Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= F43G9_6
         (684 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17507315|ref|NP_492334.1| cleavage polyadenylation specific f...   446   e-124
gi|39595588|emb|CAE67089.1| Hypothetical protein CBG12500 [Caeno...   429   e-119
gi|24370468|emb|CAC70149.1| putative pre-mrna cleavage factor [B...   296   3e-79
gi|31199221|ref|XP_308558.1| ENSANGP00000016021 [Anopheles gambi...   286   3e-76
gi|47230369|emb|CAF99562.1| unnamed protein product [Tetraodon n...   283   2e-75
gi|41055411|ref|NP_957411.1| similar to cleavage and polyadenyla...   283   3e-75
gi|31873228|emb|CAD97606.1| hypothetical protein [Homo sapiens]       281   7e-75
gi|5901926|ref|NP_008937.1| cleavage and polyadenylation specifi...   281   7e-75
gi|49522181|gb|AAH75235.1| Unknown (protein for MGC:84447) [Xeno...   281   7e-75
gi|13386106|ref|NP_080899.1| cleavage and polyadenylation specif...   281   7e-75
gi|48145955|emb|CAG33200.1| CPSF5 [Homo sapiens]                      279   4e-74
gi|50753607|ref|XP_414063.1| PREDICTED: similar to cleavage and ...   271   1e-71
gi|21355361|ref|NP_648308.1| CG3689-PB [Drosophila melanogaster]...   221   1e-56
gi|32421925|ref|XP_331406.1| hypothetical protein [Neurospora cr...   211   1e-53
gi|12848967|dbj|BAB28154.1| unnamed protein product [Mus musculus]    208   9e-53
gi|38110283|gb|EAA56025.1| hypothetical protein MG01676.4 [Magna...   207   2e-52
gi|46125059|ref|XP_387083.1| conserved hypothetical protein [Gib...   207   2e-52
gi|30686923|ref|NP_194285.2| expressed protein [Arabidopsis thal...   199   3e-50
gi|32488646|emb|CAE03439.1| OSJNBa0032F06.22 [Oryza sativa (japo...   198   1e-49
gi|49117124|ref|XP_412182.1| hypothetical protein AN8045.2 [Aspe...   178   1e-43
gi|50556008|ref|XP_505412.1| hypothetical protein [Yarrowia lipo...   176   5e-43
gi|25354611|pir||C85295 hypothetical protein AT4g25550 [imported...   160   3e-38
gi|7486820|pir||T05792 hypothetical protein M7J2.80 - Arabidopsi...   159   4e-38
gi|49071438|ref|XP_400008.1| hypothetical protein UM02393.1 [Ust...   159   6e-38
gi|18417474|ref|NP_567835.1| expressed protein [Arabidopsis thal...   156   3e-37
gi|50257032|gb|EAL19750.1| hypothetical protein CNBG3780 [Crypto...   152   6e-36
gi|37805958|dbj|BAC99373.1| putative cleavage and polyadenylatio...   128   9e-29
gi|7486231|pir||T08543 hypothetical protein F27B13.60 - Arabidop...   110   2e-23
gi|50363269|gb|AAT75337.1| cleavage factor I 25 kDa [Trypanosoma...    97   2e-19
gi|23613449|ref|NP_703293.1| mRNA cleavage factor-like protein, ...    92   1e-17
gi|32398958|emb|CAD98423.1| hypothetical predicted protein, unkn...    87   4e-16
gi|32967089|gb|AAP92383.1| pre-mRNA cleavage factor I 25 kDa sub...    84   3e-15
gi|50290269|ref|XP_447566.1| unnamed protein product [Candida gl...    37   0.37
gi|18621287|emb|CAD20868.1| PfEMP1 [Plasmodium falciparum]             33   6.9
gi|38080717|ref|XP_358954.1| similar to 40S ribosomal protein S2...    32   9.0
gi|18621285|emb|CAD20867.1| PfEMP1 [Plasmodium falciparum]             32   9.0


>gi|17507315|ref|NP_492334.1| cleavage polyadenylation specific
           factor 5 (25.9 kD) (1J193) [Caenorhabditis elegans]
 gi|7503337|pir||T22144 hypothetical protein F43G9.5 -
           Caenorhabditis elegans
 gi|3877104|emb|CAB02106.1| Hypothetical protein F43G9.5
           [Caenorhabditis elegans]
          Length = 227

 Score =  446 bits (1147), Expect = e-124
 Identities = 217/227 (95%), Positives = 217/227 (95%)
 Frame = +1

Query: 1   MEDIWPTIERTTISASVPEAPANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPER 180
           MEDIWPTIERTTISASVPEAPANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPER
Sbjct: 1   MEDIWPTIERTTISASVPEAPANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPER 60

Query: 181 FKRMKDEYEVMGMRRSVEAVLIVHEHSLPHILLLQIGTTFYKXXXXXXXXXXDEISGVTR 360
           FKRMKDEYEVMGMRRSVEAVLIVHEHSLPHILLLQIGTTFYK          DEISGVTR
Sbjct: 61  FKRMKDEYEVMGMRRSVEAVLIVHEHSLPHILLLQIGTTFYKLPGGELELGEDEISGVTR 120

Query: 361 LLNETLGRTDGETNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKS 540
           LLNETLGRTDGETNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKS
Sbjct: 121 LLNETLGRTDGETNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKS 180

Query: 541 TFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFNDSN 681
           TFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFNDSN
Sbjct: 181 TFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFNDSN 227




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