Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= H12C20_2
(234 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17562798|ref|NP_505934.1| post Meiotic Segregation related (p... 168 2e-41
gi|17562796|ref|NP_505933.1| post Meiotic Segregation related (p... 47 1e-04
gi|39592120|emb|CAE75340.1| Hypothetical protein CBG23320 [Caeno... 46 2e-04
gi|50259094|gb|EAL21771.1| hypothetical protein CNBC4730 [Crypto... 35 0.32
gi|6679397|ref|NP_032912.1| postmeiotic segregation increased 2;... 35 0.42
gi|47226069|emb|CAG04443.1| unnamed protein product [Tetraodon n... 35 0.55
gi|34870411|ref|XP_213712.2| similar to PMS2 [Rattus norvegicus] 35 0.55
gi|17136970|ref|NP_477023.1| CG8169-PA [Drosophila melanogaster]... 34 0.94
gi|17863002|gb|AAL39978.1| SD07911p [Drosophila melanogaster] 34 0.94
gi|3193224|gb|AAC19245.1| mutL homolog PMS2 [Drosophila melanoga... 34 0.94
gi|38110329|gb|EAA56065.1| hypothetical protein MG01716.4 [Magna... 33 1.2
gi|19115329|ref|NP_594417.1| DNA mismatch repair protein pms1 [S... 33 1.2
gi|19112991|ref|NP_596199.1| putative DNA mismatch repair protei... 33 1.2
gi|46110094|ref|XP_382105.1| hypothetical protein FG01929.1 [Gib... 33 1.6
gi|557470|gb|AAA50390.1| similar to S. cerevisiae PMS1 Swiss-Pro... 32 2.7
gi|4505913|ref|NP_000526.1| PMS2; DNA mismatch repair gene homol... 32 2.7
gi|41350089|gb|AAS00390.1| unknown [Homo sapiens] 32 2.7
gi|42657769|ref|XP_374461.2| similar to PMS5 homolog mismatch re... 32 2.7
gi|47092694|ref|ZP_00230480.1| DNA mismatch repair protein MutL ... 32 2.7
gi|42658156|ref|XP_377962.1| postmeiotic segregation increased 2... 32 2.7
gi|46907632|ref|YP_014021.1| DNA mismatch repair protein MutL [L... 32 2.7
gi|16800509|ref|NP_470777.1| DNA mismatch repair protein [Lister... 32 2.7
gi|47095355|ref|ZP_00232965.1| DNA mismatch repair protein MutL ... 32 2.7
gi|45709253|gb|AAH67809.1| Unknown (protein for IMAGE:5284726) [... 32 2.7
gi|17942770|pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhp... 32 2.7
gi|1082696|pir||JC2398 PMS3 homolog mismatch repair protein - human 32 2.7
gi|1304121|dbj|BAA07511.1| PMS3 [Homo sapiens] >gnl|BL_ORD_ID|13... 32 2.7
gi|17942778|pdb|1H7U|A Chain A, Hpms2-Atpgs >gnl|BL_ORD_ID|18223... 32 2.7
gi|17942780|pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Hum... 32 2.7
gi|16803444|ref|NP_464929.1| DNA mismatch repair protein [Lister... 32 2.7
gi|31873629|emb|CAD97782.1| hypothetical protein [Homo sapiens] 32 2.7
gi|21619309|gb|AAH31832.1| PMS2 postmeiotic segregation increase... 32 2.7
gi|1082701|pir||JC2403 PMS8 homolog mismatch repair protein - hu... 32 2.7
gi|4239950|dbj|BAA74753.1| PMS2L13 [Homo sapiens] 32 2.7
gi|1082698|pir||JC2400 PMS5 homolog mismatch repair protein - hu... 32 2.7
gi|1082699|pir||JC2401 PMS6 homolog mismatch repair protein - hu... 32 2.7
gi|1061426|gb|AAA97460.1| hPMSR6 32 2.7
gi|4885553|ref|NP_005386.1| postmeiotic segregation increased 2-... 32 2.7
gi|50750029|ref|XP_421840.1| PREDICTED: similar to PMS1 protein ... 32 3.6
gi|39979139|emb|CAE85513.1| related to DNA mismatch repair prote... 32 3.6
gi|32398785|emb|CAD98495.1| putative transcription regulatory pr... 32 3.6
gi|46229015|gb|EAK89864.1| cdc39p protein-like; C-terminal Not1,... 32 3.6
gi|50257842|gb|EAL20543.1| hypothetical protein CNBE4630 [Crypto... 32 3.6
gi|1055354|gb|AAA97458.1| hPMSR2 32 3.6
gi|14250028|gb|AAH08410.1| PMS1 protein [Homo sapiens] >gnl|BL_O... 32 3.6
gi|4505911|ref|NP_000525.1| postmeiotic segregation 1; human hom... 32 3.6
gi|32416496|ref|XP_328726.1| hypothetical protein [Neurospora cr... 32 3.6
gi|50427777|ref|XP_462501.1| unnamed protein product [Debaryomyc... 32 3.6
gi|30584133|gb|AAP36315.1| Homo sapiens PMS1 postmeiotic segrega... 32 3.6
gi|31199375|ref|XP_308635.1| ENSANGP00000007566 [Anopheles gambi... 32 4.7
gi|1082697|pir||JC2399 PMS4 homolog mismatch repair protein - human 32 4.7
gi|49084068|ref|XP_404263.1| hypothetical protein AN0126.2 [Aspe... 32 4.7
gi|49097986|ref|XP_410453.1| hypothetical protein AN6316.2 [Aspe... 32 4.7
gi|1304125|dbj|BAA07514.1| PMS4 [Homo sapiens] >gnl|BL_ORD_ID|96... 31 6.1
gi|42658463|ref|XP_374475.2| similar to PMS2L13 [Homo sapiens] 31 6.1
gi|22086978|gb|AAM90827.1| basal body protein NBP-2 [Naegleria g... 31 6.1
gi|1082700|pir||JC2402 PMS7 homolog mismatch repair protein - human 31 6.1
gi|1304124|dbj|BAA07513.1| PMS7 [Homo sapiens] >gnl|BL_ORD_ID|29... 31 6.1
gi|45198322|ref|NP_985351.1| AFL199Cp [Eremothecium gossypii] >g... 31 6.1
gi|22086975|gb|AAM90826.1| basal body protein NBP-1 [Naegleria g... 31 6.1
gi|48857811|ref|ZP_00311791.1| COG0323: DNA mismatch repair enzy... 31 7.9
gi|23956336|ref|NP_705784.1| postmeiotic segregation increased 1... 31 7.9
gi|26337001|dbj|BAC32184.1| unnamed protein product [Mus musculus] 31 7.9
>gi|17562798|ref|NP_505934.1| post Meiotic Segregation related
(pms-2) [Caenorhabditis elegans]
gi|7504887|pir||T23068 hypothetical protein H12C20.2b -
Caenorhabditis elegans
gi|3878021|emb|CAA18354.1| Hypothetical protein H12C20.2b
[Caenorhabditis elegans]
Length = 77
Score = 168 bits (426), Expect = 2e-41
Identities = 77/77 (100%), Positives = 77/77 (100%)
Frame = -1
Query: 234 MRNRWRVISKNQYDQNTRVLSFHRRQCSLLFSSVLTPELLKLYFNSTGCCQLVKCNSAVN 55
MRNRWRVISKNQYDQNTRVLSFHRRQCSLLFSSVLTPELLKLYFNSTGCCQLVKCNSAVN
Sbjct: 1 MRNRWRVISKNQYDQNTRVLSFHRRQCSLLFSSVLTPELLKLYFNSTGCCQLVKCNSAVN 60
Query: 54 RQFNRCWFDNYRYPRKE 4
RQFNRCWFDNYRYPRKE
Sbjct: 61 RQFNRCWFDNYRYPRKE 77