T I TI KAK +V ++I+ A LE PG T+ ++
Sbjct: 591 NYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMES 650
Query: 2179 FENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGK 2358
FEN+VNQ+LN ARD GSSAQKSLSE NN INISQ+ ACVGQQNVEGK
Sbjct: 651 FENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 710
Query: 2359 RIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAE 2538
RIP+GF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+E
Sbjct: 711 RIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 770
Query: 2539 TGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVF 2718
TGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K F
Sbjct: 771 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREF 830
Query: 2719 ERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDR-RLLRKIFPRGDA 2895
+ FR + + + + V +++ + ++ ++E +LE DR +L +I GD
Sbjct: 831 DNVFRYEFDNANWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDN 890
Query: 2896 KIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQY 3075
+P NL+RLIWNAQK FKVDLR+P ++ P+ ++ V +L ++L +V G+D +S +AQ
Sbjct: 891 SWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQK 950
Query: 3076 NATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSL 3255
NATL NILLRST +K + + +L EAF+W++GEIESRF Q++ PGEM+G +AAQS+
Sbjct: 951 NATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1010
>gi|13812416|ref|NP_113534.1| DNA-directed RNA polymerase II largest
chain [Guillardia theta]
gi|25288407|pir||A90116 DNA-directed RNA polymerase II largest chain
[imported] - Guillardia theta nucleomorph
gi|12580785|emb|CAC27103.1| DNA-directed RNA polymerase II largest
chain [Guillardia theta]
Length = 1473
Score = 1058 bits (2737), Expect = 0.0
Identities = 605/1500 (40%), Positives = 902/1500 (59%), Gaps = 47/1500 (3%)
Frame = +1
Query: 37 RIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGN 216
+++ +QFGIL P+EI ++SV V+ +E+ PKLGGL+D R G +D+ C T G+
Sbjct: 6 KLIKLIQFGILSPDEILKLSVVQVDSDMTFEHNLPKLGGLLDQRMGTVDKEFFCTTDMGS 65
Query: 217 LTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNS 396
+ PG+FGH+ L +PVFH GF+ L+ILRC+ +L+I++++ ++ +LK N
Sbjct: 66 FLESPGYFGHISLNRPVFHEGFMDYVLRILRCIDHTTSKLIINENSQKIKNVLKIK--NL 123
Query: 397 KKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDIN 576
+RL +I LC A ++ QP Y R G I
Sbjct: 124 SQRLNIISKLCLT------ACNLKKNKFNNFLKDEIIEKRIS-----IQPKYSRDGWCIV 172
Query: 577 AEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
A++ + T E +++AER+ E+F +ITDE +G++P+ +RP+WMI T
Sbjct: 173 AKFDSRI---TSEPTRLVSAERIHEIFVKITDEACEKLGLNPKLSRPDWMIITVLPVPPP 229
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
+ +DDLT+KL DII+TN+ L++ + + ++ + + LLQ+H+ + +
Sbjct: 230 TIRPSVKFETLLRAEDDLTYKLGDIIRTNKILRKAIFSCLPSQLINEQINLLQYHIGSYM 289
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
+N +P L + QK GRP+KSIKQRL+GKEGR+RGNLMGKRVDFSARTVIT DPN+ +D +
Sbjct: 290 NNSVPSLAKSLQKSGRPIKSIKQRLQGKEGRLRGNLMGKRVDFSARTVITPDPNIKLDEL 349
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADL 1284
GVP +IA NLTFPEIVT FN++ ++ L+ G ++PGAK + R+DLRY +++
Sbjct: 350 GVPLSIAMNLTFPEIVTSFNIEYMKFLLYNGPYKHPGAKYLIRNDNNRIDLRYVKYLSNI 409
Query: 1285 HLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDG 1464
+L+ GY VERH+++GD+++FNRQP+LHKMSMMGH VK++ +STFR+NLS TSPYNADFDG
Sbjct: 410 NLENGYCVERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKFSTFRLNLSATSPYNADFDG 469
Query: 1465 DEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWP 1644
DEMNLH PQ++E+++E++ + MV +++PQ NKP+MGIVQD+L ++T++ F+
Sbjct: 470 DEMNLHFPQNVESKSELKNLLMVSNCIVSPQGNKPIMGIVQDSLLGSMLITEKGNFLSKY 529
Query: 1645 FMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPY 1824
+M L + + +P PAI KP+ LWTGKQ+ S IIP +N+ RT +HP+ E +
Sbjct: 530 EIMAYLNLIEGYSLNIPLPAIYKPRILWTGKQLISTIIPC-INLSRTCISHPEHEKA--- 585
Query: 1825 KWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINA 2004
+++ GDT+VII G+LLSG++ +T+G ++G L+HV+ ++G + F S+ Q ++N
Sbjct: 586 -YVTSGDTRVIIFQGQLLSGMIDKRTIGATSGGLIHVIWKDIGPSACSYFISNFQIIVNN 644
Query: 2005 WLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFE 2184
WL G ++GIGD I + D+ I+ AK V I++ + E
Sbjct: 645 WLQLNGFSVGIGDCIPTKMVKKDVSLIIKTAKLFVKKSIKRLLSKKFNGFFNKDSNYNLE 704
Query: 2185 NKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRI 2364
N +N++LN+ARD GSSAQK L+ +NN INISQ++ACVGQQNVEGKRI
Sbjct: 705 NHLNKVLNNARDMAGSSAQKCLTSYNNLKKMIFSGSKGSLINISQIVACVGQQNVEGKRI 764
Query: 2365 PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETG 2544
PFGFR R+LPH+ ++ PE++GFV NSY+ GL P EFFFH+MGGREGLIDTA+KT+ETG
Sbjct: 765 PFGFRKRSLPHYHYKNFEPETRGFVVNSYIEGLFPDEFFFHSMGGREGLIDTAIKTSETG 824
Query: 2545 YIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFER 2724
YIQRRL K+ME ++V YD +VRN+ +++ YGED D +++ENQ + K ++ E
Sbjct: 825 YIQRRLSKSMEDIVVEYDFSVRNNQQEIISFLYGEDCFDAVYLENQKIFLGKMSD--IEM 882
Query: 2725 DFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKI-FPRGDAKI 2901
+ +T + + + + + E++QL +DR LRK+ + D I
Sbjct: 883 NMVYKVTQSSPCFGLAIDSSLLFLSNKSYNSKIANIEYNQLLKDREFLRKLMLDQNDINI 942
Query: 2902 VLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELS--KKLIIVSGNDEIS----- 3060
LP NL R++ A +FK N S ++ +R L + + N +IS
Sbjct: 943 PLPVNLDRIVSKASVLFK----NHKNSSLINFKETIRSLKFLRNYFLELINFKISFNQKK 998
Query: 3061 ---KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMV 3231
KQ L+ I +RS+L K + TK LN A +W++ EI ++++ QPGEMV
Sbjct: 999 SDNKQLINRDNFLLAIYIRSSLSLKIIYTKFNLNQHALNWIVNEICLSIRKSLIQPGEMV 1058
Query: 3232 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAA 3411
G ++AQS+G+PATQMTLNTFH+AGVSAKNVTLGVPRLKEII++ K +K+PSLT+FL
Sbjct: 1059 GTISAQSIGQPATQMTLNTFHFAGVSAKNVTLGVPRLKEIIDIQKNIKSPSLTIFLHKKC 1118
Query: 3412 AKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLS-- 3585
+ DP K K + +E L +++ I YDPD ++ + V + E+PD D++
Sbjct: 1119 SNDPRKVKKIQESIESVRLNRISNYFEIIYDPDFFFSISKCNRILVKNYMEIPDEDINFL 1178
Query: 3586 RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN-DVHTIYTDDNAEKLVFRLR-IAG 3759
+ S W+L+++L + V+K L I + I I +D+N+ + F +R I
Sbjct: 1179 QASSWILKLKLLTEEFVEKGLFSNYIIETIKKKIKPIPFLIIASDENSGSIEFLVRFIWP 1238
Query: 3760 EDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDK-------- 3915
E E+++K+ F R AN + + +S+ +PN K
Sbjct: 1239 EFINNYNSEKIEKL----FSRS-NANTFFEYIKRANQKVSENLFLEPNYFKKIKHYFYNY 1293
Query: 3916 ---------------KRI-IITPE----GGFKSVADWILETDGTALLRVLSERQIDPVRT 4035
+RI II PE G K+ +++LET+G L V++ ID R
Sbjct: 1294 NLKPYGSQKLTKLYPRRIDIIEPEPNQSGKLKNNFEFVLETEGVDLRFVMNYNGIDYSRC 1353
Query: 4036 TSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 4215
T+ND+ E +VLGIEA RK + +E+ N+ISFDGSYVNYRHL L D++T +G LM+I RH
Sbjct: 1354 TTNDLLESLKVLGIEATRKILIQELRNLISFDGSYVNYRHLCTLVDLITFRGSLMSINRH 1413
Query: 4216 GINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDV 4395
GIN+ G + + +FEETVDI E+AV D ++GVS IM G + + GTG DL +++
Sbjct: 1414 GINKCNSGPIAKSTFEETVDIFYESAVFGLNDNLRGVSAQIMTGMVPKIGTGKIDLFVNI 1473
>gi|38232237|gb|AAR14954.1| RNA polymerase II largest subunit
[Armadillidium vulgare]
Length = 736
Score = 1058 bits (2735), Expect = 0.0
Identities = 512/736 (69%), Positives = 621/736 (83%), Gaps = 2/736 (0%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDV ++ MM+LLM+LP WDG++P PAILKPKPLWTGKQ+FSLIIPGN+
Sbjct: 1 TLTAVRKMTKRDVMLEKHEMMNLLMFLPIWDGRMPHPAILKPKPLWTGKQLFSLIIPGNL 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N+++THS HPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G ++G+LLH+ +EL
Sbjct: 61 NLIKTHSAHPDDEDDGPYKWISPGDTKVLVEHGELIMGILCKKTLGSASGSLLHIAWMEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+EIA FY +IQTV+N WL+ EGH+IGIGDTI+D+ TY IQ TI+KAK +V+ VI KA
Sbjct: 121 GHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTISDKDTYRTIQETIKKAKDEVMQVIHKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILN+ARD+TG SA+ SL+E+NN IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNNARDKTGVSAKTSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS++Q++QLRYGEDGL G +
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAGEY 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q MPT+K + FE +R D+T+ ++LR ++EDVVRE+ S + I+++E EW +L+
Sbjct: 361 VEFQKMPTVKLSYRRFEDKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQ 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 3030
EDR LR++FP+GD K+VLPCNL+R+IWN QKIF ++ R +LSP+ V+ GV E +K
Sbjct: 421 EDRVALRQVFPKGDTKVVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKC 480
Query: 3031 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 3210
+IVSG D IS QA NATLL + L+RSTLCTK + + +L +EAF+WL+GEIE+RF QAI
Sbjct: 481 MIVSGEDRISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAI 540
Query: 3211 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 3390
A PGEMVGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLT
Sbjct: 541 ANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 600
Query: 3391 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 3570
VFL GAAA+D EKAK+VLC+LEHTTL+KVT NTAIYYDPDP+NTVI ED+E+V+++YEMP
Sbjct: 601 VFLLGAAARDAEKAKNVLCRLEHTTLRKVTSNTAIYYDPDPQNTVIEEDQEFVNVYYEMP 660
Query: 3571 DHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 3750
D D+SR SPWLLRIELDRK+M DKKLTME I+ +I+ GFG+D++ I+ DDNAEKLV R+R
Sbjct: 661 DFDVSRISPWLLRIELDRKKMTDKKLTMEQISQKINSGFGDDLNCIFNDDNAEKLVLRIR 720
Query: 3751 -IAGEDK-GEAQEEQV 3792
I G+DK + EEQV
Sbjct: 721 IIVGDDKLADEAEEQV 736
>gi|50346876|gb|AAT75145.1| RNA polymerase 2 [Rhabditella axei]
Length = 621
Score = 1058 bits (2735), Expect = 0.0
Identities = 520/621 (83%), Positives = 572/621 (91%)
Frame = +1
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTP+EFFFHAMGGREGLIDTA
Sbjct: 1 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTA 60
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKP 2703
VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQM+QLRYGEDGLDGMWVENQNMPTMKP
Sbjct: 61 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMIQLRYGEDGLDGMWVENQNMPTMKP 120
Query: 2704 NNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFP 2883
NA+FE++F++DLTD K LRK Y+E+VVR++Q S + + VESEW QLEEDRRLLRKIFP
Sbjct: 121 TNAMFEKEFKLDLTDEKTLRKFYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLRKIFP 180
Query: 2884 RGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISK 3063
GDAKIVLPCNLQRLIWNAQKIF V+ RKP +L+PL VI G++ELS KLIIVSG D IS+
Sbjct: 181 TGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKLIIVSGEDRISQ 240
Query: 3064 QAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALA 3243
QAQYNATLLMNIL+RSTLC+K M + KLN+E+F+WL+GEIE+RF+QAIAQPGEMVGALA
Sbjct: 241 QAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGEIETRFKQAIAQPGEMVGALA 300
Query: 3244 AQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDP 3423
AQSLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVSK LKTPSLTV+L GAAAKD
Sbjct: 301 AQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLIGAAAKDA 360
Query: 3424 EKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWL 3603
EKAKDVLCKLEHTTL+KVT NTAIYYDPD KNT I EDEEWVSIFYEMPD D SR+SPWL
Sbjct: 361 EKAKDVLCKLEHTTLRKVTANTAIYYDPDIKNTCIEEDEEWVSIFYEMPDFDPSRSSPWL 420
Query: 3604 LRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQE 3783
LR+ELDRKRM DKKLTME IAD+IH GFG+D++ IYTDDNA+KLVFRLRI D A+E
Sbjct: 421 LRLELDRKRMTDKKLTMEQIADKIHQGFGDDLNVIYTDDNADKLVFRLRITSSDDKGAEE 480
Query: 3784 EQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVAD 3963
EQ+DKMEDDVFLRCIE+NMLSDLTLQG+ ISKVYM++P TDDKKRIIITPEG FK++ +
Sbjct: 481 EQIDKMEDDVFLRCIESNMLSDLTLQGVTQISKVYMHKPTTDDKKRIIITPEGAFKAIRE 540
Query: 3964 WILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYV 4143
W+LETDGTALL+VLSE+ IDP RTTSNDICEIFEVLGIEAVRK+IEREM+NVISFDGSYV
Sbjct: 541 WLLETDGTALLKVLSEQHIDPARTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYV 600
Query: 4144 NYRHLALLCDVMTAKGHLMAI 4206
NYRHLALLCDVMTAKGHLMAI
Sbjct: 601 NYRHLALLCDVMTAKGHLMAI 621
>gi|1778036|gb|AAB40621.1| RNA polymerase II large subunit
Length = 631
Score = 1056 bits (2731), Expect = 0.0
Identities = 523/632 (82%), Positives = 575/632 (90%)
Frame = +1
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
E GYIQRRLIKAMESVMV YDGTVRNSLAQMVQLRYGEDGLDGMWVENQ MPTMKP+N++
Sbjct: 61 EAGYIQRRLIKAMESVMVCYDGTVRNSLAQMVQLRYGEDGLDGMWVENQTMPTMKPSNSL 120
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDA 2895
FERDF+MDL+D + L++ Y+EDV+R++Q S + I E EW QL++DR+LLRKIFP+GDA
Sbjct: 121 FERDFKMDLSDERTLKRLYTEDVIRDVQSSSESIKEAELEWMQLQDDRQLLRKIFPKGDA 180
Query: 2896 KIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQY 3075
KIVLPCNLQRLIWNAQKIF V+ RK +L+P+ VI GVRE+SKKLIIV G+D IS QAQY
Sbjct: 181 KIVLPCNLQRLIWNAQKIFHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDDRISVQAQY 240
Query: 3076 NATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSL 3255
NATLLMNIL+RSTLC K M K KLN+EAF+WLLGEIE+RFQQAIAQPGEMVGALAAQSL
Sbjct: 241 NATLLMNILVRSTLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSL 300
Query: 3256 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAK 3435
GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK KTPSLTVFL GAAAKD EKAK
Sbjct: 301 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLEGAAAKDAEKAK 360
Query: 3436 DVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIE 3615
DVLCKLEHTTL+KVT NTAIYYDPDP++T I EDEEWVSIFYEMPD D SR SPWLLR+E
Sbjct: 361 DVLCKLEHTTLRKVTANTAIYYDPDPQSTCIEEDEEWVSIFYEMPDFDPSRASPWLLRLE 420
Query: 3616 LDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVD 3795
LDRKRM DKKLTME IAD+IH GFG+D++ IYTDDNA+KLVFRLRI +DKG +EEQVD
Sbjct: 421 LDRKRMTDKKLTMEAIADKIHHGFGDDLNVIYTDDNADKLVFRLRITNQDKG-GEEEQVD 479
Query: 3796 KMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILE 3975
KMEDD+FLRCIEANMLSDLTLQGI AISKVYM++P TDDKK+ I+TP+G FK++ +WILE
Sbjct: 480 KMEDDMFLRCIEANMLSDLTLQGIEAISKVYMHKPTTDDKKKTIVTPDGSFKAIPEWILE 539
Query: 3976 TDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRH 4155
TDGTALL+VLSE+ +D RT SNDICEIFE+LGIEAVRKAIEREM VISFDGSYVNYRH
Sbjct: 540 TDGTALLKVLSEQNVDQHRTYSNDICEIFEILGIEAVRKAIEREMHQVISFDGSYVNYRH 599
Query: 4156 LALLCDVMTAKGHLMAITRHGINRQEVGALMR 4251
LALLCDVMTAKGHLMAITRHGINRQEVGALMR
Sbjct: 600 LALLCDVMTAKGHLMAITRHGINRQEVGALMR 631
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit
[Welwitschia mirabilis]
Length = 1013
Score = 1055 bits (2728), Expect = 0.0
Identities = 539/1021 (52%), Positives = 708/1021 (68%), Gaps = 17/1021 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HLELAKP+FHIGF+ L ILRCVCF C R+L D+ R + LK N K RL I D
Sbjct: 1 HLELAKPMFHIGFMKTVLSILRCVCFNCSRILADEEDHRFKQALKIK--NPKHRLEKILD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK---KN 594
CK K+ CEG GGCG QP G+ I AE+K K
Sbjct: 59 CCKNKTKCEGGDVIEDDQGQDVDEEVKKKPH--GGCGSQQPKITIDGMKIIAEYKAPRKK 116
Query: 595 VNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
+E Q ERK L+AERVL + ++I+DE+ ++G +P++ARP+WMI
Sbjct: 117 ADEQEQLMPEPVERKQQLSAERVLNILKRISDEECQMLGFNPKYARPDWMILQVLPIPPP 176
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
+ +++DDLTH+L+ II+ N+ L++ E NGA AH++T+ +LLQFHVAT
Sbjct: 177 PVRPSVMMNSTTRSEDDLTHQLAMIIRHNENLKKQEKNGAPAHIVTEFAQLLQFHVATYF 236
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DPN+ ID +
Sbjct: 237 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDEL 296
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRA 1275
GVP +IA NLT+PEIVTP+N+++L+ELV G PG +++G R+DLRY R+
Sbjct: 297 GVPWSIALNLTYPEIVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRS 356
Query: 1276 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
+D HL+ GY+VERH+ DGD+++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSVTSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDLVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TK D F
Sbjct: 417 FDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKGDTFT 476
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
+ M++LM+ ++GK+P PAILKP+P+WTGKQVF+LIIP +N++R + H +SE
Sbjct: 477 EKDVFMNILMWWEEFEGKIPNPAILKPRPIWTGKQVFNLIIPKQINLIRYSAWHNESEKG 536
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
P +PGDT V IE GE+LSG +C KT+G S+G+L+HV+ E+G + A F H Q +
Sbjct: 537 FP----TPGDTVVRIEKGEVLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWL 592
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL+++G +IGIGDTIAD AT I TI AK V +IEKA LE PG T+ +
Sbjct: 593 VNYWLLQQGFSIGIGDTIADAATMEKINETIANAKIKVQQLIEKAQEKKLEAEPGRTMME 652
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
+FEN+VNQ+LN ARD G+SAQKSLSE NN INISQ+ ACVGQQNVEG
Sbjct: 653 SFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIP+GF RTLPHF KDD GPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 713 KRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+KAME +MV YDGTVRNSL + Q YGEDG+D +W+E+Q + ++K
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVTQFLYGEDGMDAVWIESQKLDSLKMKKRE 832
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL-RKIFPRGD 2892
F+ ++ +L + + + +++ + ++ ++E LE DRR L +I P GD
Sbjct: 833 FDDVYKYELDQENWNPGYMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGD 892
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
LP NL+RLIWNAQK+FK+D RK ++ P+ +I + +L ++L +V GND +S +AQ
Sbjct: 893 NSWPLPVNLKRLIWNAQKLFKIDPRKASDMHPMEIIDAIDKLQERLKVVPGNDPLSIEAQ 952
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRST +K + + L EAFDW++GEIE+RF Q++ PGEM+G +AAQS
Sbjct: 953 KNATLFFNILLRSTFASKRVLKEYHLTKEAFDWVIGEIETRFLQSLVSPGEMIGCVAAQS 1012
Query: 3253 L 3255
+
Sbjct: 1013 I 1013
>gi|7521934|pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - Mastigamoeba invertens (fragment)
gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II largest
subunit [Mastigamoeba invertens]
Length = 1690
Score = 1054 bits (2726), Expect = 0.0
Identities = 612/1561 (39%), Positives = 904/1561 (57%), Gaps = 54/1561 (3%)
Frame = +1
Query: 226 CPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKR 405
CPGHFGH+ LAK V+H+ ++ ++L+CVC C RLL+D+ + N R
Sbjct: 1 CPGHFGHVTLAKAVYHLAYIRTVCRVLQCVCMNCSRLLVDRKISASTRL-----RNGAVR 55
Query: 406 LTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEW 585
L + +C C A GCG QP +R + I
Sbjct: 56 LNEVSKMCLQYKTCGECAVKTENAQVTRT-----------GCGARQPLWRVSKLSITRVP 104
Query: 586 KKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXX 765
+ + + E + +E V+ + + I+DED ++IG++P+FARPEWM+ T
Sbjct: 105 RDSSGGELPE---VQDSEEVVRILKNISDEDCVLIGLNPRFARPEWMMITLLPVPPMTVR 161
Query: 766 XXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNC 945
+ +DDLT +LS I+K N Q+++ + +GAA + D + +LQ +VA DN
Sbjct: 162 PSIAFGSVGRAEDDLTKQLSTIVKNNAQIRKLKLDGAAPINIQDTLDVLQINVACFFDNS 221
Query: 946 IPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVP 1125
+P L A + G RP+KS+ +RL+GKEGR+RG LMGKRVDFSAR+VIT DP L ++ +GVP
Sbjct: 222 VPSLEKA-KNGNRPIKSLSERLRGKEGRVRGQLMGKRVDFSARSVITPDPTLALNELGVP 280
Query: 1126 RTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQ 1293
RT+A NLT PE+V+P N+ +L LV G YPGAK ++GAR+ L D+ +
Sbjct: 281 RTVASNLTVPEMVSPLNIHRLAALVRNGPGTYPGAKYVIRDDGARIALTSR---GDMPIV 337
Query: 1294 PGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEM 1473
PGY +ERH+ DGD +VFNRQP+LHKMSMMGH+V++LP+S+FR+NLSVT+PYNADFDGDEM
Sbjct: 338 PGYIIERHLMDGDHVVFNRQPSLHKMSMMGHQVRVLPYSSFRLNLSVTTPYNADFDGDEM 397
Query: 1474 NLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMM 1653
N+H+P SLE +E++ + VP Q++TPQ N P MG+VQD+L ++++RD F+ MM
Sbjct: 398 NMHVPNSLEAISEVKNLMAVPFQIVTPQKNSPCMGVVQDSLLGCSLISRRDTFLTEDVMM 457
Query: 1654 DLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI 1833
+L + + K+PQPAIL+PKPLWTGKQ FS+++P +++ + ++E S +
Sbjct: 458 NLALVISYDPDKIPQPAILRPKPLWTGKQAFSMLLPKDLSYKGKCGFYFNAEQSVSREVA 517
Query: 1834 SPG--------DTKVIIEHGELLSGIVCSKTVGKSA-GNLLHVVTLELGYEIAANFYSHI 1986
+ D+ V I+ G+L +G++ +K VGKS G+++H++ + G A +F S +
Sbjct: 518 AAQEEYMNSLLDSVVRIKKGQLHTGVITNKAVGKSGQGSIIHILWKDQGPMAARDFLSRV 577
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
Q + NA+++ G ++G DT+AD T ++ I AK++V I+ A L+ G +
Sbjct: 578 QLLTNAYILTRGFSVGTEDTLADPDTLQAVKAEIEGAKRNVKIHIDDARAGRLKVQAGRS 637
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
L ++FE K N+ L DA G + SL NNF +NI Q+ VGQQN
Sbjct: 638 LVESFEAKTNKSLQDALSNAGKKSLSSLKYDNNFKLMIESGSKGSEMNICQITGMVGQQN 697
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
VEGKRI FGF+ RTLPHF KDDY PE++GFVENSY++GL+P EFFFH MGGREGLIDTAV
Sbjct: 698 VEGKRIAFGFQRRTLPHFRKDDYEPEARGFVENSYVSGLSPQEFFFHMMGGREGLIDTAV 757
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPN 2706
KT+E+GYIQR+L+K+ME + V YD TVRN+ ++Q YGEDG+DG ENQ++P++ +
Sbjct: 758 KTSESGYIQRKLMKSMEDISVKYDTTVRNAAGMILQFAYGEDGIDGTAHENQDIPSLNAD 817
Query: 2707 NAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKI--- 2877
+A + + + D R +++ + + EI+ +VE E++QL DR +R I
Sbjct: 818 DAKMRKLYDWNTADWDQYRPDFAPETLDEIRRDARVAEVVEREFAQLMADRATVRAIKHA 877
Query: 2878 FPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSG---- 3045
D + LP ++ R+I A++ + + +LSP + + + L + + ++G
Sbjct: 878 TGARDDNVFLPVHVGRIIAKAKQHYHISETTRSDLSPADIYTTLDLLITRELNITGAAYA 937
Query: 3046 ----NDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIA 3213
D + ++ + A + I+LR+ L +K M K + + + +++GE+ +F +A+
Sbjct: 938 EGRRADPLGEEQRSTALTMFAIMLRAQLASKVMILKHHITLDCWGYIIGEVREKFGRALV 997
Query: 3214 QPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTV 3393
PGEMVGA+AAQS GEP TQMTLNTFH AGV KNVTLGVPRLKE+INV+ L+TP++++
Sbjct: 998 APGEMVGAIAAQSFGEPTTQMTLNTFHSAGVGTKNVTLGVPRLKELINVNMALRTPNISI 1057
Query: 3394 FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDP-------------DPKNTVIAE 3534
F+ E A V ++HTT++ + I YDP D TV+ E
Sbjct: 1058 FVQDPFCNSEENATKVPLHIKHTTVRDLVSRAEIIYDPMYVVDQMTGEAYFDCTRTVVPE 1117
Query: 3535 DEEWVSIFYEMPD---HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHT 3705
DE +V Y D + S ++LR+ LD K M +L E + + F + V
Sbjct: 1118 DEFFVQDNYMQADRLNYQTHSYSSFVLRVMLDTKVMQQMELKEESVVSIVKAEFEDAVEI 1177
Query: 3706 IYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKV 3885
I T ++ K R+R+ E + EA+ + +D LR +E ++ L + GI ++KV
Sbjct: 1178 ISTVNDLNKPRMRIRLVRE-RAEAEAAVDEDRGEDDRLRDME-EIIMGLHVHGIRGMTKV 1235
Query: 3886 YMNQPNTDDKKRIIITPEGGFKSVADWILETD-----GTALLRVLSERQIDPVRTTSNDI 4050
++ T+ + G ++ W L+ + LL V+ +DP RTT+N I
Sbjct: 1236 MVDDSRTEK----WVDERGALQTRRFWPLDGEVKKDTAPPLLDVMVHPAVDPYRTTTNSI 1291
Query: 4051 CEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 4230
I +VLG+EA R A+ +E+ +V+ FDGSY+N RHL +L DVMT +G+LM+ITR G+NR
Sbjct: 1292 TVINDVLGVEAARAALLKELRDVLGFDGSYINIRHLLMLVDVMTFRGYLMSITRFGMNRT 1351
Query: 4231 EVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK- 4407
+ G LMR SFEETVD+L +AA A D ++GVS+NIMLGQ+A GTG FDL+LD +
Sbjct: 1352 DNGILMRASFEETVDVLQDAAQFAGHDELRGVSDNIMLGQVAPVGTGTFDLLLDAALLRE 1411
Query: 4408 -YGMEIPQNVVMGGGFYGSFAGSPSNREFSPAH--SPWNSGVTPTYAGAAWSPTTGGMSP 4578
Y G SP + +S +H SP + TY G +SP+ MSP
Sbjct: 1412 AYQFRTTTESDARGAIISPVGSSPQHTPYS-SHMLSPQAQAIDNTY-GLMFSPSV-TMSP 1468
Query: 4579 GAGFSPAGNTDGGASPFNEG----GWSPASPGDPLGA-LSPRTPSYGGMSPGVYSPSSPQ 4743
GF G P G+ P PG P A SP +P+Y SP YSP+SP
Sbjct: 1469 SGGFGMGMGMGMGDIPVPSSPGPFGYIPV-PGSPAAAGYSPASPAYSPASP-AYSPASPA 1526
Query: 4744 F 4746
+
Sbjct: 1527 Y 1527
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus
nigra]
Length = 1013
Score = 1054 bits (2725), Expect = 0.0
Identities = 537/1021 (52%), Positives = 710/1021 (68%), Gaps = 17/1021 (1%)
Frame = +1
Query: 244 HLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYD 423
HL LAKP++HIGFL L ILRCVCF C R+L D+ R + LK N K RL + D
Sbjct: 1 HLXLAKPMYHIGFLKTVLSILRCVCFNCSRILADEDDHRFKQALKVK--NPKHRLKKVLD 58
Query: 424 LCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWK---KN 594
CK K+ CEG GGCG QP G+ I AE+K K
Sbjct: 59 CCKNKTKCEGGDVIDEDQGQDGDEEVKKKRH--GGCGAQQPKITIDGMKIIAEYKAPRKK 116
Query: 595 VNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
+E Q ERK L+AERVL V ++ITDE+ ++G++P++ARP+WMI
Sbjct: 117 ADEQEQLMPEPAERKQQLSAERVLNVLKRITDEECQMLGLNPKYARPDWMILQVLPVPPP 176
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
+++++DDLTH+L+ II+ N+ L++ E NGA AH++T+ +LLQFH+AT
Sbjct: 177 PVRPSVMMDTTSRSEDDLTHQLAMIIRHNENLKKQEKNGAPAHIITEFAQLLQFHIATYF 236
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DPN+ ID +
Sbjct: 237 DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQL 296
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGARVDLRYHPRA 1275
GVP +IA NLT+PE VTP+N+++L+ELV G PG +E+G R+DLRY ++
Sbjct: 297 GVPWSIALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 1276 ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNAD 1455
+D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSVTSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 1456 FDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFI 1635
FDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKRD FI
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 1636 DWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDS 1815
+ M++LM+ +DGK+P P I KP+P+WTGKQVF+LIIP +N++RT + H +SE
Sbjct: 477 EKDVFMNILMWWEDFDGKIPAPTIYKPRPIWTGKQVFNLIIPKQINLIRTSAWHSESESG 536
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
I+PGDT V IE GE++SG +C KT+G S+G+L+HV+ E+G + A F H Q +
Sbjct: 537 V----ITPGDTLVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWL 592
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL+++G +IGIGDTIAD AT I TI KAK +V +I+ A LE PG T+ +
Sbjct: 593 VNYWLLQQGFSIGIGDTIADAATMEVINETISKAKNEVKMLIKAAQEKQLEAEPGRTMME 652
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
+FEN+VNQ+LN ARD GSSAQKSLSE NN INISQ+ ACVGQQNVEG
Sbjct: 653 SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 712
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIP+GF RTLPHF KDD GPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 713 KRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 772
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + ++K
Sbjct: 773 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKE 832
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL-RKIFPRGD 2892
FE ++ +L + + V +++ + ++ ++E +LE DRR L +I P GD
Sbjct: 833 FENVYKYELDQENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGMEIAPSGD 892
Query: 2893 AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQ 3072
LP NL+RLIWN+QK FK+D R+P ++ P+ ++ + L ++L +V G+D +S +AQ
Sbjct: 893 NSWPLPVNLKRLIWNSQKTFKIDARRPSDMHPMEIVEAIDRLQERLKVVPGDDLMSIEAQ 952
Query: 3073 YNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQS 3252
NATL NILLRST +K + + L EAF+W++GEIESRF Q++ PGEM+G +AAQS
Sbjct: 953 KNATLFFNILLRSTFASKRVLKEYHLTREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQS 1012
Query: 3253 L 3255
+
Sbjct: 1013 I 1013
>gi|11261184|pir||T43260 RNA polymerase (EC 2.7.7.-) II - Trichomonas
vaginalis
gi|1143740|gb|AAB50025.1| RNA polymerase II [Trichomonas vaginalis]
Length = 1661
Score = 1052 bits (2721), Expect = 0.0
Identities = 629/1647 (38%), Positives = 915/1647 (55%), Gaps = 79/1647 (4%)
Frame = +1
Query: 40 IVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNL 219
+V + FG+ PE+I+ + ++ + G+ GGL D R G R C TC N
Sbjct: 13 LVGSIDFGLFDPEKIEMFGACEITENQMMDKGEYVKGGLSDLRMGTQTRERLCDTCGRNQ 72
Query: 220 TDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSK 399
DCPGHFG++ LA+P FH+GFL K+L+ VC CGR+L S P + I+ T K
Sbjct: 73 EDCPGHFGYIRLAEPFFHVGFLPHCYKLLQMVCHKCGRVLCSYSDPEIQYIV--THYKGK 130
Query: 400 KRLTMIYDLCKAKS-VCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV----- 561
R +++ +KS C+ + V G ++
Sbjct: 131 NRFLKLFEKIASKSGKCQHSPDLKNPNEPDVCLDERFWELVNGDSHSEHVRVKKPCNAAV 190
Query: 562 -GIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
I+ ++ + + ++ + L+AE VL +F+ I+D+D+ ++G +P+ + P+WMI
Sbjct: 191 PAIEQGKDFLIKLKDVSKTEEDYLSAEVVLRIFENISDQDVRLLGFNPKRSHPKWMILKI 250
Query: 739 XXXXXXXXXXXXXTFG-SAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQ 915
+ G SA +QDD+THKLSDII N++L+ + + + + LLQ
Sbjct: 251 LPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSESSTDTAMKETRTLLQ 310
Query: 916 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 1095
+H+ T + N P + A K GRPLK I QRLKGKEG +RG+L GKR D+SAR+VI+ D
Sbjct: 311 YHITTYMINDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGKRDDYSARSVISPDT 370
Query: 1096 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRY 1263
++ ID VGVP +A+ LTFPE+VTP N L+ +V +G GA ++G R DL
Sbjct: 371 SISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVINDHGTRTDLSC 430
Query: 1264 HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+ + L PGY VERH++D DI++FNRQP+LHKMSMMGHR I+ TFR+N T+P
Sbjct: 431 CTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNPCDTTP 490
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLH+PQS R E+ I VP+Q+I+PQANKPV+G+VQD L R+++KR
Sbjct: 491 YNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKR 550
Query: 1624 DVFIDWPFMMDLLMYLPTW-DGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
D F+ +M+L+M+LPT D +P P ILKP LW+GKQVFSL +P +H+++
Sbjct: 551 DTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWSGKQVFSLFLPKI-----SHNSYS 605
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
+ I D VII G LL+GI+ KTV +S G+L+HVV IA +F +
Sbjct: 606 QDANKMDQNSIPLADRHVIIRDGNLLAGILGKKTVARSEGSLIHVVINSYNTNIAKDFLN 665
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
Q ++N WL G +IG+ D + ++++ I + V I KA + LE PG
Sbjct: 666 QTQLIVNNWLEHRGFSIGLIDCVVPDFVLQEVKHEIDDVESKVQATIIKAQDGQLERMPG 725
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
+ Q+FE +VN + N+ +T + N+ N+SQ+I VGQ
Sbjct: 726 MSYMQSFETEVNNLTNEILSKTYKVINAKIRGDNSLSEMLSAGSKGADTNMSQIIGVVGQ 785
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QN+EGKR+ FGF RTLPHF K +YG +GF +NSY+AGLTP EF FHAMGGR G+IDT
Sbjct: 786 QNMEGKRVKFGFNGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGIIDT 845
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMK 2700
A KT++TGYIQRRL+K+MES V YDGTVRNS ++VQ YG DGLD +E Q + +
Sbjct: 846 ACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQRLALVT 905
Query: 2701 PNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK-I 2877
N+ F + + + D F + + V+ E ++ + ++ E ++L E R +L+K I
Sbjct: 906 LNDEDFMKKYHLATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKEEENRLREYREILQKEI 965
Query: 2878 FPRGDAKIVLPCNLQRLIWNAQKIFKVDLR-KPVNLSPLHVISGVRELSKKLIIVSGNDE 3054
FP G +V+P N+ R+I ++Q+ F +++ +L+PL +IS V E LI+V GND
Sbjct: 966 FPNGSNTVVVPVNIARIIESSQRQFDINVHVSKSDLNPLDIISRVDECVNSLIVVKGNDN 1025
Query: 3055 ISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVG 3234
IS+ Q NATLL+ I+L S L K + +LN +AF ++LG I+ RF ++I PGEMVG
Sbjct: 1026 ISRTEQENATLLLRIMLYSHLSAKQCIFEYRLNEQAFKYILGSIKDRFYRSIVAPGEMVG 1085
Query: 3235 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAA 3414
+A QS+GEP+TQMTLNTFH+AG+SA +VTLGVPRL E++N++K ++TPS+TV A
Sbjct: 1086 TIAGQSIGEPSTQMTLNTFHFAGISAHDVTLGVPRLNELMNLAKHIRTPSVTVEFERDVA 1145
Query: 3415 KDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSI---FYEMPDHDLS 3585
KD E K V ++E + KK IYYDP+P+ T+I D +W++ + + D +L
Sbjct: 1146 KDEEIVKAVRAQIESASFKKFVIKAEIYYDPNPEETIIEPDTKWINTRIRYGGVEDRELQ 1205
Query: 3586 RTSPWLLRIELDRKRMVDKKL-TMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGE 3762
+PW+LR E++R+ M+ + ++ I +I G +G D + DD+A + + R+
Sbjct: 1206 DLAPWVLRFEINREEMIASNIESISDIVQKIKGMYG-DKFFVIGDDDARIIRMQARL--- 1261
Query: 3763 DKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPE- 3939
++EQ + D FLR E M TL+GIP IS+V +N +++ + PE
Sbjct: 1262 -----KDEQAEFAMDVKFLRETEQQMYKSFTLKGIPGISRVKINSA----AEKMFLNPET 1312
Query: 3940 GGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNV 4119
GF L T+GTA +LS +D V T +NDI ++ +VLGIEA R ++ EM +
Sbjct: 1313 HGFDKEKVSCLYTEGTAFREILSLDHVDTVHTITNDIYQVCDVLGIEAARHSLSYEMMLI 1372
Query: 4120 ISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVH 4299
+ G+ +N RHL LL D MT G L ++RHGIN+ G LMR S+E T D+ +AAV
Sbjct: 1373 MEKAGAALNRRHLDLLADTMTQYGVLYPVSRHGINKTPTGTLMRASYEMTNDVFFDAAVF 1432
Query: 4300 AEEDPVKGVSENIMLGQLARCGTGCFDL-----VLDVEKCKYGME--------------I 4422
+E D ++ VS NI+ G+ +R GTG ++ +L + K G E +
Sbjct: 1433 SEIDYMRDVSSNIIAGKPSRAGTGIVEVLINEDLLPMTKGNNGGEDLIGPATPSMMISPV 1492
Query: 4423 PQNVVMGGGFYGS---------FAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMS 4575
PQ V S SP + SP SP N G A SP G
Sbjct: 1493 PQGYVSQDNIVTSPFQDMLTNDIVQSPMS-PVSPIESPLNGGALSPMLMDAQSPYLYGAE 1551
Query: 4576 PGAG-----------FSPAGNTDGGASPFN----EGGWSPASPGDPLG------ALSPRT 4692
A P+ + G A N + +SP + PL ++SP +
Sbjct: 1552 NAASPIMTYKQNYSITMPSPSYQGNAQLLNTTITDHAYSPIAAASPLSPQAMGQSMSPLS 1611
Query: 4693 PSY----------GGMSPGVYSPSSPQ 4743
P+ GG Y+P SPQ
Sbjct: 1612 PAQQYDPTNFSPAGGFFNTRYNPLSPQ 1638
>gi|48869087|gb|AAT47141.1| RNA polymerase 2 [Prodontorhabditis
wirthi]
Length = 630
Score = 1046 bits (2705), Expect = 0.0
Identities = 518/630 (82%), Positives = 569/630 (90%), Gaps = 2/630 (0%)
Frame = +1
Query: 2338 QQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLID 2517
QQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLT +EFFFHAMGGREGLID
Sbjct: 1 QQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLID 60
Query: 2518 TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTM 2697
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRN++ QM+QLRYGEDGLDGMWVEN NMPTM
Sbjct: 61 TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAIGQMIQLRYGEDGLDGMWVENPNMPTM 120
Query: 2698 KPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKI 2877
KP NAVFER+F++DL D K L+K Y+EDVVR++ S + VE+EW+QLEEDR+LLRKI
Sbjct: 121 KPTNAVFEREFKLDLEDEKALKKYYTEDVVRDLVSSTEAFREVEAEWAQLEEDRQLLRKI 180
Query: 2878 FPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEI 3057
FP G+AKIVLPCNLQRLIWNAQKIF V++RKP L+P+ VI GVRELSKKLIIV+G D I
Sbjct: 181 FPTGNAKIVLPCNLQRLIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGEDRI 240
Query: 3058 SKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGA 3237
SKQAQYNATLL NIL+RSTLC+K M + KL+SEAFDWLLGEIE+RFQ AIAQPGEMVGA
Sbjct: 241 SKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGEIENRFQSAIAQPGEMVGA 300
Query: 3238 LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAK 3417
LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFL AK
Sbjct: 301 LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQEDVAK 360
Query: 3418 DPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSP 3597
D +K K+VLC+LEHTTL+KVT NTAIYYDPDP T IAEDEEWV IFYEMPDHD SR SP
Sbjct: 361 DRDKVKEVLCRLEHTTLRKVTANTAIYYDPDPTGTCIAEDEEWVPIFYEMPDHDPSRCSP 420
Query: 3598 WLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG--EDKG 3771
WLLRIELD++R+ DKKL++E IA++IH GFG+D++ IYTDDNAEKLV RLRIAG +DKG
Sbjct: 421 WLLRIELDKRRITDKKLSLEHIANKIHAGFGDDLNVIYTDDNAEKLVLRLRIAGGSDDKG 480
Query: 3772 EAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFK 3951
+ EEQVDKMEDD FLRCIEANMLSDL+L GIPAI KVYM++PNTDDKKR IT EGG K
Sbjct: 481 DVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKKRFXITREGGSK 540
Query: 3952 SVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFD 4131
++ADW+LETDGTALL+VLSER ID +RT+SNDICEIFEVLGIEAVRKAIEREM NVISFD
Sbjct: 541 AIADWLLETDGTALLKVLSERDIDQIRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFD 600
Query: 4132 GSYVNYRHLALLCDVMTAKGHLMAITRHGI 4221
GSYVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 601 GSYVNYRHLALLCDVMTAKGHLMAITRHGI 630
>gi|1778038|gb|AAB40622.1| RNA polymerase II large subunit
Length = 629
Score = 1033 bits (2670), Expect = 0.0
Identities = 505/629 (80%), Positives = 560/629 (88%)
Frame = +1
Query: 2365 PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETG 2544
PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETG
Sbjct: 1 PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTAETG 60
Query: 2545 YIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFER 2724
YIQRRLIKAMESVMVNYDGTVRNS+ QMVQLRYGEDGLDGMWVE Q MPTMKPNN++FE+
Sbjct: 61 YIQRRLIKAMESVMVNYDGTVRNSVGQMVQLRYGEDGLDGMWVEAQTMPTMKPNNSLFEK 120
Query: 2725 DFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIV 2904
F++DLTD + LR+ Y + VVRE+ S D + VESEW QLEEDRRLLRKIFP+GDAK+
Sbjct: 121 QFKLDLTDERDLRRIYXDSVVRELLGSADALREVESEWQQLEEDRRLLRKIFPKGDAKVH 180
Query: 2905 LPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNAT 3084
LPCNL+RLIWNA KIF VDL+KPV+L+PL V+ GVREL+KKL+IVSG D ISKQAQYNAT
Sbjct: 181 LPCNLKRLIWNAHKIFHVDLKKPVDLNPLRVVEGVRELNKKLVIVSGEDRISKQAQYNAT 240
Query: 3085 LLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEP 3264
LLMNILLRSTLC+K + KLN+EAF+W+LGEIE+RF QAIAQPGEMVGALAAQSLGEP
Sbjct: 241 LLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSLGEP 300
Query: 3265 ATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVL 3444
ATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK KTPSLT+FL G AAKD E+AKDVL
Sbjct: 301 ATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTIFLQGQAAKDAERAKDVL 360
Query: 3445 CKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDR 3624
CKLEH TL+KVT NTA YYDPDPKNT I ED+EWV IFYEMPD D + SPWLLR+ELDR
Sbjct: 361 CKLEHCTLRKVTANTADYYDPDPKNTCIEEDQEWVQIFYEMPDFDPANASPWLLRLELDR 420
Query: 3625 KRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKME 3804
KRM DKKLTME IA++IH GFG D+H IYTDDNA+KLVF +R+ + EEQ+DKME
Sbjct: 421 KRMTDKKLTMEAIAEKIHKGFGEDLHVIYTDDNADKLVFHIRLTNSTTDKESEEQIDKME 480
Query: 3805 DDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDG 3984
DD FL+CIE+NMLSDLTLQGI AISKVYM++P TDDKKR+ +T +G F+ V++W+LETDG
Sbjct: 481 DDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKKRVEVTQDGSFRMVSEWMLETDG 540
Query: 3985 TALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLAL 4164
TALLRVLSE +DP+RT SNDICEIFEVLGIEAVRKAIEREM+ VISFDGSYVNYRHLAL
Sbjct: 541 TALLRVLSEPNVDPIRTYSNDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNYRHLAL 600
Query: 4165 LCDVMTAKGHLMAITRHGINRQEVGALMR 4251
LCDVMTAKGHLMAITRHGINRQEVGALMR
Sbjct: 601 LCDVMTAKGHLMAITRHGINRQEVGALMR 629
>gi|1916663|gb|AAB51211.1| large subunit RNA polymerase II
[Mesorhabditis sp.]
Length = 633
Score = 1030 bits (2662), Expect = 0.0
Identities = 510/633 (80%), Positives = 565/633 (88%), Gaps = 1/633 (0%)
Frame = +1
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTA
Sbjct: 1 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPAEFFFHAMGGREGLIDTAVKTA 60
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRLIKAMESVMVNYDGTVRNS+AQMVQLRYGEDGLDG WVE Q M TMK ++
Sbjct: 61 ETGYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLDGTWVEGQVMATMKLPHSA 120
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDA 2895
FE+ F++DL+D K L+K Y+ED++R++ S + E EW +LE+DRRLLRKIFP+GD
Sbjct: 121 FEKQFKLDLSDIKALQKVYNEDIIRDLTGSTVALKEAEEEWERLEDDRRLLRKIFPKGDK 180
Query: 2896 KIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQY 3075
K+VLPCNLQRLIWNAQKIFKV+ RKP NLSPL VI GVRELSKKLIIVSG+D IS+QAQY
Sbjct: 181 KVVLPCNLQRLIWNAQKIFKVETRKPTNLSPLRVIEGVRELSKKLIIVSGDDRISQQAQY 240
Query: 3076 NATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSL 3255
NATLLMNILLRSTLC+K M K +LN E F+WLLGEIE RFQQAIAQPGEMVGALAAQSL
Sbjct: 241 NATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQPGEMVGALAAQSL 300
Query: 3256 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAK 3435
GEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVSK+ KTPSLTVFLTGAA KD EKAK
Sbjct: 301 GEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGAARKDAEKAK 360
Query: 3436 DVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIE 3615
DVLCKLEHTTL+KVT NTAIYYDPDPKNTVI EDEEWV++FYEMPD D SR SPWLLRIE
Sbjct: 361 DVLCKLEHTTLRKVTANTAIYYDPDPKNTVIEEDEEWVAMFYEMPDFDPSRCSPWLLRIE 420
Query: 3616 LDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQ-EEQV 3792
LDRKRM+DKKL+ME I++RI FG ++ IYTDDNA+ LVFR+RI +D+ + EEQV
Sbjct: 421 LDRKRMIDKKLSMEAISERIQQSFGETLNVIYTDDNADNLVFRIRIVADDQDKGDTEEQV 480
Query: 3793 DKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWIL 3972
D+MEDD FLR +E NMLSDLTLQGI I+KVYM++P TDDKKRI+ITPE GFK++ +W+L
Sbjct: 481 DRMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPTTDDKKRIVITPEAGFKAIPEWLL 540
Query: 3973 ETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYR 4152
ETDGTALL+VLS+ +DP+RTTSNDICEIFEVLGIEAVRKAIEREM VISFDGSYVNYR
Sbjct: 541 ETDGTALLQVLSQPNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNYR 600
Query: 4153 HLALLCDVMTAKGHLMAITRHGINRQEVGALMR 4251
HLALLCDVMTAKGHLMAITRHGINRQEVGALMR
Sbjct: 601 HLALLCDVMTAKGHLMAITRHGINRQEVGALMR 633
>gi|21280521|gb|AAM45153.1| RNA polymerase II largest subunit
[Cercomonas ATCC50319]
Length = 1014
Score = 1011 bits (2615), Expect = 0.0
Identities = 525/1027 (51%), Positives = 698/1027 (67%), Gaps = 9/1027 (0%)
Frame = +1
Query: 226 CPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKR 405
CPGHFGHLELAKPV H+ FL LK+LRCVC++C L + + R LE + N KKR
Sbjct: 1 CPGHFGHLELAKPVIHVSFLPTILKLLRCVCYHCSALXVSRDNRRFLEAARVK--NPKKR 58
Query: 406 LTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEW 585
L + ++C+ C G GCG P+YRR GI I E+
Sbjct: 59 LNAMLEVCRTAKDCGGGLELDPVDGERPAEEKKKRT----GCGSTLPTYRRDGIKIIVEF 114
Query: 586 KKNVN-ED--TQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXX 756
N ED + +RK L+ +++ ++F+ ITDED+ +G+DP A P W + T
Sbjct: 115 PANTEFEDAGSVDRKKNLSPQKIYDIFRNITDEDMTALGLDPVNAHPSWFLLTVLPVPPP 174
Query: 757 XXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLV 936
S + DDLT+KL DI+K N+QL++ EA GAA H+L D LLQF VATL
Sbjct: 175 PVRPSVMLDASTRASDDLTYKLGDIVKHNEQLKKQEAQGAAEHILQDTHDLLQFSVATLF 234
Query: 937 DNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTV 1116
D I GLP + + R +RL GK GRIRGNLMGKRVDFSARTVIT DPNL +D V
Sbjct: 235 DXEISGLPRSDNEVVRLSNQFVKRLVGKGGRIRGNLMGKRVDFSARTVITGDPNLSVDQV 294
Query: 1117 GVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADL 1284
GVPR+IA LTFPE+VT FN+ +++ LV G +PGA+ ++G R+DLR+ +++D
Sbjct: 295 GVPRSIAMTLTFPEMVTRFNIAQMRRLVANGPNVHPGARTIIRDDGKRIDLRFVKKSSDQ 354
Query: 1285 HLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDG 1464
HL+ GYR+ERH+ DGD+I+FNRQP+LHKMS+M H+++++PWSTFR+NLS T+PYNADFDG
Sbjct: 355 HLEVGYRIERHIHDGDVILFNRQPSLHKMSIMAHKIRVMPWSTFRLNLSCTTPYNADFDG 414
Query: 1465 DEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWP 1644
DEMNLH+PQS+ TRAE EI + PRQ+++PQANKPV+GIVQDTL T RD F+D
Sbjct: 415 DEMNLHVPQSMMTRAEALEIMLCPRQIVSPQANKPVIGIVQDTLLGCMKFTYRDNFLDKA 474
Query: 1645 FMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPY 1824
+ ++LM+L WDG VP P ILKP PLW+GKQ+FSLIIP VN+ R + HPDSE +
Sbjct: 475 MVFNILMHLENWDGTVPIPCILKPVPLWSGKQIFSLIIP-RVNMERKANGHPDSE----H 529
Query: 1825 KWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINA 2004
+S DT+V IE G+LL G+V +TVG + G+L+HV+ E G+E F + Q V+N
Sbjct: 530 TVMSVNDTRVRIEQGQLLMGVVDKQTVGNTPGSLIHVIWNECGFEATRQFLAECQKVVNY 589
Query: 2005 WLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFE 2184
+L+ G ++GIGDTIA +T I++TI++AK++V+++I+KA + +L+ PG+T ++FE
Sbjct: 590 FLMHYGFSVGIGDTIAPPSTLEKIESTIKQAKKEVLNLIKKAXSGNLDRQPGSTNLESFE 649
Query: 2185 NKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRI 2364
N+VN +LN A D G S + L++ NN INI Q+IACVGQQNV GKRI
Sbjct: 650 NQVNGVLNKAADDAGKSVKAQLTKMNNINAMVSAGSKGNAINICQIIACVGQQNVSGKRI 709
Query: 2365 PFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETG 2544
PFGF RTLPHF K D PESKGFV NSYL GLTP EFFFHAMGGREGLIDTAVKTAETG
Sbjct: 710 PFGFHGRTLPHFNKGDLSPESKGFVSNSYLQGLTPQEFFFHAMGGREGLIDTAVKTAETG 769
Query: 2545 YIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFER 2724
YIQRRL+KAME VM+ YD TVRNSL ++Q YGEDG+DG+++E Q + ++K +NA F +
Sbjct: 770 YIQRRLVKAMEDVMIKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMDNARFLK 829
Query: 2725 DFRMDLTDNKFLRKNYSEDVVRE-IQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAK 2898
+++D++ + L ++ + VRE + + + +E+E QL +DR+LLR KI P G+
Sbjct: 830 TYQLDVSRPEQL--DFMDAEVREHLLRTPEAHDALETELKQLRDDRQLLRDKIQPTGEDM 887
Query: 2899 IVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYN 3078
+ LP NL+RLIWNAQK F VD N+ P VI+ V+ L+++LI+V G D +S QAQ N
Sbjct: 888 VHLPVNLKRLIWNAQKRFHVDRFSKSNIEPQQVIADVKSLAERLIVVRGTDPLSLQAQTN 947
Query: 3079 ATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLG 3258
AT L I+LRS L K + +LN +AF WL+GEIE+RF QAI PGE+VG++AAQ++G
Sbjct: 948 ATTLFKIMLRSVLSAKRVLKDYRLNRDAFSWLIGEIEARFNQAIVHPGEVVGSIAAQAIG 1007
Query: 3259 EPATQMT 3279
EPATQMT
Sbjct: 1008 EPATQMT 1014
>gi|31127038|gb|AAF26658.2| RNA polymerase II largest subunit
[Speleonectes tulumensis]
Length = 636
Score = 1010 bits (2611), Expect = 0.0
Identities = 480/636 (75%), Positives = 559/636 (87%), Gaps = 4/636 (0%)
Frame = +1
Query: 1030 IRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRG 1209
IRGNLMGKRVDFSARTVIT DPNL ID VGVPR++AQNLTFPEIVTPFN+DK+QELV RG
Sbjct: 1 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMQELVRRG 60
Query: 1210 DTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSM 1377
+ QYPGAK +NG R+DLRYHP+ +DLHLQ GY+VERH++DGD+++FNRQPTLHKMSM
Sbjct: 61 NAQYPGAKYIIRDNGERIDLRYHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSM 120
Query: 1378 MGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQ 1557
MGHRVK+LPWSTFRMNLSVT+PYNADFDGDEMNLH+PQS+ETRAEIE I + PRQ+ITPQ
Sbjct: 121 MGHRVKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIENIHVTPRQIITPQ 180
Query: 1558 ANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGK 1737
ANKPVMGIVQDTLCAVR MTKRDVF++ MM+LLM+LP WDGK+PQPAILKPKPLWTGK
Sbjct: 181 ANKPVMGIVQDTLCAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPQPAILKPKPLWTGK 240
Query: 1738 QVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSA 1917
Q+FSLIIPGNVN++RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SA
Sbjct: 241 QLFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGIMCKKTLGTSA 300
Query: 1918 GNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKA 2097
G+LLH+ LELG+E+ +FY +IQTVIN WL+ EGH+IGIGDTIAD TYLDIQNTI+KA
Sbjct: 301 GSLLHICMLELGHEVCGHFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLDIQNTIKKA 360
Query: 2098 KQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXX 2277
K+DV+DVI KAHND+LEPTPGNTLRQTFENKVN+ILNDARD+TG SA+KSL+E+NN
Sbjct: 361 KEDVIDVIHKAHNDELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAM 420
Query: 2278 XXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLA 2457
INISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLA
Sbjct: 421 VVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLA 480
Query: 2458 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQL 2637
GLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRNS+ Q++QL
Sbjct: 481 GLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQL 540
Query: 2638 RYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGI 2817
RYGEDGL G VE Q++PT+K +N FE+ ++ D T+ ++LR+ ++ED+++E+ S + I
Sbjct: 541 RYGEDGLCGETVEFQSLPTVKLSNKAFEKKYKFDATNERYLRRVFNEDIMKELMGSGEVI 600
Query: 2818 SLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQR 2925
S +E EW QL +DR LR IFP + K+VLPCNLQR
Sbjct: 601 SELEKEWEQLNKDRDTLRMIFPLAENKVVLPCNLQR 636
>gi|1916666|gb|AAB51212.1| large subunit RNA polymerase II
[Teratorhabditis palmarum]
Length = 631
Score = 1002 bits (2591), Expect = 0.0
Identities = 496/632 (78%), Positives = 558/632 (87%)
Frame = +1
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGFRHR+LPHFI+DDYGPESKGFVENSYLAGLT +EFFFHAMGGREGLIDTAVKTA
Sbjct: 1 KRIPFGFRHRSLPHFIQDDYGPESKGFVENSYLAGLTAAEFFFHAMGGREGLIDTAVKTA 60
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRLIKAMESVMVNYDGTVRNS++QMVQLRYGEDGLD +WVE Q MPTM+ N+V
Sbjct: 61 ETGYIQRRLIKAMESVMVNYDGTVRNSISQMVQLRYGEDGLDAVWVEGQTMPTMRLKNSV 120
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDA 2895
FE F++DLTD K LRK Y+E+VVR++ S + E EW QLEEDRRLLRKIFP+GD
Sbjct: 121 FEDLFKLDLTDEKTLRKLYTEEVVRDLLGSTVALKEAEEEWQQLEEDRRLLRKIFPKGDN 180
Query: 2896 KIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQY 3075
K+VLPCNLQRLIWNAQKIFK++ RK +LSP+ VI G+RELSKKL+IVSG D ISKQAQY
Sbjct: 181 KVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEGIRELSKKLVIVSGEDRISKQAQY 240
Query: 3076 NATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSL 3255
NATLLMNIL+RSTLC+K + + KLN+EAFDWLLGEIE RF+QAIAQPGEMVGALAAQSL
Sbjct: 241 NATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQPGEMVGALAAQSL 300
Query: 3256 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAK 3435
GEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVSK KTPSLT++LTGAAA+D E+AK
Sbjct: 301 GEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAARDAERAK 360
Query: 3436 DVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIE 3615
+V C+LEHTTL+KVT NTAIYYDPDP+NT+I EDEEWV+ +YEMPD S SPWLLRIE
Sbjct: 361 EVQCRLEHTTLRKVTSNTAIYYDPDPRNTIIQEDEEWVAFYYEMPDSLPSNVSPWLLRIE 420
Query: 3616 LDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVD 3795
LDRKRM DK+LTME IA RI GFG D+HTIYTDDNA+ LVFR+RI E+KG+ EE ++
Sbjct: 421 LDRKRMTDKRLTMEAIASRITQGFGYDLHTIYTDDNADSLVFRIRIRSENKGDT-EETIE 479
Query: 3796 KMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILE 3975
KMEDD+FLR +E L +LTLQGI ISKVYM++P TDDKKR +ITPEG F+S+A+W+LE
Sbjct: 480 KMEDDMFLRAVEQICLLELTLQGIEQISKVYMHKPTTDDKKRTVITPEGDFRSIAEWLLE 539
Query: 3976 TDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRH 4155
TDGT+LL VLS+ +DPVRT SNDICEIFEVLGIEAVRKAIEREM VISFDGSYVNYRH
Sbjct: 540 TDGTSLLDVLSQPNVDPVRTYSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNYRH 599
Query: 4156 LALLCDVMTAKGHLMAITRHGINRQEVGALMR 4251
LALLCDVMTAKGHLMAITRHGINRQEVGALMR
Sbjct: 600 LALLCDVMTAKGHLMAITRHGINRQEVGALMR 631
>gi|13310932|gb|AAF36438.2| RNA polymerase II largest subunit
[Leishmania donovani]
Length = 1665
Score = 998 bits (2579), Expect = 0.0
Identities = 614/1510 (40%), Positives = 857/1510 (56%), Gaps = 48/1510 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 204
Q PL+ V VQF + +IK + +E + YE+G+P GG+ D R G D C T
Sbjct: 11 QMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCET 70
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKT 384
C +CPGHFG++ELA+P+F+I L L+CVC YCG LL+D + P E+ K
Sbjct: 71 CGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPS--EMKKIA 128
Query: 385 GTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVG 564
RL M+ LC SVC+ + G GR R G
Sbjct: 129 HLQGLNRLRMVAKLCG--SVCKRSKDIQG----------------CEGKGRQPRIGRFAG 170
Query: 565 IDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXX 744
I + K +E+ + AE +V +++D D L++G DP+F P +I T
Sbjct: 171 IYPGLQIKVT----QEEQDYVWHAENARQVLDRVSDSDALIMGFDPRFCHPRDLILTVLP 226
Query: 745 XXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQFH 921
F SAK+ D+LTH++ I+K N QL++++ +G A V D R LLQ H
Sbjct: 227 IPPPQVRPAVA-FASAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAV--DRSRALLQEH 283
Query: 922 VATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 1101
VAT +N A + LKS+ +RLKGK GR+RGNLMG RVDFSARTVIT DPN+
Sbjct: 284 VATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGSRVDFSARTVITGDPNI 343
Query: 1102 PIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHP 1269
+D VGVP ++A LTFPE V N +L E V R T YP A + NG L
Sbjct: 344 DVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQR--TTYPSANYIIRPNGNVTKLALVK 401
Query: 1270 RAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYN 1449
+HL G VERH+ DGD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+PYN
Sbjct: 402 DRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYN 461
Query: 1450 ADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 1629
ADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T +D
Sbjct: 462 ADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDT 521
Query: 1630 FIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSE 1809
F+D F+ + ++L W+ +P PAILKP+PLWTGKQ+FSLI+P VN H P +
Sbjct: 522 FVDKYFIQSVALWLDLWE--LPIPAILKPRPLWTGKQIFSLILP-EVN----HPASPYDK 574
Query: 1810 DSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQ 1989
P+ D K++I+ G+LL G + VG + G+L+HV+ E G + A F + +Q
Sbjct: 575 PPFPHN-----DKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQ 629
Query: 1990 TVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTL 2169
+ + ++G+ DT+AD T ++ N + K +Q V + A+N L G +L
Sbjct: 630 RITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGQLTRKAGMSL 689
Query: 2170 RQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNV 2349
Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQNV
Sbjct: 690 LQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQNV 749
Query: 2350 EGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 2529
G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EF+FH M GREGLIDTAVK
Sbjct: 750 AGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLIDTAVK 809
Query: 2530 TAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE-NQNMPTMKPN 2706
T++TGY+QR+L+KA+E V +YDGTVRN+ +++QL YGEDGLDG +E NQ P
Sbjct: 810 TSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLAYGEDGLDGARIEGNQAFPIPHMT 869
Query: 2707 NAVFERDFRMDLTDNKFLRKN----YSEDVVRE-IQESEDGISLVESEWSQLEEDRRLLR 2871
N+ +R + D +N Y + VR+ + + V+ E+ QL +DR + R
Sbjct: 870 NSEMADKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKVQEEFEQLMKDRAMSR 929
Query: 2872 KIFPRGD---AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLH----VISGVRELSKKL 3030
+ D K+ LP N+ RLI NA + + K +S L+ VI+ VREL + L
Sbjct: 930 LVIDMEDKNKLKMNLPVNVARLIQNA----RTTMGKRSQVSNLNRITTVINRVRELQEDL 985
Query: 3031 IIV--------SGN--DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLG 3180
+ + SG + +S+Q A L I LR L +K + + KLN +AF++LL
Sbjct: 986 VQLFPSYHKDYSGRFANVLSQQRVERALTLFGIHLRQILGSKRVLKEYKLNDKAFEYLLK 1045
Query: 3181 EIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV 3360
EI +++Q+++ PGE++GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NV
Sbjct: 1046 EIRTKYQESLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNV 1105
Query: 3361 SKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDE 3540
SK + S+ V L K KA++ +E+ TL +T I YDPDP+NTV+AEDE
Sbjct: 1106 SKNQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPDPRNTVVAEDE 1164
Query: 3541 E---WVSIFY----EMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDV 3699
E W E PD + SP++ R+ LD DK+L M+ + I +D
Sbjct: 1165 EMIRWEQAVMNEEDEEPDAE-QPPSPFIARLILDNDLFNDKRLNMKDVKSAIRQ--VDDT 1221
Query: 3700 HTIYTD-DNAEKLVFRLR---IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 3867
+ + + +N + + RLR G D A + V A +L + +GI
Sbjct: 1222 YMVQANMENDGQRIVRLRPRKCTGADSVPALTKAV-------------AQLLQSVHHRGI 1268
Query: 3868 PAISKVYMNQPNTDDKKRIIITPE-GGFKSVADWILETDGTALLRVL-------SERQID 4023
P I K + + NT + PE GG K+ + W+++T+GTAL R+ + ID
Sbjct: 1269 PGIKKTLLKEGNT-----FRVDPETGGIKNESSWMVDTEGTALQRIFVGVVNNEGKNIID 1323
Query: 4024 PVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMA 4203
+T+SN I E+ VLGIEA R+ + E+ G +NYRH +L D M +G+LMA
Sbjct: 1324 FSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRGYLMA 1383
Query: 4204 ITRHGINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFD 4380
++R GINR E G LMRCSFEETV +LM AA E+DPV+GVS +++LG AR GTG FD
Sbjct: 1384 VSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQARIGTGLFD 1443
Query: 4381 LVLDVEKCKY 4410
L+LD+ K ++
Sbjct: 1444 LLLDMSKLQH 1453
>gi|31126986|gb|AAK11870.2| RNA polymerase II largest subunit [Abacion
magnum]
Length = 624
Score = 996 bits (2576), Expect = 0.0
Identities = 472/624 (75%), Positives = 554/624 (88%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID VGVPR+IAQNLTFPEIVTPFN+DK+QELV RG++QYPGAK
Sbjct: 1 SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPTLHKMSMMGH +++ PWST
Sbjct: 61 DNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVFPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVT+PYNADFDGDEMNLH+PQS+ETRAEIEE+A+VPRQ+ITPQ+N+PVMGIVQDT
Sbjct: 121 FRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVFI+ MM+LLM+LP WDGKVPQPAILKPKPLWTGKQ+FSLIIPGNVN
Sbjct: 181 LTAVRKMTKRDVFIEKEHMMNLLMFLPIWDGKVPQPAILKPKPLWTGKQLFSLIIPGNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
+RTHSTHPD ED PYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+V LELG
Sbjct: 241 CIRTHSTHPDDEDESPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVMLELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+E+A FY HIQTVIN WL+ EGHTIGIGDTIAD TY+DIQN+I+KAKQDV++VIEKAH
Sbjct: 301 WEVAGYFYWHIQTVINNWLLLEGHTIGIGDTIADPQTYVDIQNSIKKAKQDVIEVIEKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SAQKSLSEFNNF INI
Sbjct: 361 NDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKXSKINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEG+RIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAM
Sbjct: 421 SQVIACVGQQNVEGRRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMV YDGT+RNS+ Q++QLRYGEDGLDG V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSVCQLIQLRYGEDGLDGGAV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E QN+PT+KP++ VFE+ F+ D+T+ + LR+ ++ED+V+E+ S ++ +E EW L+
Sbjct: 541 EMQNLPTLKPSHKVFEKKFKFDVTNERHLRRVFNEDIVKELVGSAYAVAELEKEWEALKR 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR +LR+IFP+GD+K+VLP N+QR
Sbjct: 601 DRDILRQIFPKGDSKVVLPGNIQR 624
>gi|13183799|gb|AAK15346.1| RNA polymerase II largest subunit
[Leptomonas seymouri]
Length = 1657
Score = 976 bits (2522), Expect = 0.0
Identities = 620/1575 (39%), Positives = 870/1575 (54%), Gaps = 54/1575 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 204
Q PL+ V VQF + +IK + +E + YE+G+P GG+ D R G D C T
Sbjct: 11 QMPLQKVHDVQFEVFKERQIKAYATCRIEHAKSYEHGQPVRGGINDLRMGTTDFDYSCET 70
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKT 384
C +CPGHFG++ELA+P+F+I L L+CVC YCG LL+D + P E+ K T
Sbjct: 71 CGLKHPECPGHFGYIELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPT--EMKKIT 128
Query: 385 GTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVG 564
RL ++ LC SVC+ + G GR QP R+G
Sbjct: 129 HVQGLNRLRLVAKLCG--SVCKRSKDIQG----------------CEGKGR-QP---RIG 166
Query: 565 IDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXX 744
+ + +E+ + A+ +V +++D D ++G DP+F P +I T
Sbjct: 167 RFLGIYPGLQIKVTQEEQDYVWHADNARQVLDRVSDSDATIMGFDPRFCHPRDLILTVVP 226
Query: 745 XXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQFH 921
FGSAK+ D+LTH++ I+K QL++++ +G A V D R LLQ H
Sbjct: 227 IPPPQVRPAVA-FGSAKSDDELTHQIMSIVKREHQLRKDKESGVKAAV--DRSRALLQEH 283
Query: 922 VATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 1101
VAT +N A + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT DPN+
Sbjct: 284 VATFFNNASTFYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNI 343
Query: 1102 PIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHP 1269
+D VGVP +IA LTFPE V N +L E V R + YP A + NG L
Sbjct: 344 DVDEVGVPFSIAMTLTFPERVNVINKKRLTEFVQR--STYPSANYIMRPNGNVTKLALVK 401
Query: 1270 RAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYN 1449
+ +HL G VERH+ DGD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+PYN
Sbjct: 402 DRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYN 461
Query: 1450 ADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 1629
ADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T +D
Sbjct: 462 ADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDT 521
Query: 1630 FIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSE 1809
F+D F+ + ++L W+ +P PAILKP+PLWTGKQ+FSLI+P VN HP S
Sbjct: 522 FVDKYFIQSVALWLDLWE--LPIPAILKPRPLWTGKQIFSLILP-EVN-------HPAS- 570
Query: 1810 DSGPY-KWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHI 1986
PY K P + K II+ G LL G + VG + G+L+HV+ E G + A F + +
Sbjct: 571 ---PYGKPPFPHNDKKIIQRGLLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGV 627
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
Q + + ++G+ DT+AD +T ++ N + K +Q V + A+N L G +
Sbjct: 628 QRITTYFNYCFAFSVGVQDTVADASTLKEMNNVLHKTRQSVEKIGAAANNGKLTRKAGMS 687
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
L Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQN
Sbjct: 688 LLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQN 747
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
V G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EF+FH M GREGLIDTAV
Sbjct: 748 VAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLIDTAV 807
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE-NQNMPTMKP 2703
KT++TGY+QR+LIKA+E V YDGTVRN+ +++QL YGEDGLDG +E NQ P
Sbjct: 808 KTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQLAYGEDGLDGARIEGNQAFPIPHM 867
Query: 2704 NNAVFERDFRMDLTDNKFLRKN----YSEDVVRE-IQESEDGISLVESEWSQLEEDR--- 2859
N +R + + +N Y + VR+ + +S ++ E+ QL +DR
Sbjct: 868 ANNEMIDKYRYEYNEEGSFSENMGGSYMDPFVRDSLLRDPQSVSKLQEEFDQLVKDRDMS 927
Query: 2860 RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIV 3039
RL+ + + K+ LP N+ RLI NA + NL+P+ VI VR+ K L+ +
Sbjct: 928 RLIIDMEEKNKLKMNLPVNVARLIQNATTTMG-QAHQVSNLNPITVIQRVRDCRKTLVQL 986
Query: 3040 --------SGN--DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIE 3189
SG + +S+Q A L +I LR L +K + + KLN +AF++LL EI
Sbjct: 987 FPSYHKDYSGRFLNVLSQQRVKRALTLFDIHLRQILGSKRVLKEYKLNDKAFEYLLKEIR 1046
Query: 3190 SRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKT 3369
+++QQ++ PGE++GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NVSK
Sbjct: 1047 TKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSKN 1106
Query: 3370 LKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDE--- 3540
+ S+ V LT + +KA++ +E+ TL +T P P NTV+ ED
Sbjct: 1107 QRNASVAVCLT-REYQQRQKAQEAQQYIEYCTLANITTTV-----PRPLNTVVVEDVNIL 1160
Query: 3541 EW-VSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTD 3717
EW ++ E D ++ SP++ R+ L+ + +K+L M+ + I + +
Sbjct: 1161 EWEQAVMNEDEGLDAAQPSPFIARLILNTELFNNKQLNMKDVKSAIQQMDDSYLMQANLK 1220
Query: 3718 DNAEKLVFRLR---IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVY 3888
+N V RLR AG D + V A +L + L GIP I K
Sbjct: 1221 NNIRHRVVRLRPRKCAGADSVPELTKAV-------------AQLLQSVHLLGIPGIKKTL 1267
Query: 3889 MNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL-------SERQIDPVRTTSND 4047
+ + T + + GG + W+++T+GTAL R+ +D +T+SN
Sbjct: 1268 LKEGTTFN----VDPATGGITKESSWMVDTEGTALQRIFVGVVNQHGVNIVDFAKTSSNK 1323
Query: 4048 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 4227
I EI VLGIEA R + E+ G +NYRH +L D M +G+LMA++R GINR
Sbjct: 1324 IPEIVTVLGIEAARPKLLFELCQAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTGINR 1383
Query: 4228 QEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKC 4404
E G LMRCSFEETV +LM AA E+DPV+GVS N+++G AR GTG FDL+LD+ C
Sbjct: 1384 SETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSANLVMGNQARIGTGLFDLMLDMGNC 1443
Query: 4405 KYGMEIPQ--------------NVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAG 4542
+ + + +VV G G PS S H + G+
Sbjct: 1444 SNVVPLDKADGGRTSNVYHTEASVVAGSSVQGLHGELPS----SAMHENSSVGI----GA 1495
Query: 4543 AAWSPTTGGMSPGAG 4587
++ P GG + GAG
Sbjct: 1496 SSVYPRHGGGAAGAG 1510
>gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leishmania
major]
Length = 1663
Score = 974 bits (2518), Expect = 0.0
Identities = 600/1508 (39%), Positives = 851/1508 (55%), Gaps = 46/1508 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRG-RCM 201
Q PL+ V VQF + +IK + +E + Y + + G C
Sbjct: 11 QMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYASTASRCGAASTTCAWARQTSSIACE 70
Query: 202 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 381
TC +CPGHFG++ELA+P+F+I L L+CVC YCG LL+D + P E+ K
Sbjct: 71 TCGLRHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPS--EMKKI 128
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
RL M+ LC SVC+ + + G G P+ R
Sbjct: 129 AHLQGLNRLRMVAKLCG--SVCKRSKD------------------IQGCEGXGPPAAHRP 168
Query: 562 GIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXX 741
+ I + V ++ Q+ + AE +V +++D D L++G D +F P + T
Sbjct: 169 FVGIYPGLQIKVTQEEQD--YVWHAENARQVLDRVSDSDALIMGFDRRFCHPRDLDLTVL 226
Query: 742 XXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQF 918
G DDLTH++ I+K N QL++++ +G A V D R LLQ
Sbjct: 227 PIPPPQVRSSIY-LGGLMQVDDLTHQIMSIVKRNIQLRKDKESGVKAAV--DRSRALLQE 283
Query: 919 HVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPN 1098
HVAT +N A + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT DPN
Sbjct: 284 HVATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPN 343
Query: 1099 LPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYH 1266
+ +D VGVP ++A LTFPE V N +L E V R T YP A + NG L
Sbjct: 344 IDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQR--TTYPSANYIIRPNGNVTKLALV 401
Query: 1267 PRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPY 1446
+ +HL G VERH+ DGD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+PY
Sbjct: 402 KDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPY 461
Query: 1447 NADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRD 1626
NADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD++ +T++D
Sbjct: 462 NADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSVLGSYKLTEKD 521
Query: 1627 VFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDS 1806
F+D F+ + ++L W ++P P ILKP+PLWTGKQ+FSLI+P VN H P
Sbjct: 522 TFLDKYFIAERPLWLDLW--QLPIPTILKPRPLWTGKQIFSLILP-EVN----HPASPHD 574
Query: 1807 EDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHI 1986
+ P+ D+K++I+ G+LL G + VG + G+L+HV+ E G + A F + +
Sbjct: 575 KPPFPHN-----DSKIMIQRGQLLGGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGV 629
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
Q + + ++G+ DT+AD T ++ N + K +Q V + A+N L G +
Sbjct: 630 QRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKLTRKAGMS 689
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
L Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQN
Sbjct: 690 LLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVGQQN 749
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
V G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EF+FH M GREGLIDTAV
Sbjct: 750 VAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLIDTAV 809
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE-NQNMPTMKP 2703
KT++TGY+QR+L+KA+E V +YDGTVRN+ +++QL YGEDGLDG +E NQ P
Sbjct: 810 KTSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLAYGEDGLDGARIEGNQAFPIPHM 869
Query: 2704 NNAVFERDFRMDLTDNKFLRKN----YSEDVVRE-IQESEDGISLVESEWSQLEEDRRLL 2868
N+ +R + D +N Y + VR+ + + ++ E+ QL +DR +
Sbjct: 870 TNSEMADKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKLQEEFEQLMKDRAMS 929
Query: 2869 RKIFPRGD---AKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKLII 3036
R + D K+ LP N+ RLI NA+ + R V NL+P+ VI+ VREL + L+
Sbjct: 930 RLVIDMEDKNKLKMNLPVNVARLIQNART--TMGKRSQVSNLNPITVINRVRELQEDLVQ 987
Query: 3037 VSGN----------DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEI 3186
+ + + +S+Q A L I LR L +K + + KLN +AF++LL EI
Sbjct: 988 LFPSYHKDYNGRFVNVLSQQRVERALTLFGIHLRQILGSKRVLKEYKLNDKAFEYLLKEI 1047
Query: 3187 ESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK 3366
+++QQ++ PGE++GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NVSK
Sbjct: 1048 RTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSK 1107
Query: 3367 TLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 3546
+ S+ V L K KA++ +E+ TL +T I YDPDP+NTV+AEDEE
Sbjct: 1108 NQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPDPRNTVVAEDEEM 1166
Query: 3547 V-------SIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHT 3705
+ + E PD + SP++ R+ LD DK+L M+ + I +D +
Sbjct: 1167 IRWEQAVMNAEDEEPDAE-QPPSPFIARLILDNDLFNDKRLNMKDVKSAIRQ--VDDTYM 1223
Query: 3706 IYTD-DNAEKLVFRLR---IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPA 3873
+ + +N + + RLR G D A + V A +L + L+GIP
Sbjct: 1224 VQANMENDGQRIVRLRPRKCTGADSXPALTKAV-------------AQLLQSVHLRGIPG 1270
Query: 3874 ISKVYMNQPNTDDKKRIIITPE-GGFKSVADWILETDGTALLRVL-------SERQIDPV 4029
I K + + NT + PE GG K+ + W+++T+GTAL R+ + ID
Sbjct: 1271 IKKTLLKEGNT-----FRVDPEAGGIKNESSWMVDTEGTALQRIFVGVVNSEGKNIIDFS 1325
Query: 4030 RTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 4209
+T+SN I E+ VLGIEA R+ + E+ G +NYRH +L D M +G+LMA++
Sbjct: 1326 KTSSNKIPEVVTVLGIEAARRKMLSELREAYLAYGLNINYRHYTILVDTMCQRGYLMAVS 1385
Query: 4210 RHGINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV 4386
R GINR E G LMRCSFEETV +LM AA E+DPV+GVS +++LG AR GTG FDL+
Sbjct: 1386 RTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQARIGTGLFDLL 1445
Query: 4387 LDVEKCKY 4410
LD+ K ++
Sbjct: 1446 LDMSKLQH 1453
>gi|38232371|gb|AAR15021.1| RNA polymerase II largest subunit
[Scutigerella sp. Scu3]
Length = 624
Score = 974 bits (2518), Expect = 0.0
Identities = 465/624 (74%), Positives = 540/624 (86%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID VGVPR+IAQN+TFPEIVTPFN + L LV RG++QYPGAK
Sbjct: 1 SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFEXLXXLVXRGNSQYPGAKYIIR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
NG R DLR+HP+ +DLHLQ GY+VERH++DGD+IVFNRQPTLHKMSMMGH ++LPWST
Sbjct: 61 XNGERXDLRFHPKXSDLHLQIGYKVERHVRDGDVIVFNRQPTLHKMSMMGHHXRVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVT+PYNADFDGDEMNLH+PQS ETRAE+EE+A+VPRQ+ITPQ+N+PVMGIVQDT
Sbjct: 121 FRMNLSVTTPYNADFDGDEMNLHVPQSNETRAEVEELAIVPRQIITPQSNRPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF+D MM+LLM+LPTW+GKVPQP ILKPKP WTGKQ+FSLIIPGNVN
Sbjct: 181 LTAVRKMTKRDVFLDKDQMMNLLMFLPTWNGKVPQPCILKPKPQWTGKQIFSLIIPGNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
+RTHSTHPD ED GPYKWISPGDTKV++EHG+L+SGI+C KT+G SAG+LLH+V LELG
Sbjct: 241 CIRTHSTHPDEEDDGPYKWISPGDTKVLVEHGDLISGILCKKTLGTSAGSLLHIVVLELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+E A FY HIQTV+N WL+ EGH+IG+ DTIAD TY+DIQN+I+KAKQDV++VIEKAH
Sbjct: 301 FETAGYFYWHIQTVVNNWLLLEGHSIGMCDTIADPQTYVDIQNSIKKAKQDVIEVIEKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SAQKSLSEFNNF INI
Sbjct: 361 NDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKGSKINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGT RNS+ Q++QLRYGEDGLD V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTCRNSVCQLIQLRYGEDGLDANAV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q++PT+KP++ FE FR D+++ + LR+ ++ED V+E+ S +S +E EW L+
Sbjct: 541 EFQSLPTLKPSHKAFEXKFRFDVSNERXLRRXFTEDXVKELTGSAQALSDLEKEWEALQR 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LR IFP+GD+K+VLPCNLQR
Sbjct: 601 DREALRSIFPKGDSKVVLPCNLQR 624
>gi|22002086|gb|AAK97604.2| RNA polymerase II largest subunit
[Trypanosoma cruzi]
Length = 1731
Score = 974 bits (2517), Expect = 0.0
Identities = 622/1627 (38%), Positives = 897/1627 (54%), Gaps = 54/1627 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 204
Q L+ V VQF + ++IK +V VE + YE G+P GG+ D R G D C T
Sbjct: 11 QMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEFACET 70
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK- 381
C +CPGHFG+++LA+PVF+IG L++L+CVC CG LL+D + P+V + L+
Sbjct: 71 CHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKKLQHL 130
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
TG N RL + +C K VA GCG QP R+
Sbjct: 131 TGVN---RLRQVVKMCGMKC------------RMSTDATTPEEAVVARGCGATQP---RI 172
Query: 562 GIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXX 741
G + + +E+ ++ A+ +V +++DED V+G D P ++ T
Sbjct: 173 GRYLGIYPTLIIKATLEEQDMVWHADTARQVLDRVSDEDARVMGFDALRCHPRDLVLTVL 232
Query: 742 XXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQF 918
+FGS K+ D+LTH++ I+K N QL++++ + V D R LLQ
Sbjct: 233 PVPPPQVRPAI-SFGSLKSDDELTHQIMSIVKRNNQLRKDKESDV--QVAVDRSRALLQE 289
Query: 919 HVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPN 1098
HVA +N + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT DPN
Sbjct: 290 HVAAYFNNASMYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPN 349
Query: 1099 LPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYH 1266
+ +D VGVP +IA LTFPE V+ N +L E V R YP A NG L
Sbjct: 350 IDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRR--PVYPSANYIHHPNGTTTKLALR 407
Query: 1267 PRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPY 1446
+ + L G VERH+ +GD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+PY
Sbjct: 408 RDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPY 467
Query: 1447 NADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRD 1626
NADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T +D
Sbjct: 468 NADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKD 527
Query: 1627 VFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDS 1806
F+D F+ + ++L W ++P PA+LKP+PLWTGKQVFSLI+P VN H P
Sbjct: 528 TFLDKYFVQSVALWLDLW--QLPVPAVLKPRPLWTGKQVFSLILP-EVN----HPATPQE 580
Query: 1807 EDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHI 1986
P+ D+ ++I G+LL G + VG + G+L+HV+ E G + A F + +
Sbjct: 581 RPPFPHN-----DSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGV 635
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
Q + +LI G ++G+ DT+AD T + + K +++V + A+N L G T
Sbjct: 636 QRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAGMT 695
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
L Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQN
Sbjct: 696 LLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQN 755
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
V G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EFFFH M GREGLIDTAV
Sbjct: 756 VAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAV 815
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE-NQNMPTMKP 2703
KT++TGY+QR+LIKA+E V YDGTVRN+ +++Q YGEDGLDG +E Q P
Sbjct: 816 KTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQFMYGEDGLDGARIEGGQLFPLPFR 875
Query: 2704 NNAVFERDFRMDLTD----NKFLRKNYSEDVVREIQESE-DGISLVESEWSQLEEDRRLL 2868
+N E ++ + + N+ + Y + V+++ ++ + + ++SE+ QL DR
Sbjct: 876 DNKEMESTYKYEYDETGAFNEKVGGAYMDPHVKKMLRADPENVRKLQSEFDQLMADRDWA 935
Query: 2869 RKIF---PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKLII 3036
R++ R K+ LP N+ RLI NA+ + R V NLSP+ +I VR+L + ++
Sbjct: 936 RRMMDLEEREKLKLNLPVNIGRLIQNARS--TMGKRSQVSNLSPVTIIDHVRKLQEDMLK 993
Query: 3037 --------VSG--NDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEI 3186
V G ++ +S+Q NA L ++ LR L +K + + KLN +AF++LL EI
Sbjct: 994 LFPCYHKGVDGRIHNLLSRQRIENALTLFSVHLRQLLASKRVLREYKLNDKAFEYLLKEI 1053
Query: 3187 ESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK 3366
+++ Q++ PGE +GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NVS+
Sbjct: 1054 RTKYLQSLVSPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSR 1113
Query: 3367 TLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 3546
K S+ V L K A+ +E+ TL+ VT YDPDP+ TV+ D
Sbjct: 1114 HQKHASMNVSLYPPWDK-KRTAQQAQHLIEYCTLESVTKRIQFIYDPDPRETVVEADRAI 1172
Query: 3547 VSIFYEMPD--------HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRI-HGGFGNDV 3699
+ + + + D ++ SPW+ R+ELD VDK L M+ + I G +
Sbjct: 1173 LELEWSVMDESDERARLQEVENGSPWIARLELDADMFVDKALNMKDVKQAILRVDDGYVI 1232
Query: 3700 HTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAIS 3879
T +D E+ + R+R ++ D ++ L+ +L+ + L+GIP +
Sbjct: 1233 ETGMANDTKERTI-RMR----------PKKNDGVDSIPRLKHAIPELLARVHLRGIPGVR 1281
Query: 3880 KVYMNQPNTDDKKRIIITP-EGGFKSVADWILETDGTALLR----VLSERQ---IDPVRT 4035
K + D+ + P G W+++TDGTAL R ++ E+ I+ RT
Sbjct: 1282 KALLK-----DRTTFTVDPATGKMTGEKTWLIDTDGTALRRAFIGIVDEKGNNIINATRT 1336
Query: 4036 TSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 4215
+SN + E+ +LGIEA R + E+ G +NYRH +L D + +G+LMA++R
Sbjct: 1337 SSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRGYLMAVSRV 1396
Query: 4216 GINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLD 4392
GINR E+ G LMRCSFEETV +LM AA E DPV+GVS N++LG AR GTG FDLVL+
Sbjct: 1397 GINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQARIGTGLFDLVLN 1456
Query: 4393 VEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNS---GVTPTYAGAA--WSP 4557
+ + +PQ + G + ++ + P+ P+ + TP A+ +
Sbjct: 1457 MAALQ--QAVPQEDAVAPGKEVNVYHGLASTQNLPSSMPYRAKDHEATPFVNDASLFFRE 1514
Query: 4558 TTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPS----YGGM-SPGV 4722
GG S A + A GG + +S A P + R S Y M S V
Sbjct: 1515 GVGGSSSAAPLT-ASTLYGGMHEASAVHFSQAYPAMGMSDQRVRASSVSQPYSVMSSASV 1573
Query: 4723 YSPSSPQ 4743
Y+P+S Q
Sbjct: 1574 YNPASMQ 1580
>gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit
[Trypanosoma cruzi]
Length = 1731
Score = 973 bits (2516), Expect = 0.0
Identities = 622/1627 (38%), Positives = 897/1627 (54%), Gaps = 54/1627 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 204
Q L+ V VQF + ++IK +V VE + YE G+P GG+ D R G D C T
Sbjct: 11 QMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEFACET 70
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK- 381
C +CPGHFG+++LA+PVF+IG L++L+CVC CG LL+D + P+V + L+
Sbjct: 71 CHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKKLQHL 130
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
TG N RL + +C K VA GCG QP R+
Sbjct: 131 TGVN---RLRQVVKMCGMKC------------RMSTDATTPEEAVVARGCGATQP---RI 172
Query: 562 GIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXX 741
G + + +E+ ++ A+ +V +++DED V+G D P ++ T
Sbjct: 173 GRYLGIYPTLIIKATLEEQDMVWHADTARQVLDRVSDEDARVMGFDALRCHPRDLVLTVL 232
Query: 742 XXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQF 918
+FGS K+ D+LTH++ I+K N QL++++ + V D R LLQ
Sbjct: 233 PVPPPQVRPAI-SFGSLKSDDELTHQIMSIVKRNNQLRKDKESDV--QVAVDRSRALLQE 289
Query: 919 HVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPN 1098
HVA +N + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT DPN
Sbjct: 290 HVAAYFNNASMYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPN 349
Query: 1099 LPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYH 1266
+ +D VGVP +IA LTFPE V+ N +L E V R YP A NG L
Sbjct: 350 IDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRR--PVYPSAFYIHHPNGTSTKLALR 407
Query: 1267 PRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPY 1446
+ + L G VERH+ +GD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+PY
Sbjct: 408 RDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPY 467
Query: 1447 NADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRD 1626
NADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T +D
Sbjct: 468 NADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKD 527
Query: 1627 VFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDS 1806
F+D F+ + ++L W ++P PA+LKP+PLWTGKQVFSLI+P VN H P
Sbjct: 528 TFLDKYFVQSVALWLDLW--QLPVPAVLKPRPLWTGKQVFSLILP-EVN----HPATPQE 580
Query: 1807 EDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHI 1986
P+ D+ ++I G+LL G + VG + G+L+HV+ E G + A F + +
Sbjct: 581 RPPFPHN-----DSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGV 635
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
Q + +LI G ++G+ DT+AD T + + K +++V + A+N L G T
Sbjct: 636 QRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAGMT 695
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
L Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQN
Sbjct: 696 LLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQN 755
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
V G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EFFFH M GREGLIDTAV
Sbjct: 756 VAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAV 815
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE-NQNMPTMKP 2703
KT++TGY+QR+LIKA+E V YDGTVRN+ +++Q YGEDGLDG +E Q P
Sbjct: 816 KTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQFMYGEDGLDGARIEGGQLFPLPFR 875
Query: 2704 NNAVFERDFRMDLTD----NKFLRKNYSEDVVREIQESE-DGISLVESEWSQLEEDRRLL 2868
+N E ++ + + N+ + Y + V+++ ++ + + ++SE+ QL DR
Sbjct: 876 DNKEMESTYKYEYDETGAFNEKVGGAYMDPHVKKMLRADPENVRKLQSEFDQLMADRDWA 935
Query: 2869 RKIF---PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKLII 3036
R++ R K+ LP N+ RLI NA+ + R V NLSP+ +I VR+L + ++
Sbjct: 936 RRMMDLEEREKLKLNLPVNIGRLIQNARS--TMGKRSQVSNLSPVTIIDHVRKLQEDMLK 993
Query: 3037 --------VSG--NDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEI 3186
V G ++ +S+Q NA L ++ LR L +K + + KLN +AF++LL EI
Sbjct: 994 LFPCYHKGVDGRIHNLLSRQRIENALTLFSVHLRQLLASKRVLREYKLNDKAFEYLLKEI 1053
Query: 3187 ESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSK 3366
+++ Q++ PGE +GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NVS+
Sbjct: 1054 RTKYLQSLVSPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSR 1113
Query: 3367 TLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEW 3546
K S+ V L K A+ +E+ TL+ VT YDPDP+ TV+ D
Sbjct: 1114 HQKHASMNVSLYPPWDK-KRTAQQAQHLIEYCTLESVTKRIQFIYDPDPRETVVEADRAI 1172
Query: 3547 VSIFYEMPD--------HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRI-HGGFGNDV 3699
+ + + + D ++ SPW+ R+ELD VDK L M+ + I G +
Sbjct: 1173 LELEWSVMDESDERARLQEVENGSPWIARLELDADMFVDKALNMKDVKQAILRVDDGYVI 1232
Query: 3700 HTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAIS 3879
T +D E+ + R+R ++ D ++ L+ +L+ + L+GIP +
Sbjct: 1233 ETGMANDTKERTI-RMR----------PKKNDGVDSIPRLKHAIPELLARVHLRGIPGVR 1281
Query: 3880 KVYMNQPNTDDKKRIIITP-EGGFKSVADWILETDGTALLR----VLSERQ---IDPVRT 4035
K + D+ + P G W+++TDGTAL R ++ E+ I+ RT
Sbjct: 1282 KALLK-----DRTTFTVDPATGKMTGEKTWLIDTDGTALRRAFIGIVDEKGNNIINATRT 1336
Query: 4036 TSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 4215
+SN + E+ +LGIEA R + E+ G +NYRH +L D + +G+LMA++R
Sbjct: 1337 SSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRGYLMAVSRV 1396
Query: 4216 GINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLD 4392
GINR E+ G LMRCSFEETV +LM AA E DPV+GVS N++LG AR GTG FDLVL+
Sbjct: 1397 GINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQARIGTGLFDLVLN 1456
Query: 4393 VEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNS---GVTPTYAGAA--WSP 4557
+ + +PQ + G + ++ + P+ P+ + TP A+ +
Sbjct: 1457 MAALQ--QAVPQEDAVAPGKEVNVYHGLASTQNLPSSMPYRAKDHEATPFVNDASLFFRE 1514
Query: 4558 TTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPS----YGGM-SPGV 4722
GG S A + A GG + +S A P + R S Y M S V
Sbjct: 1515 GVGGSSSAAPLT-ASTLYGGMHEASAVHFSQAYPAMGMSDQRVRASSVSQPYSVMSSASV 1573
Query: 4723 YSPSSPQ 4743
Y+P+S Q
Sbjct: 1574 YNPASMQ 1580
>gi|31127010|gb|AAF26623.2| RNA polymerase II largest subunit
[Ctenolepisma lineata]
Length = 624
Score = 973 bits (2515), Expect = 0.0
Identities = 462/624 (74%), Positives = 542/624 (86%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID VGVPR++AQNLTFPEIVTPFN+DK+ +LV RG++QYPGAK
Sbjct: 1 SARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMLDLVRRGNSQYPGAKYIVR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPTLHKMSMMGHRVK+LPWST
Sbjct: 61 DNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVTSPYNADFDGDEMNLH+PQS+ETRAE+E I + PRQ+ITPQ+NKPVMGIVQDT
Sbjct: 121 FRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQSNKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF++ MM++LM+LP WDGK+P P+ILKPKPLWTGKQVFSLIIPGNVN
Sbjct: 181 LTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPYPSILKPKPLWTGKQVFSLIIPGNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
V RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ LELG
Sbjct: 241 VTRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGSSAGSLLHICMLELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+E+ FY +IQTV+N WL+ EGH+IGIGDTIAD TY +IQ I+KAK+DV++VI+KAH
Sbjct: 301 HEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYTEIQRAIKKAKEDVIEVIQKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
N +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN INI
Sbjct: 361 NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q++PT+K +N VFE+ F+ D T+ ++LR+ ++ED++RE+ S D IS +E EW QL E
Sbjct: 541 EFQSLPTLKLSNRVFEKRFKFDPTNERYLRRVFTEDILRELMGSGDVISELEKEWEQLVE 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LRKIFP G+ +VLPCNLQR
Sbjct: 601 DREALRKIFPTGETSVVLPCNLQR 624
>gi|31127042|gb|AAF26663.2| RNA polymerase II largest subunit
[Tanystylum orbiculare]
Length = 624
Score = 967 bits (2501), Expect = 0.0
Identities = 462/624 (74%), Positives = 541/624 (86%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID VGVPR+IAQNLTFPEIVTPFN+DK+ ELV+RG++QYPGAK
Sbjct: 1 SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMHELVHRGNSQYPGAKYIIR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG RVDLR+HP+ +D+HLQ GYRVERH++DGD+++FNRQPTLHKMSMMGHRV++LPWST
Sbjct: 61 DNGERVDLRFHPKPSDVHLQYGYRVERHVRDGDVVIFNRQPTLHKMSMMGHRVRVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVT+PYNADFDGDEMNLH+PQSLETRAEIE++AMVPR +ITPQANKPVMGIVQDT
Sbjct: 121 FRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEIEKLAMVPRNIITPQANKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF++ MM LLM+LPTWDG++ QPAILKPKPLWTGKQ+FSLIIPG VN
Sbjct: 181 LMAVRKMTKRDVFLERDQMMTLLMFLPTWDGRMMQPAILKPKPLWTGKQLFSLIIPGTVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
+RTHSTHPD ED GPYKWISPGDTKV+IEHG LLSGI+C +TVG S G+L+H+V LELG
Sbjct: 241 CIRTHSTHPDDEDDGPYKWISPGDTKVLIEHGHLLSGIICKRTVGPSGGSLMHIVMLELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+E+A FY HIQTV+N WL+ EGH+IGIGDTIAD TY DI+NTIRKAK DV++VIEKAH
Sbjct: 301 HEVAGLFYGHIQTVVNNWLLLEGHSIGIGDTIADHQTYQDIRNTIRKAKNDVIEVIEKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSEFNNF INI
Sbjct: 361 NDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVSGSKGSKINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPF FR RTLPHFIK P S+GFVENSYL+GLTP+EFFFHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFVFRKRTLPHFIKXXXXPXSRGFVENSYLSGLTPAEFFFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMV YDGT+RNS+ Q++QLRYGEDGLDG V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSVQQLIQLRYGEDGLDGTMV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E+Q +PT+KP++ F+R F+ D + ++LR+ ++EDVV+E+ S + +E E+ +L++
Sbjct: 541 ESQMLPTIKPSDQAFQRMFKFDPSSERYLRRVFTEDVVKELISSGVALGELEKEYERLKK 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR +LR +FP GD K+VLPCNL R
Sbjct: 601 DREVLRSVFPTGDNKVVLPCNLNR 624
>gi|31127030|gb|AAF26646.2| RNA polymerase II largest subunit [Nebalia
hessleri]
Length = 624
Score = 966 bits (2497), Expect = 0.0
Identities = 459/624 (73%), Positives = 543/624 (86%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVITADPNL ID VGVPR+IAQNLT+PEIVTPFN+ K+ ELV RG++QYPGAK
Sbjct: 1 SARTVITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNIQKMMELVKRGNSQYPGAKYIVR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NGAR+DLRYHP+ +DLHLQ GY+VERH+ DGD+++FNRQPTLHKMSMMGHRVK+LPWST
Sbjct: 61 DNGARIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVTSPYNADFDGDEMNLH+PQS+ETRAEIE + + PR +ITPQ+NKPVMGIVQDT
Sbjct: 121 FRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENMHVTPRMIITPQSNKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF++ MM+ LM+LP WDGK+PQPAILKPKPLWTGKQ+F++IIPGN+N
Sbjct: 181 LTAVRKMTKRDVFLEMHEMMNCLMFLPIWDGKMPQPAILKPKPLWTGKQLFTMIIPGNLN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
+++THSTHPD ED GPYKWISPGDTKV++EHG+L+ GI+C K++G S+G+LLH+ +ELG
Sbjct: 241 MVKTHSTHPDDEDDGPYKWISPGDTKVLVEHGDLVMGIICKKSLGASSGSLLHICWMELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
++IA FY +IQTV+N WL+ EGH+IGIGDTI+D TY DI +TIRKAK+DV++VI KAH
Sbjct: 301 HDIAGRFYGNIQTVVNNWLLLEGHSIGIGDTISDPNTYRDITDTIRKAKEDVMEVIHKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
NDDLE TPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN INI
Sbjct: 361 NDDLEATPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL G +V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQVIQLRYGEDGLAGEFV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q MPT+K +N FE +R D T+ ++LR+ ++E+VVREI S D IS++E E+ QL E
Sbjct: 541 EFQKMPTVKMSNRRFEDKYRFDPTNERYLRRLFNEEVVREIIGSGDAISMLEQEYQQLSE 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR+ LR IFP+GD K+VLPCNL R
Sbjct: 601 DRKTLRTIFPKGDTKVVLPCNLDR 624
>gi|102082|pir||B31494 DNA-directed RNA polymerase (EC 2.7.7.6) IIB -
Trypanosoma brucei
Length = 1765
Score = 964 bits (2491), Expect = 0.0
Identities = 605/1584 (38%), Positives = 875/1584 (55%), Gaps = 48/1584 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 204
Q L V+ VQF I +IK +V VE + YE G+P GG+ D R G D C T
Sbjct: 11 QMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACET 70
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK- 381
C +CPGHFG++ELA+PVF+IG L +L+CVC CG LL++ V + L+
Sbjct: 71 CHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQHM 130
Query: 382 TGTNSKKRLTMIYDL-CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
TG N +++ + + C+ + E GCG QP R
Sbjct: 131 TGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRGCGASQPRVSR 190
Query: 559 VGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
K V+E E+ A++V +V +++D+D ++G DPQ P ++ T
Sbjct: 191 FYGIYPTLVIKAVHE---EQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCHPRDLVLTV 247
Query: 739 XXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQ 915
+FG ++ D+LTH++ I+K N QL+R++ + A + D R LLQ
Sbjct: 248 LPVPPPQVRPAI-SFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAAI--DRSRALLQ 304
Query: 916 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 1095
HVAT +N + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT DP
Sbjct: 305 EHVATYFNNASTHYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDP 364
Query: 1096 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRY 1263
N+ +D VGVP ++A LTFPE V N +L E R T YP A NG L
Sbjct: 365 NIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARR--TVYPSANYIHHPNGTITKLAL 422
Query: 1264 HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+ + L G VERH+ +GD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+P
Sbjct: 423 LRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTP 482
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T +
Sbjct: 483 YNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDK 542
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPD 1803
D F+D F+ + ++L W ++P PAILKP+PLWTGKQVFSLI+P VN H P
Sbjct: 543 DTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP-EVN----HPATPQ 595
Query: 1804 SEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSH 1983
P+ D+ V+I G+LL G + VG + G+L+HV+ E G + A F +
Sbjct: 596 DRPPFPHN-----DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFING 650
Query: 1984 IQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGN 2163
+Q V +L+ G ++G+ DT+AD T + + + K +++V + A+N L G
Sbjct: 651 VQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGM 710
Query: 2164 TLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQ 2343
TL Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQ
Sbjct: 711 TLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQ 770
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
NV G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EFFFH M GREGLIDTA
Sbjct: 771 NVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTA 830
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTM-- 2697
VKT++TGY+QR+LIKA+E V YDGTVRN+ +++Q YGEDGLDG +E + +
Sbjct: 831 VKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPF 890
Query: 2698 ---KPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESE-DGISLVESEWSQLEEDRRL 2865
K ++ ++ +D T + + NY + VR+I ++ + ++ E+ QL DR
Sbjct: 891 RDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKIVAADPQNVRKLQEEYEQLTADREW 950
Query: 2866 LRKIF---PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKLI 3033
RK+ R K+ LP N RLI NA+ + R V NLSP+ +I VR+L + L+
Sbjct: 951 SRKMLDLEDRDKLKLNLPVNPGRLIQNARS--TMGKRSQVSNLSPITIIDHVRKLQEDLM 1008
Query: 3034 IV-----SGND-----EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGE 3183
+ G D +S++ +A L N+ LR L +K + + KLN AF++LL E
Sbjct: 1009 KLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKE 1068
Query: 3184 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVS 3363
I +++ Q++ PGE +GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NVS
Sbjct: 1069 IRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVS 1128
Query: 3364 KTLKTPSLTV--FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAED 3537
+ K S+TV F ++ +KA+ + +E+ TL+ +T YDPDP++TV+ D
Sbjct: 1129 RNQKHASMTVSLFPPYDEKRNAQKAQHL---IEYCTLESITRRIQFIYDPDPRHTVVEAD 1185
Query: 3538 EEWVSIFYEMPD--------HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN 3693
+ + + + + D ++ SPW++R+ELD + DK L M+ + I +
Sbjct: 1186 RDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVKQAILRVDES 1245
Query: 3694 DVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPA 3873
+ +N + R+R + + + K++ ++ +L+ + L+GIP
Sbjct: 1246 YIIETGMANNVRQRTIRMR----SRYNEGADSIPKLKREI------PALLARVHLRGIPG 1295
Query: 3874 ISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL-------SERQIDPVR 4032
+ + + D + + G W ++TDGTAL R + I+ V+
Sbjct: 1296 VRRALLK----DTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVK 1351
Query: 4033 TTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 4212
T+SN + E+ +LGIEA R + E+ G +NYRH +L D + G+LMA++R
Sbjct: 1352 TSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSR 1411
Query: 4213 HGINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVL 4389
GINR + G LMRCSFEETV +LM AA E DPV+GVS N++LG AR GTG FDLVL
Sbjct: 1412 SGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVL 1471
Query: 4390 DVEKCKYGMEIPQNVVMGG--GFYGSFAGS-PSNREFSPAHSPWNSGVTPTYAGAAWSPT 4560
++ + + + V G Y S + N + S A+ P + TP A+
Sbjct: 1472 NMAALQQAVPQAEAVAPGKDVNVYHSLGSTLQQNIQSSIAYRPRDHDATPFVNNASLFLR 1531
Query: 4561 TGGMSPGAGFSPAGNTDGGASPFN 4632
G G G S A T ++P+N
Sbjct: 1532 QGF---GGGSSSAPVT--ASAPYN 1550
>gi|31127024|gb|AAF26639.2| RNA polymerase II largest subunit
[Limnadia lenticularis]
Length = 624
Score = 964 bits (2491), Expect = 0.0
Identities = 455/624 (72%), Positives = 545/624 (86%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID VGVPR+IAQNLTFPEIVTPFN++K+QELV RG++QYPGAK
Sbjct: 1 SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKMQELVRRGNSQYPGAKFIIR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG R+DLR++P+++DLHLQ GY+VERH+ DGD++VFNRQPTLHKMSMMGHRVK+LPWST
Sbjct: 61 DNGDRIDLRFNPKSSDLHLQCGYKVERHVHDGDLVVFNRQPTLHKMSMMGHRVKVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLS TSPYNADFDGDEMNLH+PQS+ETRAEIE I + PRQ+ITPQANKPVMGIVQDT
Sbjct: 121 FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHVTPRQIITPQANKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
LCAVR MTKRDVF++ MM+LLM+LPTWDGK+PQPAI+KP+PLWTGKQ+F+LIIPGNVN
Sbjct: 181 LCAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAIIKPRPLWTGKQLFTLIIPGNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
++RTHSTHPD ED GPYKWISPGDTKVI+E+GEL+ GI+C KT+G SA +LLH++ +ELG
Sbjct: 241 MIRTHSTHPDDEDDGPYKWISPGDTKVIVENGELIMGILCKKTLGASAASLLHIIFMELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+E+ FY +IQTV+N WL+ EGH+IGIGDTIAD TYLDIQ TI+KAK+DV++VI+K+H
Sbjct: 301 HEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLDIQATIKKAKEDVIEVIQKSH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN INI
Sbjct: 361 NDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRNS+ Q++Q RYGEDGL G V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQFRYGEDGLAGESV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q+ PT+K +N FE+ F+ D ++ +++R+ ++E+V +E+ S + ++ +E EW QL +
Sbjct: 541 EFQSQPTIKLSNKAFEKKFKFDPSNERYVRRIFNEEVAKELSSSGEVLTEIEREWEQLCK 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LR IFP G+ K+VLPCNLQR
Sbjct: 601 DREALRTIFPTGENKVVLPCNLQR 624
>gi|31127008|gb|AAK11873.2| RNA polymerase II largest subunit
[Bothropolys multidentatus]
Length = 624
Score = 963 bits (2490), Expect = 0.0
Identities = 457/624 (73%), Positives = 543/624 (86%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID VGVPR+IAQNLTFPEIVTPFN+DK+QELV RG+ QYPGAK
Sbjct: 1 SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNNQYPGAKYIIR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPTLHKMSMMGH +++LPWST
Sbjct: 61 DNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVT+PYNADFDGDEMNLH+PQS+ETRAEIEE+A+VPRQ+ITPQ+N+PVMGIVQDT
Sbjct: 121 FRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF++ MM+LLM+LP WDGK+P PAILKPKPLWTGKQ+FSLIIPGNVN
Sbjct: 181 LTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPGNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
+R H +HPD ED PYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+V LELG
Sbjct: 241 CIRAHYSHPDDEDDSPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVMLELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+ +A FY HIQ VIN WL+ EGH+IGI DTIAD TY+DIQN+I+KAKQDV++VIEKAH
Sbjct: 301 WGVAGLFYWHIQMVINNWLLLEGHSIGIDDTIADPQTYIDIQNSIKKAKQDVIEVIEKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN+VN+ILNDARD+TGSSA+KSLSEFNNF INI
Sbjct: 361 NDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAEKSLSEFNNFKSMVVSGAKGXXINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVI VGQQNVEGKRIPFGF RTLPHFIK+DYGPES+GFVENSYLAGLTPSEFFFHAM
Sbjct: 421 SQVIXXVGQQNVEGKRIPFGFCKRTLPHFIKNDYGPESRGFVENSYLAGLTPSEFFFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMES+M YDGT+RNS+ Q++QLRYGEDGLDG V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESIMATYDGTIRNSVGQLIQLRYGEDGLDGGAV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q +PT+KP+N FE+ F+ D+++ + L++ ++ED+V+++ S ++ +E EW L+
Sbjct: 541 EFQALPTLKPSNKAFEKKFKFDVSNERQLKRVFNEDIVKDLMGSAQIVNELEKEWETLKR 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LLR IFP+GD+K+VLPCNL R
Sbjct: 601 DRELLRNIFPKGDSKVVLPCNLTR 624
>gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit
Length = 1765
Score = 963 bits (2489), Expect = 0.0
Identities = 604/1584 (38%), Positives = 875/1584 (55%), Gaps = 48/1584 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 204
Q L V+ VQF I +IK +V VE + YE G+P GG+ D R G D C T
Sbjct: 11 QMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACET 70
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK- 381
C +CPGHFG++ELA+PVF+IG L +L+CVC CG LL++ V + L+
Sbjct: 71 CHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQHM 130
Query: 382 TGTNSKKRLTMIYDL-CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
TG N +++ + + C+ + E GCG QP R
Sbjct: 131 TGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRGCGASQPRVSR 190
Query: 559 VGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
K V+E E+ A++V +V +++D+D ++G DPQ P ++ T
Sbjct: 191 FYGIYPTLVIKAVHE---EQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCHPRDLVLTV 247
Query: 739 XXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQ 915
+FG ++ D+LTH++ I+K N QL+R++ + A + D R LLQ
Sbjct: 248 LPVPPPQVRPAI-SFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAAI--DRSRALLQ 304
Query: 916 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 1095
HVAT +N + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT DP
Sbjct: 305 EHVATYFNNASTHYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDP 364
Query: 1096 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRY 1263
N+ +D VGVP ++A LTFPE V N +L E R T YP A NG L
Sbjct: 365 NIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARR--TVYPSANYIHHPNGTITKLAL 422
Query: 1264 HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+ + L G VERH+ +GD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+P
Sbjct: 423 LRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTP 482
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T +
Sbjct: 483 YNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDK 542
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPD 1803
D F+D F+ + ++L W ++P PAILKP+PLWTGKQVFSLI+P VN H P
Sbjct: 543 DTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP-EVN----HPATPQ 595
Query: 1804 SEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSH 1983
P+ D+ V+I G+LL G + VG + G+L+HV+ E G + A F +
Sbjct: 596 DRPPFPHN-----DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFING 650
Query: 1984 IQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGN 2163
+Q V +L+ G ++G+ DT+AD T + + + K +++V + A+N L G
Sbjct: 651 VQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGM 710
Query: 2164 TLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQ 2343
TL Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQ
Sbjct: 711 TLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQ 770
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
NV G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EFFFH M GREGLIDTA
Sbjct: 771 NVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTA 830
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTM-- 2697
VKT++TGY+QR+LIKA+E V YDGTVRN+ +++Q YGEDGLDG +E + +
Sbjct: 831 VKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPF 890
Query: 2698 ---KPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESE-DGISLVESEWSQLEEDRRL 2865
K ++ ++ +D T + + NY + VR++ ++ + ++ E+ QL DR
Sbjct: 891 RDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQEEYEQLTADREW 950
Query: 2866 LRKIF---PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKLI 3033
RK+ R K+ LP N RLI NA+ + R V NLSP+ +I VR+L + L+
Sbjct: 951 SRKMLDLEDRDKLKLNLPVNPGRLIQNARS--TMGKRSQVSNLSPITIIDHVRKLQEDLM 1008
Query: 3034 IV-----SGND-----EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGE 3183
+ G D +S++ +A L N+ LR L +K + + KLN AF++LL E
Sbjct: 1009 KLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKE 1068
Query: 3184 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVS 3363
I +++ Q++ PGE +GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NVS
Sbjct: 1069 IRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVS 1128
Query: 3364 KTLKTPSLTV--FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAED 3537
+ K S+TV F ++ +KA+ + +E+ TL+ +T YDPDP++TV+ D
Sbjct: 1129 RNQKHASMTVSLFPPYDEKRNAQKAQHL---IEYCTLESITRRIQFIYDPDPRHTVVEAD 1185
Query: 3538 EEWVSIFYEMPD--------HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN 3693
+ + + + + D ++ SPW++R+ELD + DK L M+ + I +
Sbjct: 1186 RDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVKQAILRVDES 1245
Query: 3694 DVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPA 3873
+ +N + R+R + + + K++ ++ +L+ + L+GIP
Sbjct: 1246 YIIETGMANNVRQRTIRMR----SRYNEGADSIPKLKREI------PALLARVHLRGIPG 1295
Query: 3874 ISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL-------SERQIDPVR 4032
+ + + D + + G W ++TDGTAL R + I+ V+
Sbjct: 1296 VRRALLK----DTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVK 1351
Query: 4033 TTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 4212
T+SN + E+ +LGIEA R + E+ G +NYRH +L D + G+LMA++R
Sbjct: 1352 TSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSR 1411
Query: 4213 HGINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVL 4389
GINR + G LMRCSFEETV +LM AA E DPV+GVS N++LG AR GTG FDLVL
Sbjct: 1412 SGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVL 1471
Query: 4390 DVEKCKYGMEIPQNVVMGG--GFYGSFAGS-PSNREFSPAHSPWNSGVTPTYAGAAWSPT 4560
++ + + + V G Y S + N + S A+ P + TP A+
Sbjct: 1472 NMAALQQAVPQAEAVAPGKDVNVYHSLGSTLQQNIQSSIAYRPRDHDATPFVNNASLFLR 1531
Query: 4561 TGGMSPGAGFSPAGNTDGGASPFN 4632
G G G S A T ++P+N
Sbjct: 1532 QGF---GGGSSSAPVT--ASAPYN 1550
>gi|102081|pir||A31494 DNA-directed RNA polymerase (EC 2.7.7.6) IIA -
Trypanosoma brucei
Length = 1765
Score = 963 bits (2489), Expect = 0.0
Identities = 605/1584 (38%), Positives = 875/1584 (55%), Gaps = 48/1584 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 204
Q L V+ VQF I +IK +V VE + YE G+P GG+ D R G D C T
Sbjct: 11 QMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACET 70
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK- 381
C +CPGHFG++ELA+PVF+IG L +L+CVC CG LL++ V + L+
Sbjct: 71 CHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQHM 130
Query: 382 TGTNSKKRLTMIYDL-CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
TG N +++ + + C+ + E GCG QP R
Sbjct: 131 TGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRGCGASQPRVSR 190
Query: 559 VGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
K V+E E+ A++V +V +++D+D ++G DPQ P ++ T
Sbjct: 191 FYGIYPTLVIKAVHE---EQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCHPRDLVLTV 247
Query: 739 XXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQ 915
+FG ++ D+LTH++ I+K N QL+R++ + A + D R LLQ
Sbjct: 248 LPVPPPQVRPAI-SFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAAI--DRSRALLQ 304
Query: 916 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 1095
HVAT +N + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT DP
Sbjct: 305 EHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDP 364
Query: 1096 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRY 1263
N+ +D VGVP ++A LTFPE V N +L E R T YP A NG L
Sbjct: 365 NIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARR--TVYPSANYIHHPNGTITKLAL 422
Query: 1264 HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+ + L G VERH+ +GD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+P
Sbjct: 423 LRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTP 482
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T +
Sbjct: 483 YNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDK 542
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPD 1803
D F+D F+ + ++L W ++P PAILKP+PLWTGKQVFSLI+P VN H P
Sbjct: 543 DTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP-EVN----HPATPQ 595
Query: 1804 SEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSH 1983
P+ D+ V+I G+LL G + VG + G+L+HV+ E G + A F +
Sbjct: 596 DRPPFPHN-----DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFING 650
Query: 1984 IQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGN 2163
+Q V +L+ G ++G+ DT+AD T + + + K +++V + A+N L G
Sbjct: 651 VQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGM 710
Query: 2164 TLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQ 2343
TL Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQ
Sbjct: 711 TLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQ 770
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
NV G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EFFFH M GREGLIDTA
Sbjct: 771 NVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTA 830
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTM-- 2697
VKT++TGY+QR+LIKA+E V YDGTVRN+ +++Q YGEDGLDG +E + +
Sbjct: 831 VKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPF 890
Query: 2698 ---KPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESE-DGISLVESEWSQLEEDRRL 2865
K ++ ++ +D T + + NY + VR+I ++ + ++ E+ QL DR
Sbjct: 891 RDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKIVAADPQNVRKLQEEYEQLTADREW 950
Query: 2866 LRKIF---PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKLI 3033
RK+ R K+ LP N RLI NA+ + R V NLSP+ +I VR+L + L+
Sbjct: 951 SRKMLDLEDRDKLKLNLPVNPGRLIQNARS--TMGKRSQVSNLSPITIIDHVRKLQEDLM 1008
Query: 3034 IV-----SGND-----EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGE 3183
+ G D +S++ +A L N+ LR L +K + + KLN AF++LL E
Sbjct: 1009 KLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKE 1068
Query: 3184 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVS 3363
I +++ Q++ PGE +GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NVS
Sbjct: 1069 IRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVS 1128
Query: 3364 KTLKTPSLTV--FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAED 3537
+ K S+TV F ++ +KA+ + +E+ TL+ +T YDPDP++TV+ D
Sbjct: 1129 RNQKHASMTVSLFPPYDEKRNAQKAQHL---IEYCTLESITRRIQFIYDPDPRHTVVEAD 1185
Query: 3538 EEWVSIFYEMPD--------HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN 3693
+ + + + + D ++ SPW++R+ELD + DK L M+ + I +
Sbjct: 1186 RDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVKQAILRVDES 1245
Query: 3694 DVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPA 3873
+ +N + R+R + + + K++ ++ +L+ + L+GIP
Sbjct: 1246 YIIETGMANNVRQRTIRMR----SRYNEGADSIPKLKREI------PALLARVHLRGIPG 1295
Query: 3874 ISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL-------SERQIDPVR 4032
+ + + D + + G W ++TDGTAL R + I+ V+
Sbjct: 1296 VRRALLK----DTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVK 1351
Query: 4033 TTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 4212
T+SN + E+ +LGIEA R + E+ G +NYRH +L D + G+LMA++R
Sbjct: 1352 TSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSR 1411
Query: 4213 HGINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVL 4389
GINR + G LMRCSFEETV +LM AA E DPV+GVS N++LG AR GTG FDLVL
Sbjct: 1412 SGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVL 1471
Query: 4390 DVEKCKYGMEIPQNVVMGG--GFYGSFAGS-PSNREFSPAHSPWNSGVTPTYAGAAWSPT 4560
++ + + + V G Y S + N + S A+ P + TP A+
Sbjct: 1472 NMAALQQAVPQAEAVAPGKDVNVYHSLGSTLQQNIQSSIAYRPRDHDATPFVNNASLFLR 1531
Query: 4561 TGGMSPGAGFSPAGNTDGGASPFN 4632
G G G S A T ++P+N
Sbjct: 1532 QGF---GGGSSSAPVT--ASAPYN 1550
>gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit
Length = 1765
Score = 962 bits (2487), Expect = 0.0
Identities = 604/1584 (38%), Positives = 875/1584 (55%), Gaps = 48/1584 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 204
Q L V+ VQF I +IK +V VE + YE G+P GG+ D R G D C T
Sbjct: 11 QMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACET 70
Query: 205 CAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK- 381
C +CPGHFG++ELA+PVF+IG L +L+CVC CG LL++ V + L+
Sbjct: 71 CHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQHM 130
Query: 382 TGTNSKKRLTMIYDL-CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
TG N +++ + + C+ + E GCG QP R
Sbjct: 131 TGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRGCGASQPRVSR 190
Query: 559 VGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
K V+E E+ A++V +V +++D+D ++G DPQ P ++ T
Sbjct: 191 FYGIYPTLVIKAVHE---EQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCHPRDLVLTV 247
Query: 739 XXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LLQ 915
+FG ++ D+LTH++ I+K N QL+R++ + A + D R LLQ
Sbjct: 248 LPVPPPQVRPAI-SFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAAI--DRSRALLQ 304
Query: 916 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 1095
HVAT +N + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT DP
Sbjct: 305 EHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDP 364
Query: 1096 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRY 1263
N+ +D VGVP ++A LTFPE V N +L E R T YP A NG L
Sbjct: 365 NIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARR--TVYPSANYIHHPNGTITKLAL 422
Query: 1264 HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+ + L G VERH+ +GD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+P
Sbjct: 423 LRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTP 482
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T +
Sbjct: 483 YNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDK 542
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPD 1803
D F+D F+ + ++L W ++P PAILKP+PLWTGKQVFSLI+P VN H P
Sbjct: 543 DTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP-EVN----HPATPQ 595
Query: 1804 SEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSH 1983
P+ D+ V+I G+LL G + VG + G+L+HV+ E G + A F +
Sbjct: 596 DRPPFPHN-----DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFING 650
Query: 1984 IQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGN 2163
+Q V +L+ G ++G+ DT+AD T + + + K +++V + A+N L G
Sbjct: 651 VQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGM 710
Query: 2164 TLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQ 2343
TL Q+FE VN LN R+ A ++ N+F +NI Q+ VGQQ
Sbjct: 711 TLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQ 770
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
NV G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EFFFH M GREGLIDTA
Sbjct: 771 NVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTA 830
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTM-- 2697
VKT++TGY+QR+LIKA+E V YDGTVRN+ +++Q YGEDGLDG +E + +
Sbjct: 831 VKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLPF 890
Query: 2698 ---KPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESE-DGISLVESEWSQLEEDRRL 2865
K ++ ++ +D T + + NY + VR++ ++ + ++ E+ QL DR
Sbjct: 891 RDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQEEYEQLTADREW 950
Query: 2866 LRKIF---PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKLI 3033
RK+ R K+ LP N RLI NA+ + R V NLSP+ +I VR+L + L+
Sbjct: 951 SRKMLDLEDRDKLKLNLPVNPGRLIQNARS--TMGKRSQVSNLSPITIIDHVRKLQEDLM 1008
Query: 3034 IV-----SGND-----EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGE 3183
+ G D +S++ +A L N+ LR L +K + + KLN AF++LL E
Sbjct: 1009 KLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKE 1068
Query: 3184 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVS 3363
I +++ Q++ PGE +GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NVS
Sbjct: 1069 IRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVS 1128
Query: 3364 KTLKTPSLTV--FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAED 3537
+ K S+TV F ++ +KA+ + +E+ TL+ +T YDPDP++TV+ D
Sbjct: 1129 RNQKHASMTVSLFPPYDEKRNAQKAQHL---IEYCTLESITRRIQFIYDPDPRHTVVEAD 1185
Query: 3538 EEWVSIFYEMPD--------HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGN 3693
+ + + + + D ++ SPW++R+ELD + DK L M+ + I +
Sbjct: 1186 RDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVKQAILRVDES 1245
Query: 3694 DVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPA 3873
+ +N + R+R + + + K++ ++ +L+ + L+GIP
Sbjct: 1246 YIIETGMANNVRQRTIRMR----SRYNEGADSIPKLKREI------PALLARVHLRGIPG 1295
Query: 3874 ISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL-------SERQIDPVR 4032
+ + + D + + G W ++TDGTAL R + I+ V+
Sbjct: 1296 VRRALLK----DTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVK 1351
Query: 4033 TTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 4212
T+SN + E+ +LGIEA R + E+ G +NYRH +L D + G+LMA++R
Sbjct: 1352 TSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSR 1411
Query: 4213 HGINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVL 4389
GINR + G LMRCSFEETV +LM AA E DPV+GVS N++LG AR GTG FDLVL
Sbjct: 1412 SGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVL 1471
Query: 4390 DVEKCKYGMEIPQNVVMGG--GFYGSFAGS-PSNREFSPAHSPWNSGVTPTYAGAAWSPT 4560
++ + + + V G Y S + N + S A+ P + TP A+
Sbjct: 1472 NMAALQQAVPQAEAVAPGKDVNVYHSLGSTLQQNIQSSIAYRPRDHDATPFVNNASLFLR 1531
Query: 4561 TGGMSPGAGFSPAGNTDGGASPFN 4632
G G G S A T ++P+N
Sbjct: 1532 QGF---GGGSSSAPVT--ASAPYN 1550
>gi|38232323|gb|AAR14997.1| RNA polymerase II largest subunit
[Neogonodactylus oerstedii]
Length = 624
Score = 962 bits (2487), Expect = 0.0
Identities = 458/624 (73%), Positives = 538/624 (85%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVITADPNL ID VGVPR+IAQNLT+PEIVTPFN+ K+ ELV RG+ QYPGAK
Sbjct: 1 SARTVITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNMTKMMELVKRGNNQYPGAKYIVR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NGAR+DLRYHP+ +DLHLQ GY+VERH+ DGD+++FNRQPTLHKMSMMGHRVK+LPWST
Sbjct: 61 DNGARIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVTSPYNADFDGDEMNLH+PQS+ETRAEIE + + PR +ITPQANKPVMGIVQDT
Sbjct: 121 FRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENLHVTPRMIITPQANKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF++ MM LLM+LP WDG++PQPAILKPKP WTGKQ+FSLIIPGN+N
Sbjct: 181 LTAVRKMTKRDVFLEKHEMMTLLMFLPIWDGRMPQPAILKPKPYWTGKQIFSLIIPGNLN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
+++THSTHPD ED GPY+WISPGDTKV++EHGEL+ GI+C KT+G S+G+LLHV +ELG
Sbjct: 241 LIKTHSTHPDDEDDGPYRWISPGDTKVLVEHGELIMGILCKKTLGSSSGSLLHVAWMELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+EIA FY +IQTVIN WL+ EGH+IGIGDTI+D +TY IQ TI KAK+DV++VI KAH
Sbjct: 301 HEIAGRFYGNIQTVINNWLLLEGHSIGIGDTISDPSTYGVIQATIHKAKEDVIEVIHKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN INI
Sbjct: 361 NDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS++Q++QLRYGEDGL G +V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAGEFV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q MPT+K + FE ++ D T+ ++LRK Y+EDVV+E+ S I+ +E EW QL++
Sbjct: 541 EFQKMPTVKLSKRRFEEKYKFDPTNERYLRKLYNEDVVKELIGSSHAINTLEQEWQQLQQ 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LR +FP+GD +V PCNL+R
Sbjct: 601 DREALRLVFPKGDTSVVQPCNLER 624
>gi|31127003|gb|AAF26621.2| RNA polymerase II largest subunit
[Semibalanus balanoides]
Length = 624
Score = 957 bits (2474), Expect = 0.0
Identities = 452/624 (72%), Positives = 544/624 (86%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVITADPNL ID VGVP+TIA NLT+PEIVTPFN+DK+Q+LV RG+ QYPGAK
Sbjct: 1 SARTVITADPNLRIDQVGVPKTIALNLTYPEIVTPFNIDKMQDLVKRGNNQYPGAKYIIR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG R+DLR+HP+ +DLHLQ GY+VERH+ DGD+++FNRQPTLHKMSMMGHRVK+LPWST
Sbjct: 61 DNGERIDLRFHPKPSDLHLQCGYKVERHIIDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLSVTSPYNADFDGDEMNLH+PQS+ETRAEIE + + PR ++TPQ+NKPVMGIVQDT
Sbjct: 121 FRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENMHVTPRMIVTPQSNKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
L AVR MTKRDVF++ MM++LM+LPTWDGK+P PAI+KP+PLWTGKQ+FSLIIPGNVN
Sbjct: 181 LTAVRKMTKRDVFLEKEEMMNMLMFLPTWDGKIPVPAIIKPRPLWTGKQLFSLIIPGNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
++RTHSTHPD EDSGPYKW+SPGDTKV++++GEL+ GI+C K++G SAG+LLH+ LELG
Sbjct: 241 MVRTHSTHPDDEDSGPYKWVSPGDTKVLVDNGELIMGILCKKSLGASAGSLLHICWLELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
++IA +FY IQ+V+NAWL+ EGH+IGIGDTI+D TY DIQNTIRKAK+DV+ VIEKAH
Sbjct: 301 HDIAGHFYHDIQSVVNAWLLYEGHSIGIGDTISDPDTYSDIQNTIRKAKEDVIQVIEKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN VN+ILNDARD+TG+SA+ SL E+NN INI
Sbjct: 361 NDELEPTPGNTLRQTFENHVNRILNDARDKTGASAKNSLGEYNNLKAMVVAGSKGSNINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EF+FHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGT+RNS+AQ+VQLRYGEDGL G +V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTLRNSVAQLVQLRYGEDGLAGEFV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q++PT+K ++A F R F+ + T+ + LR+ + ED+VR++ S + I +E EW L
Sbjct: 541 EFQSLPTIKLSDAAFRRKFKFETTNERQLRRVFQEDIVRDLMGSGEIIGELEREWETLSR 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR+ LR+IFP G++++VLPCNL+R
Sbjct: 601 DRQELRQIFPTGESRVVLPCNLER 624
>gi|31127032|gb|AAF26647.2| RNA polymerase II largest subunit
[Cypridopsis vidua]
Length = 624
Score = 951 bits (2459), Expect = 0.0
Identities = 456/624 (73%), Positives = 533/624 (85%), Gaps = 4/624 (0%)
Frame = +1
Query: 1066 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---- 1233
SARTVIT DPNL ID +GVPR+IAQNLTFPEIVTPFN D LQ LV+RG++QYPGAK
Sbjct: 1 SARTVITPDPNLRIDQLGVPRSIAQNLTFPEIVTPFNHDDLQRLVHRGNSQYPGAKYIIR 60
Query: 1234 ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWST 1413
+NG R+DLR+HP+ +DLHL+ GY+VERH++DGD+++FNRQPTLHKMSMMGHRVK+LPWST
Sbjct: 61 DNGERIDLRFHPKPSDLHLEVGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 120
Query: 1414 FRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDT 1593
FRMNLS TSPYNADFDGDEMN+H+PQS+ETRAEIE + + PR +ITPQANKPVMGIVQDT
Sbjct: 121 FRMNLSCTSPYNADFDGDEMNMHVPQSMETRAEIENLHLTPRMVITPQANKPVMGIVQDT 180
Query: 1594 LCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
LCAVR MTKRDVF++ +MDLLM+LP WDG++P PAILKPKPLWTGKQ+FSLIIPGNVN
Sbjct: 181 LCAVRKMTKRDVFLEKDQIMDLLMHLPRWDGRMPVPAILKPKPLWTGKQLFSLIIPGNVN 240
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
++RTHSTHPD ED GPYKWISPGDTKV+IEHG+L+ GI+C +T+G SAG+LLH+ LELG
Sbjct: 241 LVRTHSTHPDDEDDGPYKWISPGDTKVLIEHGQLIMGILCKRTLGASAGSLLHICWLELG 300
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
+EI FY IQTVIN WL+ EGH+IGIGDTIAD TYL+IQ TIRKAK+DV DVI+KAH
Sbjct: 301 HEICGLFYGQIQTVINNWLLIEGHSIGIGDTIADTQTYLEIQTTIRKAKEDVNDVIQKAH 360
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINI 2313
ND+LEPTPGNTLRQTFEN VN+ILNDARD+TGSSA+KSL+E+NN INI
Sbjct: 361 NDELEPTPGNTLRQTFENMVNRILNDARDKTGSSAKKSLTEYNNLKAMVVAGSKGSNINI 420
Query: 2314 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 2493
SQVIACVGQQNVEGKRIPFGFR RTLPHFIK PES+GFVENSYLAGLTPSEF+FHAM
Sbjct: 421 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKXXXXPESRGFVENSYLAGLTPSEFYFHAM 480
Query: 2494 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 2673
GGREGLIDTAVKTAETGYIQRRLIKAMESV V YDGT+RNS++Q++QLRYGEDGL +V
Sbjct: 481 GGREGLIDTAVKTAETGYIQRRLIKAMESVTVGYDGTIRNSVSQLIQLRYGEDGLAAEFV 540
Query: 2674 ENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 2853
E Q++PT+KP+N FER F+ D T+ ++LR+ Y E++V+EI S + I +E EW QL
Sbjct: 541 EFQSLPTVKPSNVAFERKFKFDPTNERYLRRVYREEIVKEIMSSGEIIGGLEQEWEQLCR 600
Query: 2854 DRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LRKIFP G+ K+VLPC L R
Sbjct: 601 DREALRKIFPTGENKVVLPCKLDR 624
>gi|133332|sp|P17546|RPB2_TRYBB DNA-directed RNA polymerase II largest
subunit
gi|102110|pir||A31875 DNA-directed RNA polymerase (EC 2.7.7.6) 1 -
Trypanosoma brucei
gi|10505|emb|CAA31846.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 941 bits (2432), Expect = 0.0
Identities = 599/1585 (37%), Positives = 869/1585 (54%), Gaps = 49/1585 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGV-IDRRGRCM 201
Q L V+ VQF I +IK +V VE + Y N + G V + C
Sbjct: 11 QMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVPLTSNSACE 70
Query: 202 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 381
TC +CPGHFG++ELA+PVF+IG L +L+CVC CG LL++ V + L+
Sbjct: 71 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQH 130
Query: 382 -TGTNSKKRLTMIYDL-CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYR 555
TG N +++ + + C+ + E GCG QP
Sbjct: 131 VTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRGCGASQPRVS 190
Query: 556 RVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICT 735
R K V+E E+ A++V +V +++D+D ++G DPQ P ++ T
Sbjct: 191 RFYGIYPTLVIKAVHE---EQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCHPRDLVLT 247
Query: 736 XXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LL 912
+FG ++ D+LTH++ I+K N QL+R++ + A + D R LL
Sbjct: 248 VLPVPPPQVRPAI-SFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAAI--DRSRALL 304
Query: 913 QFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITAD 1092
Q HVAT +N + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT D
Sbjct: 305 QEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGD 364
Query: 1093 PNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLR 1260
PN+ +D VGVP ++A LTFPE V N +L E R T YP A NG L
Sbjct: 365 PNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARR--TVYPSANYIHHPNGTITKLA 422
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
+ + L G VERH+ +GD+++FNRQPTLH+MSMMGHRV++L +STFR+NLS T+
Sbjct: 423 LLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYSTFRLNLSCTT 482
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T
Sbjct: 483 PYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTD 542
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
+D F+D F+ + ++L W ++P PAILKP+PLWTGKQVFSLI+P VN H P
Sbjct: 543 KDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP-EVN----HPATP 595
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
P+ D+ V+I G+LL G + VG + G+L+HV+ E G + A F +
Sbjct: 596 QDRPPFPHN-----DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFIN 650
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
+Q V +L+ G ++G+ DT+AD T + + + K +++V + A+N L G
Sbjct: 651 GVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAG 710
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
TL Q+FE VN LN R+ A ++ N+F +NI Q+ VGQ
Sbjct: 711 MTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQ 770
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNV G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EFFFH M GREGLIDT
Sbjct: 771 QNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDT 830
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTM- 2697
AVKT++TGY+QR+LIKA+E V YDGTVRN+ +++Q YGEDGLDG +E + +
Sbjct: 831 AVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLP 890
Query: 2698 ----KPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESE-DGISLVESEWSQLEEDRR 2862
K ++ ++ +D T + + NY + VR++ ++ + ++ E+ QL DR
Sbjct: 891 FRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQEEYEQLTADRE 950
Query: 2863 LLRKIF---PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKL 3030
RK+ R K+ LP N RLI NA+ + R V NLSP+ +I VR+L + L
Sbjct: 951 WSRKMLDLEDRDKLKLNLPVNPGRLIQNARS--TMGKRSQVSNLSPITIIDHVRKLQEDL 1008
Query: 3031 IIV-----SGND-----EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLG 3180
+ + G D +S++ +A L N+ LR L +K + + KLN AF++LL
Sbjct: 1009 MKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLK 1068
Query: 3181 EIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV 3360
EI +++ Q++ PGE +GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NV
Sbjct: 1069 EIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNV 1128
Query: 3361 SKTLKTPSLTV--FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAE 3534
S+ K S+TV F ++ +KA+ + +E+ TL+ +T YDPDP++TV+
Sbjct: 1129 SRNQKHASMTVSLFPPYDEKRNAQKAQHL---IEYCTLESITRRIQFIYDPDPRHTVVEA 1185
Query: 3535 DEEWVSIFYEMPD--------HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFG 3690
D + + + + + D ++ SPW++R+ELD + DK L M+ + I
Sbjct: 1186 DRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVKQAILRVDE 1245
Query: 3691 NDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIP 3870
+ + +N + R+R + + + K++ ++ +L+ + L+GIP
Sbjct: 1246 SYIIETGMANNVRQRTIRMR----SRYNEGADSIPKLKREI------PALLARVHLRGIP 1295
Query: 3871 AISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL-------SERQIDPV 4029
+ + + D + + G W ++TDGTAL R + I+ V
Sbjct: 1296 GVRRALLK----DTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAV 1351
Query: 4030 RTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 4209
+T+SN + E+ +LGIEA R + E+ G +NYRH +L D + G+LMA++
Sbjct: 1352 KTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVS 1411
Query: 4210 RHGINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV 4386
R GINR + G LMRCSFEETV +LM AA E DPV+GVS N++LG AR GTG FDLV
Sbjct: 1412 RSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLV 1471
Query: 4387 LDVEKCKYGMEIPQNVVMGG--GFYGSFAGS-PSNREFSPAHSPWNSGVTPTYAGAAWSP 4557
L++ + + + V G Y S + N + S A+ P + TP A+
Sbjct: 1472 LNMAALQQAVPQAEAVAPGKDVNVYHSLGSTLQQNIQSSIAYRPRDHDATPFVNNASLFL 1531
Query: 4558 TTGGMSPGAGFSPAGNTDGGASPFN 4632
G G G S A T ++P+N
Sbjct: 1532 RQGF---GGGSSSAPVT--ASAPYN 1551
>gi|133329|sp|P17545|RPB1_TRYBB DNA-directed RNA polymerase II largest
subunit
gi|102111|pir||B31875 DNA-directed RNA polymerase (EC 2.7.7.6) 2 -
Trypanosoma brucei
gi|10503|emb|CAA31847.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 940 bits (2430), Expect = 0.0
Identities = 598/1585 (37%), Positives = 869/1585 (54%), Gaps = 49/1585 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGV-IDRRGRCM 201
Q L V+ VQF I +IK +V VE + Y N + G V + C
Sbjct: 11 QMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVPLTSNSACE 70
Query: 202 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 381
TC +CPGHFG++ELA+PVF+IG L +L+CVC CG LL++ V + L+
Sbjct: 71 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQH 130
Query: 382 -TGTNSKKRLTMIYDL-CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYR 555
TG N +++ + + C+ + E GCG QP
Sbjct: 131 MTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRGCGASQPRVS 190
Query: 556 RVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICT 735
R K V+E E+ A++V +V +++D+D ++G DPQ P ++ T
Sbjct: 191 RFYGIYPTLVIKAVHE---EQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCHPRDLVLT 247
Query: 736 XXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR-LL 912
+FG ++ D+LTH++ I+K N QL+R++ + A + D R LL
Sbjct: 248 VLPVPPPQVRPAI-SFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAAI--DRSRALL 304
Query: 913 QFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITAD 1092
Q HVAT +N + LKS+ +RLKGK GR+RGNLMGKRVDFSARTVIT D
Sbjct: 305 QEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGD 364
Query: 1093 PNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLR 1260
PN+ +D VGVP ++A LTFPE V N +L E R T YP A NG L
Sbjct: 365 PNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARR--TVYPSANYIHHPNGTITKLA 422
Query: 1261 YHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTS 1440
+ + L G VERH+ +GD+++FNRQPTLH+MSMMGHRV++L ++TFR+NLS T+
Sbjct: 423 LLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTT 482
Query: 1441 PYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTK 1620
PYNADFDGDEMNLH+PQSL T+AE+ E+ MVP+ ++P + P MGIVQD+L +T
Sbjct: 483 PYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTD 542
Query: 1621 RDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP 1800
+D F+D F+ + ++L W ++P PAILKP+PLWTGKQVFSLI+P VN H P
Sbjct: 543 KDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP-EVN----HPATP 595
Query: 1801 DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYS 1980
P+ D+ V+I G+LL G + VG + G+L+HV+ E G + A F +
Sbjct: 596 QDRPPFPHN-----DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFIN 650
Query: 1981 HIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPG 2160
+Q V +L+ G ++G+ DT+AD T + + + K +++V + A+N L G
Sbjct: 651 GVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKAG 710
Query: 2161 NTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQ 2340
TL Q+FE VN LN R+ A ++ N+F +NI Q+ VGQ
Sbjct: 711 MTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQ 770
Query: 2341 QNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDT 2520
QNV G RIPFGFR RTLPHF+ DDYG S+G Y+ GL P EFFFH M GREGLIDT
Sbjct: 771 QNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDT 830
Query: 2521 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTM- 2697
AVKT++TGY+QR+LIKA+E V YDGTVRN+ +++Q YGEDGLDG +E + +
Sbjct: 831 AVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARIEGGQLFPLP 890
Query: 2698 ----KPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESE-DGISLVESEWSQLEEDRR 2862
K ++ ++ +D T + + NY + VR++ ++ + ++ E+ QL DR
Sbjct: 891 FRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQEEYEQLTADRE 950
Query: 2863 LLRKIF---PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSKKL 3030
RK+ R K+ LP N RLI NA+ + R V NLSP+ +I VR+L + L
Sbjct: 951 WSRKMLDLEDRDKLKLNLPVNPGRLIQNARS--TMGKRSQVSNLSPITIIDHVRKLQEDL 1008
Query: 3031 IIV-----SGND-----EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLG 3180
+ + G D +S++ +A L N+ LR L +K + + KLN AF++LL
Sbjct: 1009 MKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLK 1068
Query: 3181 EIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV 3360
EI +++ Q++ PGE +GA+AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NV
Sbjct: 1069 EIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNV 1128
Query: 3361 SKTLKTPSLTV--FLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAE 3534
S+ K S+TV F ++ +KA+ + +E+ TL+ +T YDPDP++TV+
Sbjct: 1129 SRNQKHASMTVSLFPPYDEKRNAQKAQHL---IEYCTLESITRRIQFIYDPDPRHTVVEA 1185
Query: 3535 DEEWVSIFYEMPD--------HDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFG 3690
D + + + + + D ++ SPW++R+ELD + DK L M+ + I
Sbjct: 1186 DRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKDVKQAILRVDE 1245
Query: 3691 NDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIP 3870
+ + +N + R+R + + + K++ ++ +L+ + L+GIP
Sbjct: 1246 SYIIETGMANNVRQRTIRMR----SRYNEGADSIPKLKREI------PALLARVHLRGIP 1295
Query: 3871 AISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVL-------SERQIDPV 4029
+ + + D + + G W ++TDGTAL R + I+ V
Sbjct: 1296 GVRRALLK----DTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAV 1351
Query: 4030 RTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 4209
+T+SN + E+ +LGIEA R + E+ G +NYRH +L D + G+LMA++
Sbjct: 1352 KTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVS 1411
Query: 4210 RHGINRQEV-GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV 4386
R GINR + G LMRCSFEETV +LM AA E DPV+GVS N++LG AR GTG FDLV
Sbjct: 1412 RSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLV 1471
Query: 4387 LDVEKCKYGMEIPQNVVMGG--GFYGSFAGS-PSNREFSPAHSPWNSGVTPTYAGAAWSP 4557
L++ + + + V G Y S + N + S A+ P + TP A+
Sbjct: 1472 LNMAALQQAVPQAEAVAPGKDVNVYHSLGSTLQQNIQSSIAYRPRDHDATPFVNNASLFL 1531
Query: 4558 TTGGMSPGAGFSPAGNTDGGASPFN 4632
G G G S A T ++P+N
Sbjct: 1532 RQGF---GGGSSSAPVT--ASAPYN 1551
>gi|21280519|gb|AAM45152.1| RNA polymerase II largest subunit
[Ochromonas danica]
Length = 1064
Score = 908 bits (2346), Expect = 0.0
Identities = 481/1071 (44%), Positives = 671/1071 (61%), Gaps = 52/1071 (4%)
Frame = +1
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
+CPGHFGH+EL + VFH GF+ + ++ILRCVCF+C RLL+D+ P+ E+++ T + +
Sbjct: 1 ECPGHFGHIELHRAVFHCGFIDEVVRILRCVCFHCSRLLLDEKIPKDREVMQIT--DPET 58
Query: 403 RLTMIYDLCKAKSV-CEGAAXXXXX------------------------XXXXXXXXXXX 507
R I+D C V CE A
Sbjct: 59 RFRKIHDRCNRTMVKCEVADSEQMTRFLDEANPDASEARNFIDDIFGADAFQSTQASSSS 118
Query: 508 XXXVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQ--ERKIMLTAERVLEVFQQITDEDI 681
CG QP ++R G+ I + ++ R+ L+A EV ++I+DED+
Sbjct: 119 HNSKRPPCGNVQPKFKREGLTIRITFSSEDSDAPTLGPRQRELSATEAYEVLRKISDEDV 178
Query: 682 LVIGMDPQFARPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRN 861
++G +P+++RP+WM+ T T G ++QDDLT++L++I+KTN L+
Sbjct: 179 EMLGFNPKYSRPDWMVVTVLPVPPPHVRPTV-TEGDVQSQDDLTYQLTNIVKTNLILKDT 237
Query: 862 EANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGN 1041
G + ++ + + LQ HV L DN P TQK GRPLK+++QRLKGKEGR+RGN
Sbjct: 238 IMKGGSKLIIQEYEKALQAHVNALFDNERDDNPRVTQKTGRPLKTVRQRLKGKEGRLRGN 297
Query: 1042 LMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFP-EIVTPFNVDKLQELVNRGDTQ 1218
LMGKRVDFSARTVITADPNL ID VGVPR +L N+D+L+++V RG +
Sbjct: 298 LMGKRVDFSARTVITADPNLSIDQVGVPRLYCFDLDCSCNSDNHINIDELRDMVARGPLE 357
Query: 1219 YPGAK----ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGH 1386
+PGA+ +G R+DLR + D+ L+ G+ VERH++D DI++FNRQP+LHKMS MGH
Sbjct: 358 WPGARYIVRADGVRIDLRKVRSSNDVQLEYGWTVERHLRDDDIVLFNRQPSLHKMSTMGH 417
Query: 1387 RVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANK 1566
R K+L WSTFR+NLSVT+PYNADFDGDEMNLH+PQSL RA+ +E+ MVPR ++TPQ+N+
Sbjct: 418 RAKVLDWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLTARADAQELMMVPRNIVTPQSNR 477
Query: 1567 PVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVF 1746
VMGIVQD L V MTKRDVF+D +M+ +++LPTWDG +P PAILKPKPLWTGKQ+F
Sbjct: 478 NVMGIVQDALLGVTRMTKRDVFVDKEVVMNTMVWLPTWDGNIPAPAILKPKPLWTGKQLF 537
Query: 1747 SLIIPGNVNVLRTHSTHPDSED-SGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGN 1923
S+I P +N H + ++ + P+ ++ D++V+I G LL GIV VG S G+
Sbjct: 538 SMICP-KINYRGRSKNHVEDKNVTDPFNYL---DSEVLIHSGNLLQGIVDKNIVGASGGS 593
Query: 1924 LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQ 2103
++H+ L G+E +F + IQ V+N W++ +++G+ DT+AD T IQ+T+ +AK+
Sbjct: 594 IVHICWLSKGWEETRDFMNQIQAVVNYWMVNTSYSVGVSDTVADATTINAIQSTLNEAKE 653
Query: 2104 DVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXX 2283
V ++ KA L+ PG L ++FE +N++LNDAR G +AQ+SL E N
Sbjct: 654 KVKAIMTKAQEGSLKMMPGKPLMESFEMXINEVLNDARSTVGKAAQRSLKERNAIKGTVM 713
Query: 2284 XXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGL 2463
+NISQ+IACVGQQNV+GKRI +GF RTLPHF KDD G ES+GFVENSYL GL
Sbjct: 714 AGSKGSELNISQIIACVGQQNVQGKRIAYGFNQRTLPHFAKDDLGMESRGFVENSYLRGL 773
Query: 2464 TPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRY 2643
+P EFFFHAMGGREG IDTAVKTAETGYIQRRL+KAME+VM YD T+RNS ++Q Y
Sbjct: 774 SPQEFFFHAMGGREGCIDTAVKTAETGYIQRRLVKAMETVMAQYDTTLRNSRGCVIQFLY 833
Query: 2644 GEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSED------------VV 2787
GEDG+D +E Q + + F + +D+T R +Y V+
Sbjct: 834 GEDGMDAQRIEKQVFDSYTFTASKFREVYYLDVTSEYLGRLSYINTATNERALYMHPLVI 893
Query: 2788 REIQESEDGISLVESEWSQLEEDRRLLRKIF------PRGDAKIVLPCNLQRLIWNAQKI 2949
+ + + L++ E+ QL +DR LR+I D LP N+ RLIWNAQ+
Sbjct: 894 EKCRNDPELRMLLDEEYEQLLKDRGSLREIMGCRGSGSESDPNTYLPVNIDRLIWNAQRQ 953
Query: 2950 FKVDLRKPVNLSPLHVISGVRELSKK-LIIVSGNDEISKQAQYNATLLMNILLRSTLCTK 3126
F++++ +P + P V+ V++L ++ L+IV G+D IS++AQ NATLL IL+RS L TK
Sbjct: 954 FRININEPCPMHPRIVLDAVKKLCQEDLLIVRGSDPISREAQSNATLLFQILVRSKLATK 1013
Query: 3127 NMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMT 3279
+ +L +A +W++G I S F+ ++ PGEM G LAAQS+GEPATQMT
Sbjct: 1014 RVLRDYRLTKDALEWVVGAIVSDFRASVVHPGEMAGVLAAQSIGEPATQMT 1064
>gi|48249473|gb|AAT40981.1| RNA polymerase II largest subunit
[Entamoeba histolytica]
Length = 1636
Score = 895 bits (2313), Expect = 0.0
Identities = 579/1659 (34%), Positives = 886/1659 (52%), Gaps = 93/1659 (5%)
Frame = +1
Query: 43 VSRVQFGILGPEEIKRMSVAHV-EFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNL 219
V +++F +L E+I++M V + E V +GKP LGGL DPR G ++ C TC G
Sbjct: 11 VKQIKFTLLSSEQIRKMGVCKITESTSVSSDGKPVLGGLADPRMGPFEKGEECQTCRGTR 70
Query: 220 TDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSK 399
T+CPGHFG++EL +PV++ ++ L +L+CVC C R+ E +K + +
Sbjct: 71 TECPGHFGYIELTQPVYNAIYMKYILHVLKCVCPICKRIYCHGD-----ERVKNIKSTGE 125
Query: 400 KRLTMIYDLC-KAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGG-CGRYQ----PSYRRV 561
+RL IY+ K C + G Y+ S ++
Sbjct: 126 ERLKEIYEFIHKNYKACGVLSEKKKDHDKHQNNEEEEEQNPCNGPIVDYELPKLKSENKL 185
Query: 562 GIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXX 741
I K N D + R L +F+ +TDED+ V+G DP P++MI T
Sbjct: 186 EIRRKNGIKTNEENDFKPRD-------ALAIFKDMTDEDVRVLGFDPIDCHPKFMIFTLI 238
Query: 742 XXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFH 921
+ G+ +++DDLT ++I N++L+ + + LQ
Sbjct: 239 PVPPPCVRPSIVSEGAKESKDDLTVLYENVITANERLKEENQKCEGVSEYYNKLMELQTI 298
Query: 922 VATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 1101
A + + T +K + KSI++RL K+GR+R NLMGKRVDFSARTVI+ DPNL
Sbjct: 299 CAKISMKNVKLPETMLRK--KNFKSIEERLSSKQGRLRLNLMGKRVDFSARTVISPDPNL 356
Query: 1102 PIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHP 1269
+D VGVP +A+ LTFPE+VT N +KLQ+LV+ G YPGA ++NG L
Sbjct: 357 SMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDYPGAFMLERKNGQTYRLNGSE 416
Query: 1270 RAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYN 1449
+ D+ G V R++ +GD ++FNRQP+LH+MSMMGH+V++LP+STFRMNL T+PYN
Sbjct: 417 KIIDI----GDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYN 472
Query: 1450 ADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 1629
ADFDGDEMNLH+PQ+LE RAE+ + + P Q+ITPQ N P+MGIVQDT C ++TKR+
Sbjct: 473 ADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDTQCGSYLITKRET 532
Query: 1630 FIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSE 1809
FI+ ++L L +DG VP PAILKP P WTGKQVF+ I+P +N R + + +
Sbjct: 533 FIEQLVFYNILQCLDNFDGTVPIPAILKPIPKWTGKQVFTQILP-TINFHRGNWSIKELL 591
Query: 1810 DSGPYKWISPGDTKVIIEHGELLSGIVCSKT-VGKSAGNLLHVVTLELGYEIAANFYSHI 1986
+GP + D+ V I G L G + +K+ GK+ ++ + + G E F++
Sbjct: 592 KNGP----AVADSDVYILDGVHLVGSLRNKSEFGKNRSGIIQTIFKDKGMEATKVFFNKT 647
Query: 1987 QTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNT 2166
Q +N+W++ G T+G+GD + Q+ + I+ + K+K++ V + H+D+++ GNT
Sbjct: 648 QATVNSWILTRGFTVGVGDIVVPQSVHDSIRANVEKSKKEAVKFLSHQHDDEIKVQAGNT 707
Query: 2167 LRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
+ + E+++ +L ++ S KSL + NN NI Q++A VG+Q
Sbjct: 708 MFENLESELGSLLEKLKNECDSITTKSLKKDNNLLAMVDSGSKGSTTNILQMVAFVGKQE 767
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
+ RIPFGF RTLPH+ K+DYG S+GFVENSY+ GL+P EFFFHAM GR+G+IDTAV
Sbjct: 768 INNLRIPFGFYKRTLPHYWKEDYGFVSRGFVENSYVMGLSPQEFFFHAMAGRQGIIDTAV 827
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN---MPTM 2697
KT++TGYIQR+++K ME V YD TVR S MV+ YG DG+D + E Q
Sbjct: 828 KTSDTGYIQRKMVKCMEDVQCKYDRTVRRSSGDMVEFMYGGDGVDALMCETQKYIYCNDS 887
Query: 2698 KPNN---AVFERD-------FRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQL 2847
KP+N ++ + D ++ DL D K L + ED+ ++ S++ +L ++E+ ++
Sbjct: 888 KPDNFEGSINDYDTFKMNELYKWDLNDEK-LSELLDEDIYNKL-FSDEYQTLFDNEFQRI 945
Query: 2848 EEDRRLLRKIFPRG-DAKIVLPCNLQRLIWNAQKIFKVDLRKPV------NLSPLHVISG 3006
++R L + + R D K PC++ ++ A++I V + + NL P +VI
Sbjct: 946 LDERAELYQPWRRSLDLK---PCDIHIVVNFARQIDNVIAARYLPKSQRSNLDPKYVIER 1002
Query: 3007 VRELSKKLIIVSG--NDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLG 3180
L K+L + ND+ ++ +A LL TL +K + L+ E+FD L+
Sbjct: 1003 ENALIKELSSIGAVKNDKFDEERFKDALGSFGKLLHCTLSSKQCLIQHHLSKESFDDLMD 1062
Query: 3181 EIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV 3360
I++ ++++ PGEMVG++AAQS+G PATQMTLNTFH+AG+S+ +VT GVPRLKE++NV
Sbjct: 1063 RIKNIYERSFINPGEMVGSIAAQSIGAPATQMTLNTFHHAGISSASVTEGVPRLKELLNV 1122
Query: 3361 SKTLKTPSLTVFLTGAAAKD-PEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAED 3537
SKT KTPS+ V+LT + + K++ + +T LK + N I++DPD N+VI ED
Sbjct: 1123 SKTPKTPSMNVYLTNDTRESMVDLDKELNKTIPYTKLKDLIDNVEIWFDPDIANSVIEED 1182
Query: 3538 EEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIH-GGFGNDVHTIYT 3714
E+++ F E+ + W +R+ +MV + + R+ D I +
Sbjct: 1183 REFINDFIEVEEIKPEDYCKWTIRLVFGYNKMVSMGVDSDSDILRVKIKELFKDALVIPS 1242
Query: 3715 DDN-----AEKLVFRLRIAGEDKGEAQE-----EQVDK-MEDDVFLRCIEANMLSDLTLQ 3861
D N K+V +R E ++VDK +E + + +L + +
Sbjct: 1243 DSNNIVNGTVKIVVHIRFRVGSISECSNIDHLTDEVDKSVEAVAYYKSKLDELLRTVVIS 1302
Query: 3862 GIPAISKVYMNQPNTDDKKRIIITPEGG-FKSVADWILETDGTALLRVLSERQIDPVRTT 4038
GI I+KV + Q K I++ PE + W++ T+G+ + + +D +T
Sbjct: 1303 GIEGITKVIIPQ---KPKNAIVVDPETKMLRDQLQWVVFTEGSNMAGLAECDNVDFYKTV 1359
Query: 4039 SNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHG 4218
+N++ E F LGIEA R +E E+ +S GSYVN+RHLAL+ DVMT G + R G
Sbjct: 1360 TNNVYETFLYLGIEAGRTQLEAELIKTLS--GSYVNFRHLALMADVMTFTGRIQPFNRMG 1417
Query: 4219 INRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVE 4398
++R G + R SFE+T++ AA +E D + G+S+NI++GQ GTG F ++LD++
Sbjct: 1418 LSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTGAFTVLLDID 1477
Query: 4399 KCK--------YGMEIPQNVVMGGGF---------------------------------- 4452
K + E GF
Sbjct: 1478 SLKASNIDENSFSEEEADKKAFIDGFDVSPIRTHLVMSPTNTNKPKPMGFSPSPVSPRKT 1537
Query: 4453 YGSFA-GSPSNREFSPAHSPWNSGVTPTYAG--AAWSPTTGGMSPGAGFSPAGNTDGGAS 4623
+ FA SP SP SP TP ++ + ++P TG +S A S +S
Sbjct: 1538 HPQFATPSPFITSSSPRSSPMLMQFTPRFSSGPSPYNPATGALSKPAFLSSPMFAGKQSS 1597
Query: 4624 PFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSP 4740
P+N SP LG+ TP++ G+S + SSP
Sbjct: 1598 PYNNPNPSPF-----LGS----TPAFQGISSPFINYSSP 1627
>gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit
[Dictyostelium discoideum]
Length = 757
Score = 883 bits (2281), Expect = 0.0
Identities = 441/765 (57%), Positives = 553/765 (71%), Gaps = 4/765 (0%)
Frame = +1
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 402
+CPGHFGH+ELAKPVFHIGF+ LKILRCVC++C +LL D + + LK N K
Sbjct: 1 ECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQALKIR--NQKH 58
Query: 403 RLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAE 582
RL + D CK K VC GGCG P + + I E
Sbjct: 59 RLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLPKITKEDLKIIVE 118
Query: 583 WKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXX 762
+K +V + + E+K +L+AERVL + ++I DED +G++P +AR +WMI T
Sbjct: 119 FK-DVTDGSIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPV 177
Query: 763 XXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDN 942
S + +DDLTHKL+DI+K N++LQR E NGA AH++ + ++ LQFHVAT VDN
Sbjct: 178 RPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEAIQFLQFHVATYVDN 237
Query: 943 CIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGV 1122
IPGLP A Q+ GRPLKSI+QRLKGKEGRIRGNLMGKRVDFSARTVITADPNL ID VGV
Sbjct: 238 EIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGV 297
Query: 1123 PRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHL 1290
PR+IA NLT+PE VTPFN+DK++EL+ G +++PGAK E+G R DLR+ + +D HL
Sbjct: 298 PRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHL 357
Query: 1291 QPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDE 1470
+ GY+VERH+ DGD+++FNRQP+LHKMSMMGHR+K++P+STFR+NLSVTSPYNADFDGDE
Sbjct: 358 ECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDE 417
Query: 1471 MNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFM 1650
MNLH+PQ+LETRAE+ EI MVPRQ+++PQ+N+PVMGIVQDTL R+ TKRD F++ +
Sbjct: 418 MNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLV 477
Query: 1651 MDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKW 1830
M++LM+LP+WDGKVP PAILKPK LWTGKQ+FSLIIP ++N++R STH D + +
Sbjct: 478 MNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DINLIRFTSTHNDKKPNE---- 532
Query: 1831 ISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWL 2010
S GDT+VIIE ELL+GI+C +++G + G+++HVV E G++ F QTV+N WL
Sbjct: 533 CSAGDTRVIIERSELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWL 592
Query: 2011 IREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENK 2190
I G T+GIGDTIAD AT + TI AK V ++I KA N E PG ++ +TFE K
Sbjct: 593 INRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQK 652
Query: 2191 VNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPF 2370
VNQ+LN ARD GSSAQ SLSE NN INISQ++ACVGQQNVEGKRIPF
Sbjct: 653 VNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPF 712
Query: 2371 GFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 2505
GF+ RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGRE
Sbjct: 713 GFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 757
>gi|6624239|dbj|BAA88484.1| RNA polymerase II largest subunit
[Eptatretus burgeri]
Length = 595
Score = 845 bits (2183), Expect = 0.0
Identities = 408/595 (68%), Positives = 497/595 (82%)
Frame = +1
Query: 1474 NLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMM 1653
NLHLPQSLET+AEI E+AMVPR ++TPQ+N+PVMGIVQDTL AVR TKRDVF+D +M
Sbjct: 1 NLHLPQSLETKAEIHELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRGTVM 60
Query: 1654 DLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI 1833
+LLM L TW+GK+PQPAILKP+PLWTGKQVFSLIIPG +N +RTHSTHPD+ED+GPYK I
Sbjct: 61 NLLMCLSTWNGKMPQPAILKPQPLWTGKQVFSLIIPGRINCIRTHSTHPDNEDAGPYKHI 120
Query: 1834 SPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLI 2013
SPGDTKV++E GEL+ GI+C +++G SAG+L+H+ LE+G+++ FYS+IQTVIN WL+
Sbjct: 121 SPGDTKVVVEDGELIMGILCKRSLGTSAGSLVHICFLEMGHDVTRLFYSNIQTVINNWLL 180
Query: 2014 REGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKV 2193
EGH+IGIGD+IAD TY DIQNTI+KAK DV++VIEKAHN++LEPTPGNTLRQTFEN+V
Sbjct: 181 IEGHSIGIGDSIADAKTYQDIQNTIKKAKHDVIEVIEKAHNNELEPTPGNTLRQTFENQV 240
Query: 2194 NQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFG 2373
N+ILNDARD+TGSSAQKSLSE+NNF INISQVIA VGQQNVEGKRIPFG
Sbjct: 241 NRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFG 300
Query: 2374 FRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ 2553
F+HRTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ
Sbjct: 301 FKHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ 360
Query: 2554 RRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFR 2733
RRLIK+MESVMV YDGTVRN+ Q++QLRYGEDGL VE Q++ T+KP+N FE+ F+
Sbjct: 361 RRLIKSMESVMVKYDGTVRNATNQVIQLRYGEDGLAAEHVEFQSLATLKPSNKAFEKKFK 420
Query: 2734 MDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPC 2913
D T+ + L + EDVV E+ S + +E E+ Q+ +DR +LR +FP GD+K+VLPC
Sbjct: 421 FDYTNERALLRCLHEDVVSEVMSSAHIQNCLEREFEQIRDDREVLRAVFPTGDSKVVLPC 480
Query: 2914 NLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLM 3093
NLQR+IWNAQKIF ++ R +L+PL V+ GV +L++KL IV G+D IS+QAQ NATLL
Sbjct: 481 NLQRMIWNAQKIFHINTRSSTDLNPLRVVEGVNDLTQKLQIVKGDDPISRQAQQNATLLF 540
Query: 3094 NILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLG 3258
N +R+TLCT+ + + +L+SEAF+WLLGEIE++F AI PGEMVGALAAQSLG
Sbjct: 541 NCHVRATLCTRRLAEEHRLSSEAFEWLLGEIEAKFNHAIVHPGEMVGALAAQSLG 595
>gi|6624241|dbj|BAA88485.1| RNA polymerase II largest subunit
[Lethenteron reissneri]
Length = 595
Score = 840 bits (2171), Expect = 0.0
Identities = 401/595 (67%), Positives = 499/595 (83%)
Frame = +1
Query: 1474 NLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMM 1653
NLHLPQSLETRAEI+E+AMVPR +ITPQ+N+PVMGIVQDTL AVR TKRDVF+D +M
Sbjct: 1 NLHLPQSLETRAEIQELAMVPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRAEVM 60
Query: 1654 DLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWI 1833
LLMYL TW+GK+PQPA+LKP+PLWTGKQVFSL+IPG +N +RTHSTHPD+ED+GPY+ I
Sbjct: 61 TLLMYLSTWNGKMPQPAVLKPQPLWTGKQVFSLVIPGQINCVRTHSTHPDNEDTGPYRHI 120
Query: 1834 SPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLI 2013
SPGDTKVI+E+GEL+ GI+C +++G SAG+L+H+V LE+G++ FYS+IQTV+N WL+
Sbjct: 121 SPGDTKVIVENGELIMGILCKRSLGTSAGSLVHIVFLEMGHDTTRLFYSNIQTVVNNWLL 180
Query: 2014 REGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKV 2193
EGH+IGIGD+IAD TY DIQNTI+KAKQDV++VIEKAHN++LEPTPGNTLRQTFEN+V
Sbjct: 181 IEGHSIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQV 240
Query: 2194 NQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFG 2373
N+ILNDARD+TGSSAQKSLSE+NNF INISQVIA VGQQNVEGKRIPFG
Sbjct: 241 NRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFG 300
Query: 2374 FRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQ 2553
F+HRTLPHFIKDDYGPES+GFVENSYLAGLTP+EFFFHAMGGREGLIDTAVKTAETGYIQ
Sbjct: 301 FKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQ 360
Query: 2554 RRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFR 2733
RRLIK+MESVMV YDGTVRN + Q++QLRYGEDGL VE QN+ T+KP++ FE+ ++
Sbjct: 361 RRLIKSMESVMVKYDGTVRNGINQVIQLRYGEDGLAAEHVEFQNLSTLKPSDKAFEKKYK 420
Query: 2734 MDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPC 2913
D + + +R+ E+VV +I + + ++ E+ ++ DR LR +FP GD+K+VLPC
Sbjct: 421 FDFANERAMRRCLQEEVVNDIMSNAHIQNELDKEFDRVRSDRDTLRSVFPTGDSKVVLPC 480
Query: 2914 NLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLM 3093
NL R+IWNAQKIF ++ R+P +++PL +I GV++LSK+L+IV G D +S+QAQ NATLL+
Sbjct: 481 NLMRMIWNAQKIFHINTRQPTDINPLRIIEGVQDLSKRLMIVKGEDPLSRQAQENATLLL 540
Query: 3094 NILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLG 3258
N +RSTLC + + + +L+ +AF+WLLGEIE+RF AI PGEMVGALAAQSLG
Sbjct: 541 NCHVRSTLCARRVTEEFRLSLQAFEWLLGEIEARFNYAIVHPGEMVGALAAQSLG 595
>gi|38232433|gb|AAR15052.1| RNA polymerase II largest subunit
[Peripatus sp. Per3]
Length = 515
Score = 814 bits (2102), Expect = 0.0
Identities = 384/515 (74%), Positives = 449/515 (86%)
Frame = +1
Query: 1381 GHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQA 1560
GH+VKI PW TFR+ LSVT+PYNADFDGDEMNLH+PQS+ETRAE+ E+ MVPRQ+ITPQ+
Sbjct: 1 GHKVKIXPWXTFRLXLSVTTPYNADFDGDEMNLHVPQSMETRAEVTEMIMVPRQIITPQS 60
Query: 1561 NKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQ 1740
N+PVMGIVQDTL AVR MTKRDVF++ MM+LLM+LP+WDGK+PQPAILKPKPLWTGKQ
Sbjct: 61 NRPVMGIVQDTLTAVRKMTKRDVFLEKEEMMNLLMWLPSWDGKIPQPAILKPKPLWTGKQ 120
Query: 1741 VFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAG 1920
+FSL+IPGNVN++RTHSTHPD+ED GPYKWISPGDTKV+IEHG+L+SGI+C KT+G S+G
Sbjct: 121 IFSLVIPGNVNLIRTHSTHPDNEDDGPYKWISPGDTKVLIEHGDLISGILCKKTLGTSSG 180
Query: 1921 NLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAK 2100
+L+H+V LELG+E+A Y +IQTV+N WL+ EGHTIGIGDTIAD TY+DIQ++I+KAK
Sbjct: 181 SLVHIVMLELGHEVAGQLYGNIQTVVNNWLLIEGHTIGIGDTIADPQTYIDIQDSIKKAK 240
Query: 2101 QDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXX 2280
QDV++VIEKAHND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SAQKSLSEFNNF
Sbjct: 241 QDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMV 300
Query: 2281 XXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 2460
INISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPES+GFVENSYLAG
Sbjct: 301 VSGAKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAG 360
Query: 2461 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLR 2640
LTPSEFFFH+MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV YDGTVRNS +VQLR
Sbjct: 361 LTPSEFFFHSMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVAYDGTVRNSQQYLVQLR 420
Query: 2641 YGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGIS 2820
YGEDGLD + VE Q+MP +KP+N FE+ F+ D+ + + LR+N +ED+V+E+ S IS
Sbjct: 421 YGEDGLDAVHVEFQSMPNLKPSNKNFEKKFKFDINNERELRRNLNEDIVKELLGSAHAIS 480
Query: 2821 LVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQR 2925
+E EW QL DR LR FP GD+K+VLPCNLQR
Sbjct: 481 EIEKEWEQLRNDRENLRSTFPTGDSKVVLPCNLQR 515
>gi|31127054|gb|AAC03142.2| RNA polymerase II largest subunit [Triops
longicaudatus]
Length = 543
Score = 803 bits (2074), Expect = 0.0
Identities = 381/543 (70%), Positives = 459/543 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TLCA R MTKRDVF++ MM LLM+LPTWDGKVPQPAILKPKPLWTGKQ+F+LIIPGNV
Sbjct: 1 TLCAARKMTKRDVFLEKDQMMTLLMFLPTWDGKVPQPAILKPKPLWTGKQLFTLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTH+THPD EDSGPYKWISPGDTKV++EHG+L+ GI+C KT+G SAG+LLH++ LEL
Sbjct: 61 NMIRTHATHPDDEDSGPYKWISPGDTKVMVEHGDLIMGILCKKTLGASAGSLLHIIFLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+EI FY +IQTV+N WL+ EGH+IGIGDTIAD TY DIQ TIRKAK+DV++VI+KA
Sbjct: 121 GHEICGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYYDIQETIRKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLSAEM 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+K +N+ F + FR D ++ ++LR+ +SEDV R++ S + IS +++EW QL
Sbjct: 361 VEFQSLPTIKLSNSAFLKKFRFDPSNERYLRRIFSEDVTRDLMTSGEVISELDAEWEQLS 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 3030
DR LR+IFP G+ K+VLPCNLQR+IWN QKIF ++ R P +LSP+ V+ GVR+L +K
Sbjct: 421 RDRDALRQIFPTGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPVRVVQGVRDLLEKC 480
Query: 3031 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 3210
++V G D++SKQA NATLL L+RSTLCTK + + +L+SEAF+WL+GEIE+RFQQA
Sbjct: 481 VVVKGEDKLSKQANMNATLLFQCLVRSTLCTKRVAEEYRLSSEAFEWLIGEIETRFQQAQ 540
Query: 3211 AQP 3219
AQP
Sbjct: 541 AQP 543
>gi|31127040|gb|AAF26661.2| RNA polymerase II largest subunit
[Tomocerus sp. jcrjws1]
Length = 543
Score = 788 bits (2036), Expect = 0.0
Identities = 372/543 (68%), Positives = 457/543 (83%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL VR MTKRDVF+D MM+LLM+LP WDGK+PQP I KPKPLWTGKQ+F+LIIPGNV
Sbjct: 1 TLTGVRKMTKRDVFLDKEQMMNLLMHLPIWDGKMPQPTIYKPKPLWTGKQLFTLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTH+THPD ED GPYKWISPGDTKV++EHG+L+ GI+C KT+G SAG+LLH+ +EL
Sbjct: 61 NLIRTHATHPDDEDDGPYKWISPGDTKVMVEHGQLIMGILCKKTLGTSAGSLLHICMVEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+A FY +IQTV+N WL+ EGH+IGIGDTIAD +TYL+IQ TI+KAK+DV++VI+KA
Sbjct: 121 GHEVAGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPSTYLEIQKTIKKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVM++YDGTVRNS+ Q++QLRYGEDGLDG+
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMIHYDGTVRNSVGQLIQLRYGEDGLDGVQ 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+K +N FE F+ D T+ ++LR+ ++EDV+R+I S + IS +E EW L+
Sbjct: 361 VEFQSLPTVKLSNRSFESKFKFDPTNERYLRRVFTEDVMRDIMGSGEVISAIEKEWEALQ 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 3030
+DR +LR+IFP G+ K+VLPCNLQR+IWN QKIF ++ R P +L+P+ VI GV +L KK
Sbjct: 421 KDRAVLRQIFPTGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLNPVRVIEGVEDLLKKC 480
Query: 3031 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 3210
+IV G D +SKQA NATLL L+RSTLCTK + + +L+SEAF+WL+GE+E+RFQQA
Sbjct: 481 VIVVGEDRLSKQANANATLLFQCLVRSTLCTKRVAEEFRLSSEAFEWLIGEVETRFQQAQ 540
Query: 3211 AQP 3219
QP
Sbjct: 541 VQP 543
>gi|99899|pir||S14183 DNA-directed RNA polymerase (EC 2.7.7.6) largest
chain (isoform C) - soybean (fragment)
gi|18736|emb|CAA36736.1| DNA-directed RNA polymerase [Glycine max]
Length = 977
Score = 772 bits (1994), Expect = 0.0
Identities = 413/819 (50%), Positives = 556/819 (67%), Gaps = 40/819 (4%)
Frame = +1
Query: 2410 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 2589
D+GPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +M+
Sbjct: 1 DHGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIML 60
Query: 2590 NYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKN 2769
YDGTVRNSL ++Q YGEDG+D +W+E Q + T+K F+R FR + + +
Sbjct: 61 KYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDEENWKPNY 120
Query: 2770 YSEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQK 2946
++ V +++ + ++ E+E +LE DR L +I GD + LP NL+RLIWNAQK
Sbjct: 121 MLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQK 180
Query: 2947 IFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTK 3126
FKVD R+P ++ P+ ++ + +L ++L +V G D +S++AQ NATLL NILLRST +K
Sbjct: 181 TFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDALSQEAQKNATLLFNILLRSTFASK 240
Query: 3127 NMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGV 3306
+ + +L+ E+F+W++GEIESRF Q++ PGEM+G +AAQS+GEPATQMTLNTFH+AGV
Sbjct: 241 RVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNTFHFAGV 300
Query: 3307 SAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCN 3486
SAKNVTLGVPRL+E+INV+K++KTPSL+V+L A K E+AK V C LE+TTL+ VT
Sbjct: 301 SAKNVTLGVPRLRELINVAKSIKTPSLSVYLKPDAGKTKERAKTVQCALEYTTLRSVTQA 360
Query: 3487 TAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD--LSRTSPWLLRIELDRKRMVDKKLTMEM 3660
T ++YDPDP +T+I ED ++V +YEMPD + L + SPW +R+EL+R+ MVDKKL+M
Sbjct: 361 TEVWYDPDPMSTIIEEDVDFVMSYYEMPDEEVALEKISPWFVRVELNREMMVDKKLSMAD 420
Query: 3661 IADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGED--KGEAQEEQVDKMEDDVFLRCIEA 3834
IA +I+ F +D+ I+ DDNAEKL+ R+RI +D KGE Q+E EDDVFL+ IE
Sbjct: 421 IAQKINLEFDDDLSCIFNDDNAEKLILRIRIMNDDAPKGEVQDESA---EDDVFLKKIET 477
Query: 3835 NMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSER 4014
NML+++TL+GIP I+KV++ GFKS +W+L+T+G LL V+
Sbjct: 478 NMLTEMTLRGIPDINKVFIKNAKVQK-----FDENEGFKSNGEWMLDTEGVNLLAVMCHE 532
Query: 4015 QIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGH 4194
+D RTTSN + E+ EVLGIEAVR+++ E+ VISFDGSYVNYRHLA+LC+ MT +GH
Sbjct: 533 DVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRIVISFDGSYVNYRHLAILCETMTYRGH 592
Query: 4195 LMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGC 4374
LMAITRHGINR + G +MRCSFEETVDIL++AA +AE D ++GV+ENI+LGQLA GTG
Sbjct: 593 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAAYAETDSLRGVTENIILGQLAPIGTGQ 652
Query: 4375 FDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG----------------------SPSN-- 4482
L L+ K +E+ G +G +G SPS+
Sbjct: 653 CALYLNDGMLKNAIELQLPSYTDGLDFGIMSGATPYHEGTMMSPSYLLSPNLRLSPSSDA 712
Query: 4483 --------REFSPAHSPWNSGVTPTYAGAA--WSPTTGGMSP-GAGFSPAGNTDGGASPF 4629
FSP+ SP S +P Y+ ++ +SPT+ G SP G+SP T +SP
Sbjct: 713 QFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP- 771
Query: 4630 NEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
G+SP SP A SP +PSY SP YSP+SP +
Sbjct: 772 ---GYSPTSP-----AYSPTSPSYSPTSP-AYSPTSPAY 801
Score = 48.5 bits (114), Expect = 0.002
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMS-PGAGFSPAGNTDGGASPFNEGGWS 4647
SP+ SPA+SP + +PT A+SPT+ S +SP + SP +S
Sbjct: 798 SPAYSSTSPAYSPTSPSYSPT--SPAYSPTSPSYSLTSPSYSPTSPSYSPTSP----SYS 851
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP A SP +PSY SP YSP+SP +
Sbjct: 852 PTSP-----AYSPTSPSYSPTSPS-YSPTSPSY 878
Score = 48.5 bits (114), Expect = 0.002
Identities = 34/95 (35%), Positives = 46/95 (47%), Gaps = 5/95 (5%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTY-----AGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNE 4635
SPS SPA+SP + +PT +++P + SP +SP+ SP
Sbjct: 847 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSP--- 903
Query: 4636 GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSP 4740
+SP SP + SP +PSY SP YSPSSP
Sbjct: 904 -NYSPTSP-----SYSPTSPSYSPSSP-TYSPSSP 931
Score = 47.0 bits (110), Expect = 0.005
Identities = 33/92 (35%), Positives = 48/92 (51%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPS SP+++P ++ +P+ A + SP SP +SP + SP +SP
Sbjct: 868 SPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSP--NYSPTSPSYSPTSP----SYSP 921
Query: 4651 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
+SP SP +P G+SP YSP+SPQF
Sbjct: 922 SSP-----TYSPSSPYNSGVSPD-YSPTSPQF 947
Score = 46.6 bits (109), Expect = 0.007
Identities = 35/95 (36%), Positives = 47/95 (48%), Gaps = 3/95 (3%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGG-MSPGAGFSPAGNTDGGASPFNEGGWS 4647
SP SPA+SP + +PT A+SPT+ S +SP + SP +S
Sbjct: 770 SPGYSPTSPAYSPTSPSYSPT--SPAYSPTSPAYSSTSPAYSPTSPSYSPTSP----AYS 823
Query: 4648 PASPGDPL--GALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP L + SP +PSY SP YSP+SP +
Sbjct: 824 PTSPSYSLTSPSYSPTSPSYSPTSPS-YSPTSPAY 857
Score = 42.4 bits (98), Expect = 0.13
Identities = 26/62 (41%), Positives = 37/62 (58%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 4650
SPS+ +SP+ SP+NSGV+P Y SPT+ SP AG+SP ++ G+SP
Sbjct: 920 SPSSPTYSPS-SPYNSGVSPDY-----SPTSPQFSPSAGYSP-----------SQPGYSP 962
Query: 4651 AS 4656
+S
Sbjct: 963 SS 964
>gi|45501363|gb|AAH67295.1| Unknown (protein for MGC:75453) [Homo
sapiens]
Length = 566
Score = 765 bits (1976), Expect = 0.0
Identities = 365/548 (66%), Positives = 444/548 (80%), Gaps = 8/548 (1%)
Frame = +1
Query: 19 DFQAPLRIVSRVQFGILGPEEIKRMSVAH--VEFPEVYENGKPKLGGLMDPRQGVIDRRG 192
D PLR + RVQFG+L P+E+KRMSV +++PE E G+PKLGGLMDPRQGVI+R G
Sbjct: 10 DSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTG 69
Query: 193 RCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI 372
RC TCAGN+T+CPGHFGH+ELAKPVFH+GFL KT+K+LRCVCF+C +LL+D + P++ +I
Sbjct: 70 RCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDI 129
Query: 373 LKKTGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAG--GCGRYQP 546
L K+ KKRLT +YDLCK K++CEG G GCGRYQP
Sbjct: 130 LAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 547 SYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 726
RR G+++ AEWK +VNED+QE+KI+L+ ERV E+F++I+DE+ V+GM+P++ARPEWM
Sbjct: 190 RIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 727 ICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 906
I T GSA+NQDDLTHKL+DI+K N QL+RNE NGAAAHV+ +DV+
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 907 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LLQFHVAT+VDN +PGLP A QK GRPLKS+KQRLKGKEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVD 1254
DPNL ID VGVPR+IA N+TF EIVTPFN+D+LQELV RG++QYPGAK +NG R+D
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 1255 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
LR+HP+ +DLHLQ GY+VERHM DGDI++FNRQPTLHKMSMMGHRV+ILPWSTFR+NLSV
Sbjct: 429 LRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 488
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
T+PYNADFDGDEMNLHLPQSLETRAEI+E+AMVPR ++TPQ+N+PVMGIVQDTL AVR
Sbjct: 489 TTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKF 548
Query: 1615 TKRDVFID 1638
TKRDVF++
Sbjct: 549 TKRDVFLE 556
>gi|13274162|emb|CAC33859.1| RNA polymerase II largest subunit [Nosema
tyriae]
Length = 986
Score = 747 bits (1928), Expect = 0.0
Identities = 442/1058 (41%), Positives = 614/1058 (57%), Gaps = 44/1058 (4%)
Frame = +1
Query: 241 GHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIY 420
GH+EL+KP+FH+G+++K KIL C+CFYC RL + + N K L I+
Sbjct: 1 GHIELSKPMFHVGYISKIKKILECICFYCSRLKVSRK-------------NLKADLNAIW 47
Query: 421 DLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVN 600
+ K K VCEG GCG QP ++ G+++ A K
Sbjct: 48 AVSKGKMVCEGELTEEGF----------------NGCGNKQPVIKKEGLNLVAFMK---G 88
Query: 601 EDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXT 780
ED E K++L E+V +F++I+DEDI V+G D ++ PEW+I T
Sbjct: 89 EDNSEGKVILNGEKVHSIFKKISDEDIEVLGFDLAYSTPEWLILTVLLVPPPSVRPSIVM 148
Query: 781 FGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLP 960
G + +DDLTHKLSDIIK+N L++ E GA H++ D +LLQFHVATL+DN I G P
Sbjct: 149 EGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQP 208
Query: 961 TATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQ 1140
A QK GRPLKSI RLKGKEGR+RGNLMGKRVDFSAR+VITAD N+ ++ VGVP +A+
Sbjct: 209 QALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAK 268
Query: 1141 NLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHPRAADLHLQPGYRV 1308
TFPE +TPFN++KL++LV G + PGA + +G R+DL ++ D+ L+ +
Sbjct: 269 IHTFPEKITPFNIEKLEKLVANGPNECPGANYVIRTDGQRIDLNFN--RGDIKLEEVILL 326
Query: 1309 ERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLP 1488
R +I+ + L GH FR+ + YNADFDGDEMNLH+P
Sbjct: 327 -RDTCRMEILFYLIDDLLFINVYDGH--SSCDEEDFRL-IECHFSYNADFDGDEMNLHMP 382
Query: 1489 QSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMY 1668
Q+ + AE+EEI MVP+Q++ PQ+NKPVMGIVQDTL +R T RD F D MM +L
Sbjct: 383 QNYNSIAELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYS 442
Query: 1669 LP--------------------------TWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
+ + G + +PAI KPK LWTGKQ+ S I P
Sbjct: 443 IDFEKYYDIGLDSVIKKGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFIFP--- 499
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
NV +S++ E+ + DT V+I GE++SGI+ K VG + G L+H++ +
Sbjct: 500 NVYYKNSSNESRENDLE----NVSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDF 555
Query: 1951 GYEIAANFYSHIQTVINAWLIR-EGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEK 2127
G F IQ +I +L+ ++GIGDT+AD T ++ I K+K V ++I K
Sbjct: 556 GCSRVTLFIDDIQKIITKFLMNIHVSSMGIGDTVADSDTLKYVKQAIEKSKDSVDEIIRK 615
Query: 2128 AHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXI 2307
A N+ L+ PG T++++FE++VN +LN ARD +G+S QKSL++ NN I
Sbjct: 616 AQNNRLDRLPGMTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFI 675
Query: 2308 NISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFH 2487
NISQV ACVGQQNVEGKRIPFGF +RTLPHF K+DY +S+GFVENSYL+GL+P EFFFH
Sbjct: 676 NISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFH 735
Query: 2488 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGM 2667
AMGGREGLIDTA+KTAETGYIQRRL+KAME V DG+VR + + Q YGEDG D
Sbjct: 736 AMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFDAT 795
Query: 2668 WVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLV---ESEW 2838
++E Q + T A F F DLT ++K D + ++ S+ + + E +W
Sbjct: 796 FLEMQRVQTTNFKEAHFIDMFSTDLT--YAVKKGAVSDQIYKLLCSDIELQKILYDEYDW 853
Query: 2839 ---------SQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSP 2988
+ +E + ++ +++ + PCNLQR+I+NA +F + PV ++SP
Sbjct: 854 LVKHVFDSYNPEDESQNVVNRLYRN---VLASPCNLQRIIYNAISMF----QSPVGDVSP 906
Query: 2989 LHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFD 3168
++ ++L G +E L+N+L+R+ L KN+ T KL+ F+
Sbjct: 907 YFILETTKDL-------GGTNE-----------LLNVLIRTHLSVKNILTVYKLDLNGFN 948
Query: 3169 WLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTL 3282
W++ I+ + + EMVG LAAQS+GEPATQMTL
Sbjct: 949 WVIEAIKDKVMSSRVAHNEMVGTLAAQSVGEPATQMTL 986
>gi|50293727|ref|XP_449275.1| unnamed protein product [Candida
glabrata]
gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata
CBS138]
Length = 1459
Score = 721 bits (1861), Expect = 0.0
Identities = 503/1517 (33%), Positives = 766/1517 (50%), Gaps = 59/1517 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYE---NGKPKLGGLMDPRQGVIDRRGR 195
+ P RI S ++F L P +I S + ++++ N PK GG +DPR GV
Sbjct: 8 ETPKRI-SGLEFSALSPADIVAQSELEISSRDLFDLENNRSPKEGGALDPRMGVSASSME 66
Query: 196 CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR-VLEI 372
C TC GNL C GHFGH++LA PVFH+G+ T++IL+ +C C +L+ + R L
Sbjct: 67 CTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKTCSAILLSEQDKRHFLSE 126
Query: 373 LKKTGTNSKKRLTM---IYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQ 543
L++ G ++ +R+ + + D CK + C +
Sbjct: 127 LRRPGVDNLRRMALLKKVLDQCKKQRRCLHCGALNGVVKKAAAGAGTASLKI------IH 180
Query: 544 PSYRRVGIDINAE-------WKKNVNEDTQERKIM------LTAERVLEVFQQITDEDIL 684
++R VG E WK+ ++ + + + + L + L +F+QI ED
Sbjct: 181 DTFRWVGKKSTPEKDKWIGDWKEVLSHNPELERYVKRATDDLNPLKTLNLFKQIASEDCE 240
Query: 685 VIGMDP--QFARPEWMICTXXXXXXXXXXXXXXTFGS-AKNQDDLTHKLSDIIKTNQQLQ 855
++G+D + RPE I S A N+DDLT KL++I+ T+ ++
Sbjct: 241 LLGIDATNKAGRPETYIWRYIPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIK 300
Query: 856 RNEANGAAAHVLTDDVRLLQFHVATLV--DNCIPGLPTATQKGG---RPLKSIKQRLKGK 1020
G + + + + LQ VA + D+ P + + GG +P++ QRLKGK
Sbjct: 301 AGIEKGISINNMMEHWDYLQMTVAMYINSDSINPAMLPGSSTGGGKVKPIRGFCQRLKGK 360
Query: 1021 EGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELV 1200
+GR RGNL GKRVDFS RTVI+ DPNL ID V VP+ +A+ LTFPE VT +N+ KL++LV
Sbjct: 361 QGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNIKKLRQLV 420
Query: 1201 NRGDTQYPGA-----KENGARVDLRYHPR-AADLHLQPGYRVERHMKDGDIIVFNRQPTL 1362
G +PGA K AR +LRY R +LQ G VERH++DGD+++FNRQP+L
Sbjct: 421 QNGPNVHPGANYLLKKNEEARRNLRYGDRQKLANNLQYGDVVERHLEDGDVVLFNRQPSL 480
Query: 1363 HKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQ 1542
H++S++ H KI PW TFR+N V +PYNADFDGDEMNLH+PQ+ E RAE + V
Sbjct: 481 HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN 540
Query: 1543 LITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGK----VPQPAIL 1710
L+TP++ +P++ QD + +++ +D F D + LL + DG +P PAI+
Sbjct: 541 LLTPKSGEPIIAATQDFITGSYLISHKDSFFDKASLTQLLSMMS--DGSLQFDIPPPAIM 598
Query: 1711 KPKPLWTGKQVFSLII------PGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGE 1872
KP LWTGKQVFSL+I P +N+ + + + +S D VI+ +
Sbjct: 599 KPCYLWTGKQVFSLLIKPNKNSPVKINLDAKNKVYIPPKQKHYPNEMSQNDGFVIVRGSQ 658
Query: 1873 LLSGIVCSKTVGK-SAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGD-T 2046
+LSG++ +G ++ + + + G + AA+ + + + +L G +IGI D T
Sbjct: 659 ILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAASAMNRMAKLCARYLGNRGFSIGISDVT 718
Query: 2047 IADQATYLDIQNTIRKAKQDVVDV--------IEKAHNDDLEPTPGNTLRQTFENKVNQI 2202
AD +++ K+D+V++ I+ + LE PG QT E K+ +
Sbjct: 719 PADD---------LKQKKEDLVEIAYAKCDELIDLYNKGKLETQPGCNEEQTLEAKIGGL 769
Query: 2203 LNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRH 2382
L+ R+ G L N +N+SQ++A VGQQ + G R+P GF+
Sbjct: 770 LSKVREEVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQD 829
Query: 2383 RTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRL 2562
R+LPHF K+ P+SKGFV NS+ +GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL
Sbjct: 830 RSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRL 889
Query: 2563 IKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDL 2742
+K++E + YD TVR S +VQ YG DGLD + +E P + + +
Sbjct: 890 MKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLDPLEMEGNAQPVNFNRSWDHAYNITFNN 949
Query: 2743 TDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQ 2922
TD L + V ++ E + ++ + + L + D+ +
Sbjct: 950 TDRGLLPYEIKKTVDNILKPLEKRLIRYDTLGRPVSAEDDKLDDYVDQHDS--------E 1001
Query: 2923 RLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVS---GNDEISKQAQYNATLLM 3093
RL + + + F D K L+ L G+ +L KK + N+ I Q++ T L
Sbjct: 1002 RLFYASLREFMTD--KAKKLAKLRKSRGLPKLIKKSELEGYDPENEHIDAIVQHSITQLY 1059
Query: 3094 NILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQ 3273
++ +A L S++ +A +PG VGA+ AQS+GEP TQ
Sbjct: 1060 -----------------RITEDAVQKFLEIAISKYHRAKVEPGTAVGAIGAQSIGEPGTQ 1102
Query: 3274 MTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKL 3453
MTL TFH+AGV++ NVTLGVPR+KEIIN SK + TP + L D A+ V ++
Sbjct: 1103 MTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVN--NNDERAARVVKGRI 1160
Query: 3454 EHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRM 3633
E T L V YY D V E+ ++ + +++L+
Sbjct: 1161 EKTLLSDV-----CYYIQD----VYKENMAYLQV-----------------KVDLNTIDK 1194
Query: 3634 VDKKLTMEMIADRIHGGFGNDVHTI-YTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDD 3810
+ +LT+E IA I + T T +K+ + G + + E+D
Sbjct: 1195 LQLELTIEDIAIAITRAPKLKIQTSDVTVLGKDKIAINVLPEGFGSKTSSTSLKEPTEND 1254
Query: 3811 VFLRC-IEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGT 3987
VF R L + ++G+ I++ +N DD KR ++ G + V + TDG
Sbjct: 1255 VFYRMQTLRRALPSIMVKGLNDIARAVIN--IRDDGKRELLVEGYGLRDV----MCTDG- 1307
Query: 3988 ALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALL 4167
+ +T +N + EIF VLGIEA R +I E+D +S G V+ RH+ LL
Sbjct: 1308 ----------VIGAKTATNHVLEIFNVLGIEAARASIIGEIDYTMSNHGMSVDPRHIQLL 1357
Query: 4168 CDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLG 4347
DVMT KG ++ ITR G+++ L SFE+T D L +AA + ++D V+GVSE I+LG
Sbjct: 1358 GDVMTFKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILG 1417
Query: 4348 QLARCGTGCFDLVLDVE 4398
Q GTG F +V + +
Sbjct: 1418 QTMSIGTGSFKVVKNTD 1434
>gi|50426995|ref|XP_462102.1| unnamed protein product [Debaryomyces
hansenii]
gi|49657772|emb|CAG90588.1| unnamed protein product [Debaryomyces
hansenii CBS767]
Length = 1457
Score = 713 bits (1841), Expect = 0.0
Identities = 501/1533 (32%), Positives = 770/1533 (49%), Gaps = 64/1533 (4%)
Frame = +1
Query: 37 RIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGK---PKLGGLMDPRQGVIDRRGRCMTC 207
+ + ++FG L ++I S V ++Y+ K PK GG +D + G+ C TC
Sbjct: 11 KCIKGIEFGALSAKDIIAQSEVEVHTRDLYDLEKGRIPKDGGALDTKMGISSNANECATC 70
Query: 208 AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR-VLEILKKT 384
GNL C GHFGH++LA PVFH+G+ T+++L+C+C C +L+D+ R L L++
Sbjct: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQTKRSFLNDLRRP 130
Query: 385 GTNSKKRLTMIYDL---CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYR 555
++ +R+ ++ L CK + C + ++R
Sbjct: 131 HIDNLRRMKILKKLLEQCKKQRRCLNCNHVNGVVKKAASGAGPAALKIV------HDTFR 184
Query: 556 RVGIDINAE---WKKNVNE----DTQERKIM------LTAERVLEVFQQITDEDILVIGM 696
+G E W K +E + + K + L +VL +F+QI+ D ++G+
Sbjct: 185 WIGKKATPEKDLWDKEFDEVFLRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGI 244
Query: 697 DP-QFARPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANG 873
D + RPE M + N+DDLT KL++I+ T+ ++ G
Sbjct: 245 DSARGGRPE-MYIWRYLPAPPVCIRPSVMMDAQSNEDDLTIKLTEIVWTSSLIKAGIEKG 303
Query: 874 AAAHVLTDDVRLLQFHVATLV--DNCIPGLPTAT---QKGGRPLKSIKQRLKGKEGRIRG 1038
+ + L + LQ VA + D+ P L ++ K +P++ QRLKGK+GR RG
Sbjct: 304 ISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRG 363
Query: 1039 NLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQ 1218
NL GKRVDFS RTVI+ DPNL ID V VP +A+ LT+PE T +N KLQ+L+ G
Sbjct: 364 NLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNV 423
Query: 1219 YPGA----KENG-ARVDLRYHPR---AADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMS 1374
+PGA K+N A+ +LR+ R A +LH+ G VERH++DGDI++FNRQP+LH++S
Sbjct: 424 HPGANYLLKQNELAKRNLRFGDRVKLAKNLHI--GDVVERHIEDGDIVLFNRQPSLHRLS 481
Query: 1375 MMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITP 1554
++ H KI PW TFR+N V +PYNADFDGDEMN+H+PQ+ E RAE + V L+TP
Sbjct: 482 ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTP 541
Query: 1555 QANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGK--VPQPAILKPKPLW 1728
++ +P++ QD + +++ +D F D ++ LL + D + +P PAI KP LW
Sbjct: 542 KSGEPIIAATQDFITGSYLVSHKDSFFDRASLVQLLCMMSDADIQFDIPPPAIFKPVMLW 601
Query: 1729 TGKQVFSLIIPGN------VNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIV 1890
TGKQVFSL+I N +N+ + T+ P + +SP D VII ++LSG++
Sbjct: 602 TGKQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNE-MSPNDGFVIIRGSQILSGVM 660
Query: 1891 CSKTVGKSAGN-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATY 2067
T+G + + + + + G + AAN + + + +L G +IGI D I
Sbjct: 661 DKSTLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGSDLK 720
Query: 2068 LDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKS 2247
+ + +A ++I+ + +LE PG QT E K+ +L+ R+ G
Sbjct: 721 QKKELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVREEVGEICINE 780
Query: 2248 LSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPES 2427
L N +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+S
Sbjct: 781 LDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQS 840
Query: 2428 KGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTV 2607
KGFV NS+ +GLTP EF FH++ GREGL+DTAVKTAETGY+ RRL+K+++ + YD TV
Sbjct: 841 KGFVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTV 900
Query: 2608 RNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVV 2787
RNS +VQ YG DGLD +E P + D+ D L
Sbjct: 901 RNSSNGIVQFTYGGDGLDPFDMEGDARPVNFVRQWDHAYNITFDIEDKGLLPYQI----- 955
Query: 2788 REIQESEDGISLVESEWSQLEEDRRLLR-----KIFPRGDA---KIVLPCNLQRLIWNAQ 2943
I LV+S LE+ RL+R KI P D+ + + + +R + Q
Sbjct: 956 ---------IELVDSILHPLED--RLVRYDNVGKIIPLEDSDKIEYIDQNDAEREFY--Q 1002
Query: 2944 KIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCT 3123
I + K L+ + +++ K + D I + + +N L
Sbjct: 1003 SIREFTTNKATKLAEIR----EKKMLKPFLTEPAEDFIRLDESDESLVAINQL------- 1051
Query: 3124 KNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAG 3303
SK+++ + + L + ++ +A +PG VGA+ AQS+GEP TQMTL TFH+AG
Sbjct: 1052 ------SKVSANSINKFLEQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1105
Query: 3304 VSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTC 3483
V++ NVTLGVPR+KEIIN SK + TP + L D A+ V ++E T L+ V
Sbjct: 1106 VASMNVTLGVPRIKEIINASKVISTPIINSVLVN--DDDEIAARVVKGRVEKTLLEDVA- 1162
Query: 3484 NTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMI 3663
Y+ D V + ++SI +I+L+ + +L +E I
Sbjct: 1163 ----YFIED----VYKNNMAYLSI-----------------KIDLNTIEKLQLELNIESI 1197
Query: 3664 ADRIHGG------------FGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMED 3807
A I G D + K + ++ A D V+ +
Sbjct: 1198 AHSIANAPKLKILAGDVSVTGKDRINVLVTLREPKSINLMKNASADYKGTDASIVNSL-- 1255
Query: 3808 DVFLRCIE-ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDG 3984
F R L + ++G+P IS+ +N D KK +++ +G
Sbjct: 1256 --FFRMQHLKRALPRICIKGLPDISRAVIN-IRDDGKKELLV----------------EG 1296
Query: 3985 TALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLAL 4164
L V+S + +T++N I E+F+VLGIEA R +I E+D +S G V+ RH+ L
Sbjct: 1297 YGLKEVMSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQL 1356
Query: 4165 LCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIML 4344
L DVMT KG ++ ITR G+++ L SFE+T D L +A+ + + D ++GVSE I+L
Sbjct: 1357 LGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVSECIIL 1416
Query: 4345 GQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMG 4443
GQ GTG F LV + K +E+ + G
Sbjct: 1417 GQTMNIGTGAFKLVNSFDVDKKALEMKPTLFEG 1449
>gi|50309797|ref|XP_454912.1| unnamed protein product [Kluyveromyces
lactis]
gi|49644047|emb|CAG99999.1| unnamed protein product [Kluyveromyces
lactis NRRL Y-1140]
Length = 1457
Score = 707 bits (1824), Expect = 0.0
Identities = 501/1524 (32%), Positives = 761/1524 (49%), Gaps = 76/1524 (4%)
Frame = +1
Query: 43 VSRVQFGILGPEEIKRMSVAHVEFPEVYE--NGKP-KLGGLMDPRQGVIDRRGRCMTCAG 213
+ + F L +I S + ++++ NG+ K GG +DPR GV + C TC G
Sbjct: 13 IKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTCHG 72
Query: 214 NLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR-VLEILKKTGT 390
NL C GHFGH++LA PVFH+G+ T++IL+ VC CG LL+ + R L L++ G
Sbjct: 73 NLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRPGM 132
Query: 391 NSKKRLTM---IYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
++ +R+ + I D CK + C + ++R V
Sbjct: 133 DNLRRMNILKKILDQCKKQRRCFECGELNGVVKKAAAGSGSAALKII------HDTFRWV 186
Query: 562 GIDINAE-------WKKNVNEDTQERKIM------LTAERVLEVFQQITDEDILVIGMDP 702
G E WK+ + + + + + L +VL +F+QI D ++G+D
Sbjct: 187 GKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDS 246
Query: 703 --QFARPEWMICTXXXXXXXXXXXXXXTFGS-AKNQDDLTHKLSDIIKTNQQLQRNEANG 873
+ RPE I S A N+DDLT KL++I+ T+ ++ G
Sbjct: 247 TSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKG 306
Query: 874 AAAHVLTDDVRLLQFHVATLV--DNCIPG-LPTATQKGGRPLKSIKQRLKGKEGRIRGNL 1044
+ + + + LQ VA + D+ P LP ++ +P++ QRLKGK+GR RGNL
Sbjct: 307 ISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNL 366
Query: 1045 MGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYP 1224
GKRVDFS RTVI+ DPNL ID V VP +A+ LT+PE VT +N KLQ+LV G +P
Sbjct: 367 SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHP 426
Query: 1225 GA-----KENGARVDLRYHPRAA-DLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGH 1386
GA K AR +LRY R LQ G VERH++DGD+++FNRQP+LH++S++ H
Sbjct: 427 GANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSH 486
Query: 1387 RVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANK 1566
KI PW TFR+N V +PYNADFDGDEMNLH+PQ+ E RAE + V L+TP++ +
Sbjct: 487 YAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 546
Query: 1567 PVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGK--VPQPAILKPKPLWTGKQ 1740
P++ QD + +++ +D F D + LL + + + +P P+I+KP LWTGKQ
Sbjct: 547 PIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHYLWTGKQ 606
Query: 1741 VFSLII------PGNVNVLRTHSTH-PDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSK 1899
VFSL+I P +N+ + + P + P + +S D V+I +LSG++
Sbjct: 607 VFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNE-MSQNDGFVLIRGSNILSGVMDKS 665
Query: 1900 TVGKSAGN-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDI 2076
+G + + + + + G AA + + + +L G +IGI D
Sbjct: 666 VLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKK 725
Query: 2077 QNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSE 2256
+ + A ++I+ + LE PG QT E K+ +L+ R+ G + L
Sbjct: 726 EQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDN 785
Query: 2257 FNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGF 2436
N +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+SKGF
Sbjct: 786 LNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGF 845
Query: 2437 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS 2616
V NS+ +GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD TVR S
Sbjct: 846 VRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTS 905
Query: 2617 LAQMVQLRYGEDGLDGMWVE--------------------NQNMPTMKPNNAVFERDFRM 2736
+VQ YG DGLD + +E N N P + P + E + +
Sbjct: 906 SNGIVQFTYGGDGLDPLDMEGNAQPVNFNRSWTHANNLTLNDNSPGLLPYQIIAETNVIL 965
Query: 2737 DLTDNKFLR-KNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPC 2913
+NK R N +++ +E + ++ I ++E S + R + +
Sbjct: 966 QPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTE------------- 1012
Query: 2914 NLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLM 3093
K + L+ L G++EL ++ + ++N
Sbjct: 1013 ------------------KALTLASLRGERGLKELV--------DEPAEELREFNWD--E 1044
Query: 3094 NILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQ 3273
N+ T+ +C SK+ + F L S++ +A +PG VGA+ AQS+GEP TQ
Sbjct: 1045 NVPASITIALNQLCKISKILVQKF---LSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQ 1101
Query: 3274 MTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKL 3453
MTL TFH+AGV++ NVTLGVPR+KEIIN SK + TP + L D A+ V ++
Sbjct: 1102 MTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVN--DNDERAARVVKGRV 1159
Query: 3454 EHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRM 3633
E T L V+ FY D+ R + L+I++D + +
Sbjct: 1160 EKTLLSDVS-------------------------FYV---QDIYRDNMAFLQIKIDSETI 1191
Query: 3634 --VDKKLTMEMI------ADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ 3789
+ +LT+E I A ++ G ND+ I D ++ IA G++ +
Sbjct: 1192 EKLQLELTLEDIVVAIAKAPKLKIG-TNDISIIGKD--------KINIAVSSDGKSMKSI 1242
Query: 3790 VDKMED----DVFLRCIE-ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKS 3954
M++ +VF R + L + ++G IS+ +N DD KR ++ G +
Sbjct: 1243 STAMKEPEPNEVFYRMQQLRRALPHIVVKGFSDISRAVIN--IRDDGKRELLVEGYGLRD 1300
Query: 3955 VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDG 4134
V + TDG + +T +N I E+++VLGIEA R I E+D +S G
Sbjct: 1301 V----MTTDG-----------VIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHG 1345
Query: 4135 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDP 4314
V+ RH+ LL DVMT KG ++ ITR G+ + L SFE+T D L +AA + + D
Sbjct: 1346 MSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDA 1405
Query: 4315 VKGVSENIMLGQLARCGTGCFDLV 4386
V+GVSE I+LGQ GTG F +V
Sbjct: 1406 VEGVSECIILGQTMSIGTGSFKVV 1429
>gi|1945435|gb|AAC49712.1| RNA polymerase II largest subunit
[Spirogyra sp.]
Length = 613
Score = 706 bits (1823), Expect = 0.0
Identities = 350/617 (56%), Positives = 454/617 (72%), Gaps = 1/617 (0%)
Frame = +1
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMN+H+ Q+ ETRAE E+ MVP+ +++PQ+N+PVMGIVQDTL R +TKR
Sbjct: 1 YNADFDGDEMNMHVCQTFETRAETMELMMVPKCVVSPQSNRPVMGIVQDTLLGCRKVTKR 60
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPD 1803
D FI+ M++LM+ ++GK+P P ILKP+PLWTGKQVFSLIIP VN+ R + HPD
Sbjct: 61 DTFIEKDVFMNILMWWEDFEGKIPSPTILKPRPLWTGKQVFSLIIPRAVNLERYSAWHPD 120
Query: 1804 SEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSH 1983
SE SPGDT+V +E GELL+GI+C K++G S G+L+H++ E+G + A F H
Sbjct: 121 SERGD----FSPGDTQVRVEKGELLAGILCKKSLGTSGGSLVHIIWEEVGPDAARKFLGH 176
Query: 1984 IQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGN 2163
Q ++N WL+++G +IGIGDTIAD +T I TI KAK +V D+IE A LE PG
Sbjct: 177 TQWLVNYWLLQQGFSIGIGDTIADASTMDTINETIAKAKTEVKDLIEAACEKQLEAQPGR 236
Query: 2164 TLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQ 2343
TL ++FEN+VNQ+LN ARD G +AQ SLSE NN INISQ+IACVGQQ
Sbjct: 237 TLMESFENRVNQVLNKARDDAGRAAQSSLSESNNVKAMVTAGSKGSFINISQMIACVGQQ 296
Query: 2344 NVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 2523
NVEGKRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTA
Sbjct: 297 NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 356
Query: 2524 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKP 2703
VKT+ETGYIQRRL+KAME VMV YDGTVRNSL ++Q YGEDG+D +W+E+Q++P+MK
Sbjct: 357 VKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQSLPSMKM 416
Query: 2704 NNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL-RKIF 2880
N + F+ +R ++ + ++ + + ++++E QLE+DRR L +I
Sbjct: 417 NKSTFDATYRYEIDQEDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIA 476
Query: 2881 PRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEIS 3060
P GD+ LP N++RLIWNAQKIFK+DLRKP +++P+ V+ G+ +L ++L +V G+D IS
Sbjct: 477 PTGDSSWPLPVNIKRLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGDDHIS 536
Query: 3061 KQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGAL 3240
++AQ NATL N LLRST+ +K + +LN EAF W++GEIE+RF Q+ PGEM+G +
Sbjct: 537 REAQKNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQWVIGEIEARFLQSQVAPGEMIGCV 596
Query: 3241 AAQSLGEPATQMTLNTF 3291
AAQS+GEPATQMTLNTF
Sbjct: 597 AAQSIGEPATQMTLNTF 613
>gi|6324690|ref|NP_014759.1| RNA polymerase III large subunit; Rpo31p
[Saccharomyces cerevisiae]
gi|133356|sp|P04051|RPC1_YEAST DNA-DIRECTED RNA POLYMERASE III
LARGEST SUBUNIT (C160)
gi|66978|pir||RNBY3L DNA-directed RNA polymerase (EC 2.7.7.6) III
160K chain - yeast (Saccharomyces cerevisiae)
gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit
[Saccharomyces cerevisiae]
gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
Length = 1460
Score = 706 bits (1821), Expect = 0.0
Identities = 501/1500 (33%), Positives = 755/1500 (49%), Gaps = 46/1500 (3%)
Frame = +1
Query: 25 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGK---PKLGGLMDPRQGVIDRRGR 195
+ P RI ++F L +I S V ++++ K PK G +DP+ GV
Sbjct: 8 ETPKRIKG-LEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLE 66
Query: 196 CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR-VLEI 372
C TC GNL C GHFGHL+LA PVFHIG+ T++IL+ +C C +L+ ++ R L
Sbjct: 67 CATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHE 126
Query: 373 LKKTGTNSKKR---LTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQ 543
L++ G ++ +R L I D CK + C + R+
Sbjct: 127 LRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWV 186
Query: 544 PSYRRVGIDI-NAEWKKNVNEDTQERKIM------LTAERVLEVFQQITDEDILVIGMDP 702
DI EWK+ + + + + + L + L +F+QI D ++G+D
Sbjct: 187 GKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDA 246
Query: 703 QF--ARPEWMICTXXXXXXXXXXXXXXTFGS-AKNQDDLTHKLSDIIKTNQQLQRNEANG 873
RPE I S A N+DDLT KL++I+ T+ ++ G
Sbjct: 247 TVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKG 306
Query: 874 AAAHVLTDDVRLLQFHVATLV--DNCIPGLPTATQKGG---RPLKSIKQRLKGKEGRIRG 1038
+ + + + LQ VA + D+ P + + GG +P++ QRLKGK+GR RG
Sbjct: 307 ISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRG 366
Query: 1039 NLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQ 1218
NL GKRVDFS RTVI+ DPNL ID V VP +A+ LT+PE VT +N KLQEL+ G
Sbjct: 367 NLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNV 426
Query: 1219 YPGA-----KENGARVDLRYHPRAA-DLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMM 1380
+PGA + AR +LRY R +LQ G VERH++DGD+++FNRQP+LH++S++
Sbjct: 427 HPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSIL 486
Query: 1381 GHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQA 1560
H KI PW TFR+N V +PYNADFDGDEMNLH+PQ+ E RAE + V L+TP++
Sbjct: 487 SHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 546
Query: 1561 NKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDG----KVPQPAILKPKPLW 1728
+P++ QD + +++ +D F D + LL + DG +P PAI+KP LW
Sbjct: 547 GEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMS--DGIEHFDIPPPAIMKPYYLW 604
Query: 1729 TGKQVFSLIIPGNVN---VLRTHSTH----PDSEDSGPYKWISPGDTKVIIEHGELLSGI 1887
TGKQVFSL+I N N V+ + + P S P + +S D VII ++LSG+
Sbjct: 605 TGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE-MSQNDGFVIIRGSQILSGV 663
Query: 1888 VCSKTVGKSAGN-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQAT 2064
+ +G + + + + + G + AAN + + + +L G +IGI D
Sbjct: 664 MDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDL 723
Query: 2065 YLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQK 2244
+ + A ++I + +LE PG QT E K+ +L+ R+ G
Sbjct: 724 KQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIN 783
Query: 2245 SLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPE 2424
L +N +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+
Sbjct: 784 ELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQ 843
Query: 2425 SKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGT 2604
SKGFV NS+ +GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD T
Sbjct: 844 SKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNT 903
Query: 2605 VRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDV 2784
VR S +VQ YG DGLD + +E P + + + D L E
Sbjct: 904 VRTSANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETA 963
Query: 2785 VREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDL 2964
+ E+ + ++ ++ + + + DA+ +L+ I N + +L
Sbjct: 964 NEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYI-NGKATALANL 1022
Query: 2965 RKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKS 3144
RK + L + +K+L + ++ + + + + L I +S +
Sbjct: 1023 RKSRGMLGL-----LEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKS--------VRK 1069
Query: 3145 KLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVT 3324
L F ++++A +PG +GA+ AQS+GEP TQMTL TFH+AGV++ NVT
Sbjct: 1070 FLEIALF---------KYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1120
Query: 3325 LGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYD 3504
LGVPR+KEIIN SK + TP + L D A+ V ++E T L V +Y
Sbjct: 1121 LGVPRIKEIINASKVISTPIINAVLVN--DNDERAARVVKGRVEKTLLSDVA-----FYV 1173
Query: 3505 PDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGG 3684
D V ++ ++ + RI+L + +LT+E IA I
Sbjct: 1174 QD----VYKDNLSFIQV-----------------RIDLGTIDKLQLELTIEDIAVAITRA 1212
Query: 3685 F-----GNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIE-ANMLS 3846
+DV+ I D ++ + G + E+DVF R + L
Sbjct: 1213 SKLKIQASDVNIIGKD----RIAINVFPEGYKAKSISTSAKEPSENDVFYRMQQLRRALP 1268
Query: 3847 DLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDP 4026
D+ ++G+P IS+ +N DD KR ++ G + V + TDG +
Sbjct: 1269 DVVVKGLPDISRAVIN--IRDDGKRELLVEGYGLRDV----MCTDG-----------VIG 1311
Query: 4027 VRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 4206
RTT+N + E+F VLGIEA R +I RE++ +S G V+ RH+ LL DVMT KG ++ I
Sbjct: 1312 SRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGI 1371
Query: 4207 TRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV 4386
TR G+++ L SFE+T D L +AA + ++D V+GVSE I+LGQ GTG F +V
Sbjct: 1372 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVV 1431
>gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida
albicans SC5314]
Length = 1448
Score = 705 bits (1820), Expect = 0.0
Identities = 502/1493 (33%), Positives = 760/1493 (50%), Gaps = 43/1493 (2%)
Frame = +1
Query: 37 RIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGK---PKLGGLMDPRQGVIDRRGRCMTC 207
+ + ++FG L ++I S ++ ++Y+ K PK G +D + G+ C TC
Sbjct: 11 KCIKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTC 70
Query: 208 AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR-VLEILKKT 384
GNL C GHFGH+ LA PVFH+G+ + +L+C+C C +L+D+ + R L L+K
Sbjct: 71 HGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKRQYLNDLRKP 130
Query: 385 GTNSKKRLTMIYDL---CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYR 555
++ +R+ +I + CK + C + R+
Sbjct: 131 HIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAALKIVHDTFRWIGKKE 190
Query: 556 RV-----GIDINAEWKKNVNEDTQERKIM--LTAERVLEVFQQITDEDILVIGMDP-QFA 711
+ +++ + +N + ++I L + L +F+QIT +D + G+DP +
Sbjct: 191 TLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGG 250
Query: 712 RPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVL 891
RPE M S N+DDLT KL++I+ T+ ++ G + + L
Sbjct: 251 RPE-MYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNL 309
Query: 892 TDDVRLLQFHVATLV--DNCIPGLPTAT--QKGGRPLKSIKQRLKGKEGRIRGNLMGKRV 1059
+ LQ VA + D+ P L T K +P+++ QRLKGK+GR RGNL GKRV
Sbjct: 310 MEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKRV 369
Query: 1060 DFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK-- 1233
DFS RTVI+ DPNL ID V VP +A+ LT+PE T +N KLQ+LV G +PGA
Sbjct: 370 DFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYV 429
Query: 1234 ----ENGARVDLRYHPRAADLH-LQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKI 1398
E G R +LR+ R LQ G VERH++DGD+++FNRQP+LH++S++ H KI
Sbjct: 430 MKQNEPGKR-NLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 488
Query: 1399 LPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMG 1578
PW TFR+N V +PYNADFDGDEMNLH+PQ+ E RAE + V L+TP++ +P++
Sbjct: 489 RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIA 548
Query: 1579 IVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGK--VPQPAILKPKPLWTGKQVFSL 1752
QD + +++ +D F D ++ LL + D + +P P I KP LWTGKQVFSL
Sbjct: 549 ATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVMLWTGKQVFSL 608
Query: 1753 IIPGN------VNVLRTHST-HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGK 1911
+I N +N+ + T HP + G +SP D V+I ++LSG++ T+G
Sbjct: 609 LIKPNKKSNVVINLDAKNKTFHPPKK--GLPNEMSPNDGFVVIRGSKILSGLMDKSTLGD 666
Query: 1912 SAGN-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGD-TIAD---QATYLDI 2076
+ + + + + G + AA + + + +L G +IGI D T AD Q L +
Sbjct: 667 GKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADELKQKKELMV 726
Query: 2077 QNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSE 2256
+ K Q +I+ + LE PG QT E K+ +L+ R+ G + L
Sbjct: 727 EQAYLKCDQ----LIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIRELDS 782
Query: 2257 FNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGF 2436
N +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+SKGF
Sbjct: 783 LNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGF 842
Query: 2437 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS 2616
V NS+ +GLTP EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD TVRNS
Sbjct: 843 VRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNS 902
Query: 2617 LAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREI 2796
+VQ YG DGLD +E KP N + D +LT N
Sbjct: 903 SNGIVQFTYGGDGLDPYDMEGD----AKPVNFNRQWDHAYNLTYN--------------- 943
Query: 2797 QESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV 2976
D SL+ Q+EE L+ + + K++ NL + + +K K++
Sbjct: 944 ---VDDASLLP---YQIEE---LVDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQ- 993
Query: 2977 NLSPLHVISGVRE-LSKKLI-IVSGNDEISKQAQYNATLLMNILL-RSTLCTKNMCTKSK 3147
N +R+ L+KK I + +E +A + A I++ + K + SK
Sbjct: 994 NDGERDFYKSIRDFLTKKSIRLALLREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSK 1053
Query: 3148 LNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 3327
++S+A L + ++ +A +PG VGA+ AQS+GEP TQMTL TFH+AGV++ NVTL
Sbjct: 1054 ISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1113
Query: 3328 GVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDP 3507
GVPR+KEIIN SK + TP + L D A+ ++E T L+ V +Y
Sbjct: 1114 GVPRIKEIINASKVISTPIINAVLVN--DDDEIAARVAKGRIEKTLLEDVA-----FYIE 1166
Query: 3508 DPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGF 3687
D V ++ ++SI +I+L+ + +L +E IA I
Sbjct: 1167 D----VYKDNLAYLSI-----------------KIDLETIDKLQLELNLENIAVAIANAP 1205
Query: 3688 GNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 3867
+ + + L E K E+ VD F L + ++G+
Sbjct: 1206 KLKIAQSDVSVTGKDRINVLVNIKETKTESLRNTVDPKNALFFRMQYLKRALPGVCIKGL 1265
Query: 3868 PAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSND 4047
P I + +N + D KK +++ +G L V++ I +TT+N
Sbjct: 1266 PNIFRAVINIKD-DGKKELLV----------------EGYGLKDVMNTEGIVGTKTTTNH 1308
Query: 4048 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 4227
+ E+ ++LGIEA R +I +E+D +S G V+ RH+ LL DVMT KG ++ ITR G+++
Sbjct: 1309 VLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSK 1368
Query: 4228 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV 4386
L SFE+T D L +AA + D ++GVSE I+LGQ GTG F LV
Sbjct: 1369 MRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLV 1421
>gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida
albicans SC5314]
Length = 1448
Score = 705 bits (1820), Expect = 0.0
Identities = 502/1493 (33%), Positives = 760/1493 (50%), Gaps = 43/1493 (2%)
Frame = +1
Query: 37 RIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGK---PKLGGLMDPRQGVIDRRGRCMTC 207
+ + ++FG L ++I S ++ ++Y+ K PK G +D + G+ C TC
Sbjct: 11 KCIKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTC 70
Query: 208 AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR-VLEILKKT 384
GNL C GHFGH+ LA PVFH+G+ + +L+C+C C +L+D+ + R L L+K
Sbjct: 71 HGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKRQYLNDLRKP 130
Query: 385 GTNSKKRLTMIYDL---CKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYR 555
++ +R+ +I + CK + C + R+
Sbjct: 131 HIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAALKIVHDTFRWIGKKE 190
Query: 556 RV-----GIDINAEWKKNVNEDTQERKIM--LTAERVLEVFQQITDEDILVIGMDP-QFA 711
+ +++ + +N + ++I L + L +F+QIT +D + G+DP +
Sbjct: 191 TLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGG 250
Query: 712 RPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVL 891
RPE M S N+DDLT KL++I+ T+ ++ G + + L
Sbjct: 251 RPE-MYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNL 309
Query: 892 TDDVRLLQFHVATLV--DNCIPGLPTAT--QKGGRPLKSIKQRLKGKEGRIRGNLMGKRV 1059
+ LQ VA + D+ P L T K +P+++ QRLKGK+GR RGNL GKRV
Sbjct: 310 MEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKRV 369
Query: 1060 DFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK-- 1233
DFS RTVI+ DPNL ID V VP +A+ LT+PE T +N KLQ+LV G +PGA
Sbjct: 370 DFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYV 429
Query: 1234 ----ENGARVDLRYHPRAADLH-LQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKI 1398
E G R +LR+ R LQ G VERH++DGD+++FNRQP+LH++S++ H KI
Sbjct: 430 MKQNEPGKR-NLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 488
Query: 1399 LPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMG 1578
PW TFR+N V +PYNADFDGDEMNLH+PQ+ E RAE + V L+TP++ +P++
Sbjct: 489 RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIA 548
Query: 1579 IVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGK--VPQPAILKPKPLWTGKQVFSL 1752
QD + +++ +D F D ++ LL + D + +P P I KP LWTGKQVFSL
Sbjct: 549 ATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVMLWTGKQVFSL 608
Query: 1753 IIPGN------VNVLRTHST-HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGK 1911
+I N +N+ + T HP + G +SP D V+I ++LSG++ T+G
Sbjct: 609 LIKPNKKSNVVINLDAKNKTFHPPKK--GLPNEMSPNDGFVVIRGSKILSGLMDKSTLGD 666
Query: 1912 SAGN-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGD-TIAD---QATYLDI 2076
+ + + + + G + AA + + + +L G +IGI D T AD Q L +
Sbjct: 667 GKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADELKQKKELMV 726
Query: 2077 QNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSE 2256
+ K Q +I+ + LE PG QT E K+ +L+ R+ G + L
Sbjct: 727 EQAYLKCDQ----LIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIRELDS 782
Query: 2257 FNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGF 2436
N +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+SKGF
Sbjct: 783 LNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGF 842
Query: 2437 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS 2616
V NS+ +GLTP EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD TVRNS
Sbjct: 843 VRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNS 902
Query: 2617 LAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREI 2796
+VQ YG DGLD +E KP N + D +LT N
Sbjct: 903 SNGIVQFTYGGDGLDPYDMEGD----AKPVNFNRQWDHAYNLTYN--------------- 943
Query: 2797 QESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV 2976
D SL+ Q+EE L+ + + K++ NL + + +K K++
Sbjct: 944 ---VDDASLLP---YQIEE---LVDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQ- 993
Query: 2977 NLSPLHVISGVRE-LSKKLI-IVSGNDEISKQAQYNATLLMNILL-RSTLCTKNMCTKSK 3147
N +R+ L+KK I + +E +A + A I++ + K + SK
Sbjct: 994 NDGERDFYKSIRDFLTKKSIRLALLREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSK 1053
Query: 3148 LNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTL 3327
++S+A L + ++ +A +PG VGA+ AQS+GEP TQMTL TFH+AGV++ NVTL
Sbjct: 1054 ISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1113
Query: 3328 GVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDP 3507
GVPR+KEIIN SK + TP + L D A+ ++E T L+ V +Y
Sbjct: 1114 GVPRIKEIINASKVISTPIINAVLVN--DDDEIAARVAKGRIEKTLLEDVA-----FYIE 1166
Query: 3508 DPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGF 3687
D V ++ ++SI +I+L+ + +L +E IA I
Sbjct: 1167 D----VYKDNLAYLSI-----------------KIDLETIDKLQLELNLENIAVAIANAP 1205
Query: 3688 GNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 3867
+ + + L E K E+ VD F L + ++G+
Sbjct: 1206 KLKIAQSDVSVTGKDRINVLVNIKETKTESLRNTVDPKNALFFRMQYLKRALPGVCIKGL 1265
Query: 3868 PAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSND 4047
P I + +N + D KK +++ +G L V++ I +TT+N
Sbjct: 1266 PNIFRAVINIKD-DGKKELLV----------------EGYGLKDVMNTEGIVGTKTTTNH 1308
Query: 4048 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 4227
+ E+ ++LGIEA R +I +E+D +S G V+ RH+ LL DVMT KG ++ ITR G+++
Sbjct: 1309 VLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSK 1368
Query: 4228 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV 4386
L SFE+T D L +AA + D ++GVSE I+LGQ GTG F LV
Sbjct: 1369 MRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLV 1421
>gi|28828616|gb|AAO51219.1| similar to Homo sapiens (Human).
Polymerase (RNA) III (DNA directed) (155kD)
[Dictyostelium discoideum]
Length = 1450
Score = 701 bits (1809), Expect = 0.0
Identities = 497/1512 (32%), Positives = 756/1512 (49%), Gaps = 64/1512 (4%)
Frame = +1
Query: 43 VSRVQFGILGPEEIKRMSVAHVEFPEVYE--NGKPKLGGLMDPRQGVIDRRGRCMTCAGN 216
+ +QFG+L ++I R+S + E+++ KP G++D + G D++ C TC +
Sbjct: 14 IGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAMCTTCGLS 73
Query: 217 LTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAP----RVLEILKKT 384
+ DC GHFG+++L PVFHIG+L + IL+ +C C +L+++ R + K
Sbjct: 74 IVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRKMRNKKMD 133
Query: 385 GTNSKKRLTMIYDLCKAKSVCE--GAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
K L I+ C+ C G+ Y Y
Sbjct: 134 NLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGKTESLQDYYALYDD 193
Query: 559 VGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
I N E K ++ + + ++ L +F++I+ +DI ++ MDP RPE +I T
Sbjct: 194 A-IKYNPEMKSHIKKAQDDLNPLVA----LNLFKKISYQDIEIMNMDPVIGRPERLILTY 248
Query: 739 XXXXXXXXXXXX-XTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQ 915
GS N+DDLT KLS+I+ N+ ++ N + A + +D LQ
Sbjct: 249 MLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSN-VDRAEMSAIMEDWDYLQ 307
Query: 916 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 1095
A +++ +PGLP K + ++ + QRLKGK GR RGNL GKRVDFS RTVI+ DP
Sbjct: 308 ASCAIYINSDVPGLPLQ-MKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSGRTVISPDP 366
Query: 1096 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENGARVDLRY 1263
NL ID V VP+ IA +T+PE VT +N+++LQ+ V G ++PGA +G + L++
Sbjct: 367 NLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYADGVKKWLKF 426
Query: 1264 HPR---AADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 1434
R AA+L + G VERH+ DGDI++FNRQP+LHK+S+M H+ +++PW T R N V
Sbjct: 427 GNREKFAAELKI--GDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTLRFNECV 484
Query: 1435 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 1614
+PYNADFDGDEMN+HLPQ+ E RAE + V LITP+ +P++ QD L A ++
Sbjct: 485 CTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLI 544
Query: 1615 TKRDVFID-WPFMMDLLMYLPTWDG-KVPQPAILKPKPLWTGKQVFSLIIPGNV--NVLR 1782
++RD F + + F + + + +P PAILKP LWTGKQ+F +++ +V +VL
Sbjct: 545 SRRDAFYERYRFALMCTHFADANEHIDLPPPAILKPVELWTGKQIFEVLLRPSVKSHVLC 604
Query: 1783 THSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGN-LLHVVTLELGYE 1959
T + Y + P D V + EL+ G + +G N L H++ +
Sbjct: 605 NFETRSRTYSKNLY--MCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPT 662
Query: 1960 IAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHND 2139
IAAN + + + +L +G +IGI D + + I A + ++ +
Sbjct: 663 IAANCMTRLAKLCARFLGDQGFSIGIPDIKPAEDLDRKKREIIETAYKKCAVFLKDYESG 722
Query: 2140 DLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQ 2319
L+ + G ++ QTFE K+NQ L+ RD G L +N+ INI+Q
Sbjct: 723 SLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQ 782
Query: 2320 VIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGG 2499
+I CVGQQ V G RIP GF +RT PHF P+SKGFV NS+ G+ P+EFFFH MGG
Sbjct: 783 MICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGG 842
Query: 2500 REGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEN 2679
REGL+DTAVKTAETGY+QRRL+KA+E + +YD TVR+S+ +VQ YG+DGLD +E
Sbjct: 843 REGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYGDDGLDPAGMEA 902
Query: 2680 QNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDR 2859
++ P DF + K R+ +E ++ + + S+++S S+ E
Sbjct: 903 KDRPV----------DFLRAMMSVKSTRQCRNEPEMKPFEIRKLVESIIDS--SKFEACT 950
Query: 2860 RLLR---KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVREL---- 3018
L + ++F G+ K +Q LI LRK LS + E+
Sbjct: 951 DLFKNEIRVFFNGNEK--TKGYIQELI---------SLRKQFKLSSFDLNDNEDEIIIED 999
Query: 3019 SKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFD--------WL 3174
+ + I + + NA + NI + N K+ E + L
Sbjct: 1000 NSPMDISTTTTTTTTTTTNNAVKITNITTDIEMNESNKEENDKIEKERIEKEKESKRLKL 1059
Query: 3175 LGE------------------IE-------SRFQQAIAQPGEMVGALAAQSLGEPATQMT 3279
LGE IE ++ +A +PG VGA+ AQS+GEP TQMT
Sbjct: 1060 LGERFANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMT 1119
Query: 3280 LNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEH 3459
L TFH+AGV++ NVTLGVPR+KEIIN +K + TP +T L D A+ V ++E
Sbjct: 1120 LKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITASLN--CDYDIRSARIVAGRIEK 1177
Query: 3460 TTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVD 3639
TTL V + ++ + + L I++D K VD
Sbjct: 1178 TTLGHVATHI----------------------------KEVVKRAGCYLSIKID-KNFVD 1208
Query: 3640 K---KLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDD 3810
++ + I+ I G + N + ++LRI + E
Sbjct: 1209 SLQLEINSKTISQSIASTKGLKLKPEQITTNGD---YKLRIV---------PPANIREGS 1256
Query: 3811 VFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTA 3990
++ N L + ++GIP +++V +++ D+K+ + L +G
Sbjct: 1257 LYYLQFLKNNLPAVIVKGIPTVNRVVISK--VDEKQE-------------RYQLLVEGYD 1301
Query: 3991 LLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLC 4170
L V++ I TTSN I E LGIE R I E+D +++ G ++ RH+ LL
Sbjct: 1302 LRAVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLA 1361
Query: 4171 DVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQ 4350
D+M+ KG ++ ITR GI + + LM SFE+T D L +AAVH +D + GVSE I++G
Sbjct: 1362 DLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGV 1421
Query: 4351 LARCGTGCFDLV 4386
+ GTG F L+
Sbjct: 1422 VIPLGTGLFKLL 1433
>gi|49090376|ref|XP_406649.1| hypothetical protein AN2512.2
[Aspergillus nidulans FGSC A4]
gi|40744841|gb|EAA63997.1| hypothetical protein AN2512.2 [Aspergillus
nidulans FGSC A4]
Length = 2092
Score = 700 bits (1806), Expect = 0.0
Identities = 466/1486 (31%), Positives = 736/1486 (49%), Gaps = 36/1486 (2%)
Frame = +1
Query: 37 RIVSRVQFGILGPEEIKRMSVAHVEFPEVY--ENGKPKL-GGLMDPRQGVIDRRGRCMTC 207
+++ ++FG+L ++I V V + + EN + + G +D R G+ ++ C TC
Sbjct: 669 KVIKELKFGVLSNDDIVSQGVVEVSDRKFFNLENDRSIVPNGPLDARMGISNKTSTCQTC 728
Query: 208 AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRV-LEILKKT 384
G L C GHFGH+ L P FH+G+ + + IL+ +C C +L+ ++ R L +++
Sbjct: 729 GGALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPEAERRAFLREMRRP 788
Query: 385 GTNSKKRLTM---IYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXV-----AGGCGRY 540
++ +R+ + + D C+ CE A +
Sbjct: 789 RLDNLRRMQIAKRVNDRCRKTRTCENCGAVNGVVKKTGTSSLKITHDKFRAFNASTSAKK 848
Query: 541 QPSYRRVGIDINAEWKKNVNEDTQERKIM----LTAERVLEVFQQITDEDILVIGMDPQF 708
P ++ D + E ++ N + ++ L A RVL +F++I+D D ++G+DP+
Sbjct: 849 IPPPSKIVFDRSLEEARSSNPEVEKHHKKAQDDLNALRVLNLFKRISDSDCELLGLDPKE 908
Query: 709 ARPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHV 888
ARPE + S+ +DDLT KL DI+++N L+ GA
Sbjct: 909 ARPEMFLWQFIPAPPVCIRPSVGQDASS-TEDDLTAKLGDIVQSNINLKNALLKGAPVQT 967
Query: 889 LTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFS 1068
+ + +Q +A +++ +PGL A G+P++ QRLKGK+GR RGNL GKRVDFS
Sbjct: 968 IMECWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 1025
Query: 1069 ARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-----K 1233
RTVI+ DPNL +D V VP +A+N+T+PE+V +N +KLQ+ V G ++PGA K
Sbjct: 1026 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPGANYIIKK 1085
Query: 1234 ENGARVDLRY-HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS 1410
N + L+Y + + LQ G VERH++DGDI++FNRQP+LHK+S++ H K+ P
Sbjct: 1086 GNPLKTMLKYGNLKFIADQLQEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHR 1145
Query: 1411 TFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQD 1590
TFR+N V +PYNADFDGDEMNLH+PQ+ E RAE E+ V L TP+ +P++G +QD
Sbjct: 1146 TFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIIGAIQD 1205
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYL--PTWDGKVPQPAILKPKPLWTGKQVFSLIIPG 1764
+ A +++ +D F D + +Y+ P +P PA+ KP+ LWTGKQVF++++
Sbjct: 1206 FISAAYLLSSKDNFFDRRSFTQICLYMLGPQTRFDLPPPAVFKPQMLWTGKQVFNILMRP 1265
Query: 1765 N------VNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSA-GN 1923
N VN+ + + P + + P D+ +++ + E++ G++ TVG N
Sbjct: 1266 NKDDPVLVNLDAACKQFKPPKGNQP-RDLDPNDSWLVVRNSEVMCGVMDKSTVGSGKKDN 1324
Query: 1924 LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQ 2103
+ +++ + G AA + + + W G +IGI D + + A
Sbjct: 1325 VFYIMLRDFGPAAAAEGMNRLSKLSARWFSNMGFSIGITDVYPSDRLVQSKNDLVEAAYA 1384
Query: 2104 DVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXX 2283
+VI K LE PG QT EN+++ IL+ R + G LS++N+
Sbjct: 1385 QCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECIAQLSKYNSPLIMAT 1444
Query: 2284 XXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGL 2463
IN+SQ++A VGQQ + G+R+ GF+ RTLPHF K+ P SKGFV NS+ +GL
Sbjct: 1445 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 1504
Query: 2464 TPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRY 2643
P EF FHAM GREGL+DTAVKTAETGY+ RRL+K++E + YD TVRNS +VQ +Y
Sbjct: 1505 LPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDDTVRNSSQGIVQFQY 1564
Query: 2644 GEDGLDGMWVENQNMPTMKPNNAVFERDF-RMDLTDNKFLRKNYSEDVVREIQESEDGIS 2820
G+D LD + +E + P F+R F + T K ++ S + E+ E
Sbjct: 1565 GDDKLDPVDMEGKAKPVH------FDRTFIHAETTTYKNEERSLSPAEIMEVCE------ 1612
Query: 2821 LVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVI 3000
L ++R L + G L + + VD + +
Sbjct: 1613 ------EMLSKERAKLARYDLMG----------AELDYMDRSDHGVDQFESARDFLDSIQ 1656
Query: 3001 SGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLG 3180
V+ + KLI G+ + S + K + KL +
Sbjct: 1657 QYVQTKADKLISRGGDSDPSDER----------------TIKGLNHTGKLTERTLRTFIA 1700
Query: 3181 EIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV 3360
E ++++A +PG VGA+ AQS+GEP TQMTL TFH+AGV+ ++T GVPR+KEIIN
Sbjct: 1701 ECLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINA 1760
Query: 3361 SKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDP---KNTVIA 3531
SK + TP ++ L EK V ++ ++K I+Y + K +
Sbjct: 1761 SKEISTPVISCELV-------EKRNIVAARMAKGRIEKTFLRDIIHYVRETWTGKEAYLT 1813
Query: 3532 EDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIY 3711
W +I +L T + + + +R + L + IH +H
Sbjct: 1814 VKINWDTI----SALELDLTVGKIRQAIENHRRFKSEDLKLRSTRSHIH------IHIDL 1863
Query: 3712 TDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRC-IEANMLSDLTLQGIPAISKVY 3888
+ EKL + ++ D FLR +L D+ + G P ++
Sbjct: 1864 DPASKEKL--------------SKTEIAATSSDPFLRLKALKRLLPDIQVLGHPQANRAI 1909
Query: 3889 MNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEV 4068
+ + D +++ +G L + ++ ID +RT SN++ E EV
Sbjct: 1910 IRTDDKSDTNTLLV----------------EGYGLRQCMNTVGIDGLRTRSNNVMETREV 1953
Query: 4069 LGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 4248
LGIEA R I +E+ V+ ++ RH+ LL DVMT KG ++ ITR G+ + L
Sbjct: 1954 LGIEAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQ 2011
Query: 4249 RCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV 4386
SFE+T D L +A D ++GVSE I++G+ GTG ++V
Sbjct: 2012 LASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEVV 2057
>gi|31127028|gb|AAF26643.2| RNA polymerase II largest subunit
[Nipponopsalis abei]
Length = 445
Score = 699 bits (1803), Expect = 0.0
Identities = 332/445 (74%), Positives = 388/445 (86%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDV+++ +M++LM+LP WDGKVP PAILKPKPLWTGKQVFSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVYLEKYQIMNILMFLPIWDGKVPMPAILKPKPLWTGKQVFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++R HSTHPD ED GPYK+ISPGDTKV+IE GEL+SGIVC TVG S+G+L+H+V EL
Sbjct: 61 NLIRKHSTHPDEEDDGPYKYISPGDTKVLIEAGELISGIVCKNTVGSSSGSLMHIVFAEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+A FY HIQTV+N WL+ EGHTIGIGDTIADQ TY+DIQ TIRKAKQDV+DVIEKA
Sbjct: 121 GHEVAGAFYGHIQTVVNNWLLLEGHTIGIGDTIADQQTYIDIQATIRKAKQDVIDVIEKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG+SAQKSLSEFNNF IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV YDGT+RNS Q++QLRYGEDGLDG+
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSTGQVIQLRYGEDGLDGVA 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE+Q MPT+KP+N FE+ F+ D+++ + LR+ ++EDVVRE+Q S +S +E EW +L+
Sbjct: 361 VEHQAMPTLKPSNKAFEKKFKFDISNERHLRRIFTEDVVRELQGSASALSELEKEWERLK 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR +LR++FP GD+K+VLPCNLQR
Sbjct: 421 KDREMLRQVFPMGDSKVVLPCNLQR 445
>gi|31127012|gb|AAF26625.2| RNA polymerase II largest subunit
[Carcinoscorpius rotundicauda]
Length = 445
Score = 697 bits (1799), Expect = 0.0
Identities = 331/445 (74%), Positives = 386/445 (86%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MT+RDVF++ MM+LLMYLP WDGK+P PAILKPKPLWTGKQ+FSLIIP N+
Sbjct: 1 TLTAVRKMTRRDVFLEKDQMMNLLMYLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPPNI 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPYKWISPGDTKV+IEHGEL+SGIVC KTVG S+G+L+HVV EL
Sbjct: 61 NLIRTHSTHPDEEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFNEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+A FY HIQTV+N WL+ EGHTIGIGDTIAD TY++IQNTI+KAKQDV++VIEKA
Sbjct: 121 GHEVAGQFYGHIQTVVNNWLLLEGHTIGIGDTIADPQTYIEIQNTIKKAKQDVIEVIEKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG+SAQKSLSEFNNF IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVM YDGTVRNS Q++QL+YGEDGLDG
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTVRNSTGQVIQLKYGEDGLDGTA 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+KP++ FE+ FR ++++ ++LR+ ++EDVVR++ S +S +E EW +L+
Sbjct: 361 VEFQSLPTLKPSDKAFEKKFRFNVSNERYLRRIFTEDVVRDLMGSATALSELEKEWEKLK 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LLR IFP GD+K+VLPCNLQR
Sbjct: 421 HDRELLRAIFPTGDSKVVLPCNLQR 445
>gi|13274160|emb|CAC33863.1| RNA polymerase II largest subunit
[Pleistophora sp. LS]
Length = 897
Score = 696 bits (1795), Expect = 0.0
Identities = 420/1022 (41%), Positives = 581/1022 (56%), Gaps = 8/1022 (0%)
Frame = +1
Query: 241 GHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIY 420
GH+EL KPVFHIG++ + KIL VCFYC R+ K G ++ + L +
Sbjct: 1 GHIELCKPVFHIGYIGRIKKILESVCFYCSRI--------------KNGDSNTRSLNSAW 46
Query: 421 DLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVN 600
K+KS+C+ GCG QP ++R G+ N+
Sbjct: 47 SKNKSKSLCDS------------------------GCGSKQPHFKREGM--------NIF 74
Query: 601 EDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXT 780
E +++L+ E+V E+F +ITD D +G D A P ++ +
Sbjct: 75 TTIDENRVVLSGEKVAEIFARITDGDCKALGFDSVNAHPSSLLISSVLVVPPACRPSISL 134
Query: 781 FGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLP 960
G + +DDLTHKLSDIIK+N+ L++NEA GA AHV+ + +LLQFHV T +D I G P
Sbjct: 135 EGFLRAEDDLTHKLSDIIKSNKTLRKNEAEGAPAHVIREYEQLLQFHVNTYMDTEIAGQP 194
Query: 961 TATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQ 1140
A QK GRP+KSI R+KGKEGRIRGNLMGKRVDFSAR+VITA+PN+ +D +GVPR IA
Sbjct: 195 QALQKSGRPIKSISSRIKGKEGRIRGNLMGKRVDFSARSVITAEPNIDLDELGVPREIAV 254
Query: 1141 NLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHPRAADLHLQPGYRV 1308
TFPE V +N+ +L ELV RG QYPGA + +G ++DLR+ + LQ G+ V
Sbjct: 255 IETFPEKVNSYNIIRLSELVKRGPAQYPGANYVIRGDGMKIDLRF---TRSVELQIGWTV 311
Query: 1309 ERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLP 1488
ERHM DGD ++FNRQP+LHKMSMM HRV+++ +FR+NLSVT+PYNADFDGDEMNLH+P
Sbjct: 312 ERHMVDGDYVLFNRQPSLHKMSMMCHRVRVMEGKSFRLNLSVTTPYNADFDGDEMNLHMP 371
Query: 1489 QSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMY 1668
QS T E+ + VP +++PQ+NKP+MGIVQDTL V +M+ +FI+ + LMY
Sbjct: 372 QSYITAVELRRLTHVPLHILSPQSNKPIMGIVQDTLVGVYIMSGDSIFIEESTTHN-LMY 430
Query: 1669 LPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDT 1848
D K PAIL+P+ ++TGKQ+FS+++P P +
Sbjct: 431 TVDIDSKC-TPAILRPERIYTGKQLFSMVLP-------------------PTLIYCTDNI 470
Query: 1849 KVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHT 2028
K++ G L+ G+V K VG +L+H++ L+ G ++A +F+++IQ V+ A+L G +
Sbjct: 471 KIV--DGVLIKGVVSKKVVGSVRNSLIHILYLDYGAKVALSFFNNIQRVVTAFLSSYGFS 528
Query: 2029 IGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILN 2208
GIGDTIAD T + I ++ A V ++ + + L PG +LR+TFE+ V QILN
Sbjct: 529 CGIGDTIADFDTSMKINEELKDAVDSVNGLLLEGRDRKLRRRPGLSLRETFESSVMQILN 588
Query: 2209 DARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRH-- 2382
ARD +G+ AQKSLS NN INISQV ACVGQQ VEG+RI G+ +
Sbjct: 589 KARDTSGTVAQKSLSSDNNLRTMVLAGSKGSFINISQVTACVGQQTVEGRRIACGYYYHK 648
Query: 2383 RTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRL 2562
RTLPHF +DD P ++GFV NSYL+GL P EF+FHAMGGREGLIDTA KTAETGY+QRRL
Sbjct: 649 RTLPHFSRDDLSPRARGFVVNSYLSGLNPDEFYFHAMGGREGLIDTACKTAETGYMQRRL 708
Query: 2563 IKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDL 2742
IKAME++ V YDG V + +V+ YG DG DG W N
Sbjct: 709 IKAMENLRVEYDGNVGD--GGIVRFGYG-DGNDG-WDAN--------------------- 743
Query: 2743 TDNKFLRKNYSEDVVREIQESEDGISL-VESEWSQLEEDRRLLRKIFPRGDA-KIVLPCN 2916
R +Q + G + + +EE+ + R+ K +P N
Sbjct: 744 ----------ISGECRGVQYNPIGEYIDAYIQCKSIEEEMKCERQTLSASSTIKCTMPIN 793
Query: 2917 LQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMN 3096
++R++ A + V + S SK+ +I + + + LL N
Sbjct: 794 IKRVLSTAMRFDTVPANYRIFFS-----------SKRALIKNMLKYLDMDIIIHRVLLNN 842
Query: 3097 ILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQM 3276
ILL ++ + ++ E ++ + + ++A P EMVG LAAQS+GEPATQM
Sbjct: 843 ILL-------SLKSGDGISEEGLKYIQCILLKKIKKARINPMEMVGTLAAQSIGEPATQM 895
Query: 3277 TL 3282
TL
Sbjct: 896 TL 897
>gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300
[Cryptococcus neoformans var. neoformans B-3501A]
Length = 1466
Score = 692 bits (1787), Expect = 0.0
Identities = 482/1505 (32%), Positives = 749/1505 (49%), Gaps = 55/1505 (3%)
Frame = +1
Query: 37 RIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKP-----KLGGLMDPRQGVIDRRGRCM 201
R + +QF P++I R+S V E+Y+N + L G +D R G ++ +C
Sbjct: 21 RRIKHIQFQPFTPKDIVRISEVQVSIAELYQNNEDGTRTTALQGPLDARMGPNEKGKKCA 80
Query: 202 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSA-PRVLEILK 378
TC + C GH+G+++L PVFHIG+ T+ +L C+C C R+L+ ++ L+ +
Sbjct: 81 TCGEDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTCARVLLPETERASFLKRFR 140
Query: 379 KTGTNSKKRLTM---IYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPS 549
+ S +R + + CK +++C ++P
Sbjct: 141 RPNLESLQRQSAAKAVLAACKKQNICTYCGAPNGIVKKSGPLRIS-----------HEPY 189
Query: 550 YRRVGIDINAEWKKNVNEDTQERKIMLT----------AERVLEVFQQITDEDILVIGMD 699
+ EW E + + T +VL +F++IT ED ++ +
Sbjct: 190 RAAKMASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLH 249
Query: 700 PQFARPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAA 879
P+ RPE I + + N+DDLT KL++I+ N L G
Sbjct: 250 PEVGRPEDYIWQYISVPPPCIRPSVAS-EAGNNEDDLTAKLAEIVNYNNTLALMMDLGRG 308
Query: 880 AHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRV 1059
+++ + +L VA +++ PG+ T G +P++ QRLKGK+GR RGNL GKRV
Sbjct: 309 IEMISSNWEVLGQAVALYINSQAPGMQTI---GSKPIRGFVQRLKGKQGRFRGNLSGKRV 365
Query: 1060 DFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK-- 1233
DFS RTVI DPNL ID V VP +A L++PE VT +N+ +++ + G +PGA
Sbjct: 366 DFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPGANVL 425
Query: 1234 ----ENGARV--------DLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSM 1377
ENG+ V DL R A LQ G V RH++DGDI++FNRQP+LHK+S+
Sbjct: 426 ERKHENGSTVRISLNVMKDLEARKRYAR-ELQIGDIVHRHVRDGDIVLFNRQPSLHKLSI 484
Query: 1378 MGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQ 1557
M HRV++ PW TFR+N V +PYNADFDGDEMNLH+PQ+ E R E E+ V + L+TP+
Sbjct: 485 MCHRVRVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPR 544
Query: 1558 ANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKV--PQPAILKPKPLWT 1731
+P++ +QD + A ++++RD F D ++ YL + K+ P P I KP LWT
Sbjct: 545 NGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIVSYLDDANLKIEMPPPTIWKPVRLWT 604
Query: 1732 GKQVFSLIIPGN------VNVLRTHST--HPDSEDSGPYKWISPGDTKVIIEHGELLSGI 1887
GKQ+F+L++ N VN+ T P ED P +SP D ++I++ E++ G+
Sbjct: 605 GKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPD-MSPNDGYLVIQNSEIMCGV 663
Query: 1888 VCSKTVGKSAGN-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQAT 2064
TVG N + V+ + G E AA + + + WL G ++GI D I
Sbjct: 664 FDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVIPGPIL 723
Query: 2065 YLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQK 2244
+ + KA + I+ A LE PG T E+K+++ L+D R+ G +
Sbjct: 724 HASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDVREAVGKICMQ 783
Query: 2245 SLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPE 2424
LS N IN++Q++ACVGQQ + G R+ GF+ R+LPHF K P
Sbjct: 784 ELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSKNPP 843
Query: 2425 SKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGT 2604
SKGFV NS+ +GLTP EF FHAM GREGL+DTAVKTAETGY+ RRL+KA+E + +YD +
Sbjct: 844 SKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLS 903
Query: 2605 VRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDV 2784
VRNS+ +VQ +YG+D LD +E P V N+ R Y +V
Sbjct: 904 VRNSVGGIVQFQYGDDMLDPACLEGD----ATPVEYVRSWTHACRTAGNQG-RALYPYEV 958
Query: 2785 VREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDL 2964
R I S V +S + R+ P +V P L + F+ +
Sbjct: 959 -RRIAARIYPESFVPPNFSLSPPKTKSRRRKEPTPPPPVVAP-TLPKEWEGCHHKFRENT 1016
Query: 2965 RKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNI---LLRSTLCTKNMC 3135
K V V V+++ + + D ++ L+N ++ L N
Sbjct: 1017 YKFV------VDKIVKQMVDQRLARGLPDADDEEMAEEYEALLNSDDPAVQRVLENANKV 1070
Query: 3136 TKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAK 3315
T+++L+S L R+ +A +PG VGA+ AQS+GEP TQMTL TFH+AGV++
Sbjct: 1071 TEAQLSS-----FLENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASM 1125
Query: 3316 NVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAI 3495
NVTLGVPR+KEIIN +K + TP + L A + A+ V ++E T L +
Sbjct: 1126 NVTLGVPRIKEIINAAKVISTPIIAAEL--AIPESETAARIVKGRIEKTVLGDIAA---- 1179
Query: 3496 YYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMI---- 3663
+E W + + H I++D R + ++++E I
Sbjct: 1180 -----------VIEESWTNANAYIEVH-----------IDMDAVRRLQLEISLESIKWAL 1217
Query: 3664 --ADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEAN 3837
A+++ G+ I+ ++ + + +DKG E++ FL+
Sbjct: 1218 VRANKLKIPEGS----IHISQKTSRIRIWIDESDKDKGVGIYERLK------FLK----R 1263
Query: 3838 MLSDLTLQGIPAISKVYMNQPNTDDK-KRIIITPEGGFKSVADWILETDGTALLRVLSER 4014
+ + ++G+PAI + + + ++K R+++T G L V+
Sbjct: 1264 AIPSVQVKGLPAIERGVVTKDEKNEKIHRLLVT----------------GYGLSEVMGTE 1307
Query: 4015 QIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGH 4194
+D ++T +N + E +VLGIEA R I E+ + G ++ RH+ LL DVMT KG
Sbjct: 1308 GVDGLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDPRHVMLLGDVMTYKGE 1367
Query: 4195 LMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLA-RCGTG 4371
++ ITR G+ + + LM SFE+T D L +A++++++D ++GVSE I++G A CGT
Sbjct: 1368 VLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVSECIIMGTPAPGCGTS 1427
Query: 4372 CFDLV 4386
+V
Sbjct: 1428 LASIV 1432
>gi|38232259|gb|AAR14965.1| RNA polymerase II largest subunit
[Eurypauropus spinosus]
Length = 445
Score = 691 bits (1784), Expect = 0.0
Identities = 326/445 (73%), Positives = 386/445 (86%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TLCAVR MTKRDVF++ MM+LLM+LP WDGK+PQPAILKPK LWTGKQ+FSLIIPGNV
Sbjct: 1 TLCAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPQPAILKPKALWTGKQLFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GP++WISPGDTKV++EHGEL+ GI+C+KTVG+SAG+LLH+V LE+
Sbjct: 61 NIVRTHSTHPDEEDDGPFRWISPGDTKVLVEHGELICGIICNKTVGRSAGSLLHIVMLEM 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+++A FYSHIQTV+N WL+ +GH+IGI D IADQ TY+DIQ TI+KAK DVV++IE+A
Sbjct: 121 GWQVAGLFYSHIQTVVNNWLLLDGHSIGINDAIADQETYIDIQETIKKAKIDVVEIIERA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSEFNNF IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKSMVVSGSKGSKIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV YDGTVRNS QM+Q RYGEDG+D
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSAGQMIQFRYGEDGVDACA 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE QN+ T+KP++ FE+ F+ D T+ ++LR+ ++E +V+EI S +S +E+EW QL
Sbjct: 361 VEFQNLATLKPSDKAFEQKFKFDATNERYLRRVFNESIVKEILGSAMAVSQLEAEWEQLR 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR +LR+IFP+GD KIVLPCN+QR
Sbjct: 421 KDRDILRQIFPKGDNKIVLPCNMQR 445
>gi|45190855|ref|NP_985109.1| AER252Cp [Eremothecium gossypii]
gi|44983897|gb|AAS52933.1| AER252Cp [Eremothecium gossypii]
Length = 1459
Score = 691 bits (1782), Expect = 0.0
Identities = 494/1503 (32%), Positives = 761/1503 (49%), Gaps = 55/1503 (3%)
Frame = +1
Query: 43 VSRVQFGILGPEEIKRMSVAHVEFPEVY--ENGK-PKLGGLMDPRQGVIDRRGRCMTCAG 213
+S ++F L +I S + +++ E+G+ PK GG +D R GV + C TC G
Sbjct: 13 ISGLEFSALSASDIVAQSEVEIFTRDLFDLEDGRAPKKGGALDSRMGVSSSQAECSTCHG 72
Query: 214 NLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR-VLEILKKTGT 390
L C GHFGH++LA PVFH+G+ T++IL+ +C C +LL+++ R L L++ G
Sbjct: 73 TLASCHGHFGHIKLALPVFHVGYFKATIQILQSICKNCAKLLLNEEDKRQFLSELRRPGI 132
Query: 391 NSKKR---LTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
++ +R L + D CK + C + ++R V
Sbjct: 133 DNLRRMATLKKVLDQCKKQRRCLHCGMLNGVVKKAAAGSGSAALKII------HDTFRWV 186
Query: 562 GIDINAEWKKNVNEDTQ--------ERKIMLTAE-----RVLEVFQQITDEDILVIGMDP 702
G E K + + Q ER + T E + L +F+QI+ +D ++G+D
Sbjct: 187 GKKSAPEKDKWIGDWNQVLQHSPELERYMKRTMENLNPLKTLNLFKQISPQDCELLGIDS 246
Query: 703 --QFARPEWMICTXXXXXXXXXXXXXXTFGS-AKNQDDLTHKLSDIIKTNQQLQRNEANG 873
+ RPE I S A N+DDLT KL++I+ T+ ++ G
Sbjct: 247 TVKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKG 306
Query: 874 AAAHVLTDDVRLLQFHVATLV--DNCIPGLPTATQKGGR--PLKSIKQRLKGKEGRIRGN 1041
+ + + + LQ VA + D+ P L GG+ P++ QRLKGK+GR RGN
Sbjct: 307 ISINNMMEQWDYLQMAVAMYINSDSVNPALMPGGNGGGKTKPIRGFCQRLKGKQGRFRGN 366
Query: 1042 LMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQY 1221
L GKRVDFS RTVI+ DPNL ID V VP +A+ LTFPE VT +N KLQ+L+ G +
Sbjct: 367 LSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVNGANVH 426
Query: 1222 PGA-----KENGARVDLRYHPRAA-DLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMG 1383
PGA K AR +LRY R +LQ G VERH++DGD+++FNRQP+LH++S++
Sbjct: 427 PGANYLLKKNEEARRNLRYGDRIKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILS 486
Query: 1384 HRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQAN 1563
H KI PW TFR+N V +PYNADFDGDEMNLH+PQ+ E RAE + V L+TP++
Sbjct: 487 HYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSG 546
Query: 1564 KPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGK----VPQPAILKPKPLWT 1731
+P++ QD + +++ +D F D + +L + DG +P PAI++P LWT
Sbjct: 547 EPIIAATQDFITGSYLISHKDSFFDRATFVQMLSMMS--DGNLQFDIPPPAIMRPHYLWT 604
Query: 1732 GKQVFSLIIPGN------VNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVC 1893
GKQ+FSL+I N +N+ + + ++ +S D V+I +LSG++
Sbjct: 605 GKQLFSLLIKPNKKSPVIINLDAKNKVYIAPKNKAYPNEMSANDGYVVIRGSNILSGVMD 664
Query: 1894 SKTVGKSAGN-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYL 2070
+G + + + + + G + A + + + +L G +IGI D
Sbjct: 665 KSVLGDGKKHSVFYTILRDFGPQEATQAMNRMAKLCARYLGNRGFSIGISDVTPGVELKA 724
Query: 2071 DIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSL 2250
+ + A ++I+ LE PG QT E K+ +L+ R+ G + L
Sbjct: 725 TKEEMVEIAYAKCDELIDLYKRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIREL 784
Query: 2251 SEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESK 2430
N +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+SK
Sbjct: 785 DNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSK 844
Query: 2431 GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVR 2610
GFV NS+ +GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD TVR
Sbjct: 845 GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR 904
Query: 2611 NSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVR 2790
S +VQ YG DGLD + +E KP N F R + D +N + N+ + +
Sbjct: 905 TSSNGIVQFTYGGDGLDPLNMEG----NAKPVN--FNRSW--DHANN--ITYNHDDKGML 954
Query: 2791 EIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRK 2970
Q E+ +++ QL + + P + + L +A++ F LR
Sbjct: 955 PYQILEETNAILHPLEQQLSRYDNVGNPLAPGLENE-----ELYIDQHDAEREFYQSLR- 1008
Query: 2971 PVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLC----TKNMCT 3138
+ + E ++KL ++ + + K+ + L + ++ C K++
Sbjct: 1009 ----------TYMSEKARKLADITKSRGL-KELYHAPALELQLMDLDASCPEVDVKSVNQ 1057
Query: 3139 KSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKN 3318
K++S+ L S++++A +PG VGA+ A S+GEP TQMTL TFH+AGV++ N
Sbjct: 1058 LCKISSKLVRTFLDIAISKYRKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMN 1117
Query: 3319 VTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIY 3498
VTLGVPR+KEIIN SK + TP + L D A+ V ++E T L V I+
Sbjct: 1118 VTLGVPRIKEIINASKVISTPIINATLVN--DDDERAARVVKGRVEKTLLSDV-----IF 1170
Query: 3499 YDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIH 3678
Y D V ++ ++ + +++L + +LT+E IA I
Sbjct: 1171 YIQD----VYRDNMSFLQV-----------------KVDLATIEKLQLELTVEDIAIAI- 1208
Query: 3679 GGFGNDVHTIYTDDNAEKLVFRLRI---AGEDKGEAQEEQV---DKMEDDVFLRCIE-AN 3837
+ +V R +I D +A+ + E+DVF +
Sbjct: 1209 ----TSAPKLKISTGDVSIVGRNKININVCNDLDKAKSISTLASEPHENDVFFKMQHLRR 1264
Query: 3838 MLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQ 4017
L + ++G+P IS+ +N DD KR ++ G + V + TDG
Sbjct: 1265 ALPGIVVKGLPDISRAVIN--IRDDGKRELLVEGYGLRDV----MTTDG----------- 1307
Query: 4018 IDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 4197
+ +T +N E+++VLGIEA R +I E+D +S G V+ RH+ LL DVMT KG +
Sbjct: 1308 VVGYKTKTNHFLEVYDVLGIEAARTSIIDEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEV 1367
Query: 4198 MAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCF 4377
+ ITR G+++ L SFE+T D L +AA + ++D V+GVSE I+LGQ GTG F
Sbjct: 1368 LGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMTIGTGSF 1427
Query: 4378 DLV 4386
+V
Sbjct: 1428 KVV 1430
>gi|38232379|gb|AAR15025.1| RNA polymerase II largest subunit
[Thereuonema sp. JCR-2003]
Length = 445
Score = 689 bits (1777), Expect = 0.0
Identities = 327/445 (73%), Positives = 386/445 (86%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ +M+LLM+LP WDGK+P PAILKPKPLWTGKQ+FSLIIP NV
Sbjct: 1 TLTAVRKMTKRDVFLEKDQVMNLLMFLPIWDGKMPMPAILKPKPLWTGKQIFSLIIPMNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHS HPD ED GPYKWISPGDTKV++EHG+L+SGI+C KT+G SAG+LLH+V LEL
Sbjct: 61 NMIRTHSAHPDEEDDGPYKWISPGDTKVLVEHGDLISGILCKKTLGTSAGSLLHIVMLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+EIA FY HIQTV+N WL+ EGHTIGIGDTIAD TY+DIQN+I+KAKQDV++VIEKA
Sbjct: 121 GWEIAGTFYWHIQTVVNNWLLLEGHTIGIGDTIADPQTYIDIQNSIKKAKQDVIEVIEKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEP+PGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSE+NNF IN
Sbjct: 181 HNDELEPSPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKAMVVSGAKGSKIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVM+ YDGTVRNS+ Q++QLRYGEDGLD
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNSVGQLIQLRYGEDGLDAGA 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q +PT+KP+N FE+ FR D+++ + L+K ++ED+V+++ S ++ +E EW+ L+
Sbjct: 361 VEFQFLPTLKPSNKAFEKKFRFDISNERQLKKIFNEDIVKDLMGSAHIVNELEREWTTLQ 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LR IFP+GD+KIVLPCNLQR
Sbjct: 421 KDREALRSIFPKGDSKIVLPCNLQR 445
>gi|13274097|emb|CAC33855.1| RNA polymerase II largest subunit
[Cystosporogenes operophterae]
Length = 982
Score = 687 bits (1774), Expect = 0.0
Identities = 417/1046 (39%), Positives = 591/1046 (55%), Gaps = 32/1046 (3%)
Frame = +1
Query: 241 GHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIY 420
GH+EL+KP+FH+G+LTK K L CVCFYC ++ I K+ + L +
Sbjct: 1 GHMELSKPMFHVGYLTKIKKTLECVCFYCSKIKISKN-------------KLDEGLEHCW 47
Query: 421 DLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVN 600
K K++CEG GCG QPS ++ G+++ A K+
Sbjct: 48 TALKFKNICEGEVTSEGKT----------------GCGNKQPSIKKEGLNLIAFMKE--- 88
Query: 601 EDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXT 780
++ E K++L ERV + ++I +ED +G P+F +PEWMI
Sbjct: 89 DEYNEGKVVLNGERVYNILKKIPEEDYRFLGFHPEFCKPEWMILCAIIVPPPAVRPSIVL 148
Query: 781 FGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLP 960
G + +DDLTHKL+DI+ ++ E H++ D +LLQFH+ATL+DN I
Sbjct: 149 NGYLRGEDDLTHKLADIVSPMPIFKKYEQEVLPGHIVRDYEQLLQFHLATLIDNDIVAA- 207
Query: 961 TATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQ 1140
TA QK GRPLK+ LK + GRIRGNLMGKRVDFSAR+VI+ DPN+ + VGVP IA+
Sbjct: 208 TALQKNGRPLKASAHVLK-ERGRIRGNLMGKRVDFSARSVISPDPNISVQEVGVPVGIAK 266
Query: 1141 NLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHPRAADLHLQPGYRV 1308
TFPE V FN+D LQELV+RG ++PGA + +G R+DL ++ +L L+ G+ V
Sbjct: 267 VHTFPEKVNSFNIDYLQELVDRGPNEHPGANYLIRSDGQRIDLNFNRH--ELKLEKGFIV 324
Query: 1309 ERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLP 1488
ERHM++ D ++FNRQP+LHKMSMMGHR KI+ TFR+NLS TSPYNADFDGDEMNLH+P
Sbjct: 325 ERHMQNNDEVLFNRQPSLHKMSMMGHRAKIMQGKTFRLNLSATSPYNADFDGDEMNLHMP 384
Query: 1489 QSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMY 1668
QS +++E+ + V +Q+++PQ+NKPV+GIVQDTL + T RD F M LL
Sbjct: 385 QSYPSKSELCSLTSVSKQIVSPQSNKPVIGIVQDTLVGAFLFTIRDSFFKRAEAMSLLYN 444
Query: 1669 LPTWDGK------VPQPAILKPKPLWTGKQVFSLIIPG-----NVNVLRTHSTHPDSEDS 1815
L + K +P IL+P LWTGKQ+FS I+P NV ++
Sbjct: 445 LNVFGKKNQDFIDFMKPTILEPVELWTGKQIFSAILPRIFYDRQANVGIDQDISDRLNEN 504
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
+ ++ D++ II++G LL+G + ++G G ++ ++ + G A NF IQ +
Sbjct: 505 KEWNTMNCTDSRTIIKNGVLLAGRIDVVSMGTKQGGIIQIIYNDCGSNAALNFIDSIQRL 564
Query: 1996 INAWLIR-EGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLR 2172
IN +L+ +IGIGD IAD T + T++KA + D+I ++L+ PG +L
Sbjct: 565 INYFLLHISSFSIGIGDCIADSRTLDVCRKTVKKAMDEADDIITITKRNELDKLPGMSLS 624
Query: 2173 QTFENKVNQILNDAR----------DRTGSSAQKS--LSEFNNFXXXXXXXXXXXXINIS 2316
TFE+KVN ILN AR +RTG + +S +S NN INIS
Sbjct: 625 ATFESKVNVILNKARNIPTISDETSERTGKKSFRSNLISPNNNMKSMVLSGSKGSYINIS 684
Query: 2317 QVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMG 2496
Q+ C+GQQNVEGKRIPFGF R+LPHF K DY S+GFV+NSY++G+ P EFFFHAMG
Sbjct: 685 QITTCMGQQNVEGKRIPFGFNERSLPHFYKYDYTARSRGFVQNSYISGMWPDEFFFHAMG 744
Query: 2497 GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE 2676
G EG+IDT++KTAETGYIQRRL+KA+E +D +VRN + Q +YG+D D +E
Sbjct: 745 GGEGIIDTSIKTAETGYIQRRLVKALEDATAQHDYSVRNGSGDIYQFKYGDDSFDATHLE 804
Query: 2677 NQNMPTMKPNNAVFERDFRMDL-TDNKFLRK--NYSEDVVREIQESEDGISLVESEWSQL 2847
N ++ + A F+ + +D+ D + K S DV +++ D L+++E+ L
Sbjct: 805 NISL-----DLADFKDKYFIDMFGDENYAIKPSQVSSDVYEMMRDDLDLQKLLDAEYEYL 859
Query: 2848 EEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV-NLSPLHVISGVRELSK 3024
+R L+ + P N+ R++ N KI+ + V N IS LS
Sbjct: 860 YTNRALMSGFYSS-------PVNIGRILSN--KIYLKNHELTVENSKNNRTISPYVILSS 910
Query: 3025 KLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQ 3204
++GN K+ Y + +NI L+ F+ +L EI + +
Sbjct: 911 LDAAMTGN----KKLDYYIRISLNIKF----------VLLNLSLANFNGILDEIALKIMK 956
Query: 3205 AIAQPGEMVGALAAQSLGEPATQMTL 3282
+ EMVG LAAQS+GEPATQMTL
Sbjct: 957 SRVNANEMVGTLAAQSVGEPATQMTL 982
>gi|38232223|gb|AAR14947.1| RNA polymerase II largest subunit
[Allopauropus proximus]
Length = 445
Score = 687 bits (1772), Expect = 0.0
Identities = 323/445 (72%), Positives = 383/445 (85%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TLCAVR MTKRDVF++ MM+LLMYLP WDGK+PQPAIL+PKP+WTGKQ+F+LIIPG V
Sbjct: 1 TLCAVRKMTKRDVFLEKDQMMNLLMYLPIWDGKMPQPAILRPKPMWTGKQLFTLIIPGTV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
NV+RTHSTHPD ED GPYKWISPGDTKV++EHGEL+SGI+C KT+G SAG+LLH+V LE+
Sbjct: 61 NVIRTHSTHPDEEDDGPYKWISPGDTKVLVEHGELISGIICKKTIGTSAGSLLHIVMLEM 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+ +A FYSHIQTV+N+WL+ +GH+IGI DTIADQ TY++IQ TI+KAK DVV+VIE+A
Sbjct: 121 GWHVAGLFYSHIQTVVNSWLLLDGHSIGINDTIADQETYIEIQETIKKAKYDVVEVIERA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TGS+AQKSL+EFNNF IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGSNAQKSLTEFNNFKSMVVSGSKGSKIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV YDGT+RNS +QMVQ RYGEDGLD
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSASQMVQFRYGEDGLDACH 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q + T+KP++ FE+ F+ D T+ + LR+ ++E +V+E+ + +ESEW QL
Sbjct: 361 VEFQWLATLKPSDRSFEQKFKFDATNERHLRRVFNESIVKELLGCATAVGQLESEWEQLR 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR +LR++FP+G+ KIVLPCNLQR
Sbjct: 421 KDREILRQVFPKGENKIVLPCNLQR 445
>gi|38232273|gb|AAR14972.1| RNA polymerase II largest subunit
[Harbansus paucichelatus]
Length = 445
Score = 686 bits (1771), Expect = 0.0
Identities = 325/445 (73%), Positives = 387/445 (86%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ MM+LLMYLP WDGK+PQPAILKPKPLWTGKQ+FSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEKDQMMNLLMYLPLWDGKMPQPAILKPKPLWTGKQLFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPY+WISPGDTKV++EHG+L+ GI+C K++G SAG+LLH+V +EL
Sbjct: 61 NMIRTHSTHPDEEDDGPYRWISPGDTKVMVEHGDLVMGILCKKSLGTSAGSLLHIVWMEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+EI FY +IQTV+N WL+ EGH+IGIGDTIAD TYLDIQNTI+KAK+DV+DVI+KA
Sbjct: 121 GHEICGLFYGNIQTVVNNWLLIEGHSIGIGDTIADPQTYLDIQNTIKKAKRDVIDVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
H D+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HLDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFI DDYGPES+GFVENSYLAGLTP+EFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFITDDYGPESRGFVENSYLAGLTPTEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRNS+ Q++QLRYGEDGL G +
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGEF 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+KP+N VF++ F+ D T+ ++LR+ +SEDVV+E+ S D I+ +E EW QL
Sbjct: 361 VEFQSIPTIKPSNKVFQKKFKFDPTNERYLRRVFSEDVVKEVMGSGDAIAEIEKEWEQLM 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LR++FP GD+K+VLPCNLQR
Sbjct: 421 KDRESLRQVFPTGDSKVVLPCNLQR 445
>gi|31127018|gb|AAF26632.2| RNA polymerase II largest subunit
[Hanseniella sp. 'Han']
Length = 468
Score = 686 bits (1771), Expect = 0.0
Identities = 332/467 (71%), Positives = 397/467 (84%)
Frame = +1
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
GPYKWISPGDTKV++EHGEL+SGI+C KT+G SAG+LLH+V LELG+E A FY HIQTV
Sbjct: 1 GPYKWISPGDTKVLVEHGELISGILCKKTLGTSAGSLLHIVMLELGWETAGLFYWHIQTV 60
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL+ EGHTIG+ DTIAD+ TY +I+ TI+KAKQDV++VIEKAHND+LEP+PGNTLRQ
Sbjct: 61 VNNWLLLEGHTIGMCDTIADRQTYEEIKKTIQKAKQDVIEVIEKAHNDELEPSPGNTLRQ 120
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
TFEN+VN+ILNDARD+TG SAQKSLSEFNNF INISQVIACVGQQNVEG
Sbjct: 121 TFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKGSKINISQVIACVGQQNVEG 180
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA
Sbjct: 181 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 240
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRLIKAMESVMV YDGT+RNS+ Q++QLRYGEDGLDG VE Q+MPT+KPN+
Sbjct: 241 ETGYIQRRLIKAMESVMVTYDGTIRNSVCQLIQLRYGEDGLDGGAVEFQSMPTLKPNHDA 300
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDA 2895
F R FR D+++ + +RK ++EDVV+++ S +S +E EW L++DR+ LR+IFP+GD+
Sbjct: 301 FARKFRFDVSNERNMRKIFTEDVVKDLIGSAQVLSELEKEWELLQKDRKSLREIFPKGDS 360
Query: 2896 KIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQY 3075
K+VLPCNLQR+IWNAQKIF ++ R +L+P+ VI GVREL+KK++IV G D ISKQA
Sbjct: 361 KVVLPCNLQRMIWNAQKIFHINQRSATDLNPVRVIEGVRELTKKIVIVVGEDRISKQANE 420
Query: 3076 NATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQ 3216
NATLL N LLRSTLCTK + + +L +EAF+WLLGEIE+RFQQA +Q
Sbjct: 421 NATLLFNCLLRSTLCTKRVAEEFRLTTEAFEWLLGEIETRFQQAHSQ 467
>gi|38232229|gb|AAR14950.1| RNA polymerase II largest subunit [Argulus
sp. Arg2]
Length = 445
Score = 686 bits (1770), Expect = 0.0
Identities = 325/445 (73%), Positives = 381/445 (85%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ +M+LLMYLP W+GKVP P ILKPKPLWTGKQ+FSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEKDEIMNLLMYLPRWNGKVPLPCILKPKPLWTGKQLFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ LEL
Sbjct: 61 NLIRTHSTHPDDEDDGPYKWISPGDTKVLVEHGELIMGILCKKTLGTSAGSLLHITWLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+ FY +IQTV+N WL+ EGH+IGIGDTIAD TYLDIQNTI+KAK+DV++VI+KA
Sbjct: 121 GHEVCGEFYGNIQTVVNNWLLIEGHSIGIGDTIADPQTYLDIQNTIKKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKSMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS+ Q++QLRYGEDGL W
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAAEW 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
+E Q +PT+KP+N FE+ F+ D T+ ++LRK ++ED+V+EI S + IS +E EW QL
Sbjct: 361 LEFQTLPTVKPSNKSFEKKFKFDATNERYLRKVFTEDIVKEIMGSGEVISELEKEWEQLF 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LR+IFP G+ K+VLPCNLQR
Sbjct: 421 SDRNALRQIFPTGENKVVLPCNLQR 445
>gi|32405384|ref|XP_323305.1| hypothetical protein [Neurospora crassa]
gi|28917640|gb|EAA27335.1| hypothetical protein [Neurospora crassa]
Length = 1533
Score = 685 bits (1767), Expect = 0.0
Identities = 496/1506 (32%), Positives = 745/1506 (48%), Gaps = 61/1506 (4%)
Frame = +1
Query: 52 VQFGILGPEEIKRMSVAHVEFPEVY--ENGKPKLG-GLMDPRQGVIDRRGRCMTCAGNLT 222
+QFG+ ++I V V +Y ENG+ G +DPR G + G C TC L
Sbjct: 24 LQFGVQSHQDIVNQGVLEVSDNLLYDVENGRRTFPHGPLDPRLGTSSKTGTCETCNLPLQ 83
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAP-RVLEILKKTGTNSK 399
C GHFGH+ L PVFHIG+L L+ +C C ++L+++ + L+ L+ G ++
Sbjct: 84 SCAGHFGHVRLPLPVFHIGYLKYIQATLQNICKTCSKVLLEEEPKAKFLKALRAPGIDNL 143
Query: 400 KR---LTMIYDLCKAKSVC------EGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSY 552
KR L I D C+ + C +G A + P
Sbjct: 144 KRSAILKKINDECRKQKTCPYCGDTQGVIRKLSVMKLTHDKFSHFNKSTAQ---KKVPPV 200
Query: 553 RRVGIDINAEWKKNVNEDTQE--RKIM--LTAERVLEVFQQITDEDILVIGMDPQFARPE 720
+ D + K D ++ +K M + +VL++F++IT ED ++G++P RPE
Sbjct: 201 AKAAFDSSFIQAKTFTPDLEKHSKKAMDDMDPLKVLKLFKKITAEDCELLGLNPSEGRPE 260
Query: 721 WMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 900
M +A N+DD+T KLS+II L+ + GAA + + +
Sbjct: 261 -MFLWQYLPAPPICIRPSVQQEAASNEDDITSKLSEIILYAGHLRESLLKGAALNTIMEQ 319
Query: 901 VRLLQFHVATLVDNCIPGLPTATQKG-GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSART 1077
+Q V V++ +PGL Q G G+P++ QRLKGK+GR RGNL GKRVDFS RT
Sbjct: 320 WEFIQLQVGMYVNSDVPGL---YQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 376
Query: 1078 VITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-----KENG 1242
VI+ DPNL ID V VP +A+NLT+PE V N++KL++ V G +PGA ++ G
Sbjct: 377 VISPDPNLGIDQVAVPERVAKNLTYPERVNRNNIEKLRKCVMNGPKVWPGAQGVIKRDGG 436
Query: 1243 ARVDLRY------HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILP 1404
+ +L + RA +L G VERH++DGDI++FNRQP+LHK+S+M HR K+ P
Sbjct: 437 MKFNLNFGDESIREERARELKF--GDVVERHLEDGDIVLFNRQPSLHKLSIMSHRAKVRP 494
Query: 1405 WSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIV 1584
W TFR+N V +PYNADFDGDEMNLHLPQ+ E RAE + V LITP+ +P++
Sbjct: 495 WRTFRLNECVCTPYNADFDGDEMNLHLPQTEEARAEAINLMGVQNNLITPKNGEPIIAAT 554
Query: 1585 QDTLCAVRMMTKRDVFIDWPFMMDLL--MYLPTWDGKVPQPAILKPKPLWTGKQVFSLII 1758
QD + A +++ +D+F+D + M L +P P I+KP LWTGKQ+F++++
Sbjct: 555 QDFITAAYLLSSKDLFLDRKTFTYICTQMLLGETHLDLPPPTIIKPVELWTGKQIFNVLM 614
Query: 1759 PGN------VNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAG 1920
N VN+ + + P I D +++ + E++ G + TVG
Sbjct: 615 RPNKQSPVLVNLEAKNKVYKAKPGELPDMDID--DCYLVVRNSEVMCGRMDKSTVGGGKK 672
Query: 1921 N-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKA 2097
N + +V+ + G E AA + + + L G +IG+GD + D+ K
Sbjct: 673 NSVFYVILRDWGPEHAAQAMNRLAKLCARTLTLRGFSIGVGDVYPSK----DLTEHKAKL 728
Query: 2098 KQDVV----DVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNN 2265
QD D+I + + LE PG + +T ENK++ IL+ R + G LS N+
Sbjct: 729 VQDAYALCDDLIAQFKSGRLEKAPGCNMEETLENKISGILSKVRSQAGDYCVGHLSRNNS 788
Query: 2266 FXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVEN 2445
IN++Q++A VGQQ + GKR+ GF+ RTL HF K+ P SKGFV N
Sbjct: 789 PLIMAKSGSKGSDINVAQMVALVGQQIIGGKRVADGFQDRTLFHFHKNARQPPSKGFVRN 848
Query: 2446 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQ 2625
S+ GL P+EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD TVR S
Sbjct: 849 SFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGN 908
Query: 2626 MVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYS---EDVVREI 2796
+VQ +YG D LD +E P + M+ D L S ++++ E
Sbjct: 909 IVQFQYGADRLDPADMEGNAKPVDFERSWNHAESLTMNHNDRSLLPAEISAMCKEILDER 968
Query: 2797 QESEDGISLVESEWSQLE-------EDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFK 2955
++ LV E E +D + I A++ L + A K+ K
Sbjct: 969 RKWYVRKHLVTGELLHYEDKTIAESDDHDVFIAIDEHEGARVYLNTIQAEMDKRALKLAK 1028
Query: 2956 VDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMC 3135
RK L P + +L K+ ++ Q + M + ++
Sbjct: 1029 A--RKLAGLDPC-LPQDNADLLKEF-------AAWEKKQNGGDIKMLDPEEEEIQQAHVD 1078
Query: 3136 TKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAK 3315
+K++ + S+F +A +PG VGA+ AQS+GEP TQMTL TFH+AGV+
Sbjct: 1079 RVAKVSEATLRKFMNLCLSKFDKAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGM 1138
Query: 3316 NVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAI 3495
++T GVPR+KEII SK + TP ++ L +D + A+ V K+E T + V
Sbjct: 1139 SITQGVPRIKEIIGASKLISTPVISCELEN--NRDIKAARIVKGKIEKTYISDVITYVED 1196
Query: 3496 YYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMV----DKKLTMEMI 3663
+ PD V+ D+ S L I L R+ MV KKL +++
Sbjct: 1197 VWLPDVAKIVL--------------KIDMQALSDMQLGIGL-REIMVAIVKAKKLKLKVE 1241
Query: 3664 ADRIHGGFGNDVHTIYTDD----NAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRC-I 3828
D + G N + I ++D A+K R+R A +KG+ D+ D LR
Sbjct: 1242 MDDLKIGPDNTIEVIVSNDWKDLTAQKKAARVRAAAIEKGQLLLTTSDETAADFQLRVNF 1301
Query: 3829 EANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLS 4008
ML + + G P + + +++ K ++ +G L ++
Sbjct: 1302 LKRMLPAVPISGYPEAFRAIIQSSESNEHKVLV-----------------EGYGLRACMT 1344
Query: 4009 ERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAK 4188
+ + SN I E +VLGIEA R I +E+ +V+ G ++ RH+ LL DVMT K
Sbjct: 1345 TEGVIGTKCISNSIMECRDVLGIEAARTTIAKEIGSVMGDMG--IDPRHMDLLADVMTYK 1402
Query: 4189 GHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGT 4368
G ++ ITRHG+ + L SFE T D L +AA + D + GVSE I++GQ + GT
Sbjct: 1403 GEILGITRHGLAKMRDSVLQLASFERTPDHLFDAAAGMKTDRILGVSECIIMGQTMKIGT 1462
Query: 4369 GCFDLV 4386
G F +V
Sbjct: 1463 GAFQVV 1468
>gi|38232373|gb|AAR15022.1| RNA polymerase II largest subunit
[Skogsbergia lerneri]
Length = 445
Score = 683 bits (1762), Expect = 0.0
Identities = 325/445 (73%), Positives = 381/445 (85%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ MM+LLMYLP+WDGK+PQP+ILKPKPLWTGKQ+FSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEKEEMMNLLMYLPSWDGKMPQPSILKPKPLWTGKQLFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPYKWISPGDTKV++EHG+L+ GI+C K++G SAG+LLH+V +EL
Sbjct: 61 NMIRTHSTHPDDEDKGPYKWISPGDTKVMVEHGDLVMGILCKKSLGASAGSLLHIVWMEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+EI FY +IQTV+N WL+ EGH+IGIGDTIAD TY DIQNTIRKAK+DV DVI KA
Sbjct: 121 GHEICGEFYGNIQTVVNNWLLIEGHSIGIGDTIADNQTYHDIQNTIRKAKRDVADVITKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
H D+LEPTPGNTLRQTFEN+VN+ILN+ARD+TG SA+ SL+E+NN IN
Sbjct: 181 HYDELEPTPGNTLRQTFENQVNRILNEARDKTGGSAKMSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR R+LPHFI DDYGPESKGFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRSLPHFIADDYGPESKGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRNS+ Q++QLRYGEDGL G W
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGEW 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+KP+N F + F+ D T+ K+LR+ +SEDVV+E+ S D I +E EW QL
Sbjct: 361 VEFQSIPTIKPSNTAFHKQFKFDPTNEKYLRRIFSEDVVKEVMGSGDMIPEIEKEWEQLM 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR +LR IFP GD+++VLPCNLQR
Sbjct: 421 KDREVLRTIFPAGDSQVVLPCNLQR 445
>gi|19112298|ref|NP_595506.1| putative dna-directed rna polymerase iii
largest subunit [Schizosaccharomyces pombe]
gi|9297042|sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III
largest subunit
gi|7492545|pir||T40607 probable dna-directed rna polymerase iii
largest subunit - fission yeast (Schizosaccharomyces
pombe)
gi|4467280|emb|CAB37604.1| SPBC651.08c [Schizosaccharomyces pombe]
Length = 1405
Score = 682 bits (1759), Expect = 0.0
Identities = 484/1494 (32%), Positives = 745/1494 (49%), Gaps = 32/1494 (2%)
Frame = +1
Query: 16 VDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYE--NGKPKLGGLMDPRQGVIDRR 189
+D Q P RI +QFGI GPEE + V ++Y + P G +D G +++
Sbjct: 5 IDDQIPKRI-KHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTSNKQ 63
Query: 190 GRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLI-DKSAPRVL 366
C TC ++ DC GHFG+++LA PVFHIG+ TL IL+ +C C +L+ D+ + L
Sbjct: 64 INCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFL 123
Query: 367 EILKKTGTNSKKRLTM---IYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGR 537
+ L++ G ++ +R + I D CK C R
Sbjct: 124 KDLRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAGPLKIIHE--------R 175
Query: 538 YQPSYRRVGIDINAEWKKNVNEDTQ---ERKIMLTAE-------RVLEVFQQITDEDILV 687
++ Y R D ++ + +E + E K+ L+ +VL +F+QIT D +
Sbjct: 176 FR--YVRKSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCEL 233
Query: 688 IGMDPQFARPEWMICTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEA 867
+GMDP+ RPE ++ G A +DDLT K+++II T+ ++ +
Sbjct: 234 LGMDPEHGRPENLLWRYVPAPPVCIRPSVAQEG-ATTEDDLTVKITEIIWTSSLIRAALS 292
Query: 868 NGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLM 1047
G L + +Q +A +++ +PGL + +P++ QRLKGK+GR RGNL
Sbjct: 293 KGTPISNLMEQWEFMQLSIAMYINSEMPGLRPSDMPS-KPIRGFCQRLKGKQGRFRGNLS 351
Query: 1048 GKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG 1227
GKRVDFS RTVI+ DPNL ID V VP IA+ LTFPE VT N LQ+ + G +PG
Sbjct: 352 GKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG 411
Query: 1228 A-----KENGARVDLRY--HPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGH 1386
A +E+G + LR+ R AD L+ G VERH+ D D+++FNRQP+LHK+S+M H
Sbjct: 412 ANYVIDRESGFKRFLRFGNRNRIAD-DLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAH 470
Query: 1387 RVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANK 1566
VK+ PW T R N V PYNADFDGDEMNLH+PQ+ E + E E+ + L++P+ +
Sbjct: 471 LVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGE 530
Query: 1567 PVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKV--PQPAILKPKPLWTGKQ 1740
P++ QD + A +++ +D F+D + ++ Y+ + P PAI+KP+ LWTGKQ
Sbjct: 531 PIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCLWTGKQ 590
Query: 1741 VFSLIIPGN----VNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVG 1908
VF++++ N V V T S + P D ++I + E+++G+V VG
Sbjct: 591 VFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGVVDKSVVG 650
Query: 1909 KSA-GNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNT 2085
+L +V+ + G AA + + + +L G +IGI D ++ +
Sbjct: 651 DGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEIL 710
Query: 2086 IRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNN 2265
+ KA D I + LE PG T E K++ L+ RD G L N+
Sbjct: 711 VNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMDELGPANS 770
Query: 2266 FXXXXXXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVEN 2445
IN+SQ++ACVGQQ + GKR+P GF+ R+LPHF K+ P +KGFV N
Sbjct: 771 PLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSN 830
Query: 2446 SYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQ 2625
S+ +GLTP+EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YDGTVR+S +
Sbjct: 831 SFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSD 890
Query: 2626 MVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQES 2805
+VQ YG+DGLD ++E + + D D+ L + V R +
Sbjct: 891 VVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNLNYDRHDSAMLPYEIIDYVNRALD-- 948
Query: 2806 EDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLS 2985
D K + CN + F +R V +
Sbjct: 949 ----------------------------DPKFLTNCN---------RDFIETIRTFVIEN 971
Query: 2986 PLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAF 3165
++ VRE + L + ++ + R ++ T+ +L S
Sbjct: 972 IAKYLASVRE-RRDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRS--- 1027
Query: 3166 DWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 3345
+ ++ +A +PG VGA+ AQS+GEP TQMTL TFH+AGV+A+ TLGVPR+K
Sbjct: 1028 --FVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT-TLGVPRIK 1084
Query: 3346 EIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTV 3525
EIIN +KT+ TP +T L +D A+ V ++E T LK VT Y P
Sbjct: 1085 EIINAAKTISTPIITGQLIND--RDERSARVVKGRIEKTYLKDVTSYIEEVYGPVTTYLS 1142
Query: 3526 IAEDEEWVS-IFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVH 3702
I + + +S + ++ D++ + W + ++ +++T+ +IH VH
Sbjct: 1143 IQVNFDTISKLQLDITLADIA-AAIW----NTPKLKIPSQQVTVNNTLQQIH------VH 1191
Query: 3703 TIYTDDNAE-KLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAIS 3879
T ++E ++ +RL+ +L D+ + GIP I+
Sbjct: 1192 TSSDGKSSETEVYYRLQTY-------------------------KRVLPDVVVAGIPTIN 1226
Query: 3880 KVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEI 4059
+ +NQ + + L +GT L V++ I +T++N + E+
Sbjct: 1227 RSVINQESGKIE------------------LFMEGTGLQAVMNTEGIVGTKTSTNHVMEM 1268
Query: 4060 FEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVG 4239
+VLGIEA R +I E+ ++ G V+ RH+ LL DVMT KG ++ ITR G+ + +
Sbjct: 1269 KDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDS 1328
Query: 4240 ALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK 4401
L SFE+T D L AA +D ++G+SE I+LG+LA GT F L+ E+
Sbjct: 1329 VLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRRTEE 1382
>gi|31127020|gb|AAF26631.2| RNA polymerase II largest subunit [Endeis
laevis]
Length = 445
Score = 681 bits (1757), Expect = 0.0
Identities = 321/445 (72%), Positives = 382/445 (85%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ MM LLM+LP W+G++PQP+ILKPKPLWTGKQ+FSLIIPG V
Sbjct: 1 TLTAVRKMTKRDVFLERDQMMTLLMFLPVWNGRMPQPSILKPKPLWTGKQLFSLIIPGTV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N +RTHSTHPD ED G YKWISPGDTKV+IEHG+LLSGI+C KTVG S G+L+H+V EL
Sbjct: 61 NCIRTHSTHPDEEDDGDYKWISPGDTKVLIEHGDLLSGIICKKTVGSSGGSLMHIVMAEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+A FY HIQTV+N WL+ EGH+IGIGDTIAD TY DI+NTI+KAK DV++VIEKA
Sbjct: 121 GHEVAGLFYGHIQTVVNNWLLLEGHSIGIGDTIADHQTYQDIRNTIKKAKNDVIEVIEKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TGSSAQKSLSEFNNF IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVSGSKGSKIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYL+GLTP+EFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLSGLTPAEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVM+ YDGTVRNS+ Q++QLRYGEDGLDG
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMITYDGTVRNSVQQLIQLRYGEDGLDGTM 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++P++KP++ VF + F+ D ++ ++LR+ ++EDVV+E+ S + I L+E E+ +L+
Sbjct: 361 VEFQSLPSIKPSDRVFHKQFKFDPSNERYLRRIFTEDVVKELTSSGNAIGLLEKEFEKLK 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
DR +LR +FP GD+K+VLPCNL R
Sbjct: 421 RDREVLRSVFPTGDSKVVLPCNLTR 445
>gi|38232265|gb|AAR14968.1| RNA polymerase II largest subunit
[Forficula auricularia]
Length = 445
Score = 674 bits (1739), Expect = 0.0
Identities = 324/445 (72%), Positives = 380/445 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ MM+LLM+LP WDGK+PQPAILKPKPLWTGKQ+FSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ LEL
Sbjct: 61 NLIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICYLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+ FY +IQTVIN WL+ EGH+IGIGDTIAD TYL+IQ I+KAK+DV++VI+KA
Sbjct: 121 GHELCGQFYGNIQTVINNWLLYEGHSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YD TVRNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDSTVRNSVGQLIQLRYGEDGLCGEI 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE QN+PT+K +N FE+ FR D T+ + LR+ ++EDVVRE+ S + IS +E EW QL
Sbjct: 361 VEFQNLPTIKLSNKAFEKKFRFDPTNERQLRRVFNEDVVRELMGSGEVISELEREWDQLS 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LR+IFP G++K+VLPCNLQR
Sbjct: 421 KDREALRQIFPSGESKVVLPCNLQR 445
>gi|31127026|gb|AAF26640.2| RNA polymerase II largest subunit
[Machiloides banksi]
Length = 445
Score = 674 bits (1738), Expect = 0.0
Identities = 321/445 (72%), Positives = 380/445 (85%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ MM++LM+LP WDGK+PQPAILKPKP+WTGKQVFSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPAILKPKPMWTGKQVFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ LEL
Sbjct: 61 NMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICMLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+A FY +IQTVIN WL+ EGH+IGIGDTIAD TYL+IQ I+KAK+DV++VI+KA
Sbjct: 121 GHEVAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGT+RNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGET 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q+ PT+K +N FE+ F+ D T+ ++LR+ ++ED+++E+ S + IS +E EW QL+
Sbjct: 361 VEFQSQPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDIMKELMGSGEVISELEREWDQLQ 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LR IFP GD K VLPCNLQR
Sbjct: 421 KDREALRLIFPNGDNKAVLPCNLQR 445
>gi|34597078|gb|AAQ77114.1| RNA polymerase II largest subunit
[Lithobius forticatus]
Length = 445
Score = 672 bits (1734), Expect = 0.0
Identities = 318/445 (71%), Positives = 377/445 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ MM+LLM+LP WDGK+P PA+LKPKPLWTGKQ+FSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAVLKPKPLWTGKQLFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N +R H +HPD ED PYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+V LEL
Sbjct: 61 NCIRAHYSHPDDEDDSPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVMLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+ +A FY HIQ VIN WL+ EGH+IGI DTIAD TY+DIQN+I+KAKQDV++VIEKA
Sbjct: 121 GWGVAGLFYWHIQMVINNWLLLEGHSIGIDDTIADPQTYIDIQNSIKKAKQDVIEVIEKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TGSSA+KSLSEFNNF IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAEKSLSEFNNFKSMVVSGAKGSKIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGF RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFCKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMES+M YDGT+RNS+ Q++QLRYGEDGLDG
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESIMATYDGTIRNSVGQLIQLRYGEDGLDGGA 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q +PT+KP+N FE+ F+ D+++ + L++ ++ED+V+E+ S ++ +E EW L+
Sbjct: 361 VEFQALPTLKPSNKAFEKKFKFDISNERQLKRVFNEDIVKELMGSAHIVNELEKEWESLK 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LLR IFP+GD+K+VLPCNL R
Sbjct: 421 RDRELLRNIFPKGDSKVVLPCNLTR 445
>gi|464671|sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II largest
subunit
gi|2117913|pir||A56823 DNA-directed RNA polymerase (EC 2.7.7.6) II
largest chain - slime mold (Dictyostelium discoideum)
(fragment)
gi|263754|gb|AAB24966.1| RNA polymerase II largest subunit
[Dictyostelium discoideum]
Length = 902
Score = 672 bits (1734), Expect = 0.0
Identities = 390/826 (47%), Positives = 519/826 (62%), Gaps = 73/826 (8%)
Frame = +1
Query: 2488 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGM 2667
AMGGREGLIDTAVKT+ETGYIQR L+KAME V + YD TVRNSL ++Q YGEDG+DG
Sbjct: 1 AMGGREGLIDTAVKTSETGYIQRCLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGC 60
Query: 2668 WVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQL 2847
+VENQ++ +++ +N ER +R + + V+ ++ +E E+ ++
Sbjct: 61 FVENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERI 120
Query: 2848 EEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSK 3024
+ DR LLR +I P G+A LP NL+RLI NAQK+F +D+R+ +L+P V+ + +L
Sbjct: 121 KSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVA 180
Query: 3025 KLIIVSGNDEISK---------QAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLL 3177
+L I++ D + +NAT+L +IL+RST +K + T+ +L +AF W+
Sbjct: 181 RLKIIATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVC 240
Query: 3178 GEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIIN 3357
GEIES+F QA+A PGEMVGALAAQS+GEPATQMTLNTFHYAGVS+KNVTLGVPRL +IIN
Sbjct: 241 GEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLNQIIN 300
Query: 3358 VSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAED 3537
++K +KTPSLT++L A+D ++AK V +LE+TTL VT T IYYDPDP+NT+I+ED
Sbjct: 301 IAKQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISED 360
Query: 3538 EEWVSIFYEMPDH--DLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIY 3711
E+V+ ++E+PD D+ SPWLLRIELDR + DKKLTM I + FG ++ I+
Sbjct: 361 AEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIF 420
Query: 3712 TDDNAEKLVFRLRIAGEDKGEAQEEQ-VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVY 3888
+DDNAEKL+ R+R+ E+QE + D +DD FLR IE+NMLS++ L+GI I KV+
Sbjct: 421 SDDNAEKLILRIRMV-----ESQETKGTDNDDDDQFLRRIESNMLSEMVLRGIKGIKKVF 475
Query: 3889 MNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEV 4068
M D+K +T GF +WIL+TDG +LL V+S +D RTTSNDI EI +V
Sbjct: 476 MR----TDEKIPKVTENSGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQV 531
Query: 4069 LGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 4248
LGIEAVR A+ +E+ VISFDGSYVNYRHLA+L DVMT +GHLMAITRHGINR E G LM
Sbjct: 532 LGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLM 591
Query: 4249 RCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEI-- 4422
RCSFEETV+ILM+AA+ +E D VKGV+ENI+LGQL GTG F++ L+ + K I
Sbjct: 592 RCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIAL 651
Query: 4423 --------------------------------------PQNVVMGGGF------------ 4452
P N G F
Sbjct: 652 PEPSNVSYPDTPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFRGDFSPSAMNSPGYNA 711
Query: 4453 ---YGS----FAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNT 4608
YGS F SP+ SP++SP + +PT ++SPT+ SP +SP +
Sbjct: 712 NKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPS 769
Query: 4609 DGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
SPF +SP SP + SP +PSY SP YSP+SP +
Sbjct: 770 YSPTSPF----YSPTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 805
Score = 51.2 bits (121), Expect = 3e-04
Identities = 36/93 (38%), Positives = 49/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 809 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 862
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P+SP + SP +PSY SP YSPSSP F
Sbjct: 863 PSSP-----SYSPSSPSYSPSSPS-YSPSSPTF 889
Score = 50.1 bits (118), Expect = 6e-04
Identities = 35/93 (37%), Positives = 48/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSP-GAGFSPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP +SP + SP +S
Sbjct: 802 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYS 855
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSPSSP +
Sbjct: 856 PTSP-----SYSPSSPSYSPSSPS-YSPSSPSY 882
Score = 49.3 bits (116), Expect = 0.001
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 4471 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGF-SPAGNTDGGASPFNEGGWS 4647
SPS SP++SP + +PT ++SPT+ SP + F SP + SP +S
Sbjct: 739 SPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPFYSPTSPSYSPTSP----SYS 792
Query: 4648 PASPGDPLGALSPRTPSYGGMSPGVYSPSSPQF 4746
P SP + SP +PSY SP YSP+SP +
Sbjct: 793 PTSP-----SYSPTSPSYSPTSPS-YSPTSPSY 819
>gi|13274099|emb|CAC33856.1| RNA polymerase II largest subunit [Glugea
anomala]
Length = 884
Score = 671 bits (1732), Expect = 0.0
Identities = 386/830 (46%), Positives = 519/830 (62%), Gaps = 18/830 (2%)
Frame = +1
Query: 241 GHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIY 420
GH++L KPVFH+GFL + K+L VCFYC +L K E + +SKK L +
Sbjct: 1 GHMDLIKPVFHVGFLNRIKKVLETVCFYCSKL---KCYDVEDETKRNPNYDSKKNLNFWW 57
Query: 421 DLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRVGIDINAEWKKNVN 600
LCK K+ C C QP +R G+ + A K
Sbjct: 58 TLCKTKNCCMH-------------------------CSSKQPLIKRDGLTLTAFIK---G 89
Query: 601 EDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXT 780
E++ E K++L E+VL + ++I+ + ++G D +++RPEWMI +
Sbjct: 90 EESSEGKVLLNGEKVLSILKRISKTESELMGFDEKYSRPEWMIISVLNVTPMSVRPSVVL 149
Query: 781 FGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLP 960
G+ + +DDLTHKLSDI+K N+ L+R E GA H++ D LLQ+HVATL+DN IPGLP
Sbjct: 150 EGTLRGEDDLTHKLSDIVKCNKNLERYEKEGAPGHIIRDYENLLQYHVATLMDNTIPGLP 209
Query: 961 TATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQ 1140
+ QK GRPLKSI RLKGKEGRIRGNLMGKRVDFSAR+VI+ D NL +D VGVP IA+
Sbjct: 210 QSLQKSGRPLKSISARLKGKEGRIRGNLMGKRVDFSARSVISPDSNLSLDEVGVPLQIAK 269
Query: 1141 NLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHPRAADLHLQPGYRV 1308
TFPE VT FN++KLQ+L++ G +YPGA +E+G ++DLRY+ ++L L G V
Sbjct: 270 IHTFPEKVTSFNLEKLQKLIDNGPFKYPGANFVTREDGQKIDLRYN--KSNLILTIGCIV 327
Query: 1309 ERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLP 1488
ERHM D+++FNRQP+LHKMSMM H+ +I+ TFR+ LSVTSPYNADFDGDEM L
Sbjct: 328 ERHMTSEDVVLFNRQPSLHKMSMMAHKPRIMEGRTFRL-LSVTSPYNADFDGDEMILQHA 386
Query: 1489 QSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMY 1668
TRAE E + V +I+ Q NKPVMGIVQD+L VR+MTK ++FI+ F + L +
Sbjct: 387 TEYNTRAEWEYLVKVKHNVISCQGNKPVMGIVQDSLVGVRIMTKDNIFIN-EFDFNTLFF 445
Query: 1669 ---LPTWD------GKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGP 1821
P+ D K+ +PAIL+PK L+TG+Q FS ++P N+N
Sbjct: 446 KIQFPSDDLLLQKIKKLKRPAILRPKKLFTGRQAFSFLLP-NIN---------------- 488
Query: 1822 YKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVIN 2001
YK +V I+ G LL G + VG S G+L+HV+ LE Y+I F + +Q +++
Sbjct: 489 YK-----KNEVEIKKGVLLKGSIDKSIVGTSQGSLIHVLCLE-NYKI-LYFINSLQLIVH 541
Query: 2002 AWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTF 2181
+L+ G ++GI DT+ D++T I ++ AK DV ++I ++ ++ PG LR+TF
Sbjct: 542 HFLLIHGFSMGIEDTVTDKSTIKKITESLTMAKLDVFNLINESRKSKIKKLPGMNLRETF 601
Query: 2182 ENKVNQILNDARDRTGSSAQKSLS-----EFNNFXXXXXXXXXXXXINISQVIACVGQQN 2346
E+K+ QILN ARD++G +S S + NN INISQ+IACVGQQN
Sbjct: 602 ESKILQILNKARDKSGKYTSESFSLEKVKKHNNILMMVEAGSKGSLINISQIIACVGQQN 661
Query: 2347 VEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV 2526
VEG RI F RTLPHF KDD PES+GFVENSYL+GL P EF+FHAMGGREGLIDTAV
Sbjct: 662 VEGHRIGFS-NQRTLPHFHKDDNRPESRGFVENSYLSGLRPDEFYFHAMGGREGLIDTAV 720
Query: 2527 KTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVE 2676
KTAETGYIQR LIKAME+ V++DG+VR++ +M+ +YG+DG D +E
Sbjct: 721 KTAETGYIQRSLIKAMENCKVSFDGSVRSN-NEMISYKYGDDGFDASKIE 769
Score = 40.8 bits (94), Expect = 0.38
Identities = 19/45 (42%), Positives = 31/45 (68%)
Frame = +1
Query: 3148 LNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTL 3282
L+ + + + +I+ ++ ++ EMVG LA+QS+GEPATQMTL
Sbjct: 840 LSLKHLNTISSKIKKKYFHSLCPLNEMVGTLASQSIGEPATQMTL 884
>gi|38232333|gb|AAR15002.1| RNA polymerase II largest subunit
[Nicoletia meinerti]
Length = 445
Score = 671 bits (1731), Expect = 0.0
Identities = 320/445 (71%), Positives = 378/445 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL A+R MTKRDVF++ MM+LLM+LP WDGK+PQP+ILKPKPLWTGKQVFSLIIPGNV
Sbjct: 1 TLTAIRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPQPSILKPKPLWTGKQVFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ LEL
Sbjct: 61 NMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+ FY +IQTV+N WL+ EGH+IGIGDTIAD TY +IQ I+KAK+DV++VI KA
Sbjct: 121 GHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYQEIQKAIKKAKEDVIEVIHKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGET 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE QN+PT+K +N FE+ F+ D T+ ++LR+ ++EDV++E+ S + IS +E EW QL
Sbjct: 361 VEFQNLPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDVLKELMGSGEVISELEKEWEQLV 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LR+IFP GD K+V PCNLQR
Sbjct: 421 KDREALRQIFPSGDNKVVQPCNLQR 445
>gi|38232303|gb|AAR14987.1| RNA polymerase II largest subunit [Lynceus
sp. JCR-2003]
Length = 445
Score = 671 bits (1731), Expect = 0.0
Identities = 319/445 (71%), Positives = 382/445 (85%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TLC VR MTKRDVF++ MM LLM+LPTWDGK+PQPAILKP+P WTGKQ+F+LIIPG+V
Sbjct: 1 TLCGVRKMTKRDVFLEKEQMMTLLMFLPTWDGKMPQPAILKPRPQWTGKQLFTLIIPGHV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED+GPYKWISPGDTKV++E+GEL+ GI+C KT+G SAG+LLH++ +EL
Sbjct: 61 NLIRTHSTHPDEEDAGPYKWISPGDTKVMVENGELIMGILCKKTLGASAGSLLHIIFMEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G++ FY +IQTV+NAWL+ EGH+IGIGDTIAD TYLDIQ TI+KAK+DV++VI+KA
Sbjct: 121 GHQQCGLFYGNIQTVVNAWLLLEGHSIGIGDTIADPQTYLDIQATIKKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGET 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+K +N FE F+ D ++ +++R+ +SEDV REI S D + +E EW QL+
Sbjct: 361 VEFQSLPTVKLSNRSFETKFKFDPSNERYVRRLFSEDVAREIMGSADVYTEIEKEWEQLK 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LR+IFP G+ K+VLPCNLQR
Sbjct: 421 KDRDCLREIFPTGENKVVLPCNLQR 445
>gi|31127044|gb|AAF26666.2| RNA polymerase II largest subunit
[Milnesium tardigradum]
Length = 445
Score = 667 bits (1722), Expect = 0.0
Identities = 319/445 (71%), Positives = 376/445 (83%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ +M LLM+LP WDG++PQ AILKPK LWTGKQ+FSLIIPGN+
Sbjct: 1 TLTAVRKMTKRDVFLEKDEVMQLLMWLPIWDGRLPQAAILKPKALWTGKQIFSLIIPGNI 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPYK+ISPGDTKVIIEH +LLSGI+C K++G S+G+L+H+V LEL
Sbjct: 61 NLIRTHSTHPDEEDDGPYKYISPGDTKVIIEHSQLLSGIICKKSLGTSSGSLVHIVFLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+A FYSHIQTV+N WL+ EGH+IGIGDTIAD TY +IQ+TIRKAK DVV+VIEKA
Sbjct: 121 GHEVAGKFYSHIQTVVNNWLLIEGHSIGIGDTIADPQTYKEIQHTIRKAKLDVVEVIEKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGN+LRQTFEN VN+ILNDARD+TG SAQKSLS+FNNF IN
Sbjct: 181 HNDELEPTPGNSLRQTFENSVNRILNDARDKTGGSAQKSLSDFNNFKAMVVAGSKGSKIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFRHRTLPHFI DDYGPES+GFVENSYLAGLTPSEFFFH+
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAGLTPSEFFFHS 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMES MV YDGTVRN+ +VQLRYGEDGLD
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESTMVQYDGTVRNAHQSLVQLRYGEDGLDACA 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q +PTMKPNNA FE+ FRM L ++K LRK Y ++V+++ + + +++ E+SQL
Sbjct: 361 VEFQTLPTMKPNNASFEKRFRMHLNNDKLLRKLYEPEIVQDLVSNPEVAXILDQEFSQLR 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR +R +FP GD+++VLPCNL R
Sbjct: 421 KDREAVRSVFPTGDSRVVLPCNLSR 445
>gi|31127050|gb|AAC03139.2| RNA polymerase II largest subunit
[Periplaneta americana]
Length = 468
Score = 667 bits (1722), Expect = 0.0
Identities = 321/468 (68%), Positives = 390/468 (82%)
Frame = +1
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTV 1995
GP+KWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ LELG+E+ FY +IQTV
Sbjct: 1 GPFKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTV 60
Query: 1996 INAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQ 2175
+N WL+ EGH+IGIGDTIAD TYL+IQ I+KAK+DV++VI+KAHN +LEPTPGNTLRQ
Sbjct: 61 VNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQ 120
Query: 2176 TFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVEG 2355
TFEN+VN+ILNDARD+TG SA+KSL+E+NN INISQVIACVGQQNVEG
Sbjct: 121 TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 180
Query: 2356 KRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 2535
KRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA
Sbjct: 181 KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 240
Query: 2536 ETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAV 2715
ETGYIQRRLIKAMESVMV+YDGTVRNS+ Q++QLRYGEDGL G VE QN+PT+K +N
Sbjct: 241 ETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKA 300
Query: 2716 FERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDA 2895
FE+ F+ D T+ ++LR+ ++ED+++E+ S D IS +E EW QL +DR LR+IFP G++
Sbjct: 301 FEKKFKFDPTNERYLRRIFNEDILKELMGSGDVISELEKEWEQLVKDREALRQIFPSGES 360
Query: 2896 KIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQY 3075
K+VLPCNLQR+IWN QKIF ++ R P +LSPL VI GV +L KK IIV+G+D +SKQA
Sbjct: 361 KVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVSDLLKKCIIVAGDDHLSKQANE 420
Query: 3076 NATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQP 3219
NATLL L+RSTLCTK + + +L+SEAF+WL+GEIE+RFQQA P
Sbjct: 421 NATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSP 468
>gi|31127016|gb|AAF26628.2| RNA polymerase II largest subunit
[Eumesocampa frigilis]
Length = 445
Score = 667 bits (1721), Expect = 0.0
Identities = 316/445 (71%), Positives = 378/445 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ M ++LM+LP WDGK+PQPAILKPKPLWTGKQVFSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEKEQMFNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHS HPD ED GPYKWISPGDTKV++EHG+L+ GI+C KT+G SAG+LLH+ +EL
Sbjct: 61 NMIRTHSAHPDEEDDGPYKWISPGDTKVMVEHGDLVMGILCKKTLGTSAGSLLHICFVEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+ FY +IQTVIN WL+ EGH+IGIGD+IAD TYL+IQ TI+KAK+DV++VI+KA
Sbjct: 121 GHEVCGQFYGNIQTVINNWLLLEGHSIGIGDSIADPQTYLEIQKTIKKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEFFFHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGT+RNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEH 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+K +N FE+ F+ D ++ ++LR+ ++ED++RE+ S D IS +E EW QL
Sbjct: 361 VEFQSLPTVKLSNRAFEKKFKFDPSNERYLRRVFTEDIMREVMGSGDVISALEREWGQLS 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LR+IFP G+ K+VLPCNL R
Sbjct: 421 SDRESLRQIFPSGENKVVLPCNLHR 445
>gi|38232241|gb|AAR14956.1| RNA polymerase II largest subunit
[Chthamalus fragilis]
Length = 445
Score = 664 bits (1712), Expect = 0.0
Identities = 315/445 (70%), Positives = 380/445 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ MM+LLM+LPTWDGK+P PA+LKP+PLWTGKQ+FSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEQEEMMNLLMFLPTWDGKIPVPAVLKPRPLWTGKQLFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHS HPD ED GPYKWISPGDTKV++++GEL+ GI+C K++G SAG+LLH+ LEL
Sbjct: 61 NMIRTHSVHPDDEDHGPYKWISPGDTKVLVDNGELIMGILCKKSLGASAGSLLHICWLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+EIA +FY IQ+V+NAWL+ EGH+IGIGDTI+D TY DIQ TIRKAK DV+ VIEKA
Sbjct: 121 GHEIAGHFYHDIQSVVNAWLLLEGHSIGIGDTISDPETYSDIQKTIRKAKDDVIQVIEKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN VN+ILNDARD+TG+SA+ SL E+NN IN
Sbjct: 181 HNDELEPTPGNTLRQTFENHVNRILNDARDKTGASAKDSLREYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP+EF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGT+RNS+AQ+VQLRYGEDGL G +
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTLRNSVAQLVQLRYGEDGLAGEF 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+K ++A F R F+ + T+ + LR+ + ED+VR++ S + I +E EW QL
Sbjct: 361 VEFQSLPTIKLSDAAFRRKFKFETTNERQLRRVFQEDIVRDLMGSGEMIGELEREWEQLS 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR+ LR+IFP G++++VLPCNL+R
Sbjct: 421 KDRQELRQIFPTGESRVVLPCNLER 445
>gi|38232349|gb|AAR15010.1| RNA polymerase II largest subunit [Podura
aquatica]
Length = 445
Score = 661 bits (1705), Expect = 0.0
Identities = 313/445 (70%), Positives = 376/445 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL VR MTKRDVF+D MM+LLM+LP WDGK+PQPAILKPKPLWTGKQ+F+LIIPGN+
Sbjct: 1 TLTGVRKMTKRDVFLDKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFTLIIPGNI 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTH+THPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ +EL
Sbjct: 61 NLIRTHATHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFVEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+ FY +IQTV+N WL+ EGH+IGIGDTIAD TYL+IQ TI+KAK+DV++VI+KA
Sbjct: 121 GHEVCGQFYGNIQTVVNNWLLYEGHSIGIGDTIADPNTYLEIQKTIKKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVM++YDGTVRNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMIHYDGTVRNSVGQLIQLRYGEDGLAGEA 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+K +N FE F++DL++ + + Y+++V+++I S IS +E EW QL
Sbjct: 361 VEFQSLPTIKLSNKAFESKFKLDLSNERKXKIYYNDEVMKDIMSSGKVISAIEREWKQLA 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LRKIFP G+ K+VLPCNL R
Sbjct: 421 SDREDLRKIFPTGENKVVLPCNLSR 445
>gi|38232279|gb|AAR14975.1| RNA polymerase II largest subunit [Lepas
anserifera]
Length = 445
Score = 660 bits (1704), Expect = 0.0
Identities = 313/445 (70%), Positives = 379/445 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ MM++LM+LPTWDGK+P PAILKP+P+WTGKQ+FSLIIPGNV
Sbjct: 1 TLTAVRKMTKRDVFLEKEEMMNMLMFLPTWDGKIPVPAILKPRPMWTGKQLFSLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD EDSGPYKWIS GDTKV++++GEL+ GI+C K++G SAG+LLH+ LEL
Sbjct: 61 NMIRTHSTHPDDEDSGPYKWISVGDTKVLVDNGELIMGILCKKSLGASAGSLLHICWLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+EIA +FY IQ+V+NAWL+ EGH+IGIGDTI+D TY DIQNTIRKAK DV+ VIEKA
Sbjct: 121 GHEIAGHFYHDIQSVVNAWLLYEGHSIGIGDTISDPDTYTDIQNTIRKAKGDVIQVIEKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG+SA+ SL E+NN IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGASAKNSLKEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPH+IKDDYGPES+GFVENSYLAGLTP+EF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHYIKDDYGPESRGFVENSYLAGLTPTEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS++Q+VQLRYGEDGL G +
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQLVQLRYGEDGLAGEF 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q + T+K ++A F R ++ + T+ + LR+ + ED+VR++ S D I +E EW L
Sbjct: 361 VEFQGLSTIKLSDAAFRRRYKFETTNERHLRRVFQEDIVRDLMGSGDMIMALEKEWDTLS 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LR+IFP G++++VLPCNL+R
Sbjct: 421 KDRETLRQIFPTGESRVVLPCNLER 445
>gi|38232235|gb|AAR14953.1| RNA polymerase II largest subunit [Artemia
salina]
Length = 445
Score = 660 bits (1704), Expect = 0.0
Identities = 313/445 (70%), Positives = 372/445 (83%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TLCAVR MTKRDVF++ MM LLMYLPTWDGK+PQPAILKPKPLWTGKQ+F+LIIPG V
Sbjct: 1 TLCAVRKMTKRDVFLEKEQMMTLLMYLPTWDGKLPQPAILKPKPLWTGKQLFTLIIPGKV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N+++THSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG++LH++ LEL
Sbjct: 61 NMMKTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSILHIIFLEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G++I FY +IQTV+N WL+ EGH+IGIGDTIAD TY IQ TI+KAK+DV+DVI KA
Sbjct: 121 GHDICGKFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYNSIQTTIKKAKEDVIDVITKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN++LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+ SL+E+NN IN
Sbjct: 181 HNNELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKNSLTEYNNLKAMVVSGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAME+ MV YDGTVRNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMEACMVAYDGTVRNSVGQVIQLRYGEDGLAGEL 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q++PT+K +N FE +R D ++ + LRK ++EDV + + + I+ +E EW L
Sbjct: 361 VEFQSLPTIKLSNRAFESKYRFDPSNERQLRKTFTEDVTKSLLGDSEVITEIEKEWEALV 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LRK+FP G+ K+VLPCNLQR
Sbjct: 421 KDREALRKVFPSGENKVVLPCNLQR 445
>gi|38232339|gb|AAR15005.1| RNA polymerase II largest subunit
[Orchesella imitari]
Length = 445
Score = 660 bits (1704), Expect = 0.0
Identities = 315/445 (70%), Positives = 372/445 (82%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL VR MTKRDVF+D MM+LLM+LP WDGK+PQPAI KP PLWTGKQ+F+LIIPGNV
Sbjct: 1 TLTGVRKMTKRDVFLDKEQMMNLLMFLPIWDGKMPQPAIHKPIPLWTGKQLFTLIIPGNV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N +R HSTHPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G SAG+LLH+ +EL
Sbjct: 61 NCIREHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICVVEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E+A FY +IQTV+N WL+ EGH+IGIGDTIAD TY +IQ TIRKAK+DV++VI+KA
Sbjct: 121 GHEVAGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPETYKEIQKTIRKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN +LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGT+RNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEH 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q +PT+K +N FE F+ D T+ + LR+ + E+V+++I S + IS +E EW L+
Sbjct: 361 VEFQTLPTVKLSNRAFENKFKFDPTNERHLRRVFDEEVMKDIMGSGEVISAIEKEWDLLQ 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
DR LR+IFP GD K+VLPCNLQR
Sbjct: 421 RDREALRQIFPAGDNKVVLPCNLQR 445
>gi|13274166|emb|CAC33858.1| RNA polymerase II largest subunit [Loma
acerinae]
Length = 894
Score = 657 bits (1696), Expect = 0.0
Identities = 379/848 (44%), Positives = 511/848 (59%), Gaps = 36/848 (4%)
Frame = +1
Query: 241 GHLELAKPVFHIGFLTKTLKILRCVCFYCGRLL-------IDKSAPRVLEIL----KKTG 387
GH++L KPVFH+G++ K K+L VCFYC RL ID V+E + KK
Sbjct: 1 GHMDLVKPVFHVGYMNKIKKVLETVCFYCSRLKGYDVSNSIDAEMSHVVETIVSEEKKEN 60
Query: 388 TNSKKRLTMI---YDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRR 558
+KK++ + + LCKAK+ C C QP +R
Sbjct: 61 LKNKKKIKSLNFWWSLCKAKTACMH-------------------------CQSKQPLIKR 95
Query: 559 VGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTX 738
G+ + A K E++ E K++L E+V +F++I+ E+ ++G D +++RPEWMI +
Sbjct: 96 DGLSLTAFIK---GEESTEGKVILNGEKVSSIFKRISTEENEMLGFDEKYSRPEWMIISV 152
Query: 739 XXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQF 918
G+ + +DDLTHKLSDI+K N+ L+++E GA H++ D LLQ+
Sbjct: 153 LNVHAMSVRPSVVLEGTLRGEDDLTHKLSDIVKCNKNLEKHEKEGAPGHIIRDYENLLQY 212
Query: 919 HVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPN 1098
HVATL+DN IPGLP + QK GRPLKSI RLKGKEGR+RGNLMGKRVDFSAR+VI+ D N
Sbjct: 213 HVATLMDNSIPGLPQSLQKSGRPLKSISARLKGKEGRMRGNLMGKRVDFSARSVISPDSN 272
Query: 1099 LPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK---ENGARVDLRYHP 1269
L +D VGVP IA+ TFPE VT FN+ KLQ+L++ G +YPGA + +DLRY+
Sbjct: 273 LSLDEVGVPIQIAKIHTFPEKVTSFNIQKLQKLIDNGPNKYPGANFVTRETSEIDLRYNK 332
Query: 1270 RAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYN 1449
+ + R+ R I ++ Q L MSMM H+ + +P TFR+NLSVT+PYN
Sbjct: 333 IS-----RTNNRMHRRATHDSEISYSLQTLLCIMSMMAHKPRFMPGRTFRLNLSVTTPYN 387
Query: 1450 ADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 1629
ADFDGDEMNLH+PQS TRAE+E + V +++ Q NKPVMGIVQD+L V++MT +
Sbjct: 388 ADFDGDEMNLHMPQSYNTRAELEYLVKVKHNVVSCQGNKPVMGIVQDSLVGVKIMTGDSI 447
Query: 1630 F------------IDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVN 1773
F ID+P LLM L + +PAIL+PK L+TGKQVFS ++P +N
Sbjct: 448 FFDLFNLNKLFFQIDFPDSNTLLMKLAYKE----RPAILRPKKLFTGKQVFSFLLP-EIN 502
Query: 1774 VLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELG 1953
R GD V+++ G LL G + K VG S G+L+HV+ LE
Sbjct: 503 YHR-------------------GD--VLVKKGILLHGSIDKKIVGTSQGSLIHVLCLE-N 540
Query: 1954 YEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAH 2133
YEI +F++ +Q +++A+L+ G ++GI D + D T I +I+KAK D +IE+
Sbjct: 541 YEI-LHFFNSLQLIVHAFLLMHGFSMGIEDAVTDTYTIEKITESIQKAKLDAFYLIEECR 599
Query: 2134 NDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLS-------EFNNFXXXXXXXX 2292
++ PG R+TFE+++ QILN ARD +G S + FNN
Sbjct: 600 KGQMKKLPGMNFRETFESRITQILNKARDTSGRYTSDSFAPEYRKGKPFNNILMMVEAGS 659
Query: 2293 XXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPS 2472
INISQ+IACVG QNVEG RI F RTLPHF KDD PES+GFVENSYL+GL P
Sbjct: 660 KGSLINISQIIACVGPQNVEGHRIGFS-AQRTLPHFHKDDNRPESRGFVENSYLSGLRPD 718
Query: 2473 EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGED 2652
EF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAME+ +++DG+VR S +++ YG+D
Sbjct: 719 EFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMENCKISFDGSVR-SEQEIISFNYGDD 777
Query: 2653 GLDGMWVE 2676
G D +E
Sbjct: 778 GFDAAKIE 785
Score = 49.3 bits (116), Expect = 0.001
Identities = 25/63 (39%), Positives = 43/63 (67%)
Frame = +1
Query: 3094 NILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQ 3273
N+++++ + T+N +L+ L+ +++SR++ A+ EMVG LA+QS+GEPATQ
Sbjct: 833 NLVIKAYV-TENTPRLQRLSLNELTELIQKVKSRYRAALCPMNEMVGTLASQSIGEPATQ 891
Query: 3274 MTL 3282
MTL
Sbjct: 892 MTL 894
>gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1
[Gibberella zeae PH-1]
gi|42544901|gb|EAA67744.1| hypothetical protein FG09860.1 [Gibberella
zeae PH-1]
Length = 2443
Score = 657 bits (1695), Expect = 0.0
Identities = 473/1466 (32%), Positives = 724/1466 (49%), Gaps = 43/1466 (2%)
Frame = +1
Query: 118 EVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTL 297
++ N P G +D R G ++GRC TC +L DC GHFGH+ L P FH+G+L +
Sbjct: 1044 DIENNRAPYRHGPLDSRLGTSSKQGRCSTCQESLKDCNGHFGHVRLPLPAFHVGYLRFIM 1103
Query: 298 KILRCVCFYCGRLLIDK-SAPRVLEILKKTGTNSKKRLTM---IYDLCKAKSVCEGAAXX 465
IL+ +C CGR+L+D+ + L+ L++ ++ +R + I + C+ C
Sbjct: 1104 SILQEICKDCGRVLLDEPDRQQFLKDLRRPFLDNLRRTQICKRINEQCRKVKTCPYCGSL 1163
Query: 466 XXXXXXXXXXXXXXXXXVAGGCG---RYQPSYRRVGID--INAEWKKNVNEDTQERKIM- 627
VA + P ++ D N ++N D RK M
Sbjct: 1164 NGQIRKIGVLKLAHDKFVAYNKSTSIKKTPPESKIKFDNSFNEAKRENPELDKHLRKAME 1223
Query: 628 -LTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXXXXXXXXXXXXXXTFGSAKNQD 804
L RVL +F+ I+ D ++G+DP RPE I +A N+D
Sbjct: 1224 DLNPLRVLNLFKMISPTDCELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQ-DNASNED 1282
Query: 805 DLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKG-G 981
D+T KL+DI+ + ++ G+ + + LQ +A V++ +PGL Q G G
Sbjct: 1283 DITTKLADIVWVSGMIRSALQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQ---QPGFG 1339
Query: 982 RPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEI 1161
+ + QRLKGK+GR RGNL GKRVDFS RTVI+ DPNL ID V VP +A+NLT+PE
Sbjct: 1340 KTTRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPER 1399
Query: 1162 VTPFNVDKLQELVNRGDTQYPGAK------ENGARVDLRYHPR---AADLHLQPGYRVER 1314
V N++KL++ V G +PGA+ E G L++ R A DL G VER
Sbjct: 1400 VQRHNIEKLRQCVKNGPDVWPGAQRVIKSDEGGYLQSLKFGNREYIARDLKF--GDIVER 1457
Query: 1315 HMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQS 1494
H++D DI++FNRQP+LHK+S+M H K+ PW TFR+N V PYNADFDGDEMNLH+PQ+
Sbjct: 1458 HLEDNDIVLFNRQPSLHKLSIMSHLAKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQT 1517
Query: 1495 LETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLP 1674
E RAE + + L TP+ +PV+ QD + A +++ +D F D L M++
Sbjct: 1518 EEARAEAINLMGIKHNLATPKNGEPVIAATQDFITAAYLLSGKDRFFDRKTFTYLCMHM- 1576
Query: 1675 TWDGK----VPQPAILKPKPLWTGKQVFSLII------PGNVNV---LRTHSTHPDSEDS 1815
DGK +P PAI+ P+ LWTGKQ+F +++ P VN+ +T+ P
Sbjct: 1577 -MDGKTHLDLPPPAIIAPQSLWTGKQLFGMLMRPNKDSPVKVNLDAKCKTYKARP----- 1630
Query: 1816 GPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSA-GNLLHVVTLELGYEIAANFYSHIQT 1992
G + P D +++ + E++ G + TVG ++ +V+ + G + A + +
Sbjct: 1631 GQCPDMDPNDGWLVVRNSEVMCGRMDKSTVGDGKKDSIFYVILRDFGPDEAVTAMNRLAK 1690
Query: 1993 VINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLR 2172
+ L G +IGIGD ++ + + A + D+IE LE G
Sbjct: 1691 LCARQLTNHGFSIGIGDVFPPESLIQEKERLAAAAYKQCDDLIETFKAGKLEKAAGCNQE 1750
Query: 2173 QTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIACVGQQNVE 2352
Q+ EN ++ IL+ R + GS ++LS N +N++Q++A VGQQ +
Sbjct: 1751 QSLENFMSGILSKVRQQAGSYCVETLSRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIG 1810
Query: 2353 GKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 2532
G R+ GF+ RTLPHF K+ P SKGFV+NS+ +GL+P+EF FHAM GREGL+DTAVKT
Sbjct: 1811 GARVADGFQDRTLPHFHKNARQPPSKGFVKNSFYSGLSPTEFIFHAMSGREGLVDTAVKT 1870
Query: 2533 AETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNA 2712
AETGY+ RRL+K++E + YD TVR S +VQ ++G D LD + +E P
Sbjct: 1871 AETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQFQFGADKLDPVDMEGSAAPVHFERTW 1930
Query: 2713 VFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE-EDRRLLRKIFPRG 2889
+ +D T+ + + D +R + S+LE E RR +RK G
Sbjct: 1931 THAQSLTVDNTET-----SMTPDEIRSFCD------------SKLEHERRRYVRKGLLGG 1973
Query: 2890 DAKIVLPCNLQRLIWNAQKIFKVD----LRKPVNLSPLHV--ISGVRELSKKLIIVSGND 3051
+ L + + +D R + HV ++ E +KL G+
Sbjct: 1974 EV----------LDYEDTSDYGIDEHEGARGFLKAIERHVEALASKLERVRKLAGFEGDR 2023
Query: 3052 EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMV 3231
I AQ +A + L + +C + ++++A +PG V
Sbjct: 2024 MIRPTAQDHADRTAKVTLSTLQLFIKLCLE-----------------KYKKAHVEPGHAV 2066
Query: 3232 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAA 3411
GA+ A S+GEP TQMTL TFH+AGV+ ++T GVPR+KEIIN SK + TP +T L
Sbjct: 2067 GAVGAHSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKAISTPVITCPLEN-- 2124
Query: 3412 AKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVS-IFYEMPDHDLSR 3588
+ E A+ V ++E T + + + N V+ D +S + + +D++
Sbjct: 2125 NEQIEAARVVKGRIEKTYISDILRFVEDEWRTTEGNVVLQIDPTALSDMHLGIGPYDIAE 2184
Query: 3589 TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK 3768
++++ R D + + I R+ +D A++ R + A +
Sbjct: 2185 AICKQRKLKVQRD---DLSIDGDRIIVRVRD---------ISDPAAKRTATRSKAAAAES 2232
Query: 3769 GEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF 3948
G D+ LR AN L L +P ++ + II T E
Sbjct: 2233 G------------DMLLR---ANFLR-RALPNVPI-------SGYSEATRAIIQTSEQNT 2269
Query: 3949 KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF 4128
+V +G L ++ + + +SN++ E +VLGIEA R I E+ +V+
Sbjct: 2270 HTVL-----VEGYGLRECMTTEGVIGTKASSNNVMECRDVLGIEAARTTIAVEIGSVMG- 2323
Query: 4129 DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE 4308
++ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L EAA +
Sbjct: 2324 -DMNIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTPDHLFEAAAGMKT 2382
Query: 4309 DPVKGVSENIMLGQLARCGTGCFDLV 4386
D ++GVSE I++GQ GTG F +V
Sbjct: 2383 DQIEGVSECIIMGQTMSVGTGAFQVV 2408
>gi|38104101|gb|EAA50718.1| hypothetical protein MG04477.4
[Magnaporthe grisea 70-15]
Length = 1456
Score = 656 bits (1693), Expect = 0.0
Identities = 475/1497 (31%), Positives = 729/1497 (47%), Gaps = 45/1497 (3%)
Frame = +1
Query: 52 VQFGILGPEEIKRMSVAHVEFPEVYE---NGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 222
++FGI ++I V + ++Y+ N P G +D R G + C TCA L
Sbjct: 26 IKFGIQSNQDIVNQGVLEISEKQLYDVENNRTPSRHGPLDHRLGTSSKTAECQTCAQQLQ 85
Query: 223 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEI-LKKTGTNSK 399
+C GHFGH+ L P FHIG+L IL+ +C C R+L+ + R + L++ G ++
Sbjct: 86 NCNGHFGHVRLPLPAFHIGYLRFIQMILQNICKDCARVLLTEPERRKFLLELRRPGIDNL 145
Query: 400 KRLTM---IYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVA---GGCGRYQPSYRRV 561
+R + I + C+ +C V R QP ++
Sbjct: 146 RRTGICKKINEQCRKVKICPYCDSVNGTIRKIGVLKLAHDKFVTFNKSNALRKQPPVSKI 205
Query: 562 GIDINAEW-KKNVNE-DTQERKIM--LTAERVLEVFQQITDEDILVIGMDPQFARPEWMI 729
D + + KK+V E D RK M L +VL +F+ I+ D ++G+DP RPE M
Sbjct: 206 VFDNSFNYAKKSVPELDKHLRKAMEDLNPLKVLTLFKMISPTDCELLGLDPSEGRPE-MF 264
Query: 730 CTXXXXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRL 909
++ N+DD+T KL++I+ ++ + G + +
Sbjct: 265 LWQYLPAPPICIRPSVQQDTSSNEDDITTKLAEIVHIAGLIRGALSKGHPIQTIMEQWEF 324
Query: 910 LQFHVATLVDNCIPGLPTATQKG-GRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 1086
LQ +A V++ +PGL Q G G+ + QRLKGK+GR RGNL GKRVDFS RTVI
Sbjct: 325 LQLQIAIYVNSEVPGLG---QPGFGKMTRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIG 381
Query: 1087 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGA--- 1245
DPNL ID V +P +A+NLT+PE V N++KL+E V G T +PGA K++G
Sbjct: 382 PDPNLAIDQVAIPILVAKNLTYPERVNHINIEKLRECVRNGPTVWPGANAVVKQDGDGEY 441
Query: 1246 RVDLRYHPRA-ADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRM 1422
+++L++ R L+ G VERH++DGDI++FNRQP+LHK+S+M H VK+ PW TFR+
Sbjct: 442 KMNLKFGDRNDVAYRLRYGDVVERHIEDGDIVLFNRQPSLHKLSIMSHFVKVRPWRTFRL 501
Query: 1423 NLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCA 1602
N +PYNADFDGDEMNLH+PQ+ E R E + V L TP+ +P++ QD + A
Sbjct: 502 NECACTPYNADFDGDEMNLHVPQTEEARTEAMTLMGVKYNLATPKNGEPIIAATQDFITA 561
Query: 1603 VRMMTKRDVFIDWPFMMDLLMYLPTWDGK----VPQPAILKPKPLWTGKQVFSLII---- 1758
+++ +DVF D + ++ DGK +P PAILKP+ LWTGKQVFS+++
Sbjct: 562 AYLISLKDVFYDRKTFTYVCQHM-LMDGKDYLDLPPPAILKPRALWTGKQVFSMMLRPNK 620
Query: 1759 --PGNVNV---LRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSA-G 1920
P +N+ R + P G + P D ++I + E++ G + VG
Sbjct: 621 ESPVKINLDAKCREYKPRP-----GECPDMCPNDGWLVIRNSEVMCGKMDKSIVGGGKKD 675
Query: 1921 NLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAK 2100
++ +V+ + G + A S + + L G +IG+GD + + + A
Sbjct: 676 SIFYVILRDFGPDHAVIVMSRLAKLCARTLGNRGFSIGVGDVFPTMELRAEKEVLVANAN 735
Query: 2101 QDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXX 2280
+ ++IE L+ G L QT EN ++ +L+ R G+ ++LS N
Sbjct: 736 RQCDELIETFKAGKLQKAAGCDLEQTLENSISGLLSKVRQLAGAKCVETLSRNNAPLVMA 795
Query: 2281 XXXXXXXXINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAG 2460
IN++Q++A VGQQ + G+R+P GF+ R+LPHF K+ P SKGFV NS+ +G
Sbjct: 796 KSGSKGSEINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFHKNSRQPPSKGFVANSFYSG 855
Query: 2461 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLR 2640
L P+EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD TVR S +VQ +
Sbjct: 856 LLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQFQ 915
Query: 2641 YGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLR---KNYSEDVVREIQESED 2811
+G D LD + +E +P D +N L + V+ ++
Sbjct: 916 FGADKLDPVDMEGSAVPVHFDRTWTHAETLSWDNDENSLLPWEVLQVCDQVIETQRQRYV 975
Query: 2812 GISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPL 2991
LV+ ED+R L I A+ + A ++ K+ RK + LSP
Sbjct: 976 RRDLVDRSKILDYEDQRDL-SIDEHESARGFWKTVYSYVEGRANRLEKI--RKRIGLSPG 1032
Query: 2992 HVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDW 3171
V + SK ++ + AQ N +K++
Sbjct: 1033 GVDDRTADDSKA--------DMQRVAQVNRV-------------------AKISHTTLIK 1065
Query: 3172 LLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 3351
L + + ++A +PG VGA+ AQS+GEP TQMTL TFH+AGV+ ++T GVPR+KEI
Sbjct: 1066 FLKLCQEKHERAKTEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1125
Query: 3352 INVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIA 3531
IN SK + TP +T L K E A+ V ++E T + V + D + V+
Sbjct: 1126 INASKLISTPVITCPLQN--NKQIEAARVVKGRIEKTYVSDVLRFIEDEWKADTGSVVLQ 1183
Query: 3532 EDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIY 3711
D + D L P + K++ + + + +D + V +
Sbjct: 1184 ID------MGALQDMHLGIGLPEIAEAICKYKKLKIEPDDLRLSSDSVE----IVVRNTW 1233
Query: 3712 TDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIE-ANMLSDLTLQGIPAISKVY 3888
D A K R R ED D+ LR +L + + G P ++
Sbjct: 1234 ADTAAAKKAARSRTTTED------------SPDLLLRVNHLRRVLPQVPISGYPEAARAI 1281
Query: 3889 MNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEV 4068
+ ++ K ++ +G L ++ + SN++ E ++
Sbjct: 1282 IQTSEKNEHKVLV-----------------EGYGLRECMTTEGVIGTSVISNNVMEARDI 1324
Query: 4069 LGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 4248
LGIEA R I E+ +V+ G ++ RH+ LL DVMT KG ++ ITR G+++ L
Sbjct: 1325 LGIEAARSTIATEIGSVMGDMG--IDPRHMQLLADVMTYKGDVLGITRFGLSKMRDSVLQ 1382
Query: 4249 RCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV----LDVEKCK 4407
SFE+T D L AA + D ++GVSE I++GQ GTG +V L + CK
Sbjct: 1383 LASFEKTPDHLFAAAAGMKTDKIEGVSECIIMGQTMSVGTGASKIVRALNLKPDDCK 1439
>gi|31127022|gb|AAF26634.2| RNA polymerase II largest subunit
[Hutchinsoniella macracantha]
Length = 445
Score = 655 bits (1691), Expect = 0.0
Identities = 316/445 (71%), Positives = 374/445 (84%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRDVF++ M+LLM+LP+W+GK+PQPAI KPKPLWTGKQ+FSLIIPG+V
Sbjct: 1 TLAAVRKMTKRDVFLEKEQFMNLLMFLPSWNGKLPQPAIFKPKPLWTGKQLFSLIIPGDV 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N++RTHSTHPD ED GPYKWISPGDTKV++E G+L+ GIVC KTVG SAG+LLHVV EL
Sbjct: 61 NIIRTHSTHPDDEDDGPYKWISPGDTKVMVEQGDLIMGIVCKKTVGASAGSLLHVVFQEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E A FY IQTV+N WL+ EGH+IGIGDTIAD TY DI+ I+KAK+DV++VI+KA
Sbjct: 121 GFEAAGYFYGDIQTVVNNWLLYEGHSIGIGDTIADSQTYADIRGAIKKAKEDVIEVIQKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HN +LEPTPGNTLRQTFEN+VN+ILNDARD+TG+SA+KSL+EFNNF IN
Sbjct: 181 HNTELEPTPGNTLRQTFENQVNRILNDARDKTGASAKKSLTEFNNFKIMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTP EF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPMEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGT+RNS+ Q++QLRYGEDGL G
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLCGEQ 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q+MPT+K ++ FER F+ D T+ + LR + ED+V+E+ + IS +E E+ QL
Sbjct: 361 VEFQSMPTIKLSDKAFERKFKFDPTNERNLRHTFVEDIVKEMIGTAHTISDIEQEFEQLA 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
+DR LR+IFP G+ K+VLPCNLQR
Sbjct: 421 KDREALRQIFPTGENKVVLPCNLQR 445
>gi|38232285|gb|AAR14978.1| RNA polymerase II largest subunit [Libinia
emarginata]
Length = 445
Score = 643 bits (1658), Expect = 0.0
Identities = 303/445 (68%), Positives = 367/445 (82%)
Frame = +1
Query: 1591 TLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 1770
TL AVR MTKRD F++ MM+LLM+LPTWDG++PQPAI+KP+PLWTGKQ+F+LIIPGN+
Sbjct: 1 TLTAVRKMTKRDTFLEKSEMMNLLMFLPTWDGRMPQPAIIKPRPLWTGKQLFTLIIPGNI 60
Query: 1771 NVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 1950
N+++TH+ HPD ED GPYKWISPGDTKV++EHGEL+ GI+C KT+G S+G+++H+ +EL
Sbjct: 61 NLVKTHAAHPDDEDDGPYKWISPGDTKVLVEHGELVMGILCKKTLGASSGSMMHLAWMEL 120
Query: 1951 GYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKA 2130
G+E A FY +IQTV+N WL+ EGH+IGIGDTI+D TY IQ+TIRKAK+DV+DVI KA
Sbjct: 121 GHETAGRFYGNIQTVVNNWLLLEGHSIGIGDTISDPNTYRVIQDTIRKAKEDVIDVIHKA 180
Query: 2131 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXIN 2310
HND+LEPTPGNTLRQTFEN+VN+ILNDARD+TG SA+KSL+E+NN IN
Sbjct: 181 HNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNIN 240
Query: 2311 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 2490
ISQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHA
Sbjct: 241 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300
Query: 2491 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTV NS++Q++QL YGEDG G +
Sbjct: 301 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVXNSVSQVIQLXYGEDGXAGEF 360
Query: 2671 VENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLE 2850
VE Q P K +N FE ++ D+ + ++LR+ E+VVR S I +E EW +L
Sbjct: 361 VEFQXXPXXKXSNXRFEXNYXFDVXNERYLRRLXXEBVVRXXXGSPXAIXXLEXEWXKLX 420
Query: 2851 EDRRLLRKIFPRGDAKIVLPCNLQR 2925
EDR LR+ F +GD K+VLPCNL+R
Sbjct: 421 EDRXXLRQXFXKGDTKVVLPCNLER 445
>gi|15920465|ref|NP_376134.1| 884aa long hypothetical DNA-directed RNA
polymerase subunit A' [Sulfolobus tokodaii str. 7]
gi|15621248|dbj|BAB65243.1| 884aa long hypothetical DNA-directed RNA
polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 884
Score = 639 bits (1649), Expect = 0.0
Identities = 358/894 (40%), Positives = 518/894 (57%), Gaps = 16/894 (1%)
Frame = +1
Query: 37 RIVSRVQFGILGPEEIKRMSVAHVEFPEVY-ENGKPKLGGLMDPRQGVIDRRGRCMTCAG 213
+I+ ++FGIL P+EI++MSV + EVY E+G P GG+MDPR GVI+ +C TC
Sbjct: 8 KIIKGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTCGN 67
Query: 214 NLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSA----PRVLEILKK 381
L CPGHFGH+EL +PV H+GF+ ILR C +CGRL I + R+ +K
Sbjct: 68 TLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSRIYHAIKD 127
Query: 382 TGTNSKKRLTMIYDLCKAKSVCEGAAXXXXXXXXXXXXXXXXXXXVAGGCGRYQPSYRRV 561
++ +RL K++ CG Q
Sbjct: 128 RWPSAARRLVEYIKKNAMKNM------------------------ECPHCGEKQ------ 157
Query: 562 GIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTXX 741
I E N E+ +E I LT + E ++I D D ++G DP+++RPEWMI T
Sbjct: 158 -FKIKLEKPYNFYEERKEGVIRLTPSDIRERLERIPDSDYELLGYDPKYSRPEWMILTVL 216
Query: 742 XXXXXXXXXXXXTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFH 921
+ +DDLTHKL DII+ N++L+ + GA ++ D LLQ+H
Sbjct: 217 PVPPITIRPSITIESGIRAEDDLTHKLVDIIRINERLKESIDAGAPQLIIEDLWDLLQYH 276
Query: 922 VATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNL 1101
V+T DN IPG+P A + GRPL+++ QRLKGKEGR RGNL GKRVDFSARTVI+ DPN+
Sbjct: 277 VSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNI 336
Query: 1102 PIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA----KENGARVDLRYHP 1269
ID VGVP IA+ LT PE VT N++++++ V G ++PGA + +G R+DLRY
Sbjct: 337 SIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIRPDGRRIDLRYVK 396
Query: 1270 RAADL--HLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSP 1443
+L L PGY VERH+ DGDI++FNRQP+LH++SMMGH+VK+LP TFR+NL V P
Sbjct: 397 DRKELASSLTPGYIVERHLIDGDIVLFNRQPSLHRISMMGHKVKVLPGRTFRLNLLVCPP 456
Query: 1444 YNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKR 1623
YNADFDGDEMNLH+PQS E AE +EI +V R +ITP+ P+MG QD + ++T +
Sbjct: 457 YNADFDGDEMNLHVPQSEEAIAEAKEIMLVHRNIITPRYGGPIMGGAQDYISGAYLLTVK 516
Query: 1624 DVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPD 1803
+ + +L + + G++ +PAIL P+ +TGKQ+ SL +P + N H
Sbjct: 517 TTLLTREEVTTILG-VTDFMGEIGEPAILAPREYYTGKQIVSLFLPKDFNF------HGQ 569
Query: 1804 SEDSGPYKW----ISPGDTKVIIEHGELLSGIVCSKTVG-KSAGNLLHVVTLELGYEIAA 1968
+ S ++ + P D+ ++I++G LL G++ K +G + ++LH + E G E
Sbjct: 570 ANISKGFRACKNEVCPHDSYIVIKNGILLEGVLDKKAIGNQQPESILHWLVREYGTEYGR 629
Query: 1969 NFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLE 2148
++ + ++ G T+ + D + +I I A + V ++I++ + LE
Sbjct: 630 WVMDNVFKLFIRFIELRGFTMTLDDVTIPPQAFKEIDEQIEVAYKKVEELIKQYNEGTLE 689
Query: 2149 PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFXXXXXXXXXXXXINISQVIA 2328
PG T ++ E+ + + L+ R G A K L FNN +NI+Q+ A
Sbjct: 690 LIPGRTAEESLEDHILETLDQLRKVAGDIATKYLDPFNNVYIMAVTGARGSELNITQMTA 749
Query: 2329 CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 2508
+GQQ+V G+RI G+ RTLPHF D P+++GFV NS+ GLTP E FFHA GGREG
Sbjct: 750 MLGQQSVRGERIKRGYMTRTLPHFKPGDISPDARGFVHNSFTRGLTPIEMFFHAAGGREG 809
Query: 2509 LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 2670
L+DTAVKT+++GY+QRRLI A+ + V YDGTVR+ ++++L YGED + M+
Sbjct: 810 LVDTAVKTSQSGYMQRRLINALSDLRVEYDGTVRSLYGEVIELAYGEDEVHPMY 863