Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= H43I07_2
(1101 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|7505021|pir||T34006 hypothetical protein H43I07.2 - Caenorhab... 724 0.0
gi|25155095|ref|NP_504166.2| RNA polymerase (41.2 kD) (5E681) [C... 724 0.0
gi|39588799|emb|CAE58323.1| Hypothetical protein CBG01436 [Caeno... 637 0.0
gi|47937458|gb|AAH72033.1| MGC78824 protein [Xenopus laevis] 303 4e-81
gi|18266895|sp|P52432|RPA5_MOUSE DNA-directed RNA polymerase I 4... 302 8e-81
gi|6677787|ref|NP_033111.1| RNA polymerase 1-1; RNA polymerase 1... 302 8e-81
gi|34874462|ref|XP_217347.2| similar to DNA-directed RNA polymer... 299 7e-80
gi|41056007|ref|NP_956860.1| RNA polymerase 1-1 [Danio rerio] >g... 298 1e-79
gi|49618929|gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Dan... 296 4e-79
gi|50740586|ref|XP_419502.1| PREDICTED: similar to DNA-directed ... 294 3e-78
gi|42560246|ref|NP_976035.1| RNA polymerase I subunit isoform 1;... 292 1e-77
gi|14198113|gb|AAH08118.1| POLR1C protein [Homo sapiens] 292 1e-77
gi|20129237|ref|NP_608885.1| CG3756-PA [Drosophila melanogaster]... 276 5e-73
gi|50258590|gb|EAL21277.1| hypothetical protein CNBD3310 [Crypto... 266 6e-70
gi|31211835|ref|XP_314897.1| ENSANGP00000012965 [Anopheles gambi... 265 1e-69
gi|1914859|emb|CAA71570.1| homologous to 40kD subunit of RNA-pol... 263 5e-69
gi|19113623|ref|NP_596831.1| dna-directed rna polymerases i and ... 263 5e-69
gi|4759046|ref|NP_004866.1| RNA polymerase I subunit isoform 2; ... 261 2e-68
gi|46436522|gb|EAK95883.1| hypothetical protein CaO19.3564 [Cand... 254 2e-66
gi|50418823|ref|XP_457932.1| unnamed protein product [Debaryomyc... 254 2e-66
gi|33086616|gb|AAP92620.1| Ac2-127 [Rattus norvegicus] 254 3e-66
gi|46105474|ref|XP_380541.1| hypothetical protein FG00365.1 [Gib... 244 3e-63
gi|6325367|ref|NP_015435.1| RNA polymerase subunit, common to RN... 243 4e-63
gi|49089950|ref|XP_406552.1| hypothetical protein AN2415.2 [Aspe... 243 6e-63
gi|50285441|ref|XP_445149.1| unnamed protein product [Candida gl... 242 1e-62
gi|45187904|ref|NP_984127.1| ADR031Cp [Eremothecium gossypii] >g... 241 2e-62
gi|50307479|ref|XP_453719.1| unnamed protein product [Kluyveromy... 238 2e-61
gi|32422577|ref|XP_331732.1| hypothetical protein [Neurospora cr... 237 3e-61
gi|38109639|gb|EAA55477.1| hypothetical protein MG09284.4 [Magna... 225 1e-57
gi|50553838|ref|XP_504330.1| hypothetical protein [Yarrowia lipo... 216 6e-55
gi|514322|gb|AAB00528.1| RNA polymerase subunit >gnl|BL_ORD_ID|8... 215 2e-54
gi|21592304|gb|AAM64255.1| RNA polymerase subunit [Arabidopsis t... 214 3e-54
gi|15219820|ref|NP_176282.1| DNA-directed RNA polymerase, putati... 213 8e-54
gi|46226487|gb|EAK87481.1| RNA polymerase III C5 subunit , trans... 196 6e-49
gi|49071628|ref|XP_400103.1| hypothetical protein UM02488.1 [Ust... 194 4e-48
gi|15219773|ref|NP_176261.1| DNA-directed RNA polymerase, putati... 188 2e-46
gi|23508633|ref|NP_701302.1| DNA-directed RNA polymerase I, puta... 174 4e-42
gi|23488700|gb|EAA21377.1| DNA-directed RNA polymerases i and ii... 166 1e-39
gi|19075070|ref|NP_586671.1| DNA-DIRECTED RNA POLYMERASE I [Ence... 165 2e-39
gi|42571933|ref|NP_974057.1| DNA-directed RNA polymerase, putati... 148 2e-34
gi|29247547|gb|EAA39106.1| GLP_305_30255_31307 [Giardia lamblia ... 145 2e-33
gi|47204376|emb|CAG13794.1| unnamed protein product [Tetraodon n... 134 3e-30
gi|6562645|emb|CAB62773.1| RNA polymerase subunit [Leishmania ma... 128 2e-28
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA polymerase... 122 2e-26
gi|15226523|ref|NP_179145.1| DNA-directed RNA polymerase II 36 k... 118 3e-25
gi|15226509|ref|NP_179142.1| DNA-directed RNA polymerase II 36 k... 117 5e-25
gi|21593370|gb|AAM65319.1| DNA-directed RNA polymerase II, third... 115 2e-24
gi|2129725|pir||S71177 DNA-directed RNA polymerase (EC 2.7.7.6) ... 114 4e-24
gi|13812001|ref|NP_113131.1| DNA-directed RNA polymerase 40k cha... 114 4e-24
gi|47682270|gb|AAH70601.1| MGC81245 protein [Xenopus laevis] 110 6e-23
gi|45360897|ref|NP_989124.1| polymerase (RNA) II (DNA directed) ... 107 5e-22
gi|50753469|ref|XP_414001.1| PREDICTED: similar to Polymerase (R... 107 6e-22
gi|45736002|dbj|BAD13030.1| putative RNA polymerase subunit [Ory... 106 8e-22
gi|47221930|emb|CAF98942.1| unnamed protein product [Tetraodon n... 106 8e-22
gi|12837765|dbj|BAB23943.1| unnamed protein product [Mus musculus] 106 8e-22
gi|105877|pir||A36264 DNA-directed RNA polymerase (EC 2.7.7.6) I... 106 1e-21
gi|14702171|ref|NP_116558.1| DNA directed RNA polymerase II poly... 105 2e-21
gi|41053985|ref|NP_956215.1| polymerase (RNA) II (DNA directed) ... 105 2e-21
gi|29336059|ref|NP_033116.2| polymerase (RNA) II (DNA directed) ... 104 3e-21
gi|34851240|ref|XP_341644.1| similar to Polymerase (RNA) II (DNA... 104 3e-21
gi|116575|sp|P16925|CNJC_TETTH Conjugation stage-specific protei... 104 4e-21
gi|17137650|ref|NP_477419.1| CG7885-PA [Drosophila melanogaster]... 102 2e-20
gi|31229547|ref|XP_318245.1| ENSANGP00000017124 [Anopheles gambi... 100 1e-19
gi|13812361|ref|NP_113479.1| DNA-directed RNA polymerase II [Gui... 99 2e-19
gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase, subuni... 98 3e-19
gi|40645083|dbj|BAD06460.1| homologue of DNA-directed RNA polyme... 98 4e-19
gi|39589723|emb|CAE66958.1| Hypothetical protein CBG12350 [Caeno... 97 5e-19
gi|15678067|ref|NP_275181.1| DNA-dependent RNA polymerase, subun... 97 9e-19
gi|2829844|sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II 3... 96 1e-18
gi|46227424|gb|EAK88359.1| RNA polymerase II B3 subunit [Cryptos... 93 1e-17
gi|32414949|ref|XP_327954.1| probable DNA-directed RNA polymeras... 92 3e-17
gi|17505893|ref|NP_492361.1| dna-directed RNA polymerase II poly... 91 6e-17
gi|20094910|ref|NP_614757.1| DNA-directed RNA polymerase alpha s... 89 1e-16
gi|48837924|ref|ZP_00294878.1| COG0202: DNA-directed RNA polymer... 89 2e-16
gi|46109130|ref|XP_381623.1| hypothetical protein FG01447.1 [Gib... 88 4e-16
gi|49097858|ref|XP_410389.1| hypothetical protein AN6252.2 [Aspe... 86 1e-15
gi|23489977|gb|EAA21858.1| conjugation stage-specific protein, p... 86 1e-15
gi|15922388|ref|NP_378057.1| 264aa long hypothetical DNA-directe... 86 2e-15
gi|50290755|ref|XP_447810.1| unnamed protein product [Candida gl... 86 2e-15
gi|21228260|ref|NP_634182.1| DNA-directed RNA polymerase subunit... 85 3e-15
gi|38105162|gb|EAA51620.1| hypothetical protein MG03215.4 [Magna... 85 3e-15
gi|50257891|gb|EAL20592.1| hypothetical protein CNBE5120 [Crypto... 85 3e-15
gi|626066|pir||S43201 DNA-directed RNA polymerase (EC 2.7.7.6) I... 85 3e-15
gi|1834323|dbj|BAA09316.1| RNA polymerase II subunit 3 [Schizosa... 85 3e-15
gi|19075824|ref|NP_588324.1| dna-directed rna polymerase ii subu... 85 3e-15
gi|50307587|ref|XP_453773.1| unnamed protein product [Kluyveromy... 84 6e-15
gi|6322168|ref|NP_012243.1| RNA polymerase II core subunit; Rpb3... 84 6e-15
gi|172213|gb|AAA34889.1| RNA polymerase II (EC 2.7.7.6) 83 1e-14
gi|45187753|ref|NP_983976.1| ADL120Cp [Eremothecium gossypii] >g... 83 1e-14
gi|49074000|ref|XP_401165.1| hypothetical protein UM03550.1 [Ust... 83 1e-14
gi|50555259|ref|XP_505038.1| hypothetical protein [Yarrowia lipo... 83 1e-14
gi|21842208|gb|AAM77734.1| RNA polymerase II subunit Rpb3 [Giard... 82 2e-14
gi|46438170|gb|EAK97505.1| hypothetical protein CaO19.8832 [Cand... 82 3e-14
gi|1834322|dbj|BAA09315.1| RNA polymerase II subunit 3 [Schizosa... 82 3e-14
gi|14520746|ref|NP_126221.1| DNA-directed RNA polymerase, subuni... 81 4e-14
gi|23613748|ref|NP_704769.1| DNA-directed RNA polymerase II, put... 81 4e-14
gi|730612|sp|P39471|RPOD_SULAC DNA-directed RNA polymerase subun... 81 5e-14
gi|14601597|ref|NP_148137.1| DNA-directed RNA polymerase subunit... 80 6e-14
gi|15897038|ref|NP_341643.1| DNA-directed RNA polymerase, subuni... 80 6e-14
gi|46142089|ref|ZP_00147713.2| COG0202: DNA-directed RNA polymer... 77 7e-13
gi|50418977|ref|XP_458009.1| unnamed protein product [Debaryomyc... 76 1e-12
gi|18312091|ref|NP_558758.1| DNA-directed RNA polymerase subunit... 75 2e-12
gi|15668364|ref|NP_247160.1| DNA-directed RNA polymerase, subuni... 75 2e-12
gi|14591408|ref|NP_143488.1| DNA-directed RNA polymerase subunit... 75 4e-12
gi|13124813|sp|O59303|RPOD_PYRHO DNA-directed RNA polymerase sub... 74 6e-12
gi|18978019|ref|NP_579376.1| DNA-directed RNA polymerase subunit... 71 4e-11
gi|1350858|sp|Q00813|RPOD_HALMA DNA-directed RNA polymerase subu... 71 5e-11
gi|19074310|ref|NP_585816.1| DNA-DIRECTED RNA POLYMERASE II THIR... 70 7e-11
gi|45358885|ref|NP_988442.1| DNA-directed RNA polymerase, subuni... 70 9e-11
gi|13124532|sp|Q9V2W1|RPOD_HALSA DNA-directed RNA polymerase sub... 67 7e-10
gi|48097142|ref|XP_393700.1| similar to ENSANGP00000020478 [Apis... 63 1e-08
gi|24584211|ref|NP_723846.1| CG7885-PB [Drosophila melanogaster]... 63 1e-08
gi|25012925|gb|AAN71549.1| RH25219p [Drosophila melanogaster] 63 1e-08
gi|15790216|ref|NP_280040.1| DNA-directed RNA polymerase II; Rpb... 62 2e-08
gi|13541396|ref|NP_111084.1| DNA-directed RNA polymerase, alpha ... 60 7e-08
gi|16082064|ref|NP_394490.1| DNA-dependent RNA polymerase, subun... 59 2e-07
gi|48478294|ref|YP_024000.1| DNA-directed RNA polymerase subunit... 59 2e-07
gi|48851909|ref|ZP_00306103.1| COG0202: DNA-directed RNA polymer... 58 3e-07
gi|38083589|ref|XP_355060.1| similar to Polymerase (RNA) II (DNA... 47 0.001
gi|41615237|ref|NP_963735.1| NEQ452 [Nanoarchaeum equitans Kin4-... 44 0.007
gi|45268991|gb|AAS55908.1| RNA polymerase I subunit hRPA39 [Sus ... 43 0.015
gi|50423637|ref|XP_460403.1| unnamed protein product [Debaryomyc... 38 0.48
gi|41581216|emb|CAE47865.1| cytochrome p450, putative [Aspergill... 35 2.4
gi|29247546|gb|EAA39105.1| GLP_305_30749_30180 [Giardia lamblia ... 35 3.1
gi|14249452|ref|NP_116175.1| hypothetical protein FLJ14451 [Homo... 34 5.3
gi|11125723|ref|NP_068549.1| replicase [Botrytis virus F] >gnl|B... 28 5.5
gi|19527226|ref|NP_598764.1| expressed sequence AI790326 [Mus mu... 34 6.9
gi|1665743|dbj|BAA11835.1| bone morphogenic protein a [Halocynth... 34 6.9
gi|11464866|gb|AAG35358.1| cruzipain [Trypanosoma cruzi] 33 9.0
>gi|7505021|pir||T34006 hypothetical protein H43I07.2 - Caenorhabditis
elegans
Length = 697
Score = 724 bits (1870), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Frame = +1
Query: 1 MVKKAAATSKQATYHSDEIEMKEEVVLNTYDECTDYVEYDDTKQFDINEYCDQIQVAMVN 180
MVKKAAATSKQATYHSDEIEMKEEVVLNTYDECTDYVEYDDTKQFDINEYCDQIQVAMVN
Sbjct: 332 MVKKAAATSKQATYHSDEIEMKEEVVLNTYDECTDYVEYDDTKQFDINEYCDQIQVAMVN 391
Query: 181 ESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLL 360
ESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLL
Sbjct: 392 ESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLL 451
Query: 361 PLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPK 540
PLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPK
Sbjct: 452 PLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPK 511
Query: 541 QLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIG 720
QLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIG
Sbjct: 512 QLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIG 571
Query: 721 RDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDAR 900
RDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDAR
Sbjct: 572 RDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDAR 631
Query: 901 KDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCRSLRKQ 1080
KDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCRSLRKQ
Sbjct: 632 KDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCRSLRKQ 691
Query: 1081 IEALIQ 1098
IEALIQ
Sbjct: 692 IEALIQ 697
>gi|25155095|ref|NP_504166.2| RNA polymerase (41.2 kD) (5E681)
[Caenorhabditis elegans]
gi|17402835|gb|AAL38961.1| Hypothetical protein H43I07.2
[Caenorhabditis elegans]
Length = 366
Score = 724 bits (1870), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Frame = +1
Query: 1 MVKKAAATSKQATYHSDEIEMKEEVVLNTYDECTDYVEYDDTKQFDINEYCDQIQVAMVN 180
MVKKAAATSKQATYHSDEIEMKEEVVLNTYDECTDYVEYDDTKQFDINEYCDQIQVAMVN
Sbjct: 1 MVKKAAATSKQATYHSDEIEMKEEVVLNTYDECTDYVEYDDTKQFDINEYCDQIQVAMVN 60
Query: 181 ESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLL 360
ESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLL
Sbjct: 61 ESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLL 120
Query: 361 PLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPK 540
PLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPK
Sbjct: 121 PLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPK 180
Query: 541 QLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIG 720
QLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIG
Sbjct: 181 QLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIG 240
Query: 721 RDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDAR 900
RDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDAR
Sbjct: 241 RDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDAR 300
Query: 901 KDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCRSLRKQ 1080
KDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCRSLRKQ
Sbjct: 301 KDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCRSLRKQ 360
Query: 1081 IEALIQ 1098
IEALIQ
Sbjct: 361 IEALIQ 366
>gi|39588799|emb|CAE58323.1| Hypothetical protein CBG01436
[Caenorhabditis briggsae]
Length = 367
Score = 637 bits (1644), Expect = 0.0
Identities = 323/366 (88%), Positives = 343/366 (93%), Gaps = 1/366 (0%)
Frame = +1
Query: 1 MVKKAAAT-SKQATYHSDEIEMKEEVVLNTYDECTDYVEYDDTKQFDINEYCDQIQVAMV 177
MVKK+AA+ K A + SDEI M+EEVVLNTYDECTDYVEYDDTK+F I +YC QI+VAMV
Sbjct: 1 MVKKSAASVPKAAEFPSDEIVMQEEVVLNTYDECTDYVEYDDTKEFSIVDYCSQIKVAMV 60
Query: 178 NESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGL 357
NES D MTLEFDITRIEAPIANALRR+LIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGL
Sbjct: 61 NESTDKMTLEFDITRIEAPIANALRRILIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGL 120
Query: 358 LPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDP 537
LPLRVDPRGFQFP EKVVGINEKGVDC+EEP GDPA++LIFKINV+CTKNRNAVPTATDP
Sbjct: 121 LPLRVDPRGFQFPTEKVVGINEKGVDCEEEPTGDPARHLIFKINVTCTKNRNAVPTATDP 180
Query: 538 KQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGI 717
KQLYHNSSVYSRAFEWVPI Q + ++ P+MVSDDILVAKLRPGQEIEASCHAVKGI
Sbjct: 181 KQLYHNSSVYSRAFEWVPIGKQSGNYDKKNVPKMVSDDILVAKLRPGQEIEASCHAVKGI 240
Query: 718 GRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDA 897
GRDHAKFSPVATASYRLLPTIRLNAEISGEAAERL+SVFSEGVI IEKKGAKRIAVVKDA
Sbjct: 241 GRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLQSVFSEGVIGIEKKGAKRIAVVKDA 300
Query: 898 RKDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCRSLRK 1077
RKDTCSRNVFRHEDL+KVVQLGKNKQHFIFSVESTGALKS+ELVVEACKVME KCRSLRK
Sbjct: 301 RKDTCSRNVFRHEDLAKVVQLGKNKQHFIFSVESTGALKSAELVVEACKVMETKCRSLRK 360
Query: 1078 QIEALI 1095
QIEAL+
Sbjct: 361 QIEALL 366