Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F41E7_4
(225 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17567641|ref|NP_509726.1| putative secreted or extracellular ... 45 5e-04
>gi|17567641|ref|NP_509726.1| putative secreted or extracellular
protein precursor (7.7 kD) (XK921) [Caenorhabditis
elegans]
gi|7503185|pir||T22077 hypothetical protein F41E7.4 -
Caenorhabditis elegans
gi|3876937|emb|CAA92127.1| Hypothetical protein F41E7.4
[Caenorhabditis elegans]
Length = 74
Score = 44.7 bits (104), Expect = 5e-04
Identities = 30/74 (40%), Positives = 30/74 (40%)
Frame = +1
Query: 1 MNFVTFFXXXXXXXXXXXXPQRVIEKTTVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
MNFVTFF PQRVIEKTTVI
Sbjct: 1 MNFVTFFLLAVLAVAALAAPQRVIEKTTVIRGGGGGFGGGGFGRPAPFRPPPPRFGPSFG 60
Query: 181 XXQTTIVKQTIIRG 222
QTTIVKQTIIRG
Sbjct: 61 RPQTTIVKQTIIRG 74
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,522,838
Number of Sequences: 1967186
Number of extensions: 405691
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 661,712,633
effective HSP length: 50
effective length of database: 563,353,333
effective search space used: 13520479992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)