Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F40F8_2
(378 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17533843|ref|NP_496385.1| u6 snRNA-associated Sm-like protein... 250 4e-66
gi|39597338|emb|CAE59566.1| Hypothetical protein CBG02963 [Caeno... 242 1e-63
gi|7657313|ref|NP_055277.1| Lsm1 protein [Homo sapiens] >gnl|BL_... 100 9e-21
gi|20177947|sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like pro... 99 2e-20
gi|34879178|ref|XP_344537.1| similar to U6 snRNA-associated Sm-l... 98 4e-20
gi|50417210|gb|AAH78334.1| Unknown (protein for MGC:101136) [Dan... 97 7e-20
gi|47209042|emb|CAF91744.1| unnamed protein product [Tetraodon n... 97 1e-19
gi|49072588|ref|XP_400583.1| hypothetical protein UM02968.1 [Ust... 89 2e-17
gi|18394697|ref|NP_564072.1| small nuclear ribonucleoprotein, pu... 87 8e-17
gi|21537395|gb|AAM61736.1| unknown [Arabidopsis thaliana] 87 1e-16
gi|24656769|ref|NP_611559.1| CG4279-PA [Drosophila melanogaster]... 86 1e-16
gi|18400270|ref|NP_566476.1| small nuclear ribonucleoprotein, pu... 84 5e-16
gi|38089163|ref|XP_357867.1| similar to Lsm1 protein [Mus musculus] 81 4e-15
gi|19112312|ref|NP_595520.1| hypothetical protein [Schizosacchar... 81 6e-15
gi|50256061|gb|EAL18788.1| hypothetical protein CNBI0490 [Crypto... 80 7e-15
gi|31241953|ref|XP_321407.1| ENSANGP00000012242 [Anopheles gambi... 80 9e-15
gi|38344547|emb|CAD40963.2| OSJNBa0027P08.15 [Oryza sativa (japo... 79 2e-14
gi|9294633|dbj|BAB02972.1| unnamed protein product [Arabidopsis ... 78 5e-14
gi|46138721|ref|XP_391051.1| hypothetical protein FG10875.1 [Gib... 77 6e-14
gi|50545209|ref|XP_500142.1| hypothetical protein [Yarrowia lipo... 77 8e-14
gi|50413278|ref|XP_457238.1| unnamed protein product [Debaryomyc... 76 1e-13
gi|46438093|gb|EAK97429.1| hypothetical protein CaO19.7290 [Cand... 76 2e-13
gi|8778287|gb|AAF79296.1| F14D16.28 [Arabidopsis thaliana] 74 9e-13
gi|6322337|ref|NP_012411.1| Like Sm protein; the finding that Ls... 74 9e-13
gi|45198309|ref|NP_985338.1| AFL212Cp [Eremothecium gossypii] >g... 73 2e-12
gi|50293209|ref|XP_449016.1| unnamed protein product [Candida gl... 72 2e-12
gi|50309253|ref|XP_454633.1| unnamed protein product [Kluyveromy... 69 2e-11
gi|19173671|ref|NP_597474.1| U6 snRNA-ASSOCIATED SMALL RIBONUCLE... 62 3e-09
gi|46226537|gb|EAK87525.1| small nuclear ribonucleoprotein U6 [C... 60 8e-09
gi|41581243|emb|CAE47892.1| u6 snrna-associated sm-like protein,... 59 2e-08
gi|17544148|ref|NP_500964.1| u6 snRNA-associated Sm-like protein... 57 9e-08
gi|39584186|emb|CAE61561.1| Hypothetical protein CBG05470 [Caeno... 55 3e-07
gi|48475146|gb|AAT44215.1| unknown protein [Oryza sativa (japoni... 54 7e-07
gi|46329906|gb|AAH68881.1| MGC82379 protein [Xenopus laevis] 53 2e-06
gi|15218779|ref|NP_176747.1| small nuclear ribonucleoprotein, pu... 52 2e-06
gi|50728156|ref|XP_416009.1| PREDICTED: similar to U6 snRNA-asso... 52 3e-06
gi|7706425|ref|NP_057284.1| U6 snRNA-associated Sm-like protein ... 52 3e-06
gi|25404943|pir||G96681 protein F1E22.8 [imported] - Arabidopsis... 51 5e-06
gi|47210706|emb|CAF89998.1| unnamed protein product [Tetraodon n... 49 2e-05
gi|50806242|ref|XP_424387.1| PREDICTED: similar to U6 snRNA-asso... 49 2e-05
gi|19076009|ref|NP_588509.1| splicing factor [Schizosaccharomyce... 49 3e-05
gi|23612724|ref|NP_704263.1| u6 snRNA-associated sm-like protein... 48 4e-05
gi|50260523|gb|EAL23178.1| hypothetical protein CNBA5220 [Crypto... 48 5e-05
gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Hepta... 47 9e-05
gi|24655606|ref|NP_647660.1| CG2021-PA [Drosophila melanogaster]... 47 9e-05
gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein hom... 47 9e-05
gi|32420717|ref|XP_330802.1| hypothetical protein [Neurospora cr... 44 0.001
gi|46107166|ref|XP_380642.1| hypothetical protein FG00466.1 [Gib... 43 0.001
gi|18860007|ref|NP_573139.1| CG9742-PA [Drosophila melanogaster]... 43 0.001
gi|48852470|ref|ZP_00306656.1| COG1958: Small nuclear ribonucleo... 43 0.002
gi|38104169|gb|EAA50780.1| hypothetical protein MG04539.4 [Magna... 43 0.002
gi|15229773|ref|NP_187757.1| small nuclear ribonucleoprotein G, ... 42 0.002
gi|37991869|gb|AAR06315.1| putative small nuclear ribonucleoprot... 42 0.002
gi|34394185|dbj|BAC84637.1| putative small nuclear ribonucleopro... 42 0.003
gi|33944811|ref|XP_340553.1| small nuclear ribonucleoprotein pro... 42 0.004
gi|28279736|gb|AAH45532.1| LSM8 protein [Homo sapiens] 42 0.004
gi|134126|sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleo... 42 0.004
gi|50255971|gb|EAL18700.1| hypothetical protein CNBI2880 [Crypto... 41 0.005
gi|7451052|pir||S22826 small nuclear ribonucleoprotein E homolog... 41 0.005
gi|19113214|ref|NP_596422.1| small nuclear ribonucleoprotein [Sc... 41 0.005
gi|15224075|ref|NP_179971.1| small nuclear ribonucleoprotein G, ... 41 0.006
gi|13812409|ref|NP_113527.1| small nuclear ribonucleoprotein SM ... 41 0.006
gi|38099604|gb|EAA46929.1| hypothetical protein MG10740.4 [Magna... 40 0.008
gi|49069702|ref|XP_399140.1| hypothetical protein UM01525.1 [Ust... 40 0.014
gi|17136806|ref|NP_476921.1| CG5352-PA [Drosophila melanogaster]... 39 0.019
gi|38048415|gb|AAR10110.1| similar to Drosophila melanogaster Sm... 39 0.019
gi|46130650|ref|XP_389105.1| hypothetical protein FG08929.1 [Gib... 39 0.019
gi|50306859|ref|XP_453405.1| unnamed protein product [Kluyveromy... 39 0.019
gi|4507133|ref|NP_003087.1| small nuclear ribonucleoprotein poly... 39 0.032
gi|48097428|ref|XP_393781.1| similar to LSM5 homolog, U6 small n... 39 0.032
gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus ... 38 0.041
gi|48103537|ref|XP_392871.1| similar to ENSANGP00000007148 [Apis... 38 0.054
gi|15239727|ref|NP_199698.1| small nuclear ribonucleoprotein, pu... 38 0.054
gi|47201346|emb|CAF87885.1| unnamed protein product [Tetraodon n... 38 0.054
gi|7208221|gb|AAF40115.1| small nuclear ribonucleoprotein B' [Ma... 37 0.070
gi|12643865|sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein... 37 0.070
gi|3142634|gb|AAC78612.1| small nuclear ribonucleoprotein N [Mus... 37 0.070
gi|38150007|ref|NP_937859.1| small nuclear ribonucleoprotein pol... 37 0.070
gi|190247|gb|AAA60151.1| snRNP polypeptide B 37 0.070
gi|337459|gb|AAA36578.1| small nuclear ribonucleoprotein particl... 37 0.070
gi|337461|gb|AAA36579.1| small nuclear ribonucleoprotein particl... 37 0.070
gi|38105138|gb|EAA51600.1| hypothetical protein MG03195.4 [Magna... 37 0.070
gi|45708426|gb|AAH03530.1| SNRPB protein [Homo sapiens] 37 0.070
gi|50426501|ref|XP_461847.1| unnamed protein product [Debaryomyc... 37 0.070
gi|15897658|ref|NP_342263.1| Small nuclear riboprotein protein (... 37 0.070
gi|50422331|ref|XP_459728.1| unnamed protein product [Debaryomyc... 37 0.070
gi|6678053|ref|NP_033251.1| small nuclear ribonucleoprotein B [M... 37 0.070
gi|4507125|ref|NP_003082.1| small nuclear ribonucleoprotein poly... 37 0.070
gi|45382973|ref|NP_989930.1| small nuclear ribonucleoprotein B [... 37 0.092
gi|112305|pir||A35448 small nuclear ribonucleoprotein-associated... 37 0.092
gi|27687269|ref|XP_212806.1| similar to small nuclear ribonucleo... 37 0.092
gi|10720265|sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein... 37 0.092
gi|4507135|ref|NP_003088.1| small nuclear ribonucleoprotein poly... 37 0.092
gi|45331353|gb|AAS57930.1| Lsm8p [Trypanosoma brucei] 37 0.092
gi|16081975|ref|NP_394385.1| hypothetical protein [Thermoplasma ... 37 0.092
gi|17560310|ref|NP_506870.1| u6 snRNA-associated Sm-like protein... 37 0.092
gi|39582859|emb|CAE71635.1| Hypothetical protein CBG18602 [Caeno... 37 0.092
gi|14318502|ref|NP_116636.1| snRNP G protein (the homologue of t... 37 0.092
gi|49085588|ref|XP_404904.1| hypothetical protein AN0767.2 [Aspe... 37 0.092
gi|19075840|ref|NP_588340.1| putative snRNP splicing factor; wit... 37 0.092
gi|47575712|ref|NP_001001198.1| hypothetical protein MGC76201 [X... 37 0.12
gi|32401287|gb|AAP80816.1| U6 snRNA-associated Sm-like protein L... 37 0.12
gi|50540540|ref|NP_991230.1| snRNP-associated protein [Danio rer... 37 0.12
gi|6324182|ref|NP_014252.1| Like Sm-G protein; Lsm7p [Saccharomy... 37 0.12
gi|44890026|emb|CAF32144.1| u6 snrna-associated sm-like protein,... 37 0.12
gi|6320994|ref|NP_011073.1| Like Sm-E protein; Lsm5p [Saccharomy... 37 0.12
gi|27371057|gb|AAH41275.1| Snrpn-prov protein [Xenopus laevis] 36 0.16
gi|15227722|ref|NP_178480.1| small nuclear ribonucleoprotein, pu... 36 0.16
gi|29251532|gb|EAA43013.1| GLP_170_167704_168030 [Giardia lambli... 36 0.21
gi|19115063|ref|NP_594151.1| small nuclear ribonucleoprotein ass... 36 0.21
gi|50303649|ref|XP_451766.1| unnamed protein product [Kluyveromy... 36 0.21
gi|38636805|dbj|BAD03046.1| putative snRNP splicing factor -rela... 36 0.21
gi|13541906|ref|NP_111594.1| Small nuclear ribonucleoprotein (sn... 36 0.21
gi|47207638|emb|CAF90891.1| unnamed protein product [Tetraodon n... 36 0.21
gi|34858687|ref|XP_342517.1| similar to small nuclear ribonucleo... 35 0.27
gi|39582947|emb|CAE73012.1| Hypothetical protein CBG20368 [Caeno... 35 0.27
gi|17509627|ref|NP_493348.1| small nuclear ribonucleoprotein, sm... 35 0.27
gi|49071362|ref|XP_399970.1| hypothetical protein UM02355.1 [Ust... 35 0.27
gi|5870129|gb|AAD54488.1| small nuclear ribonucleoprotein B [Hom... 35 0.27
gi|6730226|pdb|1D3B|B Chain B, Crystal Structure Of The D3b Subc... 35 0.27
gi|5870130|gb|AAD54489.1| small nuclear ribonucleoprotein B' [Ho... 35 0.27
gi|27732753|ref|XP_232769.1| similar to small nuclear ribonucleo... 35 0.35
gi|48840588|ref|ZP_00297514.1| COG0614: ABC-type Fe3+-hydroxamat... 35 0.35
gi|2129363|pir||S62196 hypothetical protein 2 - Methanosarcina b... 35 0.35
gi|50303233|ref|XP_451558.1| unnamed protein product [Kluyveromy... 35 0.35
gi|6912488|ref|NP_036454.1| U6 snRNA-associated Sm-like protein ... 35 0.35
gi|38083018|ref|XP_359370.1| similar to LSM5 homolog, U6 small n... 35 0.35
gi|50732968|ref|XP_418849.1| PREDICTED: similar to LSM5 homolog,... 35 0.35
gi|24581280|ref|NP_722859.1| CG31950-PA [Drosophila melanogaster... 35 0.46
gi|50421915|ref|XP_459516.1| unnamed protein product [Debaryomyc... 35 0.46
gi|50290221|ref|XP_447542.1| unnamed protein product [Candida gl... 35 0.46
gi|14192871|gb|AAK55776.1| Putative small nuclear ribonucleoprot... 35 0.46
gi|46229816|gb|EAK90634.1| hypothetical protein cgd7_3520 [Crypt... 35 0.46
gi|38100589|gb|EAA47695.1| hypothetical protein MG02938.4 [Magna... 35 0.46
gi|47211209|emb|CAF90166.1| unnamed protein product [Tetraodon n... 34 0.60
gi|39593669|emb|CAE61961.1| Hypothetical protein CBG05961 [Caeno... 34 0.60
gi|38082325|ref|XP_356939.1| similar to LSM5 homolog, U6 small n... 34 0.60
gi|50255852|gb|EAL18583.1| hypothetical protein CNBJ0090 [Crypto... 34 0.60
gi|15920417|ref|NP_376086.1| 90aa long hypothetical small nuclea... 34 0.60
gi|47225103|emb|CAF98730.1| unnamed protein product [Tetraodon n... 34 0.60
gi|34900024|ref|NP_911358.1| putative snRNP protein [Oryza sativ... 34 0.60
gi|20093660|ref|NP_613507.1| Small nuclear ribonucleoprotein (sn... 34 0.60
gi|38074190|ref|XP_357162.1| similar to LSM5 homolog, U6 small n... 34 0.60
gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 ... 34 0.60
gi|17544592|ref|NP_502034.1| u6 snRNA-associated Sm-like protein... 34 0.60
gi|48840956|ref|ZP_00297882.1| COG0614: ABC-type Fe3+-hydroxamat... 34 0.78
gi|45191033|ref|NP_985287.1| AER432Cp [Eremothecium gossypii] >g... 34 0.78
gi|14602195|ref|NP_147628.1| homolog of small nuclear ribonucleo... 34 0.78
gi|45201226|ref|NP_986796.1| AGR130Wp [Eremothecium gossypii] >g... 34 0.78
gi|46913515|emb|CAG20301.1| conserved hypothetical protein [Phot... 34 0.78
gi|50550683|ref|XP_502814.1| hypothetical protein [Yarrowia lipo... 34 0.78
gi|32417284|ref|XP_329120.1| hypothetical protein [Neurospora cr... 33 1.0
gi|31212897|ref|XP_312266.1| ENSANGP00000002801 [Anopheles gambi... 33 1.0
gi|15897150|ref|NP_341755.1| Small nuclear riboprotein protein (... 33 1.0
gi|32411457|ref|XP_326209.1| hypothetical protein [Neurospora cr... 33 1.0
gi|19112516|ref|NP_595724.1| putative small nuclear ribonucleopr... 33 1.0
gi|38076462|ref|XP_147856.2| similar to Small nuclear ribonucleo... 33 1.3
gi|50420361|ref|XP_458714.1| unnamed protein product [Debaryomyc... 33 1.3
gi|22328770|ref|NP_680719.1| small nuclear ribonucleoprotein-rel... 33 1.3
gi|23484639|gb|EAA19901.1| putative yir4 protein [Plasmodium yoe... 33 1.3
gi|31248054|ref|XP_316632.1| ENSANGP00000011511 [Anopheles gambi... 33 1.3
gi|32415121|ref|XP_328040.1| hypothetical protein [Neurospora cr... 33 1.3
gi|6320867|ref|NP_010946.1| associated with U1, U2, U4, and U5 s... 33 1.3
gi|49086412|ref|XP_405256.1| hypothetical protein AN1119.2 [Aspe... 33 1.7
gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis t... 32 2.3
gi|47216756|emb|CAG03760.1| unnamed protein product [Tetraodon n... 32 2.3
gi|20093321|ref|NP_619396.1| ABC transporter, solute-binding pro... 32 2.3
gi|50877306|emb|CAG37146.1| similar to penicillin-binding protei... 32 2.3
gi|20090066|ref|NP_616141.1| iron ABC transporter, solute-bindin... 32 2.3
gi|50546793|ref|XP_500866.1| hypothetical protein [Yarrowia lipo... 32 2.3
gi|21358059|ref|NP_648022.1| CG6610-PA [Drosophila melanogaster]... 32 2.3
gi|13160046|emb|CAC32828.1| dJ734P14.2.3 (small nuclear ribonucl... 32 2.3
gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein ass... 32 3.0
gi|495021|gb|AAA28445.1| membrane-associated protein 32 3.0
gi|22024001|ref|NP_523708.2| CG16792-PA [Drosophila melanogaster... 32 3.0
gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein ass... 32 3.0
gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2,... 32 3.9
gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2,... 32 3.9
gi|23508942|ref|NP_701610.1| hypothetical protein [Plasmodium fa... 32 3.9
gi|12585410|sp|O32467|VATB_THESI V-type ATP synthase beta chain ... 32 3.9
gi|7208223|gb|AAF40116.1| truncated small nuclear ribonucleoprot... 32 3.9
gi|38566550|gb|AAR24165.1| At4g18372 [Arabidopsis thaliana] >gnl... 32 3.9
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like ... 32 3.9
gi|49110192|ref|XP_411726.1| hypothetical protein AN7589.2 [Aspe... 32 3.9
gi|15896019|ref|NP_349368.1| Membrane assosiated methyl-acceptin... 31 5.1
gi|49069150|ref|XP_398864.1| hypothetical protein UM01249.1 [Ust... 31 5.1
gi|20129565|ref|NP_609807.1| CG13277-PA [Drosophila melanogaster... 31 5.1
gi|5870115|gb|AAD54483.1| truncated small nuclear ribonucleoprot... 31 5.1
gi|46111729|ref|XP_382922.1| hypothetical protein FG02746.1 [Gib... 31 5.1
gi|38080450|ref|XP_357495.1| similar to small nuclear ribonucleo... 31 5.1
gi|7672991|gb|AAF66690.1| MADS-box transcription factor [Canaval... 31 5.1
gi|38107284|gb|EAA53477.1| hypothetical protein MG07754.4 [Magna... 31 5.1
gi|34862278|ref|XP_343158.1| similar to RIKEN cDNA 0910001B06 [R... 31 5.1
gi|7706423|ref|NP_057283.1| U6 snRNA-associated Sm-like protein ... 31 5.1
gi|39594498|emb|CAE72076.1| Hypothetical protein CBG19162 [Caeno... 31 6.6
gi|49522817|gb|AAH74231.1| Unknown (protein for MGC:83430) [Xeno... 31 6.6
gi|50760908|ref|XP_418176.1| PREDICTED: similar to U6 snRNA-asso... 31 6.6
gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus] 31 6.6
gi|27667342|ref|XP_224630.1| similar to RIKEN cDNA 2310034K10 [R... 31 6.6
gi|15897374|ref|NP_341979.1| Agmatinase (agmatine ureohydrolase)... 31 6.6
gi|32404932|ref|XP_323079.1| hypothetical protein [Neurospora cr... 31 6.6
gi|11266669|pir||T44675 H+-transporting ATP synthase, chain B [i... 30 8.6
gi|13384714|ref|NP_079625.1| LSM7 homolog, U6 small nuclear RNA ... 30 8.6
gi|11497899|ref|NP_069121.1| 3-ketoacyl-CoA thiolase (acaB-7) [A... 30 8.6
gi|31230450|ref|XP_318388.1| ENSANGP00000002741 [Anopheles gambi... 30 8.6
gi|27677236|ref|XP_228350.1| similar to Small nuclear ribonucleo... 30 8.6
gi|50417589|gb|AAH77664.1| Unknown (protein for MGC:89748) [Xeno... 30 8.6
gi|4759158|ref|NP_004588.1| small nuclear ribonucleoprotein poly... 30 8.6
gi|12585392|sp|O06505|VATB_DESSY V-type ATP synthase beta chain ... 30 8.6
gi|23508277|ref|NP_700946.1| U6 snRNA associated Sm-like protein... 30 8.6
gi|48143797|ref|XP_397475.1| similar to CG1249-PA [Apis mellifera] 30 8.6
gi|46105464|ref|XP_380536.1| hypothetical protein FG00360.1 [Gib... 30 8.6
gi|47215802|emb|CAG02856.1| unnamed protein product [Tetraodon n... 30 8.6
gi|21357623|ref|NP_649645.1| CG1249-PA [Drosophila melanogaster]... 30 8.6
gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoel... 30 8.6
gi|49389259|dbj|BAD25221.1| putative LvsC [Oryza sativa (japonic... 30 8.6
>gi|17533843|ref|NP_496385.1| u6 snRNA-associated Sm-like protein
(lsm-1) [Caenorhabditis elegans]
gi|7503076|pir||T22035 hypothetical protein F40F8.9 -
Caenorhabditis elegans
gi|3876945|emb|CAA93263.1| Hypothetical protein F40F8.9
[Caenorhabditis elegans]
Length = 125
Score = 250 bits (639), Expect = 4e-66
Identities = 125/125 (100%), Positives = 125/125 (100%)
Frame = +1
Query: 1 MDLPDPYLPGAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYF 180
MDLPDPYLPGAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYF
Sbjct: 1 MDLPDPYLPGAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYF 60
Query: 181 CETGQGFMLIRGENVELAGEIDDTIETGLTQVSPEEFRRLEDEYIAKNPPKFLKRQAEKT 360
CETGQGFMLIRGENVELAGEIDDTIETGLTQVSPEEFRRLEDEYIAKNPPKFLKRQAEKT
Sbjct: 61 CETGQGFMLIRGENVELAGEIDDTIETGLTQVSPEEFRRLEDEYIAKNPPKFLKRQAEKT 120
Query: 361 EEHDA 375
EEHDA
Sbjct: 121 EEHDA 125