Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= R06F6_1
(1104 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|25151998|ref|NP_496320.2| histone stem-loop binding protein, ... 615 e-175
gi|1353156|sp|Q09599|SLBP_CAEEL Histone RNA hairpin-binding prot... 615 e-175
gi|39597377|emb|CAE59605.1| Hypothetical protein CBG03013 [Caeno... 508 e-142
gi|5729862|ref|NP_006518.1| histone stem-loop binding protein; h... 84 6e-15
gi|6677987|ref|NP_033219.1| stem-loop binding protein [Mus muscu... 82 2e-14
gi|50747336|ref|XP_420843.1| PREDICTED: similar to Slbp protein ... 81 4e-14
gi|50747338|ref|XP_420844.1| PREDICTED: similar to histone stem-... 81 4e-14
gi|9789803|sp|Q9YGP6|SLB2_XENLA Oocyte-specific histone RNA stem... 80 8e-14
gi|38075549|ref|XP_122655.2| similar to histone stem-loop bindin... 79 1e-13
gi|20987196|gb|AAH29631.1| Slbp protein [Mus musculus] 78 4e-13
gi|34878686|ref|XP_226070.2| similar to putative nuclear protein... 75 4e-12
gi|33416889|gb|AAH55585.1| Slbp protein [Danio rerio] 74 8e-12
gi|40549389|gb|AAR87749.1| stem-loop binding protein [Lytechinus... 73 1e-11
gi|47551297|ref|NP_999831.1| stem-loop binding protein [Strongyl... 71 5e-11
gi|49522027|gb|AAH74636.1| Unknown (protein for MGC:69307) [Xeno... 70 7e-11
gi|17137748|ref|NP_477480.1| CG11886-PA [Drosophila melanogaster... 69 2e-10
gi|10334683|gb|AAG16723.1| histone mRNA stem-loop binding protei... 69 2e-10
gi|9789782|sp|P79943|SLBP_XENLA Histone RNA hairpin-binding prot... 69 2e-10
gi|47221334|emb|CAF97252.1| unnamed protein product [Tetraodon n... 68 3e-10
gi|49118473|gb|AAH73461.1| Unknown (protein for MGC:80972) [Xeno... 68 4e-10
gi|31208099|ref|XP_313016.1| ENSANGP00000011655 [Anopheles gambi... 67 6e-10
gi|31208101|ref|XP_313017.1| ENSANGP00000011730 [Anopheles gambi... 67 7e-10
gi|31208103|ref|XP_313018.1| ENSANGP00000023192 [Anopheles gambi... 67 7e-10
gi|42733684|gb|AAS38628.1| hypothetical protein [Dictyostelium d... 59 2e-07
gi|48869185|gb|AAT47181.1| histone stem loop binding protein [Bo... 46 0.001
gi|46229808|gb|EAK90626.1| SLBP family of RNA binding proteins [... 41 0.043
gi|46229508|gb|EAK90326.1| SLBP family of RNA binding proteins [... 39 0.16
gi|23613213|ref|NP_703535.1| hypothetical protein [Plasmodium fa... 39 0.22
gi|23482149|gb|EAA18214.1| hypothetical protein [Plasmodium yoel... 39 0.22
gi|38103348|gb|EAA50051.1| hypothetical protein MG03810.4 [Magna... 36 1.8
gi|50288371|ref|XP_446614.1| unnamed protein product [Candida gl... 35 3.1
gi|32469886|ref|NP_863058.1| putative resolvase [Pseudomonas put... 34 5.3
gi|29247279|gb|EAA38847.1| GLP_577_38920_45159 [Giardia lamblia ... 34 6.9
gi|33239534|ref|NP_874476.1| Dipeptidyl aminopeptidase family en... 34 6.9
gi|46443495|gb|EAL02776.1| hypothetical protein CaO19.9183 [Cand... 34 6.9
gi|32398739|emb|CAD98699.1| replication-associated histone mRNA ... 34 6.9
>gi|25151998|ref|NP_496320.2| histone stem-loop binding protein, Cell
Death Lethal CDL-1 (43.1 kD) (cdl-1) [Caenorhabditis
elegans]
Length = 382
Score = 615 bits (1586), Expect = e-175
Identities = 309/367 (84%), Positives = 309/367 (84%)
Frame = +1
Query: 1 MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELAXX 180
MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELA
Sbjct: 16 MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELASR 75
Query: 181 XXXXXXXXXXXXXKGQPKRAQNSQNKPKFVRSLELTNEVFXXXXXXXXXXXXXXXXNGDT 360
KGQPKRAQNSQNKPKFVRSLELTNEVF NGDT
Sbjct: 76 LEEERRCKSESRRKGQPKRAQNSQNKPKFVRSLELTNEVFQSTSSRRSQRSKSRTRNGDT 135
Query: 361 IXXXXXXXXXXXXXXXXGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN 540
I GPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN
Sbjct: 136 ITTVEEHTETVVMESSSGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN 195
Query: 541 GGXXXXXXXXXXXRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR 720
GG RRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR
Sbjct: 196 GGSDSSSVASSPSRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR 255
Query: 721 IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD 900
IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD
Sbjct: 256 IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD 315
Query: 901 NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD 1080
NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD
Sbjct: 316 NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD 375
Query: 1081 FSKMSSH 1101
FSKMSSH
Sbjct: 376 FSKMSSH 382
>gi|1353156|sp|Q09599|SLBP_CAEEL Histone RNA hairpin-binding protein
(Histone stem-loop binding protein)
gi|7506364|pir||T23983 hypothetical protein R06F6.1 - Caenorhabditis
elegans
gi|1752650|emb|CAA71200.1| histone RNA hairpin-binding protein
[Caenorhabditis elegans]
gi|3878908|emb|CAA86782.1| Hypothetical protein R06F6.1
[Caenorhabditis elegans]
gi|18147775|dbj|BAB83255.1| histone stem-loop binding protein CDL-1
[Caenorhabditis elegans]
Length = 367
Score = 615 bits (1586), Expect = e-175
Identities = 309/367 (84%), Positives = 309/367 (84%)
Frame = +1
Query: 1 MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELAXX 180
MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELA
Sbjct: 1 MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELASR 60
Query: 181 XXXXXXXXXXXXXKGQPKRAQNSQNKPKFVRSLELTNEVFXXXXXXXXXXXXXXXXNGDT 360
KGQPKRAQNSQNKPKFVRSLELTNEVF NGDT
Sbjct: 61 LEEERRCKSESRRKGQPKRAQNSQNKPKFVRSLELTNEVFQSTSSRRSQRSKSRTRNGDT 120
Query: 361 IXXXXXXXXXXXXXXXXGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN 540
I GPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN
Sbjct: 121 ITTVEEHTETVVMESSSGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN 180
Query: 541 GGXXXXXXXXXXXRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR 720
GG RRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR
Sbjct: 181 GGSDSSSVASSPSRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR 240
Query: 721 IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD 900
IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD
Sbjct: 241 IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD 300
Query: 901 NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD 1080
NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD
Sbjct: 301 NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD 360
Query: 1081 FSKMSSH 1101
FSKMSSH
Sbjct: 361 FSKMSSH 367