Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= F56A3_6
         (2352 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17507663|ref|NP_491543.1| putative protein (1F759) [Caenorhab...  1454   0.0
gi|7504362|pir||T29148 hypothetical protein F56A3.1 - Caenorhabd...  1190   0.0
gi|39595862|emb|CAE67365.1| Hypothetical protein CBG12832 [Caeno...  1001   0.0
gi|24648759|ref|NP_650971.1| CG7922-PA [Drosophila melanogaster]...    40   0.19
gi|26554034|ref|NP_757968.1| adenylosuccinate lyase [Mycoplasma ...    40   0.19
gi|48106961|ref|XP_396173.1| similar to CG7922-PA [Apis mellifera]     39   0.74
gi|31204041|ref|XP_310969.1| ENSANGP00000019476 [Anopheles gambi...    38   0.96
gi|8778360|gb|AAF79368.1| F15O4.40 [Arabidopsis thaliana]              38   1.3
gi|46308165|ref|ZP_00210360.1| COG0466: ATP-dependent Lon protea...    37   1.6
gi|47230040|emb|CAG10454.1| unnamed protein product [Tetraodon n...    37   2.8
gi|15219634|ref|NP_174785.1| DEAD/DEAH box helicase, putative [A...    37   2.8
gi|23273574|gb|AAH36056.1| KIAA1596 protein [Homo sapiens]             35   6.2
gi|21752288|dbj|BAC04159.1| unnamed protein product [Homo sapiens]     35   6.2
gi|28899456|ref|NP_799061.1| RNA polymerase-associated protein H...    35   6.2
gi|37545933|ref|XP_048128.5| KIAA1596 [Homo sapiens]                   35   6.2
gi|26341032|dbj|BAC34178.1| unnamed protein product [Mus musculu...    35   6.2
gi|34865292|ref|XP_234239.2| similar to RIKEN cDNA C730036B14 ge...    35   6.2
gi|47566164|ref|ZP_00237192.1| hypothetical protein protein [Bac...    35   6.2
gi|38050374|ref|XP_126996.3| RIKEN cDNA C730036B14 gene [Mus mus...    35   6.2
gi|26333531|dbj|BAC30483.1| unnamed protein product [Mus musculus]     35   6.2
gi|26352047|dbj|BAC39660.1| unnamed protein product [Mus musculus]     35   6.2
gi|11281977|pir||T43934 DNA-directed DNA polymerase (EC 2.7.7.7)...    35   8.1
gi|20141412|sp|P81409|DP2L_PYRFU DNA polymerase II large subunit...    35   8.1
gi|14520338|ref|NP_125813.1| dna polymerase ii large subunit [Py...    35   8.1
gi|14590066|ref|NP_142130.1| hypothetical protein PH0121 [Pyroco...    35   8.1
gi|33359447|ref|NP_577748.2| DNA polymerase II subunit 2 [Pyroco...    35   8.1
gi|13431451|sp|O57861|DP2L_PYRHO DNA polymerase II large subunit...    35   8.1


>gi|17507663|ref|NP_491543.1| putative protein (1F759) [Caenorhabditis
            elegans]
 gi|14916319|gb|AAB37805.2| Hypothetical protein F56A3.1
            [Caenorhabditis elegans]
          Length = 783

 Score = 1454 bits (3763), Expect = 0.0
 Identities = 726/783 (92%), Positives = 726/783 (92%)
 Frame = +1

Query: 1    MPPKKTQKSGLLQFFAKQQQEKYQNSSKNEETTEHDDSCQILFEKQVAGPSKVSKPIGFP 180
            MPPKKTQKSGLLQFFAKQQQEKYQNSSKNEETTEHDDSCQILFEKQVAGPSKVSKPIGFP
Sbjct: 1    MPPKKTQKSGLLQFFAKQQQEKYQNSSKNEETTEHDDSCQILFEKQVAGPSKVSKPIGFP 60

Query: 181  TTPKNTTKWAETLQKSSEKAGRDWLNPFPIRVSSAKKEIEKNSKTELLAKGFDDIHGNGI 360
            TTPKNTTKWAETLQKSSEKAGRDWLNPFPIRVSSAKKEIEKNSKTELLAKGFDDIHGNGI
Sbjct: 61   TTPKNTTKWAETLQKSSEKAGRDWLNPFPIRVSSAKKEIEKNSKTELLAKGFDDIHGNGI 120

Query: 361  FYPINEPIRNFEXXXXXXXXXXXXXVALPSSSPSTPGRICAMTVFNFLKWFPRCRVXXXX 540
            FYPINEPIRNFE             VALPSSSPSTPGRICAMTVFNFLKWFPRCRV
Sbjct: 121  FYPINEPIRNFELNLLKCLSSSNCCVALPSSSPSTPGRICAMTVFNFLKWFPRCRVLLVS 180

Query: 541  XXXXXXXXXXXXGLESQTTKLTTVTQFKNLKTEAGKILVCTTPQCALKVVESTGGREFLE 720
                        GLESQTTKLTTVTQFKNLKTEAGKILVCTTPQCALKVVESTGGREFLE
Sbjct: 181  SSDSWISSLRQLGLESQTTKLTTVTQFKNLKTEAGKILVCTTPQCALKVVESTGGREFLE 240

Query: 721  EIRLVLMELKPNECCSKYKPILNALTVKETFFRCSVLXXXXXXXXXXXXXITKRQQMITN 900
            EIRLVLMELKPNECCSKYKPILNALTVKETFFRCSVL             ITKRQQMITN
Sbjct: 241  EIRLVLMELKPNECCSKYKPILNALTVKETFFRCSVLTTSTSNASRRTASITKRQQMITN 300

Query: 901  LQLSDWIEQTEADFAFRSANIPAGVEVKTWKSEDNSAKHAEITGKFEKYCEKTIDDLARQ 1080
            LQLSDWIEQTEADFAFRSANIPAGVEVKTWKSEDNSAKHAEITGKFEKYCEKTIDDLARQ
Sbjct: 301  LQLSDWIEQTEADFAFRSANIPAGVEVKTWKSEDNSAKHAEITGKFEKYCEKTIDDLARQ 360

Query: 1081 CIVSSKSVKKLIWTCWKTLKQQXXXXXXXXXXXXXXXFLTCTYKLLIIDGVVAARNFVKK 1260
            CIVSSKSVKKLIWTCWKTLKQQ               FLTCTYKLLIIDGVVAARNFVKK
Sbjct: 361  CIVSSKSVKKLIWTCWKTLKQQSKLPEIEKKKLEISEFLTCTYKLLIIDGVVAARNFVKK 420

Query: 1261 HSEIPHIKEHAEKILEPTIFGGFSEFPAKFQQLSDSIEAFLKMDNHVLGVILCRDSDQAI 1440
            HSEIPHIKEHAEKILEPTIFGGFSEFPAKFQQLSDSIEAFLKMDNHVLGVILCRDSDQAI
Sbjct: 421  HSEIPHIKEHAEKILEPTIFGGFSEFPAKFQQLSDSIEAFLKMDNHVLGVILCRDSDQAI 480

Query: 1441 EIQNYLELQLTTRCTCVRIIEEGTHPGRNLWNIQRISTVFIDRKSPKIVILPVKIRDFIG 1620
            EIQNYLELQLTTRCTCVRIIEEGTHPGRNLWNIQRISTVFIDRKSPKIVILPVKIRDFIG
Sbjct: 481  EIQNYLELQLTTRCTCVRIIEEGTHPGRNLWNIQRISTVFIDRKSPKIVILPVKIRDFIG 540

Query: 1621 FSDGLPLSELTFIASISRDSLFNFRRFGGAHLLIINDPLEKLRNEDGRLLVDDGKFVQNN 1800
            FSDGLPLSELTFIASISRDSLFNFRRFGGAHLLIINDPLEKLRNEDGRLLVDDGKFVQNN
Sbjct: 541  FSDGLPLSELTFIASISRDSLFNFRRFGGAHLLIINDPLEKLRNEDGRLLVDDGKFVQNN 600

Query: 1801 SKNAPKMGAVERYDFKFEPSRLRIDATHLPIQFFYPRDVGVTFDETAGISQLGKTHIEMT 1980
            SKNAPKMGAVERYDFKFEPSRLRIDATHLPIQFFYPRDVGVTFDETAGISQLGKTHIEMT
Sbjct: 601  SKNAPKMGAVERYDFKFEPSRLRIDATHLPIQFFYPRDVGVTFDETAGISQLGKTHIEMT 660

Query: 1981 SKEHTELFKRLQNPDFSRFQRRKRVFWVLEDLEHPNENKSIPIEEMDETQLCWNQDIQYL 2160
            SKEHTELFKRLQNPDFSRFQRRKRVFWVLEDLEHPNENKSIPIEEMDETQLCWNQDIQYL
Sbjct: 661  SKEHTELFKRLQNPDFSRFQRRKRVFWVLEDLEHPNENKSIPIEEMDETQLCWNQDIQYL 720

Query: 2161 GEIKSSKLSERLTRYMKDEPVEWIINEKRRFEYINEITSTDRLVHLDRLLRNLDAHFQVL 2340
            GEIKSSKLSERLTRYMKDEPVEWIINEKRRFEYINEITSTDRLVHLDRLLRNLDAHFQVL
Sbjct: 721  GEIKSSKLSERLTRYMKDEPVEWIINEKRRFEYINEITSTDRLVHLDRLLRNLDAHFQVL 780

Query: 2341 SSC 2349
            SSC
Sbjct: 781  SSC 783


>gi|7504362|pir||T29148 hypothetical protein F56A3.1 - Caenorhabditis
            elegans
          Length = 687

 Score = 1190 bits (3079), Expect(2) = 0.0
 Identities = 597/654 (91%), Positives = 597/654 (91%)
 Frame = +1

Query: 1    MPPKKTQKSGLLQFFAKQQQEKYQNSSKNEETTEHDDSCQILFEKQVAGPSKVSKPIGFP 180
            MPPKKTQKSGLLQFFAKQQQEKYQNSSKNEETTEHDDSCQILFEKQVAGPSKVSKPIGFP
Sbjct: 1    MPPKKTQKSGLLQFFAKQQQEKYQNSSKNEETTEHDDSCQILFEKQVAGPSKVSKPIGFP 60

Query: 181  TTPKNTTKWAETLQKSSEKAGRDWLNPFPIRVSSAKKEIEKNSKTELLAKGFDDIHGNGI 360
            TTPKNTTKWAETLQKSSEKAGRDWLNPFPIRVSSAKKEIEKNSKTELLAKGFDDIHGNGI
Sbjct: 61   TTPKNTTKWAETLQKSSEKAGRDWLNPFPIRVSSAKKEIEKNSKTELLAKGFDDIHGNGI 120

Query: 361  FYPINEPIRNFEXXXXXXXXXXXXXVALPSSSPSTPGRICAMTVFNFLKWFPRCRVXXXX 540
            FYPINEPIRNFE             VALPSSSPSTPGRICAMTVFNFLKWFPRCRV
Sbjct: 121  FYPINEPIRNFELNLLKCLSSSNCCVALPSSSPSTPGRICAMTVFNFLKWFPRCRVLLVS 180

Query: 541  XXXXXXXXXXXXGLESQTTKLTTVTQFKNLKTEAGKILVCTTPQCALKVVESTGGREFLE 720
                        GLESQTTKLTTVTQFKNLKTEAGKILVCTTPQCALKVVESTGGREFLE
Sbjct: 181  SSDSWISSLRQLGLESQTTKLTTVTQFKNLKTEAGKILVCTTPQCALKVVESTGGREFLE 240

Query: 721  EIRLVLMELKPNECCSKYKPILNALTVKETFFRCSVLXXXXXXXXXXXXXITKRQQMITN 900
            EIRLVLMELKPNECCSKYKPILNALTVKETFFRCSVL             ITKRQQMITN
Sbjct: 241  EIRLVLMELKPNECCSKYKPILNALTVKETFFRCSVLTTSTSNASRRTASITKRQQMITN 300

Query: 901  LQLSDWIEQTEADFAFRSANIPAGVEVKTWKSEDNSAKHAEITGKFEKYCEKTIDDLARQ 1080
            LQLSDWIEQTEADFAFRSANIPAGVEVKTWKSEDNSAKHAEITGKFEKYCEKTIDDLARQ
Sbjct: 301  LQLSDWIEQTEADFAFRSANIPAGVEVKTWKSEDNSAKHAEITGKFEKYCEKTIDDLARQ 360

Query: 1081 CIVSSKSVKKLIWTCWKTLKQQXXXXXXXXXXXXXXXFLTCTYKLLIIDGVVAARNFVKK 1260
            CIVSSKSVKKLIWTCWKTLKQQ               FLTCTYKLLIIDGVVAARNFVKK
Sbjct: 361  CIVSSKSVKKLIWTCWKTLKQQSKLPEIEKKKLEISEFLTCTYKLLIIDGVVAARNFVKK 420

Query: 1261 HSEIPHIKEHAEKILEPTIFGGFSEFPAKFQQLSDSIEAFLKMDNHVLGVILCRDSDQAI 1440
            HSEIPHIKEHAEKILEPTIFGGFSEFPAKFQQLSDSIEAFLKMDNHVLGVILCRDSDQAI
Sbjct: 421  HSEIPHIKEHAEKILEPTIFGGFSEFPAKFQQLSDSIEAFLKMDNHVLGVILCRDSDQAI 480

Query: 1441 EIQNYLELQLTTRCTCVRIIEEGTHPGRNLWNIQRISTVFIDRKSPKIVILPVKIRDFIG 1620
            EIQNYLELQLTTRCTCVRIIEEGTHPGRNLWNIQRISTVFIDRKSPKIVILPVKIRDFIG
Sbjct: 481  EIQNYLELQLTTRCTCVRIIEEGTHPGRNLWNIQRISTVFIDRKSPKIVILPVKIRDFIG 540

Query: 1621 FSDGLPLSELTFIASISRDSLFNFRRFGGAHLLIINDPLEKLRNEDGRLLVDDGKFVQNN 1800
            FSDGLPLSELTFIASISRDSLFNFRRFGGAHLLIINDPLEKLRNEDGRLLVDDGKFVQNN
Sbjct: 541  FSDGLPLSELTFIASISRDSLFNFRRFGGAHLLIINDPLEKLRNEDGRLLVDDGKFVQNN 600

Query: 1801 SKNAPKMGAVERYDFKFEPSRLRIDATHLPIQFFYPRDVGVTFDETAGISQLGK 1962
            SKNAPKMGAVERYDFKFEPSRLRIDATHLPIQFFYPRDVGVTFDETAGISQLGK
Sbjct: 601  SKNAPKMGAVERYDFKFEPSRLRIDATHLPIQFFYPRDVGVTFDETAGISQLGK 654



 Score = 73.9 bits (180), Expect(2) = 0.0
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +2

Query: 2069 KIWSTQMKINQFQLKKWMKLNFAGIRIFNIWVK 2167
            KIWSTQMKINQFQLKKWMKLNFAGIRIFNIWVK
Sbjct: 655  KIWSTQMKINQFQLKKWMKLNFAGIRIFNIWVK 687


>gi|39595862|emb|CAE67365.1| Hypothetical protein CBG12832
            [Caenorhabditis briggsae]
          Length = 746

 Score = 1001 bits (2589), Expect = 0.0
 Identities = 501/782 (64%), Positives = 598/782 (76%), Gaps = 1/782 (0%)
 Frame = +1

Query: 1    MPPKKTQKSGLLQFFAKQQQEKYQNSSKNEETTEHDDSCQILFEKQVAGPSKVSKPIGFP 180
            MPPKKT K GLLQFFAKQQQEKYQN++++ +    D+SCQILFEK V   S V+
Sbjct: 1    MPPKKTPKPGLLQFFAKQQQEKYQNNARSSDNQLDDESCQILFEKPVPSTSSVN------ 54

Query: 181  TTPKNTTKWAETLQKSSEKA-GRDWLNPFPIRVSSAKKEIEKNSKTELLAKGFDDIHGNG 357
            TTPK+ TKW+ TLQKS+EK  GRDW +PFPI+V SAKK     SK++LLA GFD IHGNG
Sbjct: 55   TTPKSATKWSTTLQKSAEKRMGRDWQHPFPIKVGSAKKANGNASKSDLLANGFDGIHGNG 114

Query: 358  IFYPINEPIRNFEXXXXXXXXXXXXXVALPSSSPSTPGRICAMTVFNFLKWFPRCRVXXX 537
            IFYPI+EPIRNFE             +ALP+S+ S+ GRICAMTVFNFLKWFPRCR+
Sbjct: 115  IFYPIDEPIRNFELNLLKCTATSNCCIALPASASSSSGRICAMTVFNFLKWFPRCRILLV 174

Query: 538  XXXXXXXXXXXXXGLESQTTKLTTVTQFKNLKTEAGKILVCTTPQCALKVVESTGGREFL 717
                         GLESQTTK TT+TQFKN+K E+G+I++C TPQCALK++ES+   EFL
Sbjct: 175  TASDSWLTSLRQLGLESQTTKFTTMTQFKNMKKESGRIMMCATPQCALKILESSESLEFL 234

Query: 718  EEIRLVLMELKPNECCSKYKPILNALTVKETFFRCSVLXXXXXXXXXXXXXITKRQQMIT 897
            +EIRLV+MELKP+ECCSKYKPI+NALTVK+ FFRC VL             ITKRQ MIT
Sbjct: 235  DEIRLVIMELKPSECCSKYKPIINALTVKDVFFRCVVLTTATSNTSRRTASITKRQIMIT 294

Query: 898  NLQLSDWIEQTEADFAFRSANIPAGVEVKTWKSEDNSAKHAEITGKFEKYCEKTIDDLAR 1077
            NL LSDWIEQ+E DF+FR++NIPAGVEVKTWK E+NS K  EI  KFE +CEK ID+LAR
Sbjct: 295  NLHLSDWIEQSETDFSFRNSNIPAGVEVKTWKIEENSMKLQEIIEKFESFCEKPIDELAR 354

Query: 1078 QCIVSSKSVKKLIWTCWKTLKQQXXXXXXXXXXXXXXXFLTCTYKLLIIDGVVAARNFVK 1257
              I+ SKS+KK+I+TCWK++KQ                FL   YK L+IDGVVA+RN+VK
Sbjct: 355  LSILPSKSMKKMIFTCWKSMKQ---SNTQEIDKLETAEFLITAYKTLLIDGVVASRNYVK 411

Query: 1258 KHSEIPHIKEHAEKILEPTIFGGFSEFPAKFQQLSDSIEAFLKMDNHVLGVILCRDSDQA 1437
            K +E   ++E A+KIL+P+I GGFSEFP+KFQ LS+SIEAFLKM+NHVLGVILCRDSDQ
Sbjct: 412  KEAENTKLQELAKKILDPSILGGFSEFPSKFQHLSNSIEAFLKMNNHVLGVILCRDSDQG 471

Query: 1438 IEIQNYLELQLTTRCTCVRIIEEGTHPGRNLWNIQRISTVFIDRKSPKIVILPVKIRDFI 1617
            IEIQNYL+LQL TRCT +RIIEEGTHP RNLWNIQRISTVF+DRK+PKIVILPVK+RDFI
Sbjct: 472  IEIQNYLDLQLATRCTVLRIIEEGTHPARNLWNIQRISTVFLDRKAPKIVILPVKLRDFI 531

Query: 1618 GFSDGLPLSELTFIASISRDSLFNFRRFGGAHLLIINDPLEKLRNEDGRLLVDDGKFVQN 1797
            G SDGLPLSE+TFIAS+SRD  FNFRRFGGA+LL+ NDPLE L
Sbjct: 532  GHSDGLPLSEVTFIASVSRDCTFNFRRFGGAYLLLANDPLEML----------------- 574

Query: 1798 NSKNAPKMGAVERYDFKFEPSRLRIDATHLPIQFFYPRDVGVTFDETAGISQLGKTHIEM 1977
                           FKFEPSRLRID  HLP+ FFYPR++G + DETAG+S+LGKTHIEM
Sbjct: 575  -------------IRFKFEPSRLRIDVAHLPMHFFYPREMGDSLDETAGMSRLGKTHIEM 621

Query: 1978 TSKEHTELFKRLQNPDFSRFQRRKRVFWVLEDLEHPNENKSIPIEEMDETQLCWNQDIQY 2157
            + KEH EL+KRLQNPDFS FQRRKR FW+L+DLE+PNE +SI ++EMD+ Q+ WNQ++QY
Sbjct: 622  SLKEHAELYKRLQNPDFSSFQRRKRPFWILKDLENPNEKRSIEVDEMDDDQVNWNQNLQY 681

Query: 2158 LGEIKSSKLSERLTRYMKDEPVEWIINEKRRFEYINEITSTDRLVHLDRLLRNLDAHFQV 2337
            LG+I+ SKLSER T+Y+K+  VEW I+EKRRFEY+N+ITS DRL+HLDRLLRNLDA+F+V
Sbjct: 682  LGDIRWSKLSERFTKYLKNGHVEWAISEKRRFEYVNDITSPDRLLHLDRLLRNLDANFEV 741

Query: 2338 LS 2343
            LS
Sbjct: 742  LS 743




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