Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F56F3_5
(774 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17553700|ref|NP_497910.1| ribosomal Protein, Small subunit (2... 452 e-126
gi|39591620|emb|CAE71197.1| Hypothetical protein CBG18056 [Caeno... 449 e-125
gi|40642988|emb|CAD91420.1| ribosomal protein S3a [Crassostrea g... 303 3e-81
gi|1350980|sp|P49395|RS3A_APLCA 40S RIBOSOMAL PROTEIN S3A (LYSIN... 302 6e-81
gi|45219787|gb|AAH66926.1| Ribosomal protein S3a [Homo sapiens] 300 2e-80
gi|4506723|ref|NP_000997.1| ribosomal protein S3a; 40S ribosomal... 300 2e-80
gi|47117870|sp|P61246|RS3A_FELCA 40S ribosomal protein S3a >gnl|... 300 2e-80
gi|14755682|ref|XP_039702.1| similar to ribosomal protein S3a; 4... 300 3e-80
gi|3914915|sp|O73813|RS3A_ORYLA 40S RIBOSOMAL PROTEIN S3A (V-FOS... 300 3e-80
gi|28958133|gb|AAH47260.1| Rps3a-prov protein [Xenopus laevis] 299 4e-80
gi|20872608|ref|XP_124083.1| ribosomal protein S3a [Mus musculus... 299 4e-80
gi|8394221|ref|NP_058849.1| ribosomal protein S3a [Rattus norveg... 299 4e-80
gi|306553|gb|AAA35682.1| ribosmal protein small subunit 299 5e-80
gi|12958634|gb|AAK09383.1| ribosomal protein S3a [Ophiophagus ha... 299 5e-80
gi|15294017|gb|AAK95185.1| 40S ribosomal protein S3a [Ictalurus ... 298 7e-80
gi|41152457|ref|NP_956353.1| Unknown (protein for MGC:73195); wu... 298 9e-80
gi|7441114|pir||JC5250 ribosomal protein S3a, cytosolic [validat... 298 1e-79
gi|31980669|ref|NP_058655.2| ribosomal protein S3a [Mus musculus... 298 1e-79
gi|49659860|gb|AAT68229.1| GekBS027P [Gekko japonicus] 297 1e-79
gi|47209366|emb|CAF90706.1| unnamed protein product [Tetraodon n... 295 9e-79
gi|3914914|sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a... 293 4e-78
gi|50402817|gb|AAT76631.1| ribosomal protein S3a [Felis catus] 290 3e-77
gi|38089068|ref|XP_193371.2| similar to ribosomal protein S3a [M... 286 3e-76
gi|50344458|emb|CAH04315.1| S3Ae ribosomal protein [Biphyllus lu... 284 1e-75
gi|38089506|ref|XP_194428.2| similar to ribosomal protein S3a [M... 280 2e-74
gi|31208617|ref|XP_313275.1| ENSANGP00000010983 [Anopheles gambi... 280 2e-74
gi|38047857|gb|AAR09831.1| similar to Drosophila melanogaster Rp... 275 1e-72
gi|3915856|sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 pr... 273 2e-72
gi|16566722|gb|AAL26579.1| ribosomal protein S3A [Spodoptera fru... 273 3e-72
gi|17864162|ref|NP_524618.1| CG2168-PA [Drosophila melanogaster]... 273 3e-72
gi|50746323|ref|XP_420443.1| PREDICTED: similar to 40S ribosomal... 272 5e-72
gi|1710761|sp|P52813|RS3A_ANOGA 40S RIBOSOMAL PROTEIN S3A (C3 PR... 272 5e-72
gi|1350986|sp|P49397|RS3A_ORYSA 40S RIBOSOMAL PROTEIN S3A (CYC07... 267 2e-70
gi|15236171|ref|NP_195193.1| 40S ribosomal protein S3A (RPS3aB) ... 266 5e-70
gi|14318167|gb|AAK59927.1| ribosomal protein S3a [Heliothis vire... 265 6e-70
gi|47847734|dbj|BAD21513.1| putative ribosomal protein S3a, cyto... 259 6e-68
gi|1350984|sp|P49198|RS3A_HELAN 40S RIBOSOMAL PROTEIN S3A >gnl|B... 258 8e-68
gi|1350981|sp|P49396|RS3A_BRARA 40S RIBOSOMAL PROTEIN S3A (S PHA... 258 1e-67
gi|15229364|ref|NP_187135.1| 40S ribosomal protein S3A (RPS3aA) ... 257 2e-67
gi|24817254|emb|CAD56219.1| ribosomal protein S3a [Cicer arietinum] 256 3e-67
gi|6714564|dbj|BAA89498.1| cyc07 [Daucus carota] 254 1e-66
gi|44885669|dbj|BAD11816.1| putative S-phase specific ribosomal ... 253 4e-66
gi|7441116|pir||T02874 ribosomal protein S3a, cytosolic - rice >... 251 1e-65
gi|1350983|sp|P33444|RS3A_CATRO 40S ribosomal protein S3a (CYC07... 249 5e-65
gi|82065|pir||JQ0939 ribosomal protein S3a - Madagascar periwink... 246 3e-64
gi|1856971|dbj|BAA05057.1| This gene is specifically expressed a... 246 4e-64
gi|1752661|emb|CAA71201.1| ribosomal protein S3a [Drosophila mel... 246 5e-64
gi|50260204|gb|EAL22865.1| hypothetical protein CNBB0860 [Crypto... 244 2e-63
gi|38048393|gb|AAR10099.1| similar to Drosophila melanogaster Rp... 243 3e-63
gi|41204887|ref|XP_016713.4| similar to ribosomal protein S3a; 4... 243 3e-63
gi|49077640|ref|XP_402656.1| hypothetical protein UM05041.1 [Ust... 241 1e-62
gi|28950332|emb|CAD70957.1| probable ribosomal protein 10, cytos... 240 3e-62
gi|46443138|gb|EAL02422.1| hypothetical protein CaO19.10520 [Can... 240 3e-62
gi|46126205|ref|XP_387656.1| conserved hypothetical protein [Gib... 239 5e-62
gi|5441551|emb|CAB46830.1| Ribosomal protein [Canis familiaris] 239 6e-62
gi|38109381|gb|EAA55262.1| hypothetical protein MG06919.4 [Magna... 238 1e-61
gi|730655|sp|P40910|RS3A_CANAL 40S RIBOSOMAL PROTEIN S3AE (S1) >... 237 2e-61
gi|49130990|ref|XP_413007.1| conserved hypothetical protein [Asp... 235 9e-61
gi|32414823|ref|XP_327891.1| hypothetical protein [Neurospora cr... 234 1e-60
gi|19113740|ref|NP_592828.1| 40s ribosomal protein s3ae (S1) [Sc... 234 1e-60
gi|12314263|emb|CAC17682.1| bA486O22.3 (similar to RPS3A (riboso... 234 2e-60
gi|32401367|gb|AAP80855.1| cyc07 [Triticum aestivum] 232 6e-60
gi|50424385|ref|XP_460779.1| unnamed protein product [Debaryomyc... 231 1e-59
gi|50420679|ref|XP_458876.1| unnamed protein product [Debaryomyc... 231 1e-59
gi|19114028|ref|NP_593116.1| 40s ribosomal protein S3a.2/S1B [Sc... 231 2e-59
gi|50555269|ref|XP_505043.1| hypothetical protein [Yarrowia lipo... 228 8e-59
gi|50303635|ref|XP_451759.1| unnamed protein product [Kluyveromy... 226 3e-58
gi|41147022|ref|XP_059669.4| similar to ribosomal protein S3a; 4... 226 4e-58
gi|46226833|gb|EAK87799.1| putative 40S ribosomal protein S3A [C... 225 7e-58
gi|50293939|ref|XP_449381.1| unnamed protein product [Candida gl... 225 9e-58
gi|6323474|ref|NP_013546.1| Ribosomal protein 10 (rp10) of the s... 224 2e-57
gi|45190736|ref|NP_984990.1| AER131Cp [Eremothecium gossypii] >g... 223 5e-57
gi|37654222|gb|AAQ96216.1| LRRGT00003 [Rattus norvegicus] 221 2e-56
gi|34851366|ref|XP_341653.1| similar to mKIAA0849 protein [Rattu... 221 2e-56
gi|6323577|ref|NP_013648.1| Ribosomal protein 10 (rp10) of the s... 220 2e-56
gi|28189785|dbj|BAC56507.1| similar to ribosomal protein S3a [Bo... 210 3e-53
gi|38076420|ref|XP_354832.1| similar to 40S RIBOSOMAL PROTEIN S3... 210 3e-53
gi|38085883|ref|XP_355862.1| similar to 40S RIBOSOMAL PROTEIN S3... 210 3e-53
gi|17945018|gb|AAL48571.1| RE04220p [Drosophila melanogaster] 208 1e-52
gi|16805310|ref|NP_473338.1| 40S ribosomal protein S3A, putative... 208 1e-52
gi|38075067|ref|XP_193742.2| similar to 40S RIBOSOMAL PROTEIN S3... 206 3e-52
gi|38090771|ref|XP_122093.2| similar to ribosomal protein S3a [M... 205 8e-52
gi|24638499|ref|NP_726518.1| CG2168-PB [Drosophila melanogaster]... 201 2e-50
gi|17369860|sp|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a >gnl|... 196 5e-49
gi|28828640|gb|AAO51243.1| similar to Aplysia californica (Calif... 195 8e-49
gi|34859240|ref|XP_345437.1| similar to 40S RIBOSOMAL PROTEIN S3... 181 1e-44
gi|6531419|gb|AAF15410.1| antigen [Leishmania major] 172 5e-42
gi|25140448|gb|AAN71759.1| 40S ribosomal protein-like protein [I... 170 3e-41
gi|23489809|gb|EAA21728.1| 40S ribosomal protein S3a-related [Pl... 167 2e-40
gi|24638501|ref|NP_726519.1| CG2168-PD [Drosophila melanogaster]... 151 1e-35
gi|48134793|ref|XP_396741.1| similar to ribosomal protein S3A [A... 150 4e-35
gi|38073351|ref|XP_357121.1| similar to 40S RIBOSOMAL PROTEIN S3... 129 7e-29
gi|42661416|ref|XP_375543.1| similar to 40S ribosomal protein S3... 128 1e-28
gi|28189260|dbj|BAC56321.1| similar to ribosomal protein S3a [Bo... 127 3e-28
gi|13812287|ref|NP_113405.1| 40S ribosomal Protein S3a [Guillard... 125 8e-28
gi|42656529|ref|XP_376150.1| similar to ribosomal protein S3a; 4... 120 2e-26
gi|29246582|gb|EAA38173.1| GLP_675_17761_17015 [Giardia lamblia ... 117 4e-25
gi|19173561|ref|NP_597364.1| 40S RIBOSOMAL PROTEIN S3A (LYSIN-RI... 115 8e-25
gi|28189587|dbj|BAC56408.1| similar to ribosomal protein S3a [Bo... 114 2e-24
gi|45269041|gb|AAS55933.1| 40S ribosomal protein S3a [Sus scrofa] 96 1e-18
gi|46141944|ref|ZP_00147454.2| COG1890: Ribosomal protein S3AE [... 87 4e-16
gi|22759731|dbj|BAC10914.1| putative 40S ribosomal protein S3A [... 83 6e-15
gi|20094897|ref|NP_614744.1| Ribosomal protein S3AE [Methanopyru... 82 1e-14
gi|32400861|gb|AAP80662.1| 40S ribosomal protein [Triticum aesti... 82 2e-14
gi|6474784|dbj|BAA87298.1| 40s ribosomal protein RP10 [Schizosac... 78 2e-13
gi|48839179|ref|ZP_00296113.1| COG1890: Ribosomal protein S3AE [... 77 3e-13
gi|14590013|ref|NP_142077.1| 30S ribosomal protein S3a [Pyrococc... 77 5e-13
gi|18978426|ref|NP_579783.1| SSU ribosomal protein S3AE [Pyrococ... 76 9e-13
gi|14520285|ref|NP_125760.1| SSU ribosomal protein S3AE [Pyrococ... 75 1e-12
gi|48474510|sp|Q8TKI9|RS3A_METAC 30S ribosomal protein S3Ae 75 2e-12
gi|28189354|dbj|BAC56368.1| similar to ribosomal protein S3a [Bo... 74 4e-12
gi|21226286|ref|NP_632208.1| SSU ribosomal protein S3AE [Methano... 72 1e-11
gi|18314093|ref|NP_560760.1| ribosomal protein S3 [Pyrobaculum a... 70 4e-11
gi|11499901|ref|NP_071145.1| SSU ribosomal protein S3AE (rps3AE)... 70 5e-11
gi|45358232|ref|NP_987789.1| SSU ribosomal protein S3AE [Methano... 70 6e-11
gi|15679588|ref|NP_276705.1| ribosomal protein S3a [Methanotherm... 67 5e-10
gi|15920665|ref|NP_376334.1| 193aa long hypothetical 30S ribosom... 64 3e-09
gi|15789949|ref|NP_279773.1| 30S ribosomal protein S3E; Rps3e [H... 64 5e-09
gi|2133272|pir||S62679 ribosomal protein S3a, cytosolic - Emeric... 62 1e-08
gi|20092228|ref|NP_618303.1| ribosomal protein S3Ae [Methanosarc... 60 4e-08
gi|14601215|ref|NP_147748.1| 30S ribosomal protein S3 [Aeropyrum... 59 9e-08
gi|4836409|gb|AAD30429.1| 40S ribosomal protein S3A [Avena fatua] 59 9e-08
gi|15669170|ref|NP_247975.1| SSU ribosomal protein S3AE [Methano... 58 2e-07
gi|48478596|ref|YP_024302.1| small subunit ribosomal protein S3A... 58 2e-07
gi|2129269|pir||D64422 ribosomal protein S3a - Methanococcus jan... 57 3e-07
gi|38089965|ref|XP_357960.1| similar to bA486O22.3 (similar to R... 54 3e-06
gi|48853253|ref|ZP_00307433.1| COG1890: Ribosomal protein S3AE [... 54 5e-06
gi|38089275|ref|XP_357885.1| similar to 40S RIBOSOMAL PROTEIN S3... 47 3e-04
gi|13542078|ref|NP_111766.1| 30S ribosomal protein S3AE [Thermop... 47 5e-04
gi|23489808|gb|EAA21727.1| 40S ribosomal protein RP10-related [P... 46 0.001
gi|16082179|ref|NP_394623.1| 30S ribosomal protein S3a related p... 45 0.001
gi|42658148|ref|XP_377957.1| similar to ribosomal protein S3a; 4... 42 0.011
gi|41615164|ref|NP_963662.1| NEQ375 [Nanoarchaeum equitans Kin4-... 41 0.025
gi|4432745|dbj|BAA25814.1| ribosomal protein S3a [Homo sapiens] 40 0.055
gi|45268973|gb|AAS55899.1| 40S ribosomal protein S3A [Sus scrofa] 39 0.12
gi|15895390|ref|NP_348739.1| Predicted enzyme with a TIM-barrel ... 37 0.61
gi|50750824|ref|XP_422162.1| PREDICTED: similar to telomere-asso... 34 3.0
gi|34762533|ref|ZP_00143530.1| IG hypothetical 15594 [Fusobacter... 33 5.2
gi|13195620|ref|NP_077154.1| CUE domain containing 2 [Mus muscul... 33 6.7
gi|19704930|ref|NP_602425.1| Hypothetical protein [Fusobacterium... 33 8.8
gi|49106493|ref|XP_411431.1| hypothetical protein AN7294.2 [Aspe... 33 8.8
>gi|17553700|ref|NP_497910.1| ribosomal Protein, Small subunit (29.0
kD) (rps-1) [Caenorhabditis elegans]
gi|1350982|sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a
gi|630617|pir||S43584 ribosomal protein S3a.F26F3.5, cytosolic -
Caenorhabditis elegans
gi|3877714|emb|CAA83605.1| Hypothetical protein F56F3.5
[Caenorhabditis elegans]
Length = 257
Score = 452 bits (1164), Expect = e-126
Identities = 227/239 (94%), Positives = 227/239 (94%)
Frame = +1
Query: 55 AVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEAD 234
AVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEAD
Sbjct: 19 AVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEAD 78
Query: 235 FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 414
FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI
Sbjct: 79 FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138
Query: 415 AFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKT 594
AFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKT
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKT 198
Query: 595 CSKLYPLQEVYXXXXXXXXXXXXDLGRLHDLHGDSITVGADGEKVDRPDDYEPPVQQEV 771
CSKLYPLQEVY DLGRLHDLHGDSITVGADGEKVDRPDDYEPPVQQEV
Sbjct: 199 CSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYEPPVQQEV 257