Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F43G9_6
(684 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17507315|ref|NP_492334.1| cleavage polyadenylation specific f... 446 e-124
gi|39595588|emb|CAE67089.1| Hypothetical protein CBG12500 [Caeno... 429 e-119
gi|24370468|emb|CAC70149.1| putative pre-mrna cleavage factor [B... 296 3e-79
gi|31199221|ref|XP_308558.1| ENSANGP00000016021 [Anopheles gambi... 286 3e-76
gi|47230369|emb|CAF99562.1| unnamed protein product [Tetraodon n... 283 2e-75
gi|41055411|ref|NP_957411.1| similar to cleavage and polyadenyla... 283 3e-75
gi|31873228|emb|CAD97606.1| hypothetical protein [Homo sapiens] 281 7e-75
gi|5901926|ref|NP_008937.1| cleavage and polyadenylation specifi... 281 7e-75
gi|49522181|gb|AAH75235.1| Unknown (protein for MGC:84447) [Xeno... 281 7e-75
gi|13386106|ref|NP_080899.1| cleavage and polyadenylation specif... 281 7e-75
gi|48145955|emb|CAG33200.1| CPSF5 [Homo sapiens] 279 4e-74
gi|50753607|ref|XP_414063.1| PREDICTED: similar to cleavage and ... 271 1e-71
gi|21355361|ref|NP_648308.1| CG3689-PB [Drosophila melanogaster]... 221 1e-56
gi|32421925|ref|XP_331406.1| hypothetical protein [Neurospora cr... 211 1e-53
gi|12848967|dbj|BAB28154.1| unnamed protein product [Mus musculus] 208 9e-53
gi|38110283|gb|EAA56025.1| hypothetical protein MG01676.4 [Magna... 207 2e-52
gi|46125059|ref|XP_387083.1| conserved hypothetical protein [Gib... 207 2e-52
gi|30686923|ref|NP_194285.2| expressed protein [Arabidopsis thal... 199 3e-50
gi|32488646|emb|CAE03439.1| OSJNBa0032F06.22 [Oryza sativa (japo... 198 1e-49
gi|49117124|ref|XP_412182.1| hypothetical protein AN8045.2 [Aspe... 178 1e-43
gi|50556008|ref|XP_505412.1| hypothetical protein [Yarrowia lipo... 176 5e-43
gi|25354611|pir||C85295 hypothetical protein AT4g25550 [imported... 160 3e-38
gi|7486820|pir||T05792 hypothetical protein M7J2.80 - Arabidopsi... 159 4e-38
gi|49071438|ref|XP_400008.1| hypothetical protein UM02393.1 [Ust... 159 6e-38
gi|18417474|ref|NP_567835.1| expressed protein [Arabidopsis thal... 156 3e-37
gi|50257032|gb|EAL19750.1| hypothetical protein CNBG3780 [Crypto... 152 6e-36
gi|37805958|dbj|BAC99373.1| putative cleavage and polyadenylatio... 128 9e-29
gi|7486231|pir||T08543 hypothetical protein F27B13.60 - Arabidop... 110 2e-23
gi|50363269|gb|AAT75337.1| cleavage factor I 25 kDa [Trypanosoma... 97 2e-19
gi|23613449|ref|NP_703293.1| mRNA cleavage factor-like protein, ... 92 1e-17
gi|32398958|emb|CAD98423.1| hypothetical predicted protein, unkn... 87 4e-16
gi|32967089|gb|AAP92383.1| pre-mRNA cleavage factor I 25 kDa sub... 84 3e-15
gi|50290269|ref|XP_447566.1| unnamed protein product [Candida gl... 37 0.37
gi|18621287|emb|CAD20868.1| PfEMP1 [Plasmodium falciparum] 33 6.9
gi|38080717|ref|XP_358954.1| similar to 40S ribosomal protein S2... 32 9.0
gi|18621285|emb|CAD20867.1| PfEMP1 [Plasmodium falciparum] 32 9.0
>gi|17507315|ref|NP_492334.1| cleavage polyadenylation specific
factor 5 (25.9 kD) (1J193) [Caenorhabditis elegans]
gi|7503337|pir||T22144 hypothetical protein F43G9.5 -
Caenorhabditis elegans
gi|3877104|emb|CAB02106.1| Hypothetical protein F43G9.5
[Caenorhabditis elegans]
Length = 227
Score = 446 bits (1147), Expect = e-124
Identities = 217/227 (95%), Positives = 217/227 (95%)
Frame = +1
Query: 1 MEDIWPTIERTTISASVPEAPANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPER 180
MEDIWPTIERTTISASVPEAPANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPER
Sbjct: 1 MEDIWPTIERTTISASVPEAPANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPER 60
Query: 181 FKRMKDEYEVMGMRRSVEAVLIVHEHSLPHILLLQIGTTFYKXXXXXXXXXXDEISGVTR 360
FKRMKDEYEVMGMRRSVEAVLIVHEHSLPHILLLQIGTTFYK DEISGVTR
Sbjct: 61 FKRMKDEYEVMGMRRSVEAVLIVHEHSLPHILLLQIGTTFYKLPGGELELGEDEISGVTR 120
Query: 361 LLNETLGRTDGETNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKS 540
LLNETLGRTDGETNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKS
Sbjct: 121 LLNETLGRTDGETNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKS 180
Query: 541 TFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFNDSN 681
TFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFNDSN
Sbjct: 181 TFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFNDSN 227