Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= T13H5_3
(894 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17536263|ref|NP_495796.1| RiboNuclease H (33.2 kD) (rnh-2) [C... 599 e-170
gi|7507804|pir||T24897 hypothetical protein T13H5.2 - Caenorhabd... 571 e-162
gi|39590015|emb|CAE61013.1| Hypothetical protein CBG04751 [Caeno... 518 e-146
gi|38089376|ref|XP_356099.1| RIKEN cDNA 2400006P09 [Mus musculus... 259 4e-68
gi|20978737|sp|Q9CWY8|RNHL_MOUSE Ribonuclease HI large subunit (... 259 4e-68
gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens] 257 2e-67
gi|31226855|ref|XP_317779.1| ENSANGP00000022231 [Anopheles gambi... 254 2e-66
gi|38455391|ref|NP_006388.2| ribonuclease HI, large subunit [Hom... 254 2e-66
gi|48762662|ref|NP_956520.2| hypothetical protein MGC56307 [Dani... 253 3e-66
gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo s... 253 3e-66
gi|45361019|ref|NP_989146.1| hypothetical protein MGC76169 [Xeno... 253 5e-66
gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio... 252 7e-66
gi|28374439|gb|AAH46061.1| Hypothetical protein MGC56307 [Danio ... 252 7e-66
gi|49115760|gb|AAH73515.1| Unknown (protein for IMAGE:5156492) [... 251 1e-65
gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens] 251 2e-65
gi|24580635|ref|NP_608521.1| CG13690-PA [Drosophila melanogaster... 242 7e-63
gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodiu... 234 2e-60
gi|23612316|ref|NP_703896.1| ribonuclease H1 large subunit, puta... 228 1e-58
gi|18400719|ref|NP_565584.1| ribonuclease HII family protein [Ar... 200 3e-50
gi|46442777|gb|EAL02064.1| hypothetical protein CaO19.13915 [Can... 199 5e-50
gi|25412277|pir||C84644 probable ribonuclease large subunit [imp... 193 4e-48
gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [... 192 6e-48
gi|50405853|ref|XP_456567.1| unnamed protein product [Debaryomyc... 191 1e-47
gi|34851532|ref|XP_344744.1| similar to Ribonuclease HI large su... 191 2e-47
gi|50551451|ref|XP_503199.1| hypothetical protein [Yarrowia lipo... 182 9e-45
gi|45190965|ref|NP_985219.1| AER363Wp [Eremothecium gossypii] >g... 181 1e-44
gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Crypto... 180 3e-44
gi|6324257|ref|NP_014327.1| Ribonuclease H2 catalytic subunit, r... 179 6e-44
gi|19114596|ref|NP_593684.1| hypothetical protein [Schizosacchar... 178 2e-43
gi|32419629|ref|XP_330258.1| PROBABLE RIBONUCLEASE HI LARGE SUBU... 177 4e-43
gi|49080460|ref|XP_403746.1| hypothetical protein UM06131.1 [Ust... 164 2e-39
gi|50291445|ref|XP_448155.1| unnamed protein product [Candida gl... 164 3e-39
gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gib... 164 3e-39
gi|50310553|ref|XP_455296.1| unnamed protein product [Kluyveromy... 157 4e-37
gi|38109424|gb|EAA55302.1| hypothetical protein MG06959.4 [Magna... 157 4e-37
gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major] 148 2e-34
gi|49095580|ref|XP_409251.1| hypothetical protein AN5114.2 [Aspe... 147 2e-34
gi|29249877|gb|EAA41380.1| GLP_630_32259_32990 [Giardia lamblia ... 145 1e-33
gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon n... 134 3e-30
gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAM... 123 6e-27
gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi... 113 7e-24
gi|45358937|ref|NP_988494.1| Ribonuclease HII [Methanococcus mar... 110 3e-23
gi|14591420|ref|NP_143500.1| ribonuclease H II [Pyrococcus horik... 110 6e-23
gi|48111095|ref|XP_396289.1| similar to Probable ribonuclease HI... 109 7e-23
gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribo... 108 2e-22
gi|7227922|sp|O74035|RNH2_PYRKO Ribonuclease HII (RNase HII) >gn... 108 2e-22
gi|18978153|ref|NP_579510.1| RNaseH II [Pyrococcus furiosus DSM ... 104 3e-21
gi|41720607|ref|ZP_00149420.1| COG0164: Ribonuclease HII [Methan... 103 5e-21
gi|34395818|sp|Q97CG6|RNH2_THEVO Ribonuclease HII (RNase HII) 99 2e-19
gi|13540964|ref|NP_110652.1| Ribonuclease HII [Thermoplasma volc... 99 2e-19
gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volca... 99 2e-19
gi|15668305|ref|NP_247101.1| ribonuclease HII (rnhB) [Methanocal... 97 4e-19
gi|15899137|ref|NP_343742.1| Ribonuclease HII (rnhB) [Sulfolobus... 96 8e-19
gi|15920736|ref|NP_376405.1| 208aa long hypothetical ribonucleas... 96 1e-18
gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torri... 95 2e-18
gi|41614859|ref|NP_963357.1| NEQ063 [Nanoarchaeum equitans Kin4-... 94 5e-18
gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ri... 93 7e-18
gi|48852042|ref|ZP_00306234.1| COG0164: Ribonuclease HII [Ferrop... 92 2e-17
gi|16082425|ref|NP_394911.1| probable ribonuclease HII [Thermopl... 92 2e-17
gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobact... 91 3e-17
gi|11498229|ref|NP_069455.1| ribonuclease HII (rnhB) [Archaeoglo... 89 1e-16
gi|47213806|emb|CAF92579.1| unnamed protein product [Tetraodon n... 89 1e-16
gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Ful... 89 1e-16
gi|21228916|ref|NP_634838.1| Ribonuclease [Methanosarcina mazei ... 88 2e-16
gi|20090807|ref|NP_616882.1| ribonuclease Hii [Methanosarcina ac... 88 2e-16
gi|48838779|ref|ZP_00295718.1| COG0164: Ribonuclease HII [Methan... 87 5e-16
gi|20093626|ref|NP_613473.1| Ribonuclease HII [Methanopyrus kand... 84 3e-15
gi|14600759|ref|NP_147280.1| ribonuclease HII [Aeropyrum pernix ... 82 2e-14
gi|18312482|ref|NP_559149.1| ribonuclease HII (rnhB) [Pyrobaculu... 74 6e-12
gi|30021925|ref|NP_833556.1| Ribonuclease HII [Bacillus cereus A... 70 5e-11
gi|42782929|ref|NP_980176.1| ribonuclease HII [Bacillus cereus A... 69 1e-10
gi|47570338|ref|ZP_00240983.1| ribonuclease HII [Bacillus cereus... 69 1e-10
gi|15790853|ref|NP_280677.1| RNAase H; Rnh [Halobacterium sp. NR... 69 2e-10
gi|48787680|ref|ZP_00283659.1| COG0164: Ribonuclease HII [Burkho... 67 4e-10
gi|49478406|ref|YP_037898.1| ribonuclease HII (RNase HII) [Bacil... 67 5e-10
gi|21401820|ref|NP_657805.1| RNase_HII, Ribonuclease HII [Bacill... 67 5e-10
gi|16803313|ref|NP_464798.1| similar to ribonuclease H rnh [List... 67 5e-10
gi|46907500|ref|YP_013889.1| ribonuclease HII [Listeria monocyto... 65 2e-09
gi|47093922|ref|ZP_00231661.1| ribonuclease HII [Listeria monocy... 65 2e-09
gi|23098995|ref|NP_692461.1| ribonuclease H [Oceanobacillus ihey... 65 3e-09
gi|48861395|ref|ZP_00315297.1| COG0164: Ribonuclease HII [Microb... 64 3e-09
gi|24373211|ref|NP_717254.1| ribonuclease HII [Shewanella oneide... 64 6e-09
gi|16800380|ref|NP_470648.1| similar to ribonuclease H rnh [List... 63 1e-08
gi|46319055|ref|ZP_00219475.1| COG0164: Ribonuclease HII [Burkho... 62 2e-08
gi|48849399|ref|ZP_00303642.1| COG0164: Ribonuclease HII [Novosp... 62 2e-08
gi|46311925|ref|ZP_00212526.1| COG0164: Ribonuclease HII [Burkho... 61 3e-08
gi|48858002|ref|ZP_00311973.1| COG0164: Ribonuclease HII [Clostr... 61 4e-08
gi|26988337|ref|NP_743762.1| ribonuclease HII [Pseudomonas putid... 61 4e-08
gi|48732735|ref|ZP_00266478.1| COG0164: Ribonuclease HII [Pseudo... 60 5e-08
gi|29376207|ref|NP_815361.1| ribonuclease HII [Enterococcus faec... 60 9e-08
gi|39995755|ref|NP_951706.1| ribonuclease HII [Geobacter sulfurr... 59 1e-07
gi|29654636|ref|NP_820328.1| ribonuclease HII [Coxiella burnetii... 59 1e-07
gi|15903088|ref|NP_358638.1| Ribonuclease H [Streptococcus pneum... 59 1e-07
gi|48825838|ref|ZP_00287075.1| COG1039: Ribonuclease HIII [Enter... 59 2e-07
gi|23023635|ref|ZP_00062868.1| COG0164: Ribonuclease HII [Leucon... 59 2e-07
gi|15901021|ref|NP_345625.1| ribonuclease HII [Streptococcus pne... 59 2e-07
gi|48844424|ref|ZP_00298736.1| COG0164: Ribonuclease HII [Geobac... 58 2e-07
gi|15673275|ref|NP_267449.1| ribonuclease HII [Lactococcus lacti... 58 2e-07
gi|16121358|ref|NP_404671.1| ribonuclease HII [Yersinia pestis] ... 58 3e-07
gi|46164352|ref|ZP_00205049.1| COG0164: Ribonuclease HII [Pseudo... 57 4e-07
gi|33862058|ref|NP_893619.1| Ribonuclease HII and HIII [Prochlor... 57 4e-07
gi|49082728|gb|AAT50764.1| PA3642 [synthetic construct] 57 4e-07
gi|27377632|ref|NP_769161.1| ribonuclease HII [Bradyrhizobium ja... 57 6e-07
gi|50119985|ref|YP_049152.1| ribonuclease HII [Erwinia carotovor... 57 6e-07
gi|15598838|ref|NP_252332.1| ribonuclease HII [Pseudomonas aerug... 57 6e-07
gi|20372971|dbj|BAB91155.1| ribonuclease HII [Geobacillus stearo... 57 6e-07
gi|48870537|ref|ZP_00323258.1| COG0164: Ribonuclease HII [Pedioc... 57 6e-07
gi|46188415|ref|ZP_00125853.2| COG0164: Ribonuclease HII [Pseudo... 57 7e-07
gi|50842913|ref|YP_056140.1| ribonuclease HII [Propionibacterium... 57 7e-07
gi|19704706|ref|NP_604268.1| Ribonuclease HII [Fusobacterium nuc... 56 9e-07
gi|31544611|ref|NP_853189.1| Ribonuclease HII [Mycoplasma gallis... 56 1e-06
gi|28868754|ref|NP_791373.1| ribonuclease HII [Pseudomonas syrin... 56 1e-06
gi|48833388|ref|ZP_00290408.1| COG0164: Ribonuclease HII [Magnet... 56 1e-06
gi|17987825|ref|NP_540459.1| RIBONUCLEASE HII [Brucella melitens... 56 1e-06
gi|27365221|ref|NP_760749.1| Ribonuclease HII [Vibrio vulnificus... 55 2e-06
gi|21910354|ref|NP_664622.1| putative ribonuclease HII [Streptoc... 55 2e-06
gi|46143677|ref|ZP_00134750.2| COG0164: Ribonuclease HII [Actino... 55 2e-06
gi|17546137|ref|NP_519539.1| PROBABLE RIBONUCLEASE HII PROTEIN [... 55 2e-06
gi|24111618|ref|NP_706128.1| RNAse HII, degrades RNA of DNA-RNA ... 55 3e-06
gi|16759220|ref|NP_454837.1| ribonuclease HII [Salmonella enteri... 55 3e-06
gi|16128176|ref|NP_414725.1| RNAse HII, degrades RNA of DNA-RNA ... 55 3e-06
gi|22537172|ref|NP_688023.1| ribonuclease HII [Streptococcus aga... 55 3e-06
gi|24379434|ref|NP_721389.1| putative ribonuclease HII [Streptoc... 55 3e-06
gi|15643677|ref|NP_228723.1| ribonuclease HII [Thermotoga mariti... 55 3e-06
gi|4902924|dbj|BAA77858.1| Ribonuclease H (EC 3.1.26.4) II. [Esc... 55 3e-06
gi|29840412|ref|NP_829518.1| ribonuclease HII [Chlamydophila cav... 54 4e-06
gi|37524687|ref|NP_928031.1| Ribonuclease HII (RNase HII) [Photo... 54 4e-06
gi|15603863|ref|NP_246937.1| RnhB [Pasteurella multocida Pm70] >... 54 4e-06
gi|46914509|emb|CAG21288.1| putative ribonuclease HII [Photobact... 54 5e-06
gi|48824908|ref|ZP_00286229.1| COG0164: Ribonuclease HII [Entero... 54 5e-06
gi|39934109|ref|NP_946385.1| possible ribonuclease HII [Rhodopse... 54 5e-06
gi|18310688|ref|NP_562622.1| ribonuclease HII [Clostridium perfr... 54 6e-06
gi|23105079|ref|ZP_00091537.1| COG0164: Ribonuclease HII [Azotob... 54 6e-06
gi|16078669|ref|NP_389488.1| ribonuclease HII [Bacillus subtilis... 54 6e-06
gi|33152162|ref|NP_873515.1| ribonuclease HII [Haemophilus ducre... 54 6e-06
gi|48868145|ref|ZP_00321522.1| COG0164: Ribonuclease HII [Haemop... 54 6e-06
gi|26246129|ref|NP_752168.1| Ribonuclease HII [Escherichia coli ... 53 8e-06
gi|15675138|ref|NP_269312.1| putative ribonuclease HII [Streptoc... 53 8e-06
gi|20807898|ref|NP_623069.1| Ribonuclease HII [Thermoanaerobacte... 53 8e-06
gi|15799865|ref|NP_285877.1| RNAse HII, degrades RNA of DNA-RNA ... 53 1e-05
gi|50877695|emb|CAG37535.1| probable ribonuclease HII [Desulfota... 53 1e-05
gi|19746108|ref|NP_607244.1| putative ribonuclease HII [Streptoc... 53 1e-05
gi|46446292|ref|YP_007657.1| putative ribonuclease HII [Parachla... 53 1e-05
gi|50590491|ref|ZP_00331867.1| COG0164: Ribonuclease HII [Strept... 53 1e-05
gi|28899078|ref|NP_798683.1| ribonuclease HII [Vibrio parahaemol... 52 1e-05
gi|42527055|ref|NP_972153.1| ribonuclease HII [Treponema dentico... 52 1e-05
gi|15888064|ref|NP_353745.1| AGR_C_1307p [Agrobacterium tumefaci... 52 2e-05
gi|32265505|ref|NP_859537.1| ribonuclease HII [Helicobacter hepa... 52 2e-05
gi|17934630|ref|NP_531420.1| ribonuclease HII [Agrobacterium tum... 52 2e-05
gi|16272990|ref|NP_439217.1| ribonuclease HII [Haemophilus influ... 52 2e-05
gi|42631364|ref|ZP_00156902.1| COG0164: Ribonuclease HII [Haemop... 52 2e-05
gi|15791409|ref|NP_281232.1| ribonuclease HII [Campylobacter jej... 52 2e-05
gi|15895039|ref|NP_348388.1| Ribonuclease HII [Clostridium aceto... 52 2e-05
gi|46112900|ref|ZP_00181998.2| COG0164: Ribonuclease HII [Exiguo... 51 3e-05
gi|15642244|ref|NP_231877.1| ribonuclease HII [Vibrio cholerae O... 51 3e-05
gi|42453411|ref|ZP_00153318.1| hypothetical protein Rick025501 [... 51 3e-05
gi|15675667|ref|NP_269841.1| putative ribonuclease HIII [Strepto... 51 3e-05
gi|50084434|ref|YP_045944.1| RNAse HII [Acinetobacter sp. ADP1] ... 51 3e-05
gi|21282856|ref|NP_645944.1| RNase HII [Staphylococcus aureus su... 51 3e-05
gi|49483407|ref|YP_040631.1| putative ribonuclease HII [Staphylo... 51 3e-05
gi|42630126|ref|ZP_00155670.1| COG0164: Ribonuclease HII [Haemop... 51 3e-05
gi|23467120|ref|ZP_00122704.1| COG0164: Ribonuclease HII [Haemop... 51 4e-05
gi|23002432|ref|ZP_00046108.1| COG0164: Ribonuclease HII [Lactob... 51 4e-05
gi|21911127|ref|NP_665395.1| putative ribonuclease HIII [Strepto... 51 4e-05
gi|15924234|ref|NP_371768.1| RNase HII [Staphylococcus aureus su... 51 4e-05
gi|42519032|ref|NP_964962.1| ribonuclease HII [Lactobacillus joh... 50 5e-05
gi|49237067|ref|ZP_00331122.1| COG0164: Ribonuclease HII [Moorel... 50 5e-05
gi|42520908|ref|NP_966823.1| ribonuclease HII [Wolbachia endosym... 50 7e-05
gi|15902409|ref|NP_357959.1| Ribonuclease HII [Streptococcus pne... 50 7e-05
gi|45528240|ref|ZP_00179439.1| COG0164: Ribonuclease HII [Crocos... 50 7e-05
gi|34580789|ref|ZP_00142269.1| ribonuclease HII [Rickettsia sibi... 50 7e-05
gi|15892187|ref|NP_359901.1| ribonuclease HII [EC:3.1.26.4] [Ric... 50 7e-05
gi|47575427|ref|ZP_00245462.1| COG0164: Ribonuclease HII [Rubriv... 50 7e-05
gi|16800260|ref|NP_470528.1| similar to B. subtilis ribonuclease... 50 7e-05
gi|15900322|ref|NP_344926.1| ribonuclease HIII [Streptococcus pn... 50 9e-05
gi|15964592|ref|NP_384945.1| PROBABLE RIBONUCLEASE HII PROTEIN [... 50 9e-05
gi|46907447|ref|YP_013836.1| ribonuclease HIII, putative [Lister... 50 9e-05
gi|28210941|ref|NP_781885.1| ribonuclease HII [Clostridium tetan... 50 9e-05
gi|15793104|ref|NP_282926.1| ribonuclease HII [Neisseria meningi... 50 9e-05
gi|46398979|gb|AAS92175.1| RNase H ribonuclease [Legionella pneu... 49 1e-04
gi|46398977|gb|AAS92174.1| RNase H ribonuclease [Legionella pneu... 49 1e-04
gi|46398969|gb|AAS92170.1| RNase H ribonuclease [Legionella pneu... 49 1e-04
gi|46398973|gb|AAS92172.1| RNase H ribonuclease [Legionella pneu... 49 1e-04
gi|46398965|gb|AAS92168.1| RNase H ribonuclease [Legionella pneu... 49 1e-04
gi|47095070|ref|ZP_00232683.1| ribonuclease HIII, putative [List... 49 1e-04
gi|45915433|ref|ZP_00197087.1| COG0164: Ribonuclease HII [Mesorh... 49 1e-04
gi|21230816|ref|NP_636733.1| ribonuclease HII [Xanthomonas campe... 49 1e-04
gi|46140531|ref|ZP_00152093.2| COG0164: Ribonuclease HII [Dechlo... 49 1e-04
gi|22537861|ref|NP_688712.1| ribonuclease HIII [Streptococcus ag... 49 1e-04
gi|15604747|ref|NP_219531.1| Ribonuclease HII [Chlamydia trachom... 49 1e-04
gi|16803268|ref|NP_464753.1| similar to B. subtilis ribonuclease... 49 1e-04
gi|15676119|ref|NP_273250.1| ribonuclease HII [Neisseria meningi... 49 1e-04
gi|28378510|ref|NP_785402.1| ribonuclease HII [Lactobacillus pla... 49 2e-04
gi|22996824|ref|ZP_00041067.1| COG0164: Ribonuclease HII [Xylell... 49 2e-04
gi|22993954|ref|ZP_00038486.1| COG0164: Ribonuclease HII [Xylell... 49 2e-04
gi|28198242|ref|NP_778556.1| ribonuclease HII [Xylella fastidios... 49 2e-04
gi|49475220|ref|YP_033261.1| Ribonuclease HII [Bartonella hensel... 49 2e-04
gi|46129547|ref|ZP_00164022.2| COG0164: Ribonuclease HII [Synech... 49 2e-04
gi|15834918|ref|NP_296677.1| ribonuclease HII [Chlamydia muridar... 49 2e-04
gi|48894964|ref|ZP_00328073.1| COG0164: Ribonuclease HII [Tricho... 48 3e-04
gi|27467840|ref|NP_764477.1| RNase HII [Staphylococcus epidermid... 48 3e-04
gi|15615038|ref|NP_243341.1| ribonuclease H [Bacillus halodurans... 48 3e-04
gi|25011806|ref|NP_736201.1| Unknown [Streptococcus agalactiae N... 48 3e-04
gi|34497665|ref|NP_901880.1| ribonuclease HII [Chromobacterium v... 47 4e-04
gi|4514315|dbj|BAA75362.1| RNaseH [Bacillus halodurans] 47 4e-04
gi|23025724|ref|ZP_00064639.1| COG0164: Ribonuclease HII [Leucon... 47 4e-04
gi|47571680|ref|ZP_00241730.1| COG0164: Ribonuclease HII [Rubriv... 47 6e-04
gi|29828995|ref|NP_823629.1| putative ribonuclease HII [Streptom... 47 6e-04
gi|50591846|ref|ZP_00333148.1| COG1039: Ribonuclease HIII [Strep... 47 6e-04
gi|23099583|ref|NP_693049.1| ribonuclease HIII [Oceanobacillus i... 47 6e-04
gi|15618043|ref|NP_224327.1| Ribonuclease HII [Chlamydophila pne... 47 7e-04
gi|49473986|ref|YP_032028.1| Ribonuclease HII [Bartonella quinta... 47 7e-04
gi|21242160|ref|NP_641742.1| ribonuclease HII [Xanthomonas axono... 47 7e-04
gi|34763383|ref|ZP_00144335.1| Ribonuclease HII [Fusobacterium n... 46 0.001
gi|16329251|ref|NP_439979.1| ribonuclease HII [Synechocystis sp.... 46 0.001
gi|45657433|ref|YP_001519.1| ribonuclease HII [Leptospira interr... 46 0.001
gi|33592531|ref|NP_880175.1| ribonuclease HII [Bordetella pertus... 46 0.001
gi|42523584|ref|NP_968964.1| ribonuclease HII (RNase HII) [Bdell... 46 0.001
gi|29375836|ref|NP_814990.1| ribonuclease HIII [Enterococcus fae... 45 0.002
gi|50365354|ref|YP_053779.1| Ribonuclease HII, primer excision [... 45 0.002
gi|33519750|ref|NP_878582.1| ribonuclease HII [Candidatus Blochm... 45 0.002
gi|23024110|ref|ZP_00063333.1| COG1039: Ribonuclease HIII [Leuco... 45 0.002
gi|30249669|ref|NP_841739.1| Ribonuclease HII and HIII [Nitrosom... 45 0.002
gi|21224156|ref|NP_629935.1| probable ribonuclease HII [Streptom... 45 0.002
gi|46106503|ref|ZP_00200016.1| COG1039: Ribonuclease HIII [Rubro... 45 0.002
gi|49478678|ref|YP_038604.1| ribonuclease HII [Bacillus thuringi... 45 0.002
gi|29469217|gb|AAO65330.1| putative ribonuclease HII [Streptomyc... 45 0.002
gi|48834987|ref|ZP_00291990.1| COG0164: Ribonuclease HII [Thermo... 45 0.002
gi|38234094|ref|NP_939861.1| ribonuclease HII [Corynebacterium d... 45 0.003
gi|15828771|ref|NP_326131.1| RIBONUCLEASE HII (RNASE HII) [Mycop... 45 0.003
gi|15837643|ref|NP_298331.1| ribonuclease HII [Xylella fastidios... 45 0.003
gi|42783728|ref|NP_980975.1| ribonuclease HIII [Bacillus cereus ... 45 0.003
gi|21402599|ref|NP_658584.1| RNase_HII, Ribonuclease HII [Bacill... 45 0.003
gi|17231824|ref|NP_488372.1| ribonuclease HII [Nostoc sp. PCC 71... 45 0.003
gi|15612308|ref|NP_223961.1| RIBONUCLEASE HII [Helicobacter pylo... 44 0.004
gi|13476167|ref|NP_107737.1| ribonuclease HII [Mesorhizobium lot... 44 0.004
gi|30022631|ref|NP_834262.1| Ribonuclease HII [Bacillus cereus A... 44 0.005
gi|15606955|ref|NP_214337.1| RNase HII [Aquifex aeolicus VF5] >g... 44 0.005
gi|46141666|ref|ZP_00146996.2| COG0164: Ribonuclease HII [Psychr... 44 0.005
gi|15806947|ref|NP_295672.1| ribonuclease HII [Deinococcus radio... 44 0.006
gi|15604075|ref|NP_220590.1| RIBONUCLEASE HII (rnhB) [Rickettsia... 43 0.008
gi|46308195|ref|ZP_00210390.1| COG0164: Ribonuclease HII [Ehrlic... 43 0.008
gi|15594392|ref|NP_212180.1| ribonuclease H (rnhB) [Borrelia bur... 43 0.008
gi|46201021|ref|ZP_00055903.2| COG0164: Ribonuclease HII [Magnet... 43 0.011
gi|11387098|sp|Q50412|RNH2_MAGSA Ribonuclease HII (RNase HII) >g... 43 0.011
gi|27382791|ref|NP_774320.1| blr7680 [Bradyrhizobium japonicum U... 43 0.011
gi|46579247|ref|YP_010055.1| ribonuclease HII [Desulfovibrio vul... 43 0.011
gi|49485978|ref|YP_043199.1| putative ribonuclease [Staphylococc... 43 0.011
gi|49483303|ref|YP_040527.1| putative ribonuclease [Staphylococc... 43 0.011
gi|21282752|ref|NP_645840.1| ORFID:MW1023~hypothetical protein, ... 43 0.011
gi|31794078|ref|NP_856571.1| PROBABLE RIBONUCLEASE HII PROTEIN R... 42 0.014
gi|15610039|ref|NP_217418.1| rnhB [Mycobacterium tuberculosis H3... 42 0.014
gi|21675069|ref|NP_663134.1| ribonuclease HII [Chlorobium tepidu... 42 0.014
gi|48853680|ref|ZP_00307847.1| COG0164: Ribonuclease HII [Cytoph... 42 0.014
gi|27467751|ref|NP_764388.1| putative ribonuclease HIII [Staphyl... 42 0.014
gi|15924130|ref|NP_371664.1| hypothetical protein SAV1140 [Staph... 42 0.014
gi|22958890|ref|ZP_00006552.1| COG0164: Ribonuclease HII [Rhodob... 42 0.018
gi|1694784|emb|CAA60867.1| rnhB [Haemophilus influenzae] 42 0.018
gi|41409068|ref|NP_961904.1| RnhB [Mycobacterium avium subsp. pa... 42 0.018
gi|45532151|ref|ZP_00183166.1| COG1039: Ribonuclease HIII [Exigu... 42 0.024
gi|23125146|ref|ZP_00107093.1| COG0164: Ribonuclease HII [Nostoc... 42 0.024
gi|46190774|ref|ZP_00121089.2| COG0164: Ribonuclease HII [Bifido... 41 0.031
gi|23464878|ref|NP_695481.1| probable ribonuclease HII [Bifidoba... 41 0.031
gi|29348821|ref|NP_812324.1| ribonuclease HII [Bacteroides theta... 41 0.031
gi|48766250|ref|ZP_00270800.1| COG0164: Ribonuclease HII [Rhodos... 41 0.031
gi|16124634|ref|NP_419198.1| ribonuclease HII [Caulobacter cresc... 41 0.041
gi|39932425|sp|Q8NNZ4|RNH2_CORGL Ribonuclease HII (RNase HII) >g... 41 0.041
gi|19553236|ref|NP_601238.1| ribonuclease HII [Corynebacterium g... 41 0.041
gi|32030411|ref|ZP_00133267.1| COG0164: Ribonuclease HII [Haemop... 41 0.041
gi|33241107|ref|NP_876049.1| Ribonuclease HII [Prochlorococcus m... 40 0.054
gi|34558029|ref|NP_907844.1| RIBONUCLEASE HII RNASE HII [Wolinel... 40 0.070
gi|11037308|gb|AAG27546.1| constans-like protein [Brassica nigra] 40 0.070
gi|15645936|ref|NP_208115.1| ribonuclease HII (rnhB) [Helicobact... 40 0.091
gi|22298205|ref|NP_681452.1| ribonuclease H [Thermosynechococcus... 39 0.12
gi|37521076|ref|NP_924453.1| ribonuclease H [Gloeobacter violace... 39 0.16
gi|48865023|ref|ZP_00318890.1| COG0164: Ribonuclease HII [Oenoco... 39 0.16
gi|46203286|ref|ZP_00051740.2| COG0164: Ribonuclease HII [Magnet... 39 0.16
gi|5825611|gb|AAD53318.1| ribonuclease HII [Trypanosoma brucei r... 39 0.16
gi|46446313|ref|YP_007678.1| putative ribonuclease HII [Parachla... 39 0.20
gi|46200090|ref|YP_005757.1| ribonuclease HII [Thermus thermophi... 39 0.20
gi|24380229|ref|NP_722184.1| putative ribonuclease [Streptococcu... 39 0.20
gi|23475089|ref|ZP_00130379.1| COG0164: Ribonuclease HII [Desulf... 38 0.27
gi|47522551|dbj|BAD20196.1| ribonuclease HIII [Geobacillus stear... 38 0.27
gi|39932283|sp|Q7U4C6|RNH2_SYNPX Ribonuclease HII (RNase HII) 38 0.27
gi|33866676|ref|NP_898235.1| ribonuclease HII [Synechococcus sp.... 38 0.27
gi|15827847|ref|NP_302110.1| ribonuclease HII [Mycobacterium lep... 38 0.35
gi|15674239|ref|NP_268414.1| ribonuclease HII [Lactococcus lacti... 37 0.45
gi|42560965|ref|NP_975416.1| ribonuclease H II [Mycoplasma mycoi... 37 0.45
gi|16079914|ref|NP_390740.1| ribonuclease HIII [Bacillus subtili... 37 0.45
gi|47459459|ref|YP_016321.1| ribonuclease HII [Mycoplasma mobile... 37 0.59
gi|34540527|ref|NP_905006.1| ribonuclease HII [Porphyromonas gin... 37 0.77
gi|13357958|ref|NP_078232.1| ribonuclease HII [Ureaplasma parvum... 37 0.77
gi|33864055|ref|NP_895615.1| Ribonuclease HII and HIII [Prochlor... 37 0.77
gi|47458958|ref|YP_015820.1| ribonuclease HII [Mycoplasma mobile... 36 1.0
gi|16930798|gb|AAL32059.1| ribonuclease HII [Leishmania major] 36 1.0
gi|18042143|gb|AAL57850.1| ribonuclease HII [Leishmania donovani] 36 1.0
gi|15834896|ref|NP_296655.1| ribonuclease HII [Chlamydia muridar... 36 1.3
gi|27436959|ref|NP_055935.2| ALMS1 [Homo sapiens] 35 1.7
gi|20067381|emb|CAD10391.2| ALMS1 protein [Homo sapiens] 35 1.7
gi|15606830|ref|NP_214210.1| hypothetical protein aq_1768 [Aquif... 35 1.7
gi|26554469|ref|NP_758403.1| ribonuclease HII [Mycoplasma penetr... 35 1.7
gi|46362954|ref|ZP_00225760.1| COG0164: Ribonuclease HII [Kineoc... 35 2.9
gi|22994261|ref|ZP_00038772.1| COG0644: Dehydrogenases (flavopro... 35 2.9
gi|22996326|ref|ZP_00040586.1| COG0644: Dehydrogenases (flavopro... 34 3.8
gi|28198459|ref|NP_778773.1| electron transfer flavoprotein ubiq... 34 3.8
gi|29840058|ref|NP_829164.1| ribonuclease HIII [Chlamydophila ca... 34 3.8
gi|25028481|ref|NP_738535.1| putative ribonuclease HII [Coryneba... 34 5.0
gi|21230105|ref|NP_636022.1| flavoprotein-ubiquinone oxidoreduct... 34 5.0
gi|15837899|ref|NP_298587.1| electron transfer flavoprotein ubiq... 33 6.5
gi|48097842|ref|XP_391957.1| similar to CG6621-PA [Apis mellifera] 33 6.5
gi|47214251|emb|CAG01928.1| unnamed protein product [Tetraodon n... 33 6.5
gi|22973756|ref|ZP_00020265.1| hypothetical protein [Chloroflexu... 33 8.6
gi|49065410|emb|CAG38523.1| SARA1 [Homo sapiens] 33 8.6
gi|48857212|ref|ZP_00311245.1| hypothetical protein Chte02003598... 33 8.6
gi|21244300|ref|NP_643882.1| flavoprotein-ubiquinone oxidoreduct... 33 8.6
>gi|17536263|ref|NP_495796.1| RiboNuclease H (33.2 kD) (rnh-2)
[Caenorhabditis elegans]
gi|11387113|sp|Q9U6P6|RNHL_CAEEL Ribonuclease HI large subunit
(RNase HI large subunit) (RNase H(35))
gi|6010657|gb|AAF01208.1| putative ribonuclease H2 large subunit
[Caenorhabditis elegans]
gi|15718212|emb|CAC70103.1| C. elegans RNH-2 protein (corresponding
sequence T13H5.7) [Caenorhabditis elegans]
Length = 297
Score = 599 bits (1544), Expect = e-170
Identities = 297/297 (100%), Positives = 297/297 (100%)
Frame = +1
Query: 1 MSLKCETERSKTWNNFGNGIPCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDD 180
MSLKCETERSKTWNNFGNGIPCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDD
Sbjct: 1 MSLKCETERSKTWNNFGNGIPCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDD 60
Query: 181 SKALNEAKREEIFNKMNEDEDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAIT 360
SKALNEAKREEIFNKMNEDEDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAIT
Sbjct: 61 SKALNEAKREEIFNKMNEDEDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAIT 120
Query: 361 LIRDALACNVNVVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAK 540
LIRDALACNVNVVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAK
Sbjct: 121 LIRDALACNVNVVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAK 180
Query: 541 VTRDSRLRNWQFREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTAS 720
VTRDSRLRNWQFREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTAS
Sbjct: 181 VTRDSRLRNWQFREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTAS 240
Query: 721 TIVEKRCVPGSWEDDEEEGKSQSKRMTSWMVPKNETEVVPKRNVYFKERHMSNILTF 891
TIVEKRCVPGSWEDDEEEGKSQSKRMTSWMVPKNETEVVPKRNVYFKERHMSNILTF
Sbjct: 241 TIVEKRCVPGSWEDDEEEGKSQSKRMTSWMVPKNETEVVPKRNVYFKERHMSNILTF 297