Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= F41E7_5
         (339 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17567643|ref|NP_509727.1| putative secreted or extracellular ...    35   0.37


>gi|17567643|ref|NP_509727.1| putative secreted or extracellular
          protein precursor (XK923) [Caenorhabditis elegans]
 gi|7503186|pir||T22078 hypothetical protein F41E7.5 -
          Caenorhabditis elegans
 gi|3876938|emb|CAA92128.1| Hypothetical protein F41E7.5
          [Caenorhabditis elegans]
          Length = 112

 Score = 35.0 bits (79), Expect = 0.37
 Identities = 18/30 (60%), Positives = 18/30 (60%)
 Frame = +1

Query: 1  MNSYSIIXXXXXXXXXXXXPQRVIEKTTII 90
          MNSYSII            PQRVIEKTTII
Sbjct: 1  MNSYSIILLLGLLAAVMAAPQRVIEKTTII 30


  Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
    Posted date:  Aug 11, 2004 12:04 AM
  Number of letters in database: 661,712,633
  Number of sequences in database:  1,967,186

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,323,108
Number of Sequences: 1967186
Number of extensions: 1122128
Number of successful extensions: 2814
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2814
length of database: 661,712,633
effective HSP length: 88
effective length of database: 488,600,265
effective search space used: 11726406360
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


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