Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= K08A2_4
(1221 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|32563886|ref|NP_494413.2| nuclear Hormone Receptor (64.1 kD) ... 620 e-176
gi|10198089|gb|AAG15179.1| nuclear receptor NHR-88 [Caenorhabdit... 620 e-176
gi|39584684|emb|CAE72437.1| Hypothetical protein CBG19604 [Caeno... 480 e-134
gi|39595072|emb|CAE70940.1| Hypothetical protein CBG17744 [Caeno... 141 3e-32
gi|10197985|gb|AAG15127.1| nuclear receptor NHR-31 [Caenorhabdit... 134 3e-30
gi|10197987|gb|AAG15128.1| nuclear receptor NHR-31 [Caenorhabdit... 134 3e-30
gi|25152753|ref|NP_741456.1| nuclear Hormone Receptor (65.5 kD) ... 134 3e-30
gi|10197983|gb|AAG15126.1| nuclear receptor NHR-31 [Caenorhabdit... 134 3e-30
gi|39588163|emb|CAE68087.1| Hypothetical protein CBG13722 [Caeno... 101 4e-20
gi|17541660|ref|NP_502856.1| nuclear Hormone Receptor (nhr-5) [C... 96 2e-18
gi|39584675|emb|CAE72428.1| Hypothetical protein CBG19594 [Caeno... 93 1e-17
gi|17535075|ref|NP_494368.1| nuclear Hormone Receptor (nhr-119) ... 89 2e-16
gi|3608380|gb|AAC72724.1| nuclear transcription factor 4 homolog... 79 2e-13
gi|3608382|gb|AAC72725.1| nuclear transcription factor 4 homolog... 79 2e-13
gi|3608378|gb|AAC72723.1| nuclear transcription factor 4 homolog... 79 2e-13
gi|24582907|ref|NP_476887.2| CG9310-PA [Drosophila melanogaster]... 79 3e-13
gi|25012937|gb|AAN71555.1| RH29074p [Drosophila melanogaster] 79 3e-13
gi|24582911|ref|NP_723414.1| CG9310-PC [Drosophila melanogaster]... 79 3e-13
gi|480042|pir||S36218 hepatocyte nuclear factor 4 - fruit fly (D... 79 3e-13
gi|24582909|ref|NP_723413.1| CG9310-PB [Drosophila melanogaster]... 79 3e-13
gi|17508459|ref|NP_492613.1| nuclear Hormone Receptor (52.4 kD) ... 75 2e-12
gi|10198018|gb|AAG15143.1| nuclear receptor NHR-49 [Caenorhabdit... 75 2e-12
gi|39595230|emb|CAE60267.1| Hypothetical protein CBG03844 [Caeno... 75 4e-12
gi|7498619|pir||T25687 hypothetical protein F08D12.14 - Caenorha... 75 4e-12
gi|39595232|emb|CAE60269.1| Hypothetical protein CBG03848 [Caeno... 73 1e-11
gi|39598319|emb|CAE69012.1| Hypothetical protein CBG15006 [Caeno... 73 1e-11
gi|17508457|ref|NP_492612.1| nuclear Hormone Receptor (52.5 kD) ... 73 2e-11
gi|32563637|ref|NP_871799.1| nuclear Hormone Receptor (nhr-49) [... 73 2e-11
gi|10198014|gb|AAG15141.1| nuclear receptor NHR-49 [Caenorhabdit... 73 2e-11
gi|10198012|gb|AAG15140.1| nuclear receptor NHR-49 [Caenorhabdit... 73 2e-11
gi|32563635|ref|NP_871798.1| nuclear Hormone Receptor (55.4 kD) ... 73 2e-11
gi|32563633|ref|NP_492615.2| nuclear Hormone Receptor (nhr-69) [... 70 8e-11
gi|25152775|ref|NP_501738.2| nuclear Hormone Receptor (49.0 kD) ... 69 2e-10
gi|2734850|gb|AAB93762.1| hepatocyte nuclear factor 4 isoform a 69 2e-10
gi|7504977|pir||T23126 hypothetical protein H27C11.1 - Caenorhab... 69 2e-10
gi|2734852|gb|AAB93763.1| hepatocyte nuclear factor 4 isoform b 69 2e-10
gi|50731740|ref|XP_425924.1| PREDICTED: similar to hepatocyte nu... 67 7e-10
gi|45430043|ref|NP_991380.1| hepatocyte nuclear factor 4gamma [B... 67 9e-10
gi|7446194|pir||JC6095 hepatocyte nuclear factor 4 gamma chain -... 66 1e-09
gi|7508351|pir||T25211 hypothetical protein T23H4.2 - Caenorhabd... 66 1e-09
gi|13274556|gb|AAK17977.1| nuclear receptor NHR-49 [Caenorhabdit... 66 1e-09
gi|5834598|emb|CAA89990.2| hepatocyte nuclear factor 4 gamma (HN... 66 1e-09
gi|40254475|ref|NP_004124.3| hepatocyte nuclear factor 4, gamma ... 66 1e-09
gi|10720045|sp|Q9WUU6|HN4G_MOUSE Hepatocyte nuclear factor 4-gam... 66 2e-09
gi|49457135|emb|CAG46888.1| HNF4G [Homo sapiens] 66 2e-09
gi|7305147|ref|NP_038948.1| hepatocyte nuclear factor 4, gamma [... 66 2e-09
gi|12644415|sp|Q14541|HN4G_HUMAN Hepatocyte nuclear factor 4-gam... 65 3e-09
gi|50758697|ref|XP_417376.1| PREDICTED: similar to hepatocyte nu... 65 3e-09
gi|34855527|ref|XP_345189.1| similar to hepatocyte nuclear facto... 65 4e-09
gi|27573799|pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A... 64 6e-09
gi|6016234|sp|P79926|HN4B_XENLA Hepatocyte nuclear factor 4-beta... 62 2e-08
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos... 62 3e-08
gi|27503338|gb|AAH42224.1| Hnf4-prov protein [Xenopus laevis] 62 3e-08
gi|39596578|emb|CAE63197.1| Hypothetical protein CBG07552 [Caeno... 62 4e-08
gi|6016233|sp|Q91766|HN4A_XENLA Hepatocyte nuclear factor 4-alph... 62 4e-08
gi|33357317|pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With... 61 6e-08
gi|34194038|gb|AAH56550.1| Hnf4a protein [Danio rerio] 61 6e-08
gi|112415|pir||A36471 transcription factor HNF-4 - rat >gnl|BL_O... 61 6e-08
gi|227511|prf||1705219A hepatocyte nuclear factor 4 61 6e-08
gi|35902797|ref|NP_919349.1| hepatocyte nuclear factor 4, alpha ... 61 6e-08
gi|9453875|dbj|BAB03286.1| hepatocyte nuclear factor 4 [Tamias s... 60 1e-07
gi|49258498|pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd I... 59 2e-07
gi|6166208|sp|P41235|HN4A_HUMAN Hepatocyte nuclear factor 4-alph... 59 2e-07
gi|2135341|pir||JC4937 hepatocyte nuclear factor 4, splice form ... 59 2e-07
gi|575253|emb|CAA54248.1| hepatocyte nuclear factor 4 [Homo sapi... 59 2e-07
gi|31077209|ref|NP_849181.1| hepatocyte nuclear factor 4 alpha i... 59 2e-07
gi|1595752|emb|CAA61133.1| Hepatocyte nuclear factor 4A [Homo sa... 59 2e-07
gi|7446193|pir||JC6096 hepatocyte nuclear factor 4 alpha2 chain ... 59 2e-07
gi|31077205|ref|NP_000448.3| hepatocyte nuclear factor 4 alpha i... 59 2e-07
gi|2135342|pir||JC4938 hepatocyte nuclear factor 4C - human >gnl... 59 2e-07
gi|31077207|ref|NP_849180.1| hepatocyte nuclear factor 4 alpha i... 59 2e-07
gi|1843522|gb|AAB48082.1| hepatocyte nuclear factor 4-alpha [Hom... 59 2e-07
gi|11559939|ref|NP_071516.1| hepatocyte nuclear factor 4 alpha; ... 59 3e-07
gi|1346306|sp|P49698|HN4A_MOUSE Hepatocyte nuclear factor 4-alph... 59 3e-07
gi|47229086|emb|CAG03838.1| unnamed protein product [Tetraodon n... 59 3e-07
gi|46575916|ref|NP_032287.2| hepatic nuclear factor 4; HNF4 alph... 59 3e-07
gi|47223458|emb|CAF97945.1| unnamed protein product [Tetraodon n... 57 9e-07
gi|39595537|emb|CAE60575.1| Hypothetical protein CBG04204 [Caeno... 56 2e-06
gi|50753926|ref|XP_414182.1| PREDICTED: similar to hepatocyte nu... 56 2e-06
gi|17568425|ref|NP_510423.1| nuclear Hormone Receptor (51.3 kD) ... 55 3e-06
gi|39583834|emb|CAE74907.1| Hypothetical protein CBG22776 [Caeno... 55 3e-06
gi|28396028|gb|AAO39177.1| nuclear receptor NHR-64 [Caenorhabdit... 55 3e-06
gi|28396030|gb|AAO39178.1| nuclear receptor NHR-64 [Caenorhabdit... 55 3e-06
gi|17508463|ref|NP_491103.1| nuclear Hormone Receptor (nhr-64) [... 55 3e-06
gi|47270772|gb|AAT27251.1| Nuclear hormone receptor family prote... 55 3e-06
gi|28396026|gb|AAO39176.1| nuclear receptor NHR-64 [Caenorhabdit... 55 3e-06
gi|25150309|ref|NP_741861.1| nuclear Hormone Receptor (nhr-14) [... 52 4e-05
gi|44888978|sp|O02151|NH14_CAEEL Nuclear hormone receptor family... 52 4e-05
gi|25513780|pir||H89591 protein T01B10.4 [imported] - Caenorhabd... 52 4e-05
gi|30025114|gb|AAP13776.1| Nuclear hormone receptor family prote... 52 4e-05
gi|25150304|ref|NP_741860.1| nuclear Hormone Receptor (nhr-14) [... 52 4e-05
gi|13699898|gb|AAC32789.2| retinoid X receptor homolog [Celuca p... 50 8e-05
gi|11359796|pir||T43353 nuclear receptor NHR-14 - Caenorhabditis... 50 1e-04
gi|25148054|ref|NP_741463.1| nuclear Hormone Receptor (nhr-66) [... 47 7e-04
gi|25148061|ref|NP_741462.1| nuclear Hormone Receptor (nhr-66) [... 47 7e-04
gi|10198069|gb|AAG15169.1| nuclear receptor NHR-66 [Caenorhabdit... 47 7e-04
gi|7507499|pir||T33028 hypothetical protein T09A12.4 - Caenorhab... 47 7e-04
gi|25148057|ref|NP_741464.1| nuclear Hormone Receptor (nhr-66) [... 47 7e-04
gi|10198067|gb|AAG15168.1| nuclear receptor NHR-66 [Caenorhabdit... 47 7e-04
gi|285012|pir||S26670 retinoic acid receptor X-gamma - mouse >gn... 46 0.002
gi|2135648|pir||I38104 MHC class I promoter binding protein - hu... 46 0.002
gi|4322668|gb|AAD16119.1| retinoic acid receptor RXR [Schistosom... 46 0.002
gi|6677829|ref|NP_033133.1| retinoid X receptor gamma [Mus muscu... 45 0.003
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2; mR... 45 0.003
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus] 45 0.003
gi|32451843|gb|AAH54649.1| Rxrb protein [Danio rerio] 45 0.003
gi|24308520|ref|NP_571350.1| retinoid x receptor, beta; retinoid... 45 0.003
gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa] 45 0.005
gi|5902068|ref|NP_008848.1| retinoid X receptor, gamma [Homo sap... 44 0.006
gi|34880904|ref|XP_341152.1| retinoid X receptor gamma [Rattus n... 44 0.006
gi|45384256|ref|NP_990625.1| retinoic acid receptor [Gallus gall... 44 0.006
gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralicht... 44 0.006
gi|8478106|sp|Q90416|RXRA_BRARE RETINOIC ACID RECEPTOR RXR-ALPHA... 44 0.006
gi|41282088|ref|NP_571292.2| retinoid x receptor, alpha; retinoi... 44 0.006
gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rat... 44 0.008
gi|39587500|emb|CAE58438.1| Hypothetical protein CBG01574 [Caeno... 44 0.010
gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma america... 44 0.010
gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis nil... 43 0.013
gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralicht... 43 0.013
gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus l... 43 0.013
gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu r... 43 0.017
gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon n... 43 0.017
gi|48475404|gb|AAT44330.1| USP [Plodia interpunctella] 43 0.017
gi|1710810|sp|P51129|RXRG_XENLA RETINOIC ACID RECEPTOR RXR-GAMMA... 42 0.022
gi|50539758|ref|NP_001002345.1| zgc:92183 [Danio rerio] >gnl|BL_... 42 0.029
gi|6601567|gb|AAF19033.1| ultraspiracle [Aedes albopictus] 42 0.029
gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmu... 42 0.029
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis] 42 0.029
gi|28628004|gb|AAO18150.1| USP-RXR [Periplaneta americana] 42 0.029
gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein [Xenopus laevis] 42 0.029
gi|2895868|gb|AAC03056.1| ultraspiracle [Chironomus tentans] 42 0.029
gi|47940249|gb|AAH72132.1| RXR<beta> protein [Xenopus laevis] 42 0.038
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata] 42 0.038
gi|18859345|ref|NP_571228.1| retinoid x receptor, gamma; etID309... 41 0.050
gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Mustela vison] 41 0.050
gi|27529063|emb|CAD57002.1| retinoid X receptor [Suberites domun... 41 0.050
gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma 41 0.050
gi|337720|gb|AAA60293.1| retinoid X receptor beta 41 0.050
gi|11415052|ref|NP_068811.1| retinoid X receptor, beta; MHC clas... 41 0.050
gi|49259353|pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa... 41 0.050
gi|542994|pir||S37781 retinoid X receptor beta - human 41 0.050
gi|18202151|sp|O76202|USP_CHOFU Ultraspiracle protein homolog >g... 41 0.065
gi|17540852|ref|NP_501716.1| nuclear Hormone Receptor (nhr-34) [... 40 0.085
gi|109944|pir||A34418 H-2 region II binding protein - mouse (fra... 40 0.085
gi|13489062|ref|NP_035436.1| retinoid X receptor beta [Mus muscu... 40 0.085
gi|10197989|gb|AAG15129.1| nuclear receptor NHR-34 [Caenorhabdit... 40 0.085
gi|34852205|ref|XP_342096.1| similar to Retinoic acid receptor R... 40 0.085
gi|34555806|emb|CAC70099.2| Hypothetical protein F58G6.5b [Caeno... 40 0.085
gi|483195|pir||D41727 retinoid X receptor beta - mouse 40 0.085
gi|285011|pir||S26669 retinoic acid receptor X-beta - mouse >gnl... 40 0.085
gi|25153807|ref|NP_741480.1| nuclear Hormone Receptor (nhr-34) [... 40 0.085
gi|1710720|sp|P49743|RXRB_RAT Retinoic acid receptor RXR-beta (N... 40 0.085
gi|112259|pir||A41651 retinoic acid receptor coregulator - rat >... 40 0.085
gi|34555807|emb|CAE46673.1| Hypothetical protein F58G6.5c [Caeno... 40 0.085
gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus nor... 40 0.085
gi|20302776|gb|AAM18897.1| unknown [Branchiostoma floridae] 40 0.11
gi|4337458|gb|AAD18132.1| retinoid X receptor beta [Sus scrofa d... 40 0.11
gi|1345734|sp|P49700|USP_BOMMO Ultraspiracle protein homolog (RX... 40 0.11
gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus] 40 0.11
gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retin... 40 0.11
gi|21310111|gb|AAM46151.1| nuclear hormone receptor RXR [Branchi... 40 0.11
gi|1718061|sp|P54779|USP_MANSE Ultraspiracle protein homolog >gn... 40 0.15
gi|1085220|pir||S47633 RXR protein - African clawed frog >gnl|BL... 39 0.19
gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus] 39 0.19
gi|27372315|dbj|BAC53670.1| ultraspiracle [Chilo suppressalis] 39 0.19
gi|50416274|gb|AAH78057.1| Unknown (protein for MGC:82853) [Xeno... 39 0.25
gi|6755384|ref|NP_035435.1| retinoid X receptor alpha; RXR alpha... 39 0.32
gi|6981496|ref|NP_036937.1| retinoid X receptor alpha [Rattus no... 39 0.32
gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pF... 39 0.32
gi|1943526|pdb|1LBD| Ligand-Binding Domain Of The Human Nuclear... 39 0.32
gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus] >gnl|BL_ORD... 39 0.32
gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human R... 39 0.32
gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rx... 39 0.32
gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crys... 39 0.32
gi|4506755|ref|NP_002948.1| retinoid X receptor, alpha [Homo sap... 39 0.32
gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning ve... 39 0.32
gi|18157523|dbj|BAB83838.1| partially supported by GENSCAN and G... 39 0.32
gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens] 39 0.32
gi|10946383|gb|AAG24886.1| ultraspiracle isoform-A [Aedes aegypti] 38 0.42
gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodime... 38 0.42
gi|39590178|emb|CAE61176.1| Hypothetical protein CBG04944 [Caeno... 38 0.42
gi|10946385|gb|AAG24887.1| ultraspiracle isoform-B [Aedes aegypti] 38 0.42
gi|1710719|sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha 38 0.55
gi|39592998|emb|CAE62612.1| Hypothetical protein CBG06731 [Caeno... 37 0.72
gi|14278415|pdb|1G2N|A Chain A, Crystal Structure Of The Ligand ... 37 0.72
gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius ... 37 0.72
gi|39654795|pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-... 37 0.72
gi|283824|pir||C41977 retinoid receptor alpha - African clawed frog 36 1.6
gi|39582376|emb|CAE74760.1| Hypothetical protein CBG22587 [Caeno... 36 1.6
gi|7504684|pir||T22948 hypothetical protein F58G6.5 - Caenorhabd... 36 2.1
gi|48096039|ref|XP_392385.1| similar to CG7404-PA [Apis mellifera] 36 2.1
gi|24210302|emb|CAD54660.1| SI:dZ12F11.1 (retinoid x receptor, e... 35 2.7
gi|18859343|ref|NP_571313.1| retinoid x receptor, delta; retinoi... 35 2.7
gi|39588717|emb|CAE58241.1| Hypothetical protein CBG01341 [Caeno... 35 3.6
gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma america... 35 3.6
gi|50307481|ref|XP_453720.1| unnamed protein product [Kluyveromy... 34 8.0
gi|14624971|gb|AAG01569.1| ultraspiracle protein [Lucilia cuprina] 34 8.0
gi|47222918|emb|CAF99074.1| unnamed protein product [Tetraodon n... 34 8.0
>gi|32563886|ref|NP_494413.2| nuclear Hormone Receptor (64.1 kD)
(nhr-88C) [Caenorhabditis elegans]
gi|27669075|gb|AAF39914.2| Nuclear hormone receptor family protein
88, isoform a [Caenorhabditis elegans]
Length = 593
Score = 620 bits (1600), Expect = e-176
Identities = 324/387 (83%), Positives = 324/387 (83%)
Frame = +1
Query: 58 ITYAVGRTASVEQLIAALRRYVLSAVHWIDALFNLAHLTEIHDKTTLLKSVIGPFTIFNI 237
ITYAVGRTASVEQLIAALRRYVLSAVHWIDALFNLAHLTEIHDKTTLLKSVIGPFTIFNI
Sbjct: 207 ITYAVGRTASVEQLIAALRRYVLSAVHWIDALFNLAHLTEIHDKTTLLKSVIGPFTIFNI 266
Query: 238 AARTAQISDGDLICLCNKSTINRQPARHLLDTNLVGNNFVGRVIDDLVFPTKKLALTNPE 417
AARTAQISDGDLICLCNKSTINRQPARHLLDTNLVGNNFVGRVIDDLVFPTKKLALTNPE
Sbjct: 267 AARTAQISDGDLICLCNKSTINRQPARHLLDTNLVGNNFVGRVIDDLVFPTKKLALTNPE 326
Query: 418 ITILSALIILDPDARGLSQETSQALLGIRDRVQNALFNLIRDNSNNMTSVTSRFGNXXXX 597
ITILSALIILDPDARGLSQETSQALLGIRDRVQNALFNLIRDNSNNMTSVTSRFGN
Sbjct: 327 ITILSALIILDPDARGLSQETSQALLGIRDRVQNALFNLIRDNSNNMTSVTSRFGNLLLL 386
Query: 598 XXXXXXXXXXIGENVQLAKMFGIPIDSLLVELYVDADSPELISQGSHARERSDVSTQTAS 777
IGENVQLAKMFGIPIDSLLVELYVDADSPELISQGSHARERSDVSTQTAS
Sbjct: 387 FPPLAKLSSLIGENVQLAKMFGIPIDSLLVELYVDADSPELISQGSHARERSDVSTQTAS 446
Query: 778 LEGASASMTPDVTSSEFVKMEQNXXXXXXXXXMCIGAPATSSANAVATNLAADLLGLLPN 957
LEGASASMTPDVTSSEFVKMEQN MCIGAPATSSANAVATNLAADLLGLLPN
Sbjct: 447 LEGASASMTPDVTSSEFVKMEQNESPSSSEEPMCIGAPATSSANAVATNLAADLLGLLPN 506
Query: 958 FXXXXXXXXXXXXXXXXXVNYSHFYXXXXXXXXXXXXXXXXXXXXXXXAPHSAPPISNNV 1137
F VNYSHFY APHSAPPISNNV
Sbjct: 507 FDATGLDLASAAAAAATSVNYSHFYGFGNLGGSLDDSSSSGTGSVGSFAPHSAPPISNNV 566
Query: 1138 NPFAVHGFFDNSAPNTGVVHNQPFRFV 1218
NPFAVHGFFDNSAPNTGVVHNQPFRFV
Sbjct: 567 NPFAVHGFFDNSAPNTGVVHNQPFRFV 593
>gi|10198089|gb|AAG15179.1| nuclear receptor NHR-88 [Caenorhabditis
elegans]
Length = 598
Score = 620 bits (1600), Expect = e-176
Identities = 324/387 (83%), Positives = 324/387 (83%)
Frame = +1
Query: 58 ITYAVGRTASVEQLIAALRRYVLSAVHWIDALFNLAHLTEIHDKTTLLKSVIGPFTIFNI 237
ITYAVGRTASVEQLIAALRRYVLSAVHWIDALFNLAHLTEIHDKTTLLKSVIGPFTIFNI
Sbjct: 212 ITYAVGRTASVEQLIAALRRYVLSAVHWIDALFNLAHLTEIHDKTTLLKSVIGPFTIFNI 271
Query: 238 AARTAQISDGDLICLCNKSTINRQPARHLLDTNLVGNNFVGRVIDDLVFPTKKLALTNPE 417
AARTAQISDGDLICLCNKSTINRQPARHLLDTNLVGNNFVGRVIDDLVFPTKKLALTNPE
Sbjct: 272 AARTAQISDGDLICLCNKSTINRQPARHLLDTNLVGNNFVGRVIDDLVFPTKKLALTNPE 331
Query: 418 ITILSALIILDPDARGLSQETSQALLGIRDRVQNALFNLIRDNSNNMTSVTSRFGNXXXX 597
ITILSALIILDPDARGLSQETSQALLGIRDRVQNALFNLIRDNSNNMTSVTSRFGN
Sbjct: 332 ITILSALIILDPDARGLSQETSQALLGIRDRVQNALFNLIRDNSNNMTSVTSRFGNLLLL 391
Query: 598 XXXXXXXXXXIGENVQLAKMFGIPIDSLLVELYVDADSPELISQGSHARERSDVSTQTAS 777
IGENVQLAKMFGIPIDSLLVELYVDADSPELISQGSHARERSDVSTQTAS
Sbjct: 392 FPPLAKLSSLIGENVQLAKMFGIPIDSLLVELYVDADSPELISQGSHARERSDVSTQTAS 451
Query: 778 LEGASASMTPDVTSSEFVKMEQNXXXXXXXXXMCIGAPATSSANAVATNLAADLLGLLPN 957
LEGASASMTPDVTSSEFVKMEQN MCIGAPATSSANAVATNLAADLLGLLPN
Sbjct: 452 LEGASASMTPDVTSSEFVKMEQNESPSSSEEPMCIGAPATSSANAVATNLAADLLGLLPN 511
Query: 958 FXXXXXXXXXXXXXXXXXVNYSHFYXXXXXXXXXXXXXXXXXXXXXXXAPHSAPPISNNV 1137
F VNYSHFY APHSAPPISNNV
Sbjct: 512 FDATGLDLASAAAAAATSVNYSHFYGFGNLGGSLDDSSSSGTGSVGSFAPHSAPPISNNV 571
Query: 1138 NPFAVHGFFDNSAPNTGVVHNQPFRFV 1218
NPFAVHGFFDNSAPNTGVVHNQPFRFV
Sbjct: 572 NPFAVHGFFDNSAPNTGVVHNQPFRFV 598