Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= K07B1_6
(105 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17562288|ref|NP_505416.1| putative protein (5J820) [Caenorhab... 67 2e-10
>gi|17562288|ref|NP_505416.1| putative protein (5J820)
[Caenorhabditis elegans]
gi|15145368|gb|AAK84539.1| Hypothetical protein K07B1.8
[Caenorhabditis elegans]
Length = 34
Score = 66.6 bits (161), Expect = 2e-10
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = -1
Query: 105 MSLARKEDASVARAIIRIVCDAVSFLKFRFLGVV 4
MSLARKEDASVARAIIRIVCDAVSFLKFRFLGVV
Sbjct: 1 MSLARKEDASVARAIIRIVCDAVSFLKFRFLGVV 34
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.313 0.124 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,789,762
Number of Sequences: 1967186
Number of extensions: 859208
Number of successful extensions: 1441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 661,712,633
effective HSP length: 10
effective length of database: 642,040,773
effective search space used: 15408978552
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)