Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F56A3_2
(4689 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|25150095|ref|NP_740844.1| putative cytoplasmic protein, Nucle... 2917 0.0
gi|39580111|emb|CAE56130.1| Hypothetical protein CBG23742 [Caeno... 2270 0.0
gi|25150098|ref|NP_740845.1| putative cytoplasmic protein, Nucle... 1695 0.0
gi|50803147|ref|XP_424261.1| PREDICTED: similar to Nucleoporin 1... 47 0.004
gi|22065253|ref|XP_113678.2| nucleoporin 160kDa [Homo sapiens] 44 0.028
gi|41054908|ref|NP_956956.1| hypothetical protein MGC66306 [Dani... 44 0.037
gi|48138419|ref|XP_396893.1| similar to Nuclear pore complex pro... 43 0.063
gi|50510407|dbj|BAD32189.1| mKIAA0197 protein [Mus musculus] 43 0.083
gi|10946932|ref|NP_067487.1| nucleoporin 160; gene trap locus-13... 43 0.083
gi|34856514|ref|XP_230286.2| similar to gene trap locus-13 [Ratt... 43 0.083
gi|30931077|gb|AAH52450.1| Nucleoporin 160 [Mus musculus] >gnl|B... 43 0.083
gi|29429215|sp|Q12769|N160_HUMAN Nuclear pore complex protein Nu... 42 0.11
gi|24583646|ref|NP_609493.1| CG4738-PA [Drosophila melanogaster]... 42 0.11
gi|7513100|pir||G02870 KIAA0197 protein - human (fragment) >gnl|... 42 0.11
gi|32425489|gb|AAH08700.1| NUP160 protein [Homo sapiens] 40 0.54
gi|30690738|ref|NP_198117.2| PWWP domain-containing protein [Ara... 39 1.6
gi|48771528|ref|ZP_00275870.1| COG0841: Cation/multidrug efflux ... 39 1.6
gi|46156773|ref|ZP_00132214.2| COG5295: Autotransporter adhesin ... 37 3.5
gi|12849648|dbj|BAB28429.1| unnamed protein product [Mus musculus] 37 4.6
gi|49067930|ref|XP_398254.1| hypothetical protein UM00639.1 [Ust... 36 7.8
gi|15644589|ref|NP_229642.1| beta transducin-related protein [Th... 36 7.8
gi|47220596|emb|CAG05622.1| unnamed protein product [Tetraodon n... 36 7.8
gi|50793037|ref|XP_427931.1| PREDICTED: similar to SNARE protein... 36 7.8
>gi|25150095|ref|NP_740844.1| putative cytoplasmic protein, Nuclear
Pore complex Protein NPP-6 (npp-6) [Caenorhabditis
elegans]
gi|7504364|pir||T29146 hypothetical protein F56A3.3 - Caenorhabditis
elegans
gi|1707042|gb|AAB37803.1| Nuclear pore complex protein protein 6,
isoform a [Caenorhabditis elegans]
Length = 1562
Score = 2917 bits (7562), Expect = 0.0
Identities = 1480/1562 (94%), Positives = 1480/1562 (94%)
Frame = +1
Query: 1 MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA 180
MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA
Sbjct: 1 MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA 60
Query: 181 RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD 360
RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD
Sbjct: 61 RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD 120
Query: 361 GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED 540
GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED
Sbjct: 121 GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED 180
Query: 541 DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT 720
DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT
Sbjct: 181 DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT 240
Query: 721 MGEVXXXXXXXXXTDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV 900
MGEV TDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV
Sbjct: 241 MGEVGLLGKLLGGTDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV 300
Query: 901 ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI 1080
ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI
Sbjct: 301 ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI 360
Query: 1081 VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL 1260
VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL
Sbjct: 361 VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL 420
Query: 1261 DETQDGELYNPXXXXXXXXXXXXXXXXXXXXYSMKRISFAIQWKKGRVFTDFDWHSVRQF 1440
DETQDGELYNP YSMKRISFAIQWKKGRVFTDFDWHSVRQF
Sbjct: 421 DETQDGELYNPLTAALFSLSALFKSSSAKKTYSMKRISFAIQWKKGRVFTDFDWHSVRQF 480
Query: 1441 TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD 1620
TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD
Sbjct: 481 TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD 540
Query: 1621 NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF 1800
NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF
Sbjct: 541 NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF 600
Query: 1801 WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI 1980
WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI
Sbjct: 601 WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI 660
Query: 1981 PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN 2160
PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN
Sbjct: 661 PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN 720
Query: 2161 AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN 2340
AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN
Sbjct: 721 AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN 780
Query: 2341 IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI 2520
IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI
Sbjct: 781 IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI 840
Query: 2521 KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIRENDFNWFVGVTTEAAIRALL 2700
KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIRENDFNWFVGVTTEAAIRALL
Sbjct: 841 KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIRENDFNWFVGVTTEAAIRALL 900
Query: 2701 SSSEILVLPRRLVLQKQYKVLLTILNSYISETRALKPVITFYRGIAYSGTDHPVKALNSF 2880
SSSEILVLPRRLVLQKQYKVLLTILNSYISETRALKPVITFYRGIAYSGTDHPVKALNSF
Sbjct: 901 SSSEILVLPRRLVLQKQYKVLLTILNSYISETRALKPVITFYRGIAYSGTDHPVKALNSF 960
Query: 2881 QSCLDAFSEGNNALRKAVYFLLPKRFDVAQGKDPVEELTASEYFLTVVRFLQEHNHAEEV 3060
QSCLDAFSEGNNALRKAVYFLLPKRFDVAQGKDPVEELTASEYFLTVVRFLQEHNHAEEV
Sbjct: 961 QSCLDAFSEGNNALRKAVYFLLPKRFDVAQGKDPVEELTASEYFLTVVRFLQEHNHAEEV 1020
Query: 3061 CSVAVKAIENLPIENESVQLISNTLFNHLTNRREWFQSLKLILRTTLRSETRRASIRELL 3240
CSVAVKAIENLPIENESVQLISNTLFNHLTNRREWFQSLKLILRTTLRSETRRASIRELL
Sbjct: 1021 CSVAVKAIENLPIENESVQLISNTLFNHLTNRREWFQSLKLILRTTLRSETRRASIRELL 1080
Query: 3241 SLMLACGEWEAIATMKFGEHEQVVEDFLRDAACRQSPSEKKHYFELLFAFYVARKDFRKG 3420
SLMLACGEWEAIATMKFGEHEQVVEDFLRDAACRQSPSEKKHYFELLFAFYVARKDFRKG
Sbjct: 1081 SLMLACGEWEAIATMKFGEHEQVVEDFLRDAACRQSPSEKKHYFELLFAFYVARKDFRKG 1140
Query: 3421 ACAMYEYARHIESTTCMTPELLRRKRDCLAVVLNLQSVLGMEPXXXXXXXXXXXXXNLVF 3600
ACAMYEYARHIESTTCMTPELLRRKRDCLAVVLNLQSVLGMEP NLVF
Sbjct: 1141 ACAMYEYARHIESTTCMTPELLRRKRDCLAVVLNLQSVLGMEPDDDRAIYDDATDTNLVF 1200
Query: 3601 PEPSDDEDELITESDSSGENGKLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLVALKA 3780
PEPSDDEDELITESDSSGENGKLP VDLVALKA
Sbjct: 1201 PEPSDDEDELITESDSSGENGKLPSGNKDSGSGTGNNSSPDNSNGTSSSGTGVDLVALKA 1260
Query: 3781 RQMAYALGSXXXXXXXXXXXXKGGSIPLFKRRKLLVLSEKDIRDELVLCSARVGLLSSDQ 3960
RQMAYALGS KGGSIPLFKRRKLLVLSEKDIRDELVLCSARVGLLSSDQ
Sbjct: 1261 RQMAYALGSDDMDTDDTEDDMKGGSIPLFKRRKLLVLSEKDIRDELVLCSARVGLLSSDQ 1320
Query: 3961 FKGVPPTDLNELFSLLVDNQHFDEAFDIARQFNLDSHRLFFTMTREAIMIDALRDDLNIE 4140
FKGVPPTDLNELFSLLVDNQHFDEAFDIARQFNLDSHRLFFTMTREAIMIDALRDDLNIE
Sbjct: 1321 FKGVPPTDLNELFSLLVDNQHFDEAFDIARQFNLDSHRLFFTMTREAIMIDALRDDLNIE 1380
Query: 4141 MAATHQAGWVRLNRRHCAAVATAEEHWSVVRGLVDAAQAEWPGDSRPLRGSTEAFLSFKL 4320
MAATHQAGWVRLNRRHCAAVATAEEHWSVVRGLVDAAQAEWPGDSRPLRGSTEAFLSFKL
Sbjct: 1381 MAATHQAGWVRLNRRHCAAVATAEEHWSVVRGLVDAAQAEWPGDSRPLRGSTEAFLSFKL 1440
Query: 4321 NVPVWLHSVFENNDANDYLRCLVDYESYSIALQVLSDIVEQETLQASQSNARTWLPYGII 4500
NVPVWLHSVFENNDANDYLRCLVDYESYSIALQVLSDIVEQETLQASQSNARTWLPYGII
Sbjct: 1441 NVPVWLHSVFENNDANDYLRCLVDYESYSIALQVLSDIVEQETLQASQSNARTWLPYGII 1500
Query: 4501 DELMIRSADYIRKMSLKSPEDQVVAAEVANLRKSADQKMLIYFRKVADFEQAQKMSSRFF 4680
DELMIRSADYIRKMSLKSPEDQVVAAEVANLRKSADQKMLIYFRKVADFEQAQKMSSRFF
Sbjct: 1501 DELMIRSADYIRKMSLKSPEDQVVAAEVANLRKSADQKMLIYFRKVADFEQAQKMSSRFF 1560
Query: 4681 DK 4686
DK
Sbjct: 1561 DK 1562
>gi|39580111|emb|CAE56130.1| Hypothetical protein CBG23742
[Caenorhabditis briggsae]
Length = 1530
Score = 2270 bits (5883), Expect = 0.0
Identities = 1130/1536 (73%), Positives = 1287/1536 (83%), Gaps = 14/1536 (0%)
Frame = +1
Query: 121 MELVYGSEISFTDGFAIKPARTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLW 300
M+LVYGSEISF DGF+IKP+RT VNTNAPLHSN F+ +PS GVATFPH S+Y DR+FLW
Sbjct: 1 MDLVYGSEISFGDGFSIKPSRTLSVNTNAPLHSNIFEAKPSGGVATFPHSSHYADRVFLW 60
Query: 301 RAIGQKLFIEERSLLYSITDGSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFY 480
RA+GQKL+IEERSLL+SI DGSLCIDFTRT IIPGTSITIFEEGVLCIVVPTASAIHRFY
Sbjct: 61 RAVGQKLYIEERSLLFSIADGSLCIDFTRTSIIPGTSITIFEEGVLCIVVPTASAIHRFY 120
Query: 481 ARLHSKGHDTFSILARIKEDDDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQ 660
A+L SKG DTFSILARIKE++DFRR++T H L+T GRPIRASVTHHP++NT+SYCTAEGQ
Sbjct: 121 AKLLSKGRDTFSILARIKEEEDFRRYQTCHVLTTQGRPIRASVTHHPTKNTVSYCTAEGQ 180
Query: 661 LVIVTLGSYTESSDKHEEFTMGEVXXXXXXXXXTDKRVSDACVMKNLRPTSGVTRERKIS 840
LV+V LGSYTE DKHEEFT+GEV TD+RVSDACVMKNLRP GV++ERK+S
Sbjct: 181 LVVVVLGSYTEPGDKHEEFTIGEVGLLGKLLGGTDRRVSDACVMKNLRPVGGVSKERKVS 240
Query: 841 VQSDIVFAVTRDGWVQAWNVETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPME 1020
VQ+DIVFAVTRDGWVQAWNVET+KQL STIDLN +FASDGKS N S D + E
Sbjct: 241 VQADIVFAVTRDGWVQAWNVETRKQLASTIDLNKFFASDGKSFNYQDPSDDIDGPLE-QE 299
Query: 1021 PTETVYSIRAYSFDVDILLIVGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDE 1200
P E YSI+AYSFDVD+LLIVGC++ + GKSVG RVHILK+S+DQ+QH+QMFET+MS DE
Sbjct: 300 PAELSYSIKAYSFDVDMLLIVGCEVRIGGKSVGTRVHILKMSDDQLQHMQMFETNMSADE 359
Query: 1201 RLVDLELIQNYFPSKESESLDETQDGELYNPXXXXXXXXXXXXXXXXXXXXYSMKRISFA 1380
RL D ELIQNYFP E++ LD TQ+ E YNP YSMKR+SFA
Sbjct: 360 RLEDFELIQNYFPPNEADELDTTQEFEDYNPRTAAQFSLTALFKSSSAKKNYSMKRVSFA 419
Query: 1381 IQWKKGRVFTDFDWHSVRQFTSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVV 1560
IQWK G+VFT+FDWH VRQFTS AT K EP D+ A ERPYNLSADS++ETL+DV+
Sbjct: 420 IQWKAGKVFTEFDWHPVRQFTSAATKKGEPFA--DDGNSAPERPYNLSADSNVETLVDVI 477
Query: 1561 FDTDIYPFDIVFRAVQIVSDNFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDR 1740
FDTD+Y FDIV RA+QIVS+NFRG L Q+R+N+W EL+K+VD YL SVEFNRKFQ KTDR
Sbjct: 478 FDTDVYSFDIVLRAIQIVSENFRGALTQIRHNHWAELAKVVDAYLISVEFNRKFQLKTDR 537
Query: 1741 SIRLRLNAPQESQKTALKDFWWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDR 1920
SIRLRLNAPQESQ TA+KDFWWALLRACEELDFAARG I+L+P+Q GDL+IM V+H+DR
Sbjct: 538 SIRLRLNAPQESQTTAVKDFWWALLRACEELDFAARGTIALSPMQLAGDLKIMTVIHKDR 597
Query: 1921 MTFLGDNNTEFLEIISSENIPKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRER 2100
T LGDNN +FL IIS+ENIPK G+VEEKFRK+PNK F+DLI+EA+KFADRRV+LMN+ER
Sbjct: 598 FTILGDNNIDFLNIISTENIPKPGHVEEKFRKIPNKLFVDLIDEAAKFADRRVYLMNKER 657
Query: 2101 ARLTNAKNGVAVVEDDNVENAYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPF 2280
ARLTNAK+GV VV+DD +ENAYDYDSDGRFI IK+ALE IV L AFVEASTFDN KPF
Sbjct: 658 ARLTNAKHGVTVVDDDILENAYDYDSDGRFIQIKSALENSIVMLTTAFVEASTFDNGKPF 717
Query: 2281 EDPHPQIFGGSFTQSVVSANIRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEAL 2460
EDP +FGGSF+QS+VSANIR SVESRVHFALTLQ LLNAITE+KSRAG PSFGDVEAL
Sbjct: 718 EDPCAHVFGGSFSQSLVSANIRKSVESRVHFALTLQALLNAITEQKSRAGVPSFGDVEAL 777
Query: 2461 SCELREIIRVYRELNEQLDIKIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIR 2640
SCELREIIRVYRELNEQLD+KI++NGAKMSIGTWLTSD +GL+MMK+EGGYGP+GYDEIR
Sbjct: 778 SCELREIIRVYRELNEQLDLKILKNGAKMSIGTWLTSDNDGLAMMKREGGYGPNGYDEIR 837
Query: 2641 ENDFNWFVGVTTEAAIRALLSSSEILVLPRRLVLQKQYKVLLTILNSYISETRALKPVIT 2820
E+DFNWFVGVTTE+A+RALLSSSEILVLPRRLV+ KQYKVLLTILNSYISETRALKPVIT
Sbjct: 838 ESDFNWFVGVTTESAVRALLSSSEILVLPRRLVILKQYKVLLTILNSYISETRALKPVIT 897
Query: 2821 FYRGIAYSGTDHPVKALNSFQSCLDAFSEGNNALRKAVYFLLPKRFDVAQGKDPVEELTA 3000
FYRGIAYSGTDHPVKALN+FQSCLDAF+EGN LRKAVY+LLPKRF V +GKDP+E+LTA
Sbjct: 898 FYRGIAYSGTDHPVKALNAFQSCLDAFTEGNVPLRKAVYYLLPKRFAVTKGKDPLEQLTA 957
Query: 3001 SEYFLTVVRFLQEHNHAEEVCSVAVKAIENLPIENESVQLISNTLFNHLTNRREWFQSLK 3180
SE+FLTVVRFLQEH HAEEVCSV+++AIE+LPIENESVQ+ISNTLFNHLTNRREWFQ+LK
Sbjct: 958 SEFFLTVVRFLQEHGHAEEVCSVSMRAIESLPIENESVQVISNTLFNHLTNRREWFQALK 1017
Query: 3181 LILRTTLRSETRRASIRELLSLMLACGEWEAIATMKFGEHEQVVEDFLRDAACRQSPSEK 3360
LIL+TTLR+ETRRASI ELL+LMLA GEWE IATMKFG HEQ+VEDFLRDAACRQSP++K
Sbjct: 1018 LILKTTLRAETRRASICELLTLMLAVGEWETIATMKFGVHEQIVEDFLRDAACRQSPADK 1077
Query: 3361 KHYFELLFAFYVARKDFRKGACAMYEYARHIESTTCMTPELLRRKRDCLAVVLNLQSVLG 3540
KHYFELL+AFY+ARKDFRKGACAMYEYARHIE+ CMTPELLRR+RDCLA VLNLQSVL
Sbjct: 1078 KHYFELLYAFYMARKDFRKGACAMYEYARHIETAACMTPELLRRRRDCLAAVLNLQSVLS 1137
Query: 3541 MEPXXXXXXXXXXXXXNLVFPEPSDDEDELITESDSSGEN--------------GKLPXX 3678
+EP NLVFP PSDDE E T+S N G
Sbjct: 1138 IEPEDSGAIYDDYTDTNLVFPIPSDDETETETDSSEDASNQPDETVSSHKNPRSGATTTG 1197
Query: 3679 XXXXXXXXXXXXXXXXXXXXXXXXXXVDLVALKARQMAYALGSXXXXXXXXXXXXKGGSI 3858
D +++R++ YA+GS + +
Sbjct: 1198 TSSSSGSSPENYQRRASQGTSCSGRTSDSAMIRSRKLNYAMGSDTDMDTDGEQMPR---L 1254
Query: 3859 PLFKRRKLLVLSEKDIRDELVLCSARVGLLSSDQFKGVPPTDLNELFSLLVDNQHFDEAF 4038
PL KRRKLLVLSEKDIRDE VLCSARVGLL+S +FKGVPPTD+ +LF+LLVD HFD+AF
Sbjct: 1255 PLNKRRKLLVLSEKDIRDEWVLCSARVGLLASGEFKGVPPTDVEDLFALLVDTLHFDDAF 1314
Query: 4039 DIARQFNLDSHRLFFTMTREAIMIDALRDDLNIEMAATHQAGWVRLNRRHCAAVATAEEH 4218
DIARQF+LD+ +LFFT+TREAI+IDALRDDLNIEMA+THQAGWVRLNRRHC +VATAE+H
Sbjct: 1315 DIARQFHLDARKLFFTVTREAILIDALRDDLNIEMASTHQAGWVRLNRRHCLSVATAEDH 1374
Query: 4219 WSVVRGLVDAAQAEWPGDSRPLRGSTEAFLSFKLNVPVWLHSVFENNDANDYLRCLVDYE 4398
W+VVRGLVDAA AEWPGDSRPLRGS EAFLS+K+ VP WLH+V+E DANDYLRCLVDYE
Sbjct: 1375 WAVVRGLVDAALAEWPGDSRPLRGSAEAFLSYKVGVPYWLHNVYEKKDANDYLRCLVDYE 1434
Query: 4399 SYSIALQVLSDIVEQETLQASQSNARTWLPYGIIDELMIRSADYIRKMSLKSPEDQVVAA 4578
SY+IALQVL DIVE ETLQ SQ NARTWLPYG+IDELMI SADY+RKMS+K+PEDQV+AA
Sbjct: 1435 SYAIALQVLEDIVEHETLQVSQPNARTWLPYGVIDELMISSADYVRKMSMKTPEDQVLAA 1494
Query: 4579 EVANLRKSADQKMLIYFRKVADFEQAQKMSSRFFDK 4686
+VANLR+ AD+K++ YFRKV+DFEQAQKMSSRFFDK
Sbjct: 1495 DVANLRQKADKKLMTYFRKVSDFEQAQKMSSRFFDK 1530
>gi|25150098|ref|NP_740845.1| putative cytoplasmic protein, Nuclear
Pore complex Protein NPP-6 (npp-6) [Caenorhabditis
elegans]
gi|18652599|gb|AAL77180.1| Nuclear pore complex protein protein 6,
isoform b [Caenorhabditis elegans]
Length = 889
Score = 1695 bits (4390), Expect = 0.0
Identities = 851/880 (96%), Positives = 851/880 (96%)
Frame = +1
Query: 1 MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA 180
MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA
Sbjct: 1 MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA 60
Query: 181 RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD 360
RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD
Sbjct: 61 RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD 120
Query: 361 GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED 540
GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED
Sbjct: 121 GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED 180
Query: 541 DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT 720
DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT
Sbjct: 181 DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT 240
Query: 721 MGEVXXXXXXXXXTDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV 900
MGEV TDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV
Sbjct: 241 MGEVGLLGKLLGGTDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV 300
Query: 901 ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI 1080
ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI
Sbjct: 301 ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI 360
Query: 1081 VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL 1260
VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL
Sbjct: 361 VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL 420
Query: 1261 DETQDGELYNPXXXXXXXXXXXXXXXXXXXXYSMKRISFAIQWKKGRVFTDFDWHSVRQF 1440
DETQDGELYNP YSMKRISFAIQWKKGRVFTDFDWHSVRQF
Sbjct: 421 DETQDGELYNPLTAALFSLSALFKSSSAKKTYSMKRISFAIQWKKGRVFTDFDWHSVRQF 480
Query: 1441 TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD 1620
TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD
Sbjct: 481 TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD 540
Query: 1621 NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF 1800
NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF
Sbjct: 541 NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF 600
Query: 1801 WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI 1980
WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI
Sbjct: 601 WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI 660
Query: 1981 PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN 2160
PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN
Sbjct: 661 PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN 720
Query: 2161 AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN 2340
AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN
Sbjct: 721 AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN 780
Query: 2341 IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI 2520
IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI
Sbjct: 781 IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI 840
Query: 2521 KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIR 2640
KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIR
Sbjct: 841 KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIR 880