Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F59A6_1
(1110 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17534557|ref|NP_494920.1| RiboNuclease H (2F287ANDrnh-1) [Cae... 669 0.0
gi|29570460|gb|AAO91712.1| Hypothetical protein F59A6.9 [Caenorh... 411 e-113
gi|39590890|emb|CAE65264.1| Hypothetical protein CBG10155 [Caeno... 306 4e-82
gi|29570459|gb|AAO91711.1| Hypothetical protein F59A6.6a [Caenor... 268 2e-70
gi|32564524|ref|NP_871982.1| RiboNuclease H (2F287ANDrnh-1) [Cae... 268 2e-70
gi|39591163|emb|CAE73216.1| Hypothetical protein CBG20622 [Caeno... 226 1e-57
gi|18044436|gb|AAH19411.1| Ribonuclease H1 [Mus musculus] 159 1e-37
gi|46249528|gb|AAH68735.1| MGC81203 protein [Xenopus laevis] 158 2e-37
gi|6755334|ref|NP_035405.1| ribonuclease H1 [Mus musculus] >gnl|... 157 3e-37
gi|34863249|ref|XP_216670.2| similar to Ribonuclease H1 [Rattus ... 155 1e-36
gi|2935442|gb|AAC78563.1| ribonuclease H1 [Homo sapiens] >gnl|BL... 154 4e-36
gi|21359816|ref|NP_002927.2| ribonuclease H1; RNase H1 [Homo sap... 154 4e-36
gi|3043447|emb|CAA11835.1| RNase HII [Homo sapiens] 154 4e-36
gi|45384532|ref|NP_990329.1| hypothetical protein LOC395848 [Gal... 153 6e-36
gi|49456597|emb|CAG46619.1| RNASEH1 [Homo sapiens] 153 8e-36
gi|50540386|ref|NP_001002659.1| zgc:91971 [Danio rerio] >gnl|BL_... 142 1e-32
gi|26352958|dbj|BAC40109.1| unnamed protein product [Mus musculus] 142 2e-32
gi|49095728|ref|XP_409325.1| hypothetical protein AN5188.2 [Aspe... 141 3e-32
gi|47214632|emb|CAG01473.1| unnamed protein product [Tetraodon n... 131 3e-29
gi|17137476|ref|NP_477315.1| CG8729-PA [Drosophila melanogaster]... 130 4e-29
gi|45552509|ref|NP_995777.1| CG8729-PB [Drosophila melanogaster]... 130 4e-29
gi|7512023|pir||JC5787 ribonuclease H (EC 3.1.26.4) 1 - fruit fl... 130 5e-29
gi|31223900|ref|XP_317369.1| ENSANGP00000011612 [Anopheles gambi... 130 5e-29
gi|48103399|ref|XP_395566.1| similar to ENSANGP00000011612 [Apis... 125 2e-27
gi|32410249|ref|XP_325605.1| hypothetical protein [Neurospora cr... 117 5e-25
gi|19112918|ref|NP_596126.1| ribonuclease h1 [Schizosaccharomyce... 112 2e-23
gi|50261036|gb|EAL23686.1| hypothetical protein CNBA3330 [Crypto... 111 3e-23
gi|50543514|ref|XP_499923.1| hypothetical protein [Yarrowia lipo... 110 4e-23
gi|11359302|pir||T43641 ribonuclease H1 - fission yeast (Schizos... 110 4e-23
gi|50557008|ref|XP_505912.1| hypothetical protein [Yarrowia lipo... 107 4e-22
gi|15677468|ref|NP_274624.1| ribonuclease HI [Neisseria meningit... 105 1e-21
gi|15794707|ref|NP_284529.1| ribonuclease HI [Neisseria meningit... 105 2e-21
gi|50552764|ref|XP_503792.1| hypothetical protein [Yarrowia lipo... 103 9e-21
gi|49080866|ref|XP_403904.1| hypothetical protein UM06289.1 [Ust... 103 9e-21
gi|22297843|ref|NP_681090.1| ribonuclease H [Thermosynechococcus... 102 2e-20
gi|46130351|ref|ZP_00165181.2| COG0328: Ribonuclease HI [Synecho... 102 2e-20
gi|50543288|ref|XP_499810.1| hypothetical protein [Yarrowia lipo... 102 2e-20
gi|46441053|gb|EAL00353.1| hypothetical protein CaO19.13010 [Can... 101 3e-20
gi|34496711|ref|NP_900926.1| ribonuclease H [Chromobacterium vio... 101 3e-20
gi|39591352|emb|CAE73405.1| Hypothetical protein CBG20847 [Caeno... 101 4e-20
gi|48831932|ref|ZP_00288979.1| COG0328: Ribonuclease HI [Magneto... 101 4e-20
gi|46440930|gb|EAL00231.1| hypothetical protein CaO19.5564 [Cand... 100 5e-20
gi|42524517|ref|NP_969897.1| ribonuclease H [Bdellovibrio bacter... 100 8e-20
gi|15964667|ref|NP_385020.1| PROBABLE RIBONUCLEASE HI PROTEIN [S... 100 8e-20
gi|17227638|ref|NP_484186.1| ribonuclease H [Nostoc sp. PCC 7120... 100 8e-20
gi|46440980|gb|EAL00281.1| hypothetical protein CaO19.5614 [Cand... 100 1e-19
gi|23128536|ref|ZP_00110381.1| COG0328: Ribonuclease HI [Nostoc ... 100 1e-19
gi|42661117|ref|XP_372658.2| similar to Ribonuclease H1 (RNase H... 100 1e-19
gi|46441100|gb|EAL00400.1| hypothetical protein CaO19.13057 [Can... 99 1e-19
gi|48766096|ref|ZP_00270646.1| COG0328: Ribonuclease HI [Rhodosp... 99 2e-19
gi|46316452|ref|ZP_00217031.1| COG0328: Ribonuclease HI [Burkhol... 99 2e-19
gi|30248166|ref|NP_840236.1| probable ribonuclease hi protein [N... 99 2e-19
gi|46320601|ref|ZP_00220987.1| COG0328: Ribonuclease HI [Burkhol... 99 2e-19
gi|33239678|ref|NP_874620.1| Ribonuclease HI [Prochlorococcus ma... 98 3e-19
gi|45682693|ref|ZP_00194128.1| COG0328: Ribonuclease HI [Mesorhi... 98 3e-19
gi|13476236|ref|NP_107806.1| ribonuclease H [Mesorhizobium loti ... 98 3e-19
gi|48788101|ref|ZP_00284080.1| COG0328: Ribonuclease HI [Burkhol... 98 4e-19
gi|41689196|ref|ZP_00145730.1| COG0847: DNA polymerase III, epsi... 97 5e-19
gi|33864357|ref|NP_895917.1| possible ribonuclease HI [Prochloro... 97 7e-19
gi|50543708|ref|XP_500020.1| hypothetical protein [Yarrowia lipo... 97 7e-19
gi|33866868|ref|NP_898427.1| possible ribonuclease HI [Synechoco... 96 1e-18
gi|15888119|ref|NP_353800.1| AGR_C_1417p [Agrobacterium tumefaci... 96 2e-18
gi|18857899|dbj|BAB85475.1| ribonuclease HI [Shewanella sp. SIB1] 96 2e-18
gi|39593762|emb|CAE62055.1| Hypothetical protein CBG06073 [Caeno... 95 3e-18
gi|46203334|ref|ZP_00051665.2| COG0328: Ribonuclease HI [Magneto... 95 3e-18
gi|494542|pdb|1RBT| Ribonuclease H (E.C.3.1.26.4) Mutant With L... 95 3e-18
gi|24374103|ref|NP_718146.1| ribonuclease HI [Shewanella oneiden... 94 4e-18
gi|26246158|ref|NP_752197.1| Ribonuclease HI [Escherichia coli C... 94 6e-18
gi|24111645|ref|NP_706155.1| RNase HI, degrades RNA of DNA-RNA h... 94 6e-18
gi|17546232|ref|NP_519634.1| PROBABLE RIBONUCLEASE HI PROTEIN [R... 94 6e-18
gi|41723080|ref|ZP_00150036.1| COG0328: Ribonuclease HI [Dechlor... 94 7e-18
gi|17987740|ref|NP_540374.1| RIBONUCLEASE HI [Brucella melitensi... 94 7e-18
gi|27376427|ref|NP_767956.1| ribonuclease H [Bradyrhizobium japo... 93 1e-17
gi|48769675|ref|ZP_00274020.1| COG0328: Ribonuclease HI [Ralston... 93 1e-17
gi|46192807|ref|ZP_00005988.2| COG0328: Ribonuclease HI [Rhodoba... 93 1e-17
gi|443089|pdb|1LAV| Ribonuclease H (E.C.3.1.26.4) Mutant With V... 93 1e-17
gi|26990835|ref|NP_746260.1| ribonuclease HI [Pseudomonas putida... 93 1e-17
gi|15964344|ref|NP_384697.1| PROBABLE RIBONUCLEASE HI PROTEIN [S... 92 2e-17
gi|33860760|ref|NP_892321.1| possible ribonuclease HI [Prochloro... 92 2e-17
gi|494543|pdb|1RBU| Ribonuclease H (E.C.3.1.26.4) Mutant With L... 92 2e-17
gi|494541|pdb|1RBS| Ribonuclease H (E.C.3.1.26.4) Mutant With H... 92 2e-17
gi|494544|pdb|1RBV| Ribonuclease H (E.C.3.1.26.4) Mutant With L... 92 2e-17
gi|16127595|ref|NP_422159.1| ribonuclease HI [Caulobacter cresce... 92 2e-17
gi|494050|pdb|1GOB| Ribonuclease H (E.C.3.1.26.4) Mutant With G... 92 2e-17
gi|443090|pdb|1LAW| Ribonuclease H (E.C.3.1.26.4) Mutant With V... 92 2e-17
gi|50421713|ref|XP_459412.1| unnamed protein product [Debaryomyc... 92 2e-17
gi|39997169|ref|NP_953120.1| ribonuclease HI [Geobacter sulfurre... 92 3e-17
gi|494540|pdb|1RBR| Ribonuclease H (E.C.3.1.26.4) Mutant With H... 92 3e-17
gi|230303|pdb|1RNH| Selenomethionyl Ribonuclease H (E.C.3.1.26.4) 92 3e-17
gi|15799890|ref|NP_285902.1| RNase HI, degrades RNA of DNA-RNA h... 92 3e-17
gi|16759249|ref|NP_454866.1| ribonuclease H [Salmonella enterica... 92 3e-17
gi|15597012|ref|NP_250506.1| ribonuclease H [Pseudomonas aerugin... 92 3e-17
gi|32041887|ref|ZP_00139470.1| COG0328: Ribonuclease HI [Pseudom... 92 3e-17
gi|48731656|ref|ZP_00265400.1| COG0328: Ribonuclease HI [Pseudom... 91 4e-17
gi|39937329|ref|NP_949605.1| ribonuclease H [Rhodopseudomonas pa... 91 4e-17
gi|20150576|pdb|1JXB|A Chain A, I53a, A Point Mutant Of The Cyst... 91 4e-17
gi|16121382|ref|NP_404695.1| ribonuclease HI [Yersinia pestis] >... 91 4e-17
gi|50556944|ref|XP_505880.1| hypothetical protein [Yarrowia lipo... 91 5e-17
gi|32041889|ref|ZP_00139472.1| COG0328: Ribonuclease HI [Pseudom... 91 6e-17
gi|443225|pdb|1RDB| Ribonuclease H (E.C.3.1.26.4) Mutant With G... 91 6e-17
gi|12084647|pdb|1F21|A Chain A, Divalent Metal Cofactor Binding ... 91 6e-17
gi|23014347|ref|ZP_00054168.1| COG0328: Ribonuclease HI [Magneto... 91 6e-17
gi|585901|sp|Q07762|RNH1_CRIFA Ribonuclease H (RNase H) >gnl|BL_... 90 8e-17
gi|33598343|ref|NP_885986.1| ribonuclease HI [Bordetella paraper... 90 8e-17
gi|46440929|gb|EAL00230.1| hypothetical protein CaO19.5563 [Cand... 90 1e-16
gi|50084331|ref|YP_045841.1| bifunctional protein [Includes: rib... 90 1e-16
gi|33594118|ref|NP_881762.1| ribonuclease HI [Bordetella pertuss... 90 1e-16
gi|443224|pdb|1RDA| Ribonuclease H (E.C.3.1.26.4) Mutant With A... 90 1e-16
gi|443226|pdb|1RDC| Ribonuclease H (E.C.3.1.26.4) Mutant With A... 90 1e-16
gi|1942213|pdb|1KVC| E. Coli Ribonuclease Hi D134n Mutant 90 1e-16
gi|13787086|pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi W... 89 1e-16
gi|48851215|ref|ZP_00305457.1| COG0328: Ribonuclease HI [Novosph... 89 1e-16
gi|1942212|pdb|1KVB| E. Coli Ribonuclease Hi D134h Mutant 89 2e-16
gi|1942211|pdb|1KVA| E. Coli Ribonuclease Hi D134a Mutant 89 2e-16
gi|37524934|ref|NP_928278.1| ribonuclease HI (RNase HI) (Ribonuc... 88 3e-16
gi|17505482|ref|NP_492581.1| ribonuclease H (1K286) [Caenorhabdi... 88 3e-16
gi|23305918|gb|AAN17340.1| ribonuclease HI [Leishmania major] 88 3e-16
gi|50545063|ref|XP_500083.1| hypothetical protein [Yarrowia lipo... 88 3e-16
gi|2114394|gb|AAC47537.1| ribonuclease H1 [Trypanosoma brucei] 88 3e-16
gi|18466774|ref|NP_569581.1| putative ribonuclease H [Salmonella... 88 4e-16
gi|15642232|ref|NP_231865.1| ribonuclease HI [Vibrio cholerae O1... 87 5e-16
gi|494051|pdb|1GOC| Ribonuclease H (E.C.3.1.26.4) Mutant With G... 87 5e-16
gi|20150465|pdb|1JL1|A Chain A, D10a E. Coli Ribonuclease Hi 87 5e-16
gi|28870867|ref|NP_793486.1| ribonuclease HI [Pseudomonas syring... 87 5e-16
gi|23469154|ref|ZP_00124489.1| COG0328: Ribonuclease HI [Pseudom... 87 5e-16
gi|50122262|ref|YP_051429.1| ribonuclease HI [Erwinia carotovora... 87 5e-16
gi|494049|pdb|1GOA| Ribonuclease H (E.C.3.1.26.4) Mutant With G... 87 7e-16
gi|23103018|ref|ZP_00089511.1| COG0328: Ribonuclease HI [Azotoba... 87 7e-16
gi|46401827|ref|YP_006919.1| putative RNaseH ribonuclease [Bacte... 87 9e-16
gi|42528070|ref|NP_973168.1| ribonuclease HI [Treponema denticol... 86 1e-15
gi|16272105|ref|NP_438307.1| ribonuclease H [Haemophilus influen... 86 2e-15
gi|6323890|ref|NP_013961.1| Ribonuclease H1, removes RNA primers... 86 2e-15
gi|46143222|ref|ZP_00135642.2| COG0328: Ribonuclease HI [Actinob... 85 3e-15
gi|50304317|ref|XP_452108.1| unnamed protein product [Kluyveromy... 85 3e-15
gi|27365233|ref|NP_760761.1| Ribonuclease HI [Vibrio vulnificus ... 85 3e-15
gi|28899067|ref|NP_798672.1| ribonuclease HI [Vibrio parahaemoly... 85 3e-15
gi|30173168|sp|Q8GF77|RNH_PHOLU Ribonuclease H (RNase H) >gnl|BL... 84 6e-15
gi|46128855|ref|ZP_00154365.2| COG0328: Ribonuclease HI [Haemoph... 84 6e-15
gi|15601972|ref|NP_245044.1| Rnh [Pasteurella multocida Pm70] >g... 84 8e-15
gi|48845237|ref|ZP_00299522.1| COG0328: Ribonuclease HI [Geobact... 83 1e-14
gi|21674430|ref|NP_662495.1| ribonuclease H [Chlorobium tepidum ... 82 2e-14
gi|21230448|ref|NP_636365.1| ribonuclease H [Xanthomonas campest... 82 2e-14
gi|28493206|ref|NP_787367.1| ribonuclease H [Tropheryma whipplei... 82 2e-14
gi|32028882|ref|ZP_00132000.1| COG0328: Ribonuclease HI [Haemoph... 82 2e-14
gi|23467696|ref|ZP_00123275.1| COG0328: Ribonuclease HI [Haemoph... 82 2e-14
gi|29653667|ref|NP_819359.1| ribonuclease H [Coxiella burnetii R... 82 2e-14
gi|46324269|ref|ZP_00224630.1| COG0328: Ribonuclease HI [Burkhol... 82 2e-14
gi|48858519|ref|ZP_00312471.1| COG0328: Ribonuclease HI [Clostri... 82 3e-14
gi|46913494|emb|CAG20280.1| hypothetical ribonuclease HI [Photob... 81 4e-14
gi|15639344|ref|NP_218793.1| ribonuclease H (rnhA) [Treponema pa... 81 5e-14
gi|32476346|ref|NP_869340.1| ribonuclease H [Pirellula sp. 1] >g... 81 5e-14
gi|15604563|ref|NP_221081.1| RIBONUCLEASE H (rnhA) [Rickettsia p... 81 5e-14
gi|46579103|ref|YP_009911.1| ribonuclease HI [Desulfovibrio vulg... 80 7e-14
gi|6685891|sp|O69014|RNH_ZYMMO Ribonuclease H (RNase H) >gnl|BL_... 80 7e-14
gi|37523181|ref|NP_926558.1| ribonuclease H [Gloeobacter violace... 80 7e-14
gi|48894126|ref|ZP_00327324.1| COG0328: Ribonuclease HI [Trichod... 80 7e-14
gi|31194799|ref|XP_306347.1| ENSANGP00000014694 [Anopheles gambi... 80 9e-14
gi|15838749|ref|NP_299437.1| ribonuclease H [Xylella fastidiosa ... 79 1e-13
gi|1350806|sp|Q07705|RNH_MYCSM Ribonuclease H (RNase H) >gnl|BL_... 79 1e-13
gi|22994579|ref|ZP_00039077.1| COG0328: Ribonuclease HI [Xylella... 79 1e-13
gi|48864500|ref|ZP_00318393.1| COG0328: Ribonuclease HI [Microbu... 79 1e-13
gi|46914482|emb|CAG21261.1| putative ribonuclease HI [Photobacte... 79 2e-13
gi|28199105|ref|NP_779419.1| ribonuclease H [Xylella fastidiosa ... 79 2e-13
gi|46308884|ref|ZP_00211076.1| COG0328: Ribonuclease HI [Ehrlich... 79 2e-13
gi|45516489|ref|ZP_00168041.1| COG0328: Ribonuclease HI [Ralston... 79 2e-13
gi|50875799|emb|CAG35639.1| probable ribonuclease H [Desulfotale... 78 3e-13
gi|42520189|ref|NP_966104.1| ribonuclease H [Wolbachia endosymbi... 78 3e-13
gi|21362887|sp|Q92GL5|RNH_RICCN Ribonuclease HI (RNase HI) 78 3e-13
gi|42454171|ref|ZP_00154078.1| hypothetical protein Rick106001 [... 78 3e-13
gi|15893031|ref|NP_360745.1| ribonuclease H [EC:3.1.26.4] [Ricke... 78 3e-13
gi|50843189|ref|YP_056416.1| ribonuclease H [Propionibacterium a... 77 6e-13
gi|45506928|ref|ZP_00159276.1| COG0328: Ribonuclease HI [Anabaen... 77 6e-13
gi|21241846|ref|NP_641428.1| ribonuclease H [Xanthomonas axonopo... 77 6e-13
gi|15640525|ref|NP_230152.1| ribonuclease HI, putative [Vibrio c... 77 9e-13
gi|49474004|ref|YP_032046.1| Ribonuclease HI [Bartonella quintan... 77 9e-13
gi|18655792|pdb|1JL2|A Chain A, Crystal Structure Of Tceo Rnase ... 76 1e-12
gi|29827679|ref|NP_822313.1| putative ribonuclease H [Streptomyc... 76 1e-12
gi|45527154|ref|ZP_00178355.1| COG0328: Ribonuclease HI [Crocosp... 76 2e-12
gi|33152311|ref|NP_873664.1| ribonuclease H [Haemophilus ducreyi... 75 2e-12
gi|49475240|ref|YP_033281.1| Ribonuclease HI [Bartonella hensela... 75 2e-12
gi|23473858|ref|ZP_00129153.1| COG0328: Ribonuclease HI [Desulfo... 75 3e-12
gi|21225561|ref|NP_631340.1| putative ribonuclease H [Streptomyc... 74 5e-12
gi|6919966|sp|Q9X7R6|RNH_STRCO Ribonuclease HI (RNase HI) 74 5e-12
gi|50548363|ref|XP_501651.1| hypothetical protein [Yarrowia lipo... 73 1e-11
gi|50290915|ref|XP_447890.1| unnamed protein product [Candida gl... 73 1e-11
gi|33519690|ref|NP_878522.1| ribonuclease H [Candidatus Blochman... 72 2e-11
gi|28897416|ref|NP_797021.1| putative ribonuclease HI [Vibrio pa... 72 2e-11
gi|23466173|ref|NP_696776.1| ribonuclease H [Bifidobacterium lon... 72 2e-11
gi|46199493|ref|YP_005160.1| ribonuclease H [Thermus thermophilu... 71 4e-11
gi|16331755|ref|NP_442483.1| ribonuclease H [Synechocystis sp. P... 71 4e-11
gi|28900295|ref|NP_799950.1| putative ribonuclease HI [Vibrio pa... 70 7e-11
gi|37678700|ref|NP_933309.1| ribonuclease HI [Vibrio vulnificus ... 70 7e-11
gi|401007|sp|P29253|RNH_THETH Ribonuclease H (RNase H) >gnl|BL_O... 70 7e-11
gi|29135091|ref|NP_803721.1| ORF155 [Pseudomonas phage phiKZ] >g... 70 9e-11
gi|20807809|ref|NP_622980.1| Ribonuclease HI [Thermoanaerobacter... 70 1e-10
gi|49236020|ref|ZP_00330083.1| COG0328: Ribonuclease HI [Moorell... 70 1e-10
gi|4357|emb|CAA40448.1| ribonuclease H [Saccharomyces cerevisiae] 69 2e-10
gi|581811|emb|CAA43026.1| ribonuclease h [Thermus thermophilus] 69 2e-10
gi|15805924|ref|NP_294623.1| ribonuclease H [Deinococcus radiodu... 69 2e-10
gi|47574841|ref|ZP_00244876.1| COG0328: Ribonuclease HI [Rubrivi... 69 2e-10
gi|27904726|ref|NP_777852.1| ribonuclease HI [Buchnera aphidicol... 69 3e-10
gi|1200142|emb|CAA65002.1| putative RNaseH [Streptomyces lincoln... 69 3e-10
gi|15792941|ref|NP_282764.1| ribonuclease HI [Campylobacter jeju... 68 4e-10
gi|32490817|ref|NP_871071.1| rnhA [Wigglesworthia glossinidia en... 68 4e-10
gi|46190428|ref|ZP_00206465.1| COG0328: Ribonuclease HI [Bifidob... 67 6e-10
gi|50547429|ref|XP_501184.1| hypothetical protein [Yarrowia lipo... 67 7e-10
gi|48870184|ref|ZP_00322912.1| COG0328: Ribonuclease HI [Pedioco... 67 1e-09
gi|25453501|pir||T52527 probable ribonuclease H (EC 3.1.26.4) [i... 66 1e-09
gi|46109122|ref|XP_381619.1| hypothetical protein FG01443.1 [Gib... 65 4e-09
gi|42518184|ref|NP_964114.1| hypothetical protein LJ0098 [Lactob... 64 5e-09
gi|21672520|ref|NP_660587.1| ribonuclease H [Buchnera aphidicola... 64 5e-09
gi|29246550|gb|EAA38142.1| GLP_384_17374_16316 [Giardia lamblia ... 64 6e-09
gi|17535073|ref|NP_496532.1| putative protein, with a coiled coi... 63 1e-08
gi|48854541|ref|ZP_00308703.1| COG0328: Ribonuclease HI [Cytopha... 62 2e-08
gi|42523605|ref|NP_968985.1| rnhA [Bdellovibrio bacteriovorus HD... 62 3e-08
gi|22972348|ref|ZP_00019231.1| hypothetical protein [Chloroflexu... 62 3e-08
gi|23003383|ref|ZP_00047047.1| COG0328: Ribonuclease HI [Lactoba... 62 3e-08
gi|27262506|gb|AAN87534.1| Ribonuclease H [Heliobacillus mobilis] 61 4e-08
gi|45185213|ref|NP_982930.1| ABL017Cp [Eremothecium gossypii] >g... 60 9e-08
gi|50545157|ref|XP_500116.1| hypothetical protein [Yarrowia lipo... 58 3e-07
gi|50545155|ref|XP_500115.1| hypothetical protein [Yarrowia lipo... 58 3e-07
gi|15645285|ref|NP_207455.1| ribonuclease H (rnhA) [Helicobacter... 57 8e-07
gi|34558194|ref|NP_908009.1| RIBONUCLEASE HI [Wolinella succinog... 57 1e-06
gi|32266197|ref|NP_860229.1| ribonuclease HI [Helicobacter hepat... 56 1e-06
gi|50543706|ref|XP_500019.1| hypothetical protein [Yarrowia lipo... 56 2e-06
gi|28379120|ref|NP_786012.1| ribonuclease H (putative) [Lactobac... 55 2e-06
gi|9630708|ref|NP_047255.1| gag-pol precursor polyprotein gPr80 ... 55 4e-06
gi|40796126|ref|NP_955579.1| reverse transcriptase [Feline leuke... 55 4e-06
gi|40796124|ref|NP_955577.1| pol gene polyprotein [Feline leukem... 55 4e-06
gi|28211765|ref|NP_782709.1| ribonuclease HI [Clostridium tetani... 54 7e-06
gi|37678990|ref|NP_933599.1| ribonuclease HI [Vibrio vulnificus ... 53 1e-05
gi|42560875|ref|NP_975326.1| ribonuclease H-related protein [Myc... 53 1e-05
gi|49136213|ref|XP_413339.1| hypothetical protein AN9202.2 [Aspe... 53 1e-05
gi|15611673|ref|NP_223324.1| RIBONUCLEASE HI [Helicobacter pylor... 53 1e-05
gi|15891752|ref|NP_357424.1| AGR_L_3264p [Agrobacterium tumefaci... 51 4e-05
gi|39597461|emb|CAE59691.1| Hypothetical protein CBG03115 [Caeno... 51 6e-05
gi|17537999|ref|NP_496121.1| predicted CDS, RiboNuclease H and A... 50 9e-05
gi|50255787|gb|EAL18519.1| hypothetical protein CNBJ1610 [Crypto... 50 1e-04
gi|32812829|emb|CAD67562.1| polymerase [Simian foamy virus-orang... 49 2e-04
gi|37680438|ref|NP_935047.1| ribonuclease HI [Vibrio vulnificus ... 49 2e-04
gi|31200569|ref|XP_309232.1| ENSANGP00000015965 [Anopheles gambi... 49 2e-04
gi|9628093|ref|NP_042683.1| gag-pol precursor [Jembrana disease ... 49 2e-04
gi|6524624|gb|AAF15098.1| pol protein [Phascolarctos cinereus] 49 2e-04
gi|625609|pir||A26132 gag-abl-pol polyprotein - feline sarcoma v... 49 2e-04
gi|727181|gb|AAA64258.1| pol 49 3e-04
gi|18310432|ref|NP_562366.1| ribonuclease H-related protein [Clo... 49 3e-04
gi|50255121|gb|EAL17860.1| hypothetical protein CNBL1220 [Crypto... 48 5e-04
gi|130645|sp|P11227|POL_MLVRD Pol polyprotein [Contains: Proteas... 47 6e-04
gi|39597460|emb|CAE59690.1| Hypothetical protein CBG03114 [Caeno... 47 6e-04
gi|7444470|pir||T10532 gag-pol polyprotein precursor - feline le... 47 6e-04
gi|30908471|gb|AAP37287.1| gag-pol polyprotein [Murine leukemia ... 47 6e-04
gi|400821|sp|P31792|POL_FENV1 POL polyprotein [Contains: Reverse... 47 8e-04
gi|1346748|sp|P03355|POL_MLVMO Pol polyprotein [Contains: Protea... 47 8e-04
gi|74601|pir||GNMV1M HIV-1 retropepsin (EC 3.4.23.16) - Moloney ... 47 8e-04
gi|223354|prf||0711245A protein gag/pol/env 47 8e-04
gi|9626961|ref|NP_057933.1| Pr180 [Murine leukemia virus] >gnl|B... 47 8e-04
gi|40796138|ref|NP_955591.1| p80 RT [Murine leukemia virus] 47 8e-04
gi|7510969|pir||T34502 hypothetical protein ZK1290.6 - Caenorhab... 46 0.001
gi|38176087|gb|AAB93313.3| Hypothetical protein ZK1290.6 [Caenor... 46 0.001
gi|32564468|ref|NP_871976.1| RiboNuclease H (2H817) [Caenorhabdi... 46 0.001
gi|17538109|ref|NP_495577.1| RiboNuclease H (2H817) [Caenorhabdi... 46 0.001
gi|542601|pir||S37765 hypothetical protein - fruit fly (Drosophi... 46 0.002
gi|13940448|gb|AAK50381.1| pol precursor protein [Murine leukemi... 46 0.002
gi|1335691|emb|CAA41925.1| unnamed protein product [Drosophila m... 46 0.002
gi|39596026|emb|CAE67529.1| Hypothetical protein CBG13051 [Caeno... 46 0.002
gi|18448744|gb|AAL69910.1| Pr180 gag-pro-pol polyprotein [Molone... 45 0.002
gi|6723273|dbj|BAA89659.1| gag-pol precursor polyprotein [Baboon... 45 0.002
gi|400824|sp|P31795|POL_MLVRK Pol polyprotein [Contains: Proteas... 45 0.002
gi|130585|sp|P10272|POL_BAEVM Pol polyprotein [Contains: Proteas... 45 0.002
gi|15644051|ref|NP_229100.1| ribonuclease H-related protein [The... 45 0.002
gi|39597459|emb|CAE59689.1| Hypothetical protein CBG03113 [Caeno... 45 0.003
gi|130641|sp|P26810|POL_MLVF5 Pol polyprotein [Contains: Proteas... 45 0.003
gi|15895813|ref|NP_349162.1| RNAse H family protein [Clostridium... 45 0.003
gi|130656|sp|P27973|POL_SIVA1 Pol polyprotein [Contains: Proteas... 45 0.003
gi|16118312|gb|AAL12686.1| pol protein [Human immunodeficiency v... 45 0.004
gi|74602|pir||GNMVGV HIV-1 retropepsin (EC 3.4.23.16) - AKV muri... 45 0.004
gi|13959690|sp|P03356|POL_MLVAV Pol polyprotein [Contains: Prote... 45 0.004
gi|927201|gb|AAA79247.1| reverse transcriptase 45 0.004
gi|199851|gb|AAA39757.1| pol protein 45 0.004
gi|130638|sp|P03357|POL_MLVAK POL polyprotein [Contains: Reverse... 45 0.004
gi|1498648|gb|AAB06450.1| Gag-Pol polyprotein 45 0.004
gi|331995|gb|AAB03091.1| gag-pol polyprotein (tag amber codon at... 45 0.004
gi|5881091|gb|AAD55051.1| putative gag-pol polyprotein [Murine l... 45 0.004
gi|38892774|gb|AAR27765.1| pol protein [Human immunodeficiency v... 45 0.004
gi|2281588|gb|AAB64160.1| Pol [synthetic construct] 44 0.005
gi|9629516|ref|NP_044738.1| Pol [Rauscher murine leukemia virus]... 44 0.005
gi|9626097|ref|NP_040333.1| RNA-dependent DNA polymerase [Friend... 44 0.005
gi|4959869|gb|AAD34536.1| polymerase [Murine leukemia virus] 44 0.005
gi|47209046|emb|CAF92685.1| unnamed protein product [Tetraodon n... 44 0.005
gi|74631|pir||GNLJGG HIV-1 retropepsin (EC 3.4.23.16) - human im... 44 0.005
gi|2150144|gb|AAB58752.1| reverse transcriptase [Murine leukemia... 44 0.005
gi|44890289|gb|AAH66867.1| Unknown (protein for MGC:76738) [Mus ... 44 0.005
gi|50254997|gb|EAL17737.1| hypothetical protein CNBL2510 [Crypto... 44 0.005
gi|34391481|gb|AAN46639.1| truncated pol/envelope fusion protein... 44 0.005
gi|2351212|dbj|BAA22064.1| gag-pol polyprotein (precursor protei... 44 0.007
gi|16118365|gb|AAL12731.1| pol protein [Human immunodeficiency v... 44 0.007
gi|23111680|ref|ZP_00097279.1| COG3341: Predicted double-strande... 44 0.007
gi|26554395|ref|NP_758329.1| ribonuclease H-related protein [Myc... 44 0.007
gi|28972760|dbj|BAC65796.1| mKIAA1466 protein [Mus musculus] 44 0.007
gi|49887108|gb|AAT68795.1| pol protein [Simian immunodeficiency ... 44 0.007
gi|50543600|ref|XP_499966.1| hypothetical protein [Yarrowia lipo... 44 0.007
gi|17046593|gb|AAL34626.1| pol protein [Human immunodeficiency v... 44 0.009
gi|7511795|pir||T30319 Lian-Aa1 retrotransposition protein - yel... 44 0.009
gi|45360177|gb|AAS59212.1| pol protein [Human immunodeficiency v... 44 0.009
gi|37935871|gb|AAO47121.1| pol protein [Human immunodeficiency v... 44 0.009
gi|11078529|gb|AAG29093.1| putative gag-pro-pol polyprotein [DG-... 44 0.009
gi|11385961|gb|AAG35044.1| pol protein [Human immunodeficiency v... 44 0.009
gi|50552380|ref|XP_503600.1| hypothetical protein [Yarrowia lipo... 44 0.009
gi|4324823|gb|AAD17087.1| gag-pol polyprotein [Human immunodefic... 43 0.012
gi|5668912|gb|AAD46066.1| pol protein [Human immunodeficiency vi... 43 0.012
gi|16118341|gb|AAL12710.1| pol protein [Human immunodeficiency v... 43 0.012
gi|38491899|gb|AAR22266.1| pol protein [Human immunodeficiency v... 43 0.012
gi|130643|sp|P26808|POL_MLVFP Pol polyprotein [Contains: Proteas... 43 0.012
gi|45360167|gb|AAS59203.1| pol protein [Human immunodeficiency v... 43 0.012
gi|16118329|gb|AAL12700.1| pol protein [Human immunodeficiency v... 43 0.012
gi|6137697|pdb|1QHK|A Chain A, N-Terminal Domain Of Saccharomyce... 43 0.015
gi|9965930|gb|AAG10201.1| polyprotein [Murine leukemia virus] 43 0.015
gi|130660|sp|P05895|POL_SIVAT Pol polyprotein [Contains: Proteas... 43 0.015
gi|4469306|emb|CAA30658.1| pol polyprotein [Simian immunodeficie... 43 0.015
gi|37935861|gb|AAO47112.1| pol protein [Human immunodeficiency v... 43 0.015
gi|14579604|gb|AAK69322.1| pol protein [Human immunodeficiency v... 43 0.015
gi|5106564|gb|AAD39753.1| Pol protein [Simian immunodeficiency v... 43 0.015
gi|11385959|gb|AAG35043.1| pol protein [Human immunodeficiency v... 43 0.015
gi|28892671|gb|AAO61197.1| Gag-Pro-Pol polyprotein [amphotropic ... 43 0.015
gi|24181479|gb|AAN47101.1| pol protein [Human immunodeficiency v... 42 0.020
gi|29119316|gb|AAO63232.1| pol protein [Human immunodeficiency v... 42 0.020
gi|45358400|ref|NP_987957.1| RNase HI related protein [Methanoco... 42 0.020
gi|29348800|ref|NP_812303.1| ribonuclease H-related protein [Bac... 42 0.020
gi|28827198|gb|AAO46152.1| pol protein [Recombinant M-MuLV/RaLV ... 42 0.020
gi|4071076|gb|AAC98548.1| pol polypeptide [Murine leukemia virus] 42 0.020
gi|17046583|gb|AAL34617.1| pol protein [Human immunodeficiency v... 42 0.020
gi|28827189|gb|AAO46146.1| pol protein [Recombinant M-MuLV/RaLV ... 42 0.020
gi|2343269|gb|AAC59310.1| pol polyprotein [walleye epidermal hyp... 42 0.020
gi|31559632|dbj|BAC77459.1| Gag-Pol fusion polyprotein [Human im... 42 0.020
gi|47680177|gb|AAT37062.1| pol/vif protein [Human immunodeficien... 42 0.020
gi|4808993|gb|AAD30048.1| pol polyprotein [walleye epidermal hyp... 42 0.020
gi|3776305|gb|AAC64711.1| reverse transcriptase [Human immunodef... 42 0.020
gi|11385963|gb|AAG35045.1| pol protein [Human immunodeficiency v... 42 0.020
gi|535518|gb|AAA92679.1| gag-pol polyprotein 42 0.020
gi|2570326|gb|AAC32654.1| pol polyprotein [Human immunodeficienc... 42 0.026
gi|18076262|emb|CAC82505.1| Pol protein [Porcine endogenous retr... 42 0.026
gi|1585197|prf||2124336A RNase HI 42 0.026
gi|469241|gb|AAA44860.1| pol polyprotein 42 0.026
gi|130586|sp|P19560|POL_BIV06 Pol polyprotein [Contains: Proteas... 42 0.026
gi|9626221|ref|NP_040563.1| reverse transcriptase [Bovine immuno... 42 0.026
gi|994732|gb|AAC78249.1| polymerase [Rat leukemia virus] 42 0.026
gi|474936|emb|CAA55543.1| reverse transcriptase [Murine leukemia... 42 0.026
gi|2232039|gb|AAB82087.1| reverse transcriptase [Human immunodef... 42 0.026
gi|74635|pir||GNLJBT HIV-1 retropepsin (EC 3.4.23.16) - bovine i... 42 0.026
gi|11385957|gb|AAG35042.1| pol protein [Human immunodeficiency v... 42 0.026
gi|9944518|gb|AAG02702.1| pol protein [Equine infectious anemia ... 42 0.034
gi|1334942|emb|CAA41394.1| pol [Simian foamy virus] 42 0.034
gi|15787960|gb|AAL07550.1| pol polyprotein [Human immunodeficien... 42 0.034
gi|50507471|emb|CAE45098.2| Hypothetical protein T09F3.5 [Caenor... 42 0.034
gi|11385955|gb|AAG35041.1| pol protein [Human immunodeficiency v... 42 0.034
gi|400825|sp|P23074|POL_SFV1 POL polyprotein [Contains: Protease... 42 0.034
gi|17536173|ref|NP_496238.1| putative protein, with 2 coiled coi... 42 0.034
gi|30026465|gb|AAP06677.1| pol protein [Human endogenous retrovi... 42 0.034
gi|49887120|gb|AAT68803.1| pol protein [Simian immunodeficiency ... 42 0.034
gi|210721|gb|AAA42767.1| pol polyprotein 42 0.034
gi|11385965|gb|AAG35046.1| pol protein [Human immunodeficiency v... 42 0.034
gi|31559624|dbj|BAC77452.1| Gag-Pol fusion polyprotein [Human im... 42 0.034
gi|94209|pir||S15566 pol protein - simian foamy virus 42 0.034
gi|1346747|sp|P18042|POL_HV2G1 Pol polyprotein [Contains: Protea... 41 0.044
gi|15788278|gb|AAL07727.1| pol polyprotein [Human immunodeficien... 41 0.044
gi|18026828|gb|AAL55639.1| pol protein [Simian-Human immunodefic... 41 0.044
gi|1332356|gb|AAB00737.1| pol polyprotein [Human immunodeficienc... 41 0.044
gi|130672|sp|P23426|POL_VILV1 Pol polyprotein [Contains: Proteas... 41 0.044
gi|21898538|ref|NP_663784.1| gag-pol fusion polyprotein [Human i... 41 0.044
gi|5668940|gb|AAD46088.1| pol polyprotein [Human immunodeficienc... 41 0.044
gi|37935891|gb|AAO47138.1| pol protein [Human immunodeficiency v... 41 0.044
gi|9929862|dbj|BAB12104.1| pol polyprotein [Equine infectious an... 41 0.044
gi|3776301|gb|AAC64709.1| reverse transcriptase [Human immunodef... 41 0.044
gi|130623|sp|P18096|POL_HV2BE Pol polyprotein [Contains: Proteas... 41 0.044
gi|3776303|gb|AAC64710.1| reverse transcriptase [Human immunodef... 41 0.044
gi|37935951|gb|AAO47191.1| pol protein [Human immunodeficiency v... 41 0.044
gi|290629|gb|AAA43004.1| reverse transcriptase 41 0.057
gi|9626532|ref|NP_056902.1| pol polyprotein [Equine infectious a... 41 0.057
gi|323838|gb|AAB59862.1| pol polyprotein 41 0.057
gi|3248895|gb|AAC24015.1| polymerase polyprotein [Equine infecti... 41 0.057
gi|130595|sp|P11204|POL_EIAV9 Pol polyprotein [Contains: Proteas... 41 0.057
gi|417517|sp|P32542|POL_EIAVC Pol polyprotein [Contains: Proteas... 41 0.057
gi|1072794|pir||S53092 pol polyprotein - human immunodeficiency ... 41 0.057
gi|15788248|gb|AAL07700.1| pol polyprotein [Human immunodeficien... 41 0.057
gi|16118375|gb|AAL12740.1| pol protein [Human immunodeficiency v... 41 0.057
gi|38892600|gb|AAR27610.1| pol protein [Human immunodeficiency v... 41 0.057
gi|130596|sp|P03371|POL_EIAVY Pol polyprotein [Contains: Proteas... 41 0.057
gi|45360187|gb|AAS59221.1| pol protein [Human immunodeficiency v... 41 0.057
gi|24181499|gb|AAN47119.1| pol protein [Human immunodeficiency v... 41 0.057
gi|38491811|gb|AAR22187.1| pol protein [Human immunodeficiency v... 41 0.057
gi|37935911|gb|AAO47155.1| pol protein [Human immunodeficiency v... 41 0.057
gi|50543048|ref|XP_499690.1| hypothetical protein [Yarrowia lipo... 41 0.057
gi|11385969|gb|AAG35048.1| pol protein [Human immunodeficiency v... 41 0.057
gi|37935851|gb|AAO47103.1| pol protein [Human immunodeficiency v... 41 0.057
gi|6093153|emb|CAB58985.1| POL protein [Human immunodeficiency v... 41 0.057
gi|14579594|gb|AAK69313.1| pol protein [Human immunodeficiency v... 40 0.075
gi|1332358|gb|AAB00746.1| pol polyprotein 40 0.075
gi|38892755|gb|AAR27748.1| pol protein [Human immunodeficiency v... 40 0.075
gi|38892637|gb|AAR27643.1| pol protein [Human immunodeficiency v... 40 0.075
gi|2160378|dbj|BAA00863.1| pol polyprotein [Simian immunodeficie... 40 0.075
gi|7583329|gb|AAA47633.2| pol polyprotein [Simian immunodeficien... 40 0.075
gi|13383731|gb|AAK21106.1| pol polyprotein [Equine infectious an... 40 0.075
gi|13383738|gb|AAK21112.1| pol polyprotein [Equine infectious an... 40 0.075
gi|325766|gb|AAA43942.1| pol polyprotein 40 0.075
gi|334661|gb|AAB59906.1| pol polyprotein [Simian immunodeficienc... 40 0.075
gi|45360210|gb|AAS59241.1| pol protein [Human immunodeficiency v... 40 0.075
gi|9629916|ref|NP_046123.1| pol [Simian-Human immunodeficiency v... 40 0.075
gi|28827192|gb|AAO46148.1| pol protein [Recombinant M-MuLV/RaLV ... 40 0.075
gi|37935908|gb|AAP42148.1| pol protein [Human immunodeficiency v... 40 0.075
gi|130627|sp|P12451|POL_HV2SB Pol polyprotein [Contains: Proteas... 40 0.075
gi|9929869|dbj|BAB12110.1| pol polyprotein [Equine infectious an... 40 0.075
gi|17046839|gb|AAL34847.1| pol protein [Human immunodeficiency v... 40 0.075
gi|8927259|gb|AAF82029.1| pol protein [Human immunodeficiency vi... 40 0.098
gi|17902138|gb|AAL47803.1| pol protein [Human immunodeficiency v... 40 0.098
gi|11385953|gb|AAG35040.1| pol protein [Human immunodeficiency v... 40 0.098
gi|1890639|gb|AAC57052.1| Pol 40 0.098
gi|47118261|gb|AAT11247.1| pol protein [Human immunodeficiency v... 40 0.098
gi|45360147|gb|AAS59185.1| pol protein [Human immunodeficiency v... 40 0.098
gi|130663|sp|P05896|POL_SIVM1 Pol polyprotein [Contains: Proteas... 40 0.098
gi|37935970|gb|AAO47208.1| pol protein [Human immunodeficiency v... 40 0.098
gi|14091532|gb|AAK53785.1| reverse transcriptase [Human immunode... 40 0.098
gi|1845206|gb|AAB47781.1| pol polyprotein [Human immunodeficienc... 40 0.13
gi|17046663|gb|AAL34689.1| pol protein [Human immunodeficiency v... 40 0.13
gi|130630|sp|P20876|POL_HV2ST Pol polyprotein [Contains: Proteas... 40 0.13
gi|17902105|gb|AAL47776.1| pol protein [Human immunodeficiency v... 40 0.13
gi|24181489|gb|AAN47110.1| pol protein [Human immunodeficiency v... 40 0.13
gi|17902127|gb|AAL47794.1| pol protein [Human immunodeficiency v... 40 0.13
gi|17902116|gb|AAL47785.1| pol protein [Human immunodeficiency v... 40 0.13
gi|17864032|gb|AAL47027.1| pol protein [Human immunodeficiency v... 40 0.13
gi|16118395|gb|AAL12758.1| pol protein [Human immunodeficiency v... 40 0.13
gi|37221464|gb|AAQ89861.1| pol protein [Human immunodeficiency v... 40 0.13
gi|17902149|gb|AAL47812.1| pol protein [Human immunodeficiency v... 40 0.13
gi|2065473|gb|AAB54043.1| pol polyprotein [Simian immunodeficien... 40 0.13
gi|45360190|gb|AAS59223.1| pol protein [Human immunodeficiency v... 40 0.13
gi|1339799|gb|AAB01352.1| pol polyprotein 40 0.13
gi|21539310|gb|AAM51650.1| pol polyprotein [Visna virus] 40 0.13
gi|37935980|gb|AAO47217.1| pol protein [Human immunodeficiency v... 40 0.13
gi|41056787|gb|AAR98769.1| pol protein [Human immunodeficiency v... 40 0.13
gi|41056777|gb|AAR98760.1| pol protein [Human immunodeficiency v... 40 0.13
gi|37935841|gb|AAO47094.1| pol protein [Human immunodeficiency v... 40 0.13
gi|37935931|gb|AAO47173.1| pol protein [Human immunodeficiency v... 40 0.13
gi|14164888|gb|AAK55275.1| pol protein [Simian immunodeficiency ... 40 0.13
gi|263958|gb|AAB25033.1| reverse transcriptase [Human immunodefi... 40 0.13
gi|885617|gb|AAC55688.1| reverse transcriptase 40 0.13
gi|13891872|gb|AAG50315.1| pol polyprotein [Human immunodeficien... 40 0.13
gi|1732476|gb|AAB38824.1| Gag-Pol fusion polyprotein [Human immu... 40 0.13
gi|3114549|gb|AAD03169.1| Gag-Pol fusion polyprotein [Human immu... 40 0.13
gi|50365292|ref|YP_053717.1| ribonuclease HI [Mesoplasma florum ... 40 0.13
gi|24181509|gb|AAN47128.1| pol protein [Human immunodeficiency v... 39 0.17
gi|1332362|gb|AAB00764.1| pol polyprotein 39 0.17
gi|38892737|gb|AAR27732.1| pol protein [Human immunodeficiency v... 39 0.17
gi|4007993|gb|AAC95341.1| pol polyprotein [Human immunodeficienc... 39 0.17
gi|3779268|gb|AAD03316.1| gag-pol fusion polyprotein [Human immu... 39 0.17
gi|15788288|gb|AAL07736.1| pol polyprotein [Human immunodeficien... 39 0.17
gi|38491480|gb|AAR21892.1| pol protein [Human immunodeficiency v... 39 0.17
gi|49090800|ref|XP_406861.1| hypothetical protein AN2724.2 [Aspe... 39 0.17
gi|22596319|gb|AAN03101.1| pol protein [Human immunodeficiency v... 39 0.17
gi|130622|sp|P17757|POL_HV2D1 Pol polyprotein [Contains: Proteas... 39 0.17
gi|16118302|gb|AAL12677.1| pol protein [Human immunodeficiency v... 39 0.17
gi|22596253|gb|AAN03043.1| pol protein [Human immunodeficiency v... 39 0.17
gi|32344837|gb|AAM82293.1| pol protein [Human immunodeficiency v... 39 0.17
gi|45360200|gb|AAS59232.1| pol protein [Human immunodeficiency v... 39 0.17
gi|94292|pir||S12153 pol polyprotein - human immunodeficiency vi... 39 0.17
gi|24987805|pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Rever... 39 0.17
gi|1332360|gb|AAB00755.1| pol polyprotein 39 0.17
gi|130628|sp|P05962|POL_HV2NZ Pol polyprotein [Contains: Proteas... 39 0.17
gi|11385967|gb|AAG35047.1| pol protein [Human immunodeficiency v... 39 0.17
gi|38892699|gb|AAR27698.1| pol protein [Human immunodeficiency v... 39 0.17
gi|130629|sp|P04584|POL_HV2RO Pol polyprotein [Contains: Proteas... 39 0.17
gi|32261456|gb|AAP76521.1| gag-pol fusion polyprotein precursor ... 39 0.17
gi|37935941|gb|AAO47182.1| pol protein [Human immunodeficiency v... 39 0.22
gi|26245450|gb|AAN77380.1| pol protein [Human immunodeficiency v... 39 0.22
gi|26000265|gb|AAN75299.1| pol protein [Human immunodeficiency v... 39 0.22
gi|38892620|gb|AAR27628.1| pol protein [Human immunodeficiency v... 39 0.22
gi|37682431|gb|AAQ98128.1| pol protein [Human immunodeficiency v... 39 0.22
gi|37683027|gb|AAQ98584.1| pol protein [Human immunodeficiency v... 39 0.22
gi|33331456|gb|AAQ10902.1| pol protein [Human immunodeficiency v... 39 0.22
gi|32189800|gb|AAP75711.1| pol protein [Human immunodeficiency v... 39 0.22
gi|12407074|emb|CAC24835.1| polymerase [Human immunodeficiency v... 39 0.22
gi|47214846|emb|CAF95752.1| unnamed protein product [Tetraodon n... 39 0.22
gi|38892610|gb|AAR27619.1| pol protein [Human immunodeficiency v... 39 0.22
gi|15281500|gb|AAK94282.1| pol protein [Human immunodeficiency v... 39 0.22
gi|38892655|gb|AAR27659.1| pol protein [Human immunodeficiency v... 39 0.22
gi|15281421|gb|AAK94211.1| pol protein [Human immunodeficiency v... 39 0.22
gi|130624|sp|P24107|POL_HV2CA Pol polyprotein [Contains: Proteas... 39 0.22
gi|334697|gb|AAA91931.1| pol polyprotein 39 0.22
gi|15789547|ref|NP_279371.1| Vng0255c [Halobacterium sp. NRC-1] ... 39 0.22
gi|17046523|gb|AAL34563.1| pol protein [Human immunodeficiency v... 39 0.22
gi|5835468|ref|NP_008391.1|ND5_13342 NADH dehydrogenase subunit ... 39 0.22
gi|2160333|dbj|BAA00710.1| pol protein [Human immunodeficiency v... 39 0.22
gi|13891916|gb|AAG50337.1| pol polyprotein [Human immunodeficien... 39 0.22
gi|14091498|gb|AAK53768.1| reverse transcriptase [Human immunode... 39 0.22
gi|14091534|gb|AAK53786.1| reverse transcriptase [Human immunode... 39 0.22
gi|15788268|gb|AAL07718.1| pol polyprotein [Human immunodeficien... 39 0.28
gi|17981620|gb|AAL51090.1| pol protein [Human immunodeficiency v... 39 0.28
gi|17902094|gb|AAL47767.1| pol protein [Human immunodeficiency v... 39 0.28
gi|130614|sp|P04588|POL_HV1MA Pol polyprotein [Contains: Proteas... 39 0.28
gi|17864042|gb|AAL47036.1| pol protein [Human immunodeficiency v... 39 0.28
gi|46849799|ref|NP_783621.1| RIKEN cDNA A730027B03 gene [Mus mus... 39 0.28
gi|37682861|gb|AAQ98438.1| pol protein [Human immunodeficiency v... 39 0.28
>gi|17534557|ref|NP_494920.1| RiboNuclease H (2F287ANDrnh-1)
[Caenorhabditis elegans]
gi|7504733|pir||T16506 hypothetical protein F59A6.6 - Caenorhabditis
elegans
Length = 369
Score = 669 bits (1725), Expect = 0.0
Identities = 332/369 (89%), Positives = 332/369 (89%)
Frame = +1
Query: 1 MSKFYGVAHGFKRGVFTEWAEAKKQIDKFPQPVYKKFETEEEAQKYVDDRKPKKVESTFP 180
MSKFYGVAHGFKRGVFTEWAEAKKQIDKFPQPVYKKFETEEEAQKYVDDRKPKKVESTFP
Sbjct: 1 MSKFYGVAHGFKRGVFTEWAEAKKQIDKFPQPVYKKFETEEEAQKYVDDRKPKKVESTFP 60
Query: 181 ESTHDTYYAVARGHSVGVFTNYNEVKEHIKNYPQPLHKKWSTLEEAIAYFHXXXXXXXXX 360
ESTHDTYYAVARGHSVGVFTNYNEVKEHIKNYPQPLHKKWSTLEEAIAYFH
Sbjct: 61 ESTHDTYYAVARGHSVGVFTNYNEVKEHIKNYPQPLHKKWSTLEEAIAYFHKYYEGKEEA 120
Query: 361 XXXXXXXXPDKSEKRESKRKADQEESVXXXXXXXXXXXXXXXXXXXXVADNMSVPGSKPV 540
PDKSEKRESKRKADQEESV VADNMSVPGSKPV
Sbjct: 121 KKAENEEKPDKSEKRESKRKADQEESVEKKKKKKFKKFATEAEARKFVADNMSVPGSKPV 180
Query: 541 TPAVSTSSATRKRTHEGTKFTEAKKMKTEEEVIDPEFANAPVVYTDGACSSNGTKNAKAG 720
TPAVSTSSATRKRTHEGTKFTEAKKMKTEEEVIDPEFANAPVVYTDGACSSNGTKNAKAG
Sbjct: 181 TPAVSTSSATRKRTHEGTKFTEAKKMKTEEEVIDPEFANAPVVYTDGACSSNGTKNAKAG 240
Query: 721 WGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQKAIEKAIEKRLPKVVIKTDSNLLVQSMN 900
WGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQKAIEKAIEKRLPKVVIKTDSNLLVQSMN
Sbjct: 241 WGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQKAIEKAIEKRLPKVVIKTDSNLLVQSMN 300
Query: 901 IWIHGWKRKGWKTSTGSEVLNQDVLMKIDNLRQKLKVKFLHVRGHAGIDGNEKADELARK 1080
IWIHGWKRKGWKTSTGSEVLNQDVLMKIDNLRQKLKVKFLHVRGHAGIDGNEKADELARK
Sbjct: 301 IWIHGWKRKGWKTSTGSEVLNQDVLMKIDNLRQKLKVKFLHVRGHAGIDGNEKADELARK 360
Query: 1081 GAQMFIKRS 1107
GAQMFIKRS
Sbjct: 361 GAQMFIKRS 369