Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= R12C12_7
(1023 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17535607|ref|NP_495208.1| RAN (nuclear import/export) related... 560 e-158
gi|39597016|emb|CAE59243.1| Hypothetical protein CBG02569 [Caeno... 452 e-126
gi|49671149|gb|AAH75117.1| Unknown (protein for MGC:79798) [Xeno... 93 9e-18
gi|48734618|gb|AAH72034.1| Unknown (protein for MGC:78826) [Xeno... 93 1e-17
gi|50760914|ref|XP_418179.1| PREDICTED: similar to RAN binding p... 89 1e-16
gi|41053770|ref|NP_957434.1| similar to RAN binding protein 3 [D... 85 3e-15
gi|4506409|ref|NP_003615.1| RAN binding protein 3 isoform RANBP3... 80 6e-14
gi|6466466|ref|NP_015561.1| RAN binding protein 3 isoform RANBP3... 80 7e-14
gi|3075377|gb|AAC14485.1| F23487_2 [Homo sapiens] 80 7e-14
gi|7512902|pir||T08778 hypothetical protein DKFZp586I1520.1 - hu... 80 7e-14
gi|41053487|ref|NP_956984.1| hypothetical protein MGC66385 [Dani... 79 1e-13
gi|3687394|emb|CAA69956.1| ranbp3-a [Homo sapiens] 78 3e-13
gi|6466462|ref|NP_015559.1| RAN binding protein 3 isoform RANBP3... 78 3e-13
gi|37574124|ref|NP_932141.1| RIKEN cDNA C130037N17 gene [Mus mus... 77 5e-13
gi|12847730|dbj|BAB27684.1| unnamed protein product [Mus musculus] 77 8e-13
gi|47223078|emb|CAG07165.1| unnamed protein product [Tetraodon n... 76 1e-12
gi|32469208|dbj|BAC78900.1| calcineurin-binding protein of 75 kD... 74 5e-12
gi|48096662|ref|XP_394744.1| similar to CG10225-PA [Apis mellifera] 72 2e-11
gi|34882311|ref|XP_236778.2| similar to RAN binding protein 3 is... 68 3e-10
gi|38082730|ref|XP_128698.4| RIKEN cDNA 2610024N24 [Mus musculus] 67 5e-10
gi|31377593|ref|NP_659437.2| hypothetical protein FLJ25422 [Homo... 65 2e-09
gi|34854354|ref|XP_215498.2| similar to Hypothetical protein FLJ... 65 2e-09
gi|31209707|ref|XP_313820.1| ENSANGP00000012245 [Anopheles gambi... 57 9e-07
gi|50294960|ref|XP_449891.1| unnamed protein product [Candida gl... 57 9e-07
gi|21355293|ref|NP_651178.1| CG10225-PA [Drosophila melanogaster... 57 9e-07
gi|50425143|ref|XP_461163.1| unnamed protein product [Debaryomyc... 51 5e-05
gi|19075437|ref|NP_587937.1| putative nucleoporin; nuclear pore ... 49 2e-04
gi|50424231|ref|XP_460702.1| unnamed protein product [Debaryomyc... 48 4e-04
gi|49083968|ref|XP_404221.1| hypothetical protein AN0084.2 [Aspe... 48 4e-04
gi|50255736|gb|EAL18468.1| hypothetical protein CNBJ1100 [Crypto... 47 7e-04
gi|6322126|ref|NP_012201.1| Ran-GTPase-binding protein involved ... 47 0.001
gi|32403832|ref|XP_322529.1| hypothetical protein [Neurospora cr... 46 0.001
gi|38106168|gb|EAA52511.1| hypothetical protein MG05203.4 [Magna... 45 0.002
gi|8039801|sp|P48820|RBP2_BOVIN Ran-binding protein 2 (RanBP2) (... 45 0.003
gi|50730490|ref|XP_416929.1| PREDICTED: similar to Ran-binding p... 45 0.003
gi|19111914|ref|NP_595122.1| ran/spi1 binding protein. [Schizosa... 44 0.005
gi|21536684|gb|AAM61016.1| unknown [Arabidopsis thaliana] 44 0.008
gi|1709217|sp|P49792|RBP2_HUMAN Ran-binding protein 2 (RanBP2) (... 44 0.008
gi|624232|gb|AAA85838.1| Ran binding protein 44 0.008
gi|1098322|prf||2115390A Ran/TC4-binding nucleopore protein 44 0.008
gi|6382079|ref|NP_006258.2| RAN binding protein 2; nucleoporin 3... 44 0.008
gi|30697102|ref|NP_200667.2| Ran-binding protein 1, putative / R... 44 0.008
gi|8843780|dbj|BAA97328.1| unnamed protein product [Arabidopsis ... 44 0.008
gi|2137719|pir||S57968 Ran-binding protein 2 - mouse (fragment) ... 43 0.010
gi|46116530|ref|XP_384283.1| conserved hypothetical protein [Gib... 43 0.010
gi|19882199|ref|NP_035370.1| RAN binding protein 2 [Mus musculus... 43 0.010
gi|42656247|ref|XP_376112.1| similar to RAN-binding protein 2-li... 43 0.013
gi|34852558|ref|XP_215401.2| similar to Ran-binding protein 2 [R... 43 0.013
gi|34856510|ref|XP_342460.1| similar to RAN binding protein 3 is... 42 0.017
gi|5809678|gb|AAB41848.2| sperm membrane protein BS-63 [Homo sap... 42 0.017
gi|19718755|ref|NP_005045.1| RAN-binding protein 2-like 1 isofor... 42 0.017
gi|41118731|ref|XP_371552.1| similar to RAN-binding protein 2-li... 42 0.017
gi|2293556|gb|AAC05596.1| Ran binding protein 2 [Homo sapiens] 42 0.017
gi|50305191|ref|XP_452554.1| unnamed protein product [Kluyveromy... 42 0.023
gi|19112834|ref|NP_596042.1| brefeldin a resistance protein. [Sc... 42 0.023
gi|45187813|ref|NP_984036.1| ADL060Wp [Eremothecium gossypii] >g... 42 0.023
gi|50303731|ref|XP_451810.1| unnamed protein product [Kluyveromy... 42 0.030
gi|34329354|gb|AAQ63888.1| RAN-binding protein 2-like 1 short is... 42 0.030
gi|41190500|ref|XP_371513.1| similar to RAN-binding protein 2-li... 42 0.030
gi|14091665|gb|AAK53813.1| Ran binding protein-1 [Lycopersicon e... 42 0.030
gi|11359312|pir||T51307 spi1-GTP-binding protein [validated] - f... 42 0.030
gi|18403992|ref|NP_564606.1| Ran-binding protein 1 domain-contai... 41 0.039
gi|22655290|gb|AAM98235.1| unknown protein [Arabidopsis thaliana] 41 0.039
gi|47211182|emb|CAF92409.1| unnamed protein product [Tetraodon n... 41 0.050
gi|31205915|ref|XP_311909.1| ENSANGP00000010912 [Anopheles gambi... 40 0.066
gi|45185263|ref|NP_982980.1| ABR034Wp [Eremothecium gossypii] >g... 40 0.086
gi|49074932|ref|XP_401565.1| hypothetical protein UM03950.1 [Ust... 40 0.086
gi|15222310|ref|NP_172194.1| Ran-binding protein 1a (RanBP1a) [A... 40 0.11
gi|2058282|emb|CAA66045.1| atranbp1a [Arabidopsis thaliana] 40 0.11
gi|49071770|ref|XP_400174.1| hypothetical protein UM02559.1 [Ust... 39 0.15
gi|6473569|dbj|BAA87154.1| Brefeldin A resistance protein prf1 [... 39 0.19
gi|20152047|gb|AAM11383.1| LD43045p [Drosophila melanogaster] 39 0.19
gi|45550830|ref|NP_651361.2| CG11856-PA [Drosophila melanogaster... 39 0.19
gi|13279302|gb|AAH04349.1| RANBP3 protein [Homo sapiens] 38 0.33
gi|46432718|gb|EAK92188.1| hypothetical protein CaO19.6665 [Cand... 38 0.33
gi|31205917|ref|XP_311910.1| ENSANGP00000023562 [Anopheles gambi... 38 0.33
gi|20260400|gb|AAM13098.1| Ran binding protein [Arabidopsis thal... 38 0.33
gi|2058284|emb|CAA66046.1| atranbp1b [Arabidopsis thaliana] 38 0.33
gi|15227700|ref|NP_180567.1| Ran-binding protein 1b (RanBP1b) [A... 38 0.33
gi|49072028|ref|XP_400303.1| hypothetical protein UM02688.1 [Ust... 38 0.43
gi|50545888|ref|XP_500482.1| hypothetical protein [Yarrowia lipo... 37 0.56
gi|6474498|dbj|BAA87262.1| Putative nuclear pore protein [Schizo... 37 0.73
gi|48102354|ref|XP_395339.1| similar to ENSANGP00000010912 [Apis... 37 0.73
gi|5107683|pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd... 37 0.95
gi|624230|gb|AAA85837.1| Ran binding protein 37 0.95
gi|39590655|emb|CAE65025.1| Hypothetical protein CBG09863 [Caeno... 36 1.2
gi|38106659|gb|EAA52939.1| hypothetical protein MG06067.4 [Magna... 36 1.6
gi|5106769|gb|AAD39835.1| Ran-binding protein siRanBP [Arabidops... 36 1.6
gi|48526358|gb|AAT45384.1| sperm nuclear basic protein PL-I isof... 35 2.1
gi|50287943|ref|XP_446400.1| unnamed protein product [Candida gl... 35 2.1
gi|17570615|ref|NP_508857.1| putative protein (XF654) [Caenorhab... 35 2.8
gi|7510771|pir||T29919 hypothetical protein ZC449.5 - Caenorhabd... 35 2.8
gi|23509396|ref|NP_702063.1| hypothetical protein [Plasmodium fa... 35 3.6
gi|23612249|ref|NP_703829.1| hypothetical protein [Plasmodium fa... 34 4.7
gi|29612012|ref|NP_819004.1| C protein; capsid protein [Semliki ... 34 4.7
gi|40388707|gb|AAR85531.1| polyketide synthase [Mycosphaerella z... 34 4.7
gi|16767847|ref|NP_463458.1| Precursor of structural proteins [S... 34 4.7
gi|32565674|ref|NP_871701.1| RanBP1 domain containing protein, N... 34 6.2
gi|17553754|ref|NP_497703.1| RanBP1 domain containing protein, N... 34 6.2
gi|32422223|ref|XP_331555.1| hypothetical protein [Neurospora cr... 33 8.0
gi|50411801|ref|XP_457079.1| unnamed protein product [Debaryomyc... 33 8.0
gi|6323460|ref|NP_013533.1| Coronin, cortical actin cytoskeletal... 30 8.8
gi|50546887|ref|XP_500913.1| hypothetical protein [Yarrowia lipo... 29 9.5
>gi|17535607|ref|NP_495208.1| RAN (nuclear import/export) related
(37.5 kD) (ran-5) [Caenorhabditis elegans]
gi|7506664|pir||T16733 hypothetical protein R12C12.2 -
Caenorhabditis elegans
gi|746455|gb|AAC46781.1| Associated with ran (nuclear
import/export) function protein 5 [Caenorhabditis
elegans]
Length = 340
Score = 560 bits (1443), Expect = e-158
Identities = 289/326 (88%), Positives = 289/326 (88%)
Frame = +1
Query: 1 MSKGFAFKPSALAAKADKLWSDSKTEYTATHSTINHVHLEKKSLGDIIPKSADAPVANEK 180
MSKGFAFKPSALAAKADKLWSDSKTEYTATHSTINHVHLEKKSLGDIIPKSADAPVANEK
Sbjct: 1 MSKGFAFKPSALAAKADKLWSDSKTEYTATHSTINHVHLEKKSLGDIIPKSADAPVANEK 60
Query: 181 EVEEAPQAFVFGSKISDRVVNKEGDSTKPGGSDEKTMTATELFQNAVKKDDDKNGAKNFX 360
EVEEAPQAFVFGSKISDRVVNKEGDSTKPGGSDEKTMTATELFQNAVKKDDDKNGAKNF
Sbjct: 61 EVEEAPQAFVFGSKISDRVVNKEGDSTKPGGSDEKTMTATELFQNAVKKDDDKNGAKNFR 120
Query: 361 XXXXXXXXXXXXXXXXHAGTSSVEITTGEENDTNIFQAPCKIWAFDKLKNAYSEKGVCNL 540
HAGTSSVEITTGEENDTNIFQAPCKIWAFDKLKNAYSEKGVCNL
Sbjct: 121 KEAEQEAERAKEAEKQHAGTSSVEITTGEENDTNIFQAPCKIWAFDKLKNAYSEKGVCNL 180
Query: 541 RINKRVENGLTHHRIVARTSSGTLRVIINSKIFSDMLLERVDKRIRISAMGPEISGVQIF 720
RINKRVENGLTHHRIVARTSSGTLRVIINSKIFSDMLLERVDKRIRISAMGPEISGVQIF
Sbjct: 181 RINKRVENGLTHHRIVARTSSGTLRVIINSKIFSDMLLERVDKRIRISAMGPEISGVQIF 240
Query: 721 LLKIGFTKTETIPDSDIFYNIMSDLLKLEKGENSRKRKADCDLNASTXXXXXXXXXXXXX 900
LLKIGFTKTETIPDSDIFYNIMSDLLKLEKGENSRKRKADCDLNAST
Sbjct: 241 LLKIGFTKTETIPDSDIFYNIMSDLLKLEKGENSRKRKADCDLNASTVKIKDGKEEEEGD 300
Query: 901 XXXXXXXFVIVNKPTEDEVKEEKPAV 978
FVIVNKPTEDEVKEEKPAV
Sbjct: 301 QDQVDEGFVIVNKPTEDEVKEEKPAV 326