Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= R06F6_1
         (1104 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25151998|ref|NP_496320.2| histone stem-loop binding protein, ...   615   e-175
gi|1353156|sp|Q09599|SLBP_CAEEL Histone RNA hairpin-binding prot...   615   e-175
gi|39597377|emb|CAE59605.1| Hypothetical protein CBG03013 [Caeno...   508   e-142
gi|5729862|ref|NP_006518.1| histone stem-loop binding protein; h...    84   6e-15
gi|6677987|ref|NP_033219.1| stem-loop binding protein [Mus muscu...    82   2e-14
gi|50747336|ref|XP_420843.1| PREDICTED: similar to Slbp protein ...    81   4e-14
gi|50747338|ref|XP_420844.1| PREDICTED: similar to histone stem-...    81   4e-14
gi|9789803|sp|Q9YGP6|SLB2_XENLA Oocyte-specific histone RNA stem...    80   8e-14
gi|38075549|ref|XP_122655.2| similar to histone stem-loop bindin...    79   1e-13
gi|20987196|gb|AAH29631.1| Slbp protein [Mus musculus]                 78   4e-13
gi|34878686|ref|XP_226070.2| similar to putative nuclear protein...    75   4e-12
gi|33416889|gb|AAH55585.1| Slbp protein [Danio rerio]                  74   8e-12
gi|40549389|gb|AAR87749.1| stem-loop binding protein [Lytechinus...    73   1e-11
gi|47551297|ref|NP_999831.1| stem-loop binding protein [Strongyl...    71   5e-11
gi|49522027|gb|AAH74636.1| Unknown (protein for MGC:69307) [Xeno...    70   7e-11
gi|17137748|ref|NP_477480.1| CG11886-PA [Drosophila melanogaster...    69   2e-10
gi|10334683|gb|AAG16723.1| histone mRNA stem-loop binding protei...    69   2e-10
gi|9789782|sp|P79943|SLBP_XENLA Histone RNA hairpin-binding prot...    69   2e-10
gi|47221334|emb|CAF97252.1| unnamed protein product [Tetraodon n...    68   3e-10
gi|49118473|gb|AAH73461.1| Unknown (protein for MGC:80972) [Xeno...    68   4e-10
gi|31208099|ref|XP_313016.1| ENSANGP00000011655 [Anopheles gambi...    67   6e-10
gi|31208101|ref|XP_313017.1| ENSANGP00000011730 [Anopheles gambi...    67   7e-10
gi|31208103|ref|XP_313018.1| ENSANGP00000023192 [Anopheles gambi...    67   7e-10
gi|42733684|gb|AAS38628.1| hypothetical protein [Dictyostelium d...    59   2e-07
gi|48869185|gb|AAT47181.1| histone stem loop binding protein [Bo...    46   0.001
gi|46229808|gb|EAK90626.1| SLBP family of RNA binding proteins [...    41   0.043
gi|46229508|gb|EAK90326.1| SLBP family of RNA binding proteins [...    39   0.16
gi|23613213|ref|NP_703535.1| hypothetical protein [Plasmodium fa...    39   0.22
gi|23482149|gb|EAA18214.1| hypothetical protein [Plasmodium yoel...    39   0.22
gi|38103348|gb|EAA50051.1| hypothetical protein MG03810.4 [Magna...    36   1.8
gi|50288371|ref|XP_446614.1| unnamed protein product [Candida gl...    35   3.1
gi|32469886|ref|NP_863058.1| putative resolvase [Pseudomonas put...    34   5.3
gi|29247279|gb|EAA38847.1| GLP_577_38920_45159 [Giardia lamblia ...    34   6.9
gi|33239534|ref|NP_874476.1| Dipeptidyl aminopeptidase family en...    34   6.9
gi|46443495|gb|EAL02776.1| hypothetical protein CaO19.9183 [Cand...    34   6.9
gi|32398739|emb|CAD98699.1| replication-associated histone mRNA ...    34   6.9


>gi|25151998|ref|NP_496320.2| histone stem-loop binding protein, Cell
            Death Lethal CDL-1 (43.1 kD) (cdl-1) [Caenorhabditis
            elegans]
          Length = 382

 Score =  615 bits (1586), Expect = e-175
 Identities = 309/367 (84%), Positives = 309/367 (84%)
 Frame = +1

Query: 1    MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELAXX 180
            MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELA
Sbjct: 16   MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELASR 75

Query: 181  XXXXXXXXXXXXXKGQPKRAQNSQNKPKFVRSLELTNEVFXXXXXXXXXXXXXXXXNGDT 360
                         KGQPKRAQNSQNKPKFVRSLELTNEVF                NGDT
Sbjct: 76   LEEERRCKSESRRKGQPKRAQNSQNKPKFVRSLELTNEVFQSTSSRRSQRSKSRTRNGDT 135

Query: 361  IXXXXXXXXXXXXXXXXGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN 540
            I                GPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN
Sbjct: 136  ITTVEEHTETVVMESSSGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN 195

Query: 541  GGXXXXXXXXXXXRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR 720
            GG           RRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR
Sbjct: 196  GGSDSSSVASSPSRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR 255

Query: 721  IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD 900
            IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD
Sbjct: 256  IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD 315

Query: 901  NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD 1080
            NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD
Sbjct: 316  NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD 375

Query: 1081 FSKMSSH 1101
            FSKMSSH
Sbjct: 376  FSKMSSH 382


>gi|1353156|sp|Q09599|SLBP_CAEEL Histone RNA hairpin-binding protein
            (Histone stem-loop binding protein)
 gi|7506364|pir||T23983 hypothetical protein R06F6.1 - Caenorhabditis
            elegans
 gi|1752650|emb|CAA71200.1| histone RNA hairpin-binding protein
            [Caenorhabditis elegans]
 gi|3878908|emb|CAA86782.1| Hypothetical protein R06F6.1
            [Caenorhabditis elegans]
 gi|18147775|dbj|BAB83255.1| histone stem-loop binding protein CDL-1
            [Caenorhabditis elegans]
          Length = 367

 Score =  615 bits (1586), Expect = e-175
 Identities = 309/367 (84%), Positives = 309/367 (84%)
 Frame = +1

Query: 1    MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELAXX 180
            MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELA
Sbjct: 1    MAQKTPTKGTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRSWAEVTEEDDELASR 60

Query: 181  XXXXXXXXXXXXXKGQPKRAQNSQNKPKFVRSLELTNEVFXXXXXXXXXXXXXXXXNGDT 360
                         KGQPKRAQNSQNKPKFVRSLELTNEVF                NGDT
Sbjct: 61   LEEERRCKSESRRKGQPKRAQNSQNKPKFVRSLELTNEVFQSTSSRRSQRSKSRTRNGDT 120

Query: 361  IXXXXXXXXXXXXXXXXGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN 540
            I                GPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN
Sbjct: 121  ITTVEEHTETVVMESSSGPISRKRCLSNASTINEGASPSKRRPETGKSNRKAPRGRLFTN 180

Query: 541  GGXXXXXXXXXXXRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR 720
            GG           RRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR
Sbjct: 181  GGSDSSSVASSPSRRDHWEEPTLGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDR 240

Query: 721  IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD 900
            IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD
Sbjct: 241  IKGQHPRTPNKLINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNTSFCYSDSDALSEAGD 300

Query: 901  NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD 1080
            NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD
Sbjct: 301  NDKEIENRSVLRDLVIPVTMRPEVDSMASLLGKFDVDSQMGMDESTLKASTNTDPSAPTD 360

Query: 1081 FSKMSSH 1101
            FSKMSSH
Sbjct: 361  FSKMSSH 367




[DB home][top]