Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= T20F5_2
         (1110 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17509095|ref|NP_491262.1| ribosome factor like (1E478) [Caeno...   607   e-172
gi|39586286|emb|CAE66697.1| Hypothetical protein CBG12038 [Caeno...   288   2e-76
gi|50757135|ref|XP_415395.1| PREDICTED: similar to mitochondrial...    75   2e-12
gi|24661488|ref|NP_648302.2| CG4447-PA [Drosophila melanogaster]...    75   3e-12
gi|17861680|gb|AAL39317.1| GH21184p [Drosophila melanogaster]          74   6e-12
gi|31199993|ref|XP_308944.1| ENSANGP00000012806 [Anopheles gambi...    71   5e-11
gi|50345004|ref|NP_001002174.1| zgc:91914 [Danio rerio] >gnl|BL_...    67   1e-09
gi|46198814|ref|YP_004481.1| ribosome recycling factor (rrf) [Th...    63   1e-08
gi|48856009|ref|ZP_00310167.1| COG0233: Ribosome recycling facto...    57   6e-07
gi|39932026|sp|Q7MTP6|RRF_PORGI Ribosome recycling factor (Ribos...    54   5e-06
gi|37519857|ref|NP_923234.1| ribosome releasing factor [Gloeobac...    54   5e-06
gi|34556750|ref|NP_906565.1| RIBOSOME RECYCLING FACTOR [Wolinell...    54   7e-06
gi|15614987|ref|NP_243290.1| ribosome recycling factor [Bacillus...    54   9e-06
gi|17228703|ref|NP_485251.1| ribosome recycling factor [Nostoc s...    54   9e-06
gi|22297803|ref|NP_681050.1| ribosome releasing factor [Thermosy...    54   9e-06
gi|39932075|sp|Q7UTH0|RRF_RHOBA Ribosome recycling factor (Ribos...    53   1e-05
gi|32472787|ref|NP_865781.1| Ribosome recycling factor [Pirellul...    53   1e-05
gi|50876046|emb|CAG35886.1| probable ribosome recycling factor [...    53   1e-05
gi|34541507|ref|NP_905986.1| ribosome recycling factor [Porphyro...    52   2e-05
gi|16331151|ref|NP_441879.1| ribosome releasing factor [Synechoc...    52   2e-05
gi|29654680|ref|NP_820372.1| ribosome recycling factor [Coxiella...    51   4e-05
gi|16126163|ref|NP_420727.1| ribosome recycling factor [Caulobac...    51   4e-05
gi|33866285|ref|NP_897844.1| ribosome recycling factor protein R...    51   6e-05
gi|23475058|ref|ZP_00130348.1| COG0233: Ribosome recycling facto...    50   7e-05
gi|21242171|ref|NP_641753.1| ribosome recycling factor [Xanthomo...    50   7e-05
gi|15673991|ref|NP_268166.1| ribosome recycling factor [Lactococ...    50   7e-05
gi|19553226|ref|NP_601228.1| ribosome recycling factor [Coryneba...    50   7e-05
gi|45507626|ref|ZP_00159969.1| COG0233: Ribosome recycling facto...    50   7e-05
gi|21674395|ref|NP_662460.1| ribosome recycling factor [Chlorobi...    50   9e-05
gi|24215994|ref|NP_713475.1| ribosome recycling factor [Leptospi...    50   9e-05
gi|34762371|ref|ZP_00143373.1| Ribosome Recycling Factor (RRF) [...    50   9e-05
gi|48764613|ref|ZP_00269164.1| COG0233: Ribosome recycling facto...    50   9e-05
gi|21230827|ref|NP_636744.1| ribosome recycling factor [Xanthomo...    50   1e-04
gi|48846010|ref|ZP_00300278.1| COG0233: Ribosome recycling facto...    49   2e-04
gi|37926485|pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of...    49   2e-04
gi|15799854|ref|NP_285866.1| ribosome releasing factor [Escheric...    49   2e-04
gi|20807853|ref|NP_623024.1| Ribosome recycling factor [Thermoan...    49   2e-04
gi|42527846|ref|NP_972944.1| ribosome recycling factor [Treponem...    49   2e-04
gi|32400999|gb|AAP80705.1| ribosome recycling factor [Griffithsi...    49   2e-04
gi|23126085|ref|ZP_00107992.1| COG0233: Ribosome recycling facto...    49   2e-04
gi|27379969|ref|NP_771498.1| ribosome recycling factor [Bradyrhi...    49   3e-04
gi|7388105|sp|P82231|RRF_SPIOL Ribosome recycling factor, chloro...    48   4e-04
gi|46579283|ref|YP_010091.1| ribosome recycling factor [Desulfov...    48   4e-04
gi|37498991|gb|AAQ91586.1| ribosome recycling factor [Helicobact...    48   4e-04
gi|48474737|sp|Q8VS52|RRF_LACRE Ribosome recycling factor (Ribos...    48   5e-04
gi|39935984|ref|NP_948260.1| ribosome releasing factor [Rhodopse...    48   5e-04
gi|33863513|ref|NP_895073.1| Ribosome recycling factor [Prochlor...    48   5e-04
gi|32034388|ref|ZP_00134578.1| COG0233: Ribosome recycling facto...    47   6e-04
gi|15610019|ref|NP_217398.1| frr [Mycobacterium tuberculosis H37...    47   6e-04
gi|33861078|ref|NP_892639.1| Ribosome recycling factor [Prochlor...    47   6e-04
gi|46202355|ref|ZP_00053346.2| COG0233: Ribosome recycling facto...    47   6e-04
gi|45532589|ref|ZP_00183592.1| COG0233: Ribosome recycling facto...    47   8e-04
gi|46117840|ref|ZP_00174326.2| COG0233: Ribosome recycling facto...    47   8e-04
gi|7404451|sp|P37706|RRF_DAUCA Ribosome recycling factor, chloro...    47   8e-04
gi|28899089|ref|NP_798694.1| ribosome recycling factor [Vibrio p...    47   0.001
gi|16803354|ref|NP_464839.1| highly similar to ribosome recyclin...    47   0.001
gi|39997016|ref|NP_952967.1| ribosome recycling factor [Geobacte...    47   0.001
gi|16800419|ref|NP_470687.1| highly similar to ribosome recyclin...    46   0.001
gi|23099044|ref|NP_692510.1| ribosome recycling factor [Oceanoba...    46   0.001
gi|15645870|ref|NP_208048.1| ribosome releasing factor (frr) [He...    46   0.001
gi|15837653|ref|NP_298341.1| ribosome recycling factor [Xylella ...    46   0.001
gi|46914520|emb|CAG21299.1| putative ribosome recycling factor [...    46   0.001
gi|18412657|ref|NP_567141.1| ribosome recycling factor, chloropl...    46   0.001
gi|25028466|ref|NP_738520.1| putative ribosome recycling factor ...    46   0.002
gi|49234937|ref|ZP_00329018.1| COG0233: Ribosome recycling facto...    46   0.002
gi|16759209|ref|NP_454826.1| ribosome recycling factor [Salmonel...    46   0.002
gi|15639592|ref|NP_219042.1| ribosome recycling factor [Treponem...    46   0.002
gi|22996834|ref|ZP_00041077.1| COG0233: Ribosome recycling facto...    46   0.002
gi|19704944|ref|NP_602439.1| Ribosome Recycling Factor (RRF) [Fu...    46   0.002
gi|23467086|ref|ZP_00122671.1| COG0233: Ribosome recycling facto...    45   0.002
gi|37680738|ref|NP_935347.1| ribosome recycling factor [Vibrio v...    45   0.002
gi|29376892|ref|NP_816046.1| ribosome recycling factor [Enteroco...    45   0.002
gi|28198252|ref|NP_778566.1| ribosome recycling factor [Xylella ...    45   0.002
gi|22993912|ref|ZP_00038448.1| COG0233: Ribosome recycling facto...    45   0.002
gi|33239972|ref|NP_874914.1| Ribosome recycling factor [Prochlor...    45   0.002
gi|24373200|ref|NP_717243.1| ribosome recycling factor [Shewanel...    45   0.003
gi|13508375|ref|NP_110325.1| ribosome releasing factor [Mycoplas...    45   0.003
gi|27467853|ref|NP_764490.1| ribosome recycling factor [Staphylo...    45   0.003
gi|48474234|sp|Q8L1H5|RRF_PARZE Ribosome recycling factor (Ribos...    45   0.003
gi|15603852|ref|NP_246926.1| Errf [Pasteurella multocida Pm70] >...    45   0.004
gi|15642255|ref|NP_231888.1| ribosome recycling factor [Vibrio c...    45   0.004
gi|15612242|ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME...    45   0.004
gi|15606111|ref|NP_213488.1| ribosome recycling factor [Aquifex ...    45   0.004
gi|34394208|dbj|BAC84660.1| putative Ribosome recycling factor, ...    45   0.004
gi|23466062|ref|NP_696665.1| ribosome recycling factor [Bifidoba...    44   0.005
gi|46106257|ref|ZP_00186848.2| COG0233: Ribosome recycling facto...    44   0.007
gi|16078715|ref|NP_389534.1| ribosome recycling factor [Bacillus...    44   0.009
gi|23002918|ref|ZP_00046590.1| COG0233: Ribosome recycling facto...    44   0.009
gi|45915537|ref|ZP_00194226.2| COG0233: Ribosome recycling facto...    43   0.012
gi|42519369|ref|NP_965299.1| ribosome recycling factor [Lactobac...    43   0.015
gi|29347659|ref|NP_811162.1| ribosome recycling factor (ribosome...    43   0.015
gi|48867867|ref|ZP_00321290.1| COG0233: Ribosome recycling facto...    42   0.020
gi|48768192|ref|ZP_00272543.1| COG0233: Ribosome recycling facto...    42   0.020
gi|50543588|ref|XP_499960.1| hypothetical protein [Yarrowia lipo...    42   0.026
gi|629661|pir||S32716 ribosome releasing factor - carrot >gnl|BL...    42   0.026
gi|11277801|pir||T48108 hypothetical protein F16M2.40 - Arabidop...    42   0.034
gi|45511853|ref|ZP_00163420.1| COG0233: Ribosome recycling facto...    42   0.034
gi|42631125|ref|ZP_00156663.1| COG0233: Ribosome recycling facto...    40   0.075
gi|42630364|ref|ZP_00155908.1| COG0233: Ribosome recycling facto...    40   0.075
gi|34497654|ref|NP_901869.1| ribosome recycling factor [Chromoba...    40   0.075
gi|50119974|ref|YP_049141.1| ribosome recycling factor [Erwinia ...    40   0.075
gi|16272749|ref|NP_438968.1| ribosome releasing factor [Haemophi...    40   0.098
gi|48892230|ref|ZP_00325628.1| COG0233: Ribosome recycling facto...    40   0.098
gi|41150991|ref|XP_371164.1| NYD-SP11 protein [Homo sapiens]           40   0.13
gi|17546126|ref|NP_519528.1| PROBABLE RIBOSOME RECYCLING FACTOR ...    39   0.17
gi|45184750|ref|NP_982468.1| AAL074Cp [Eremothecium gossypii] >g...    39   0.17
gi|27367919|ref|NP_763446.1| Membrane-fusion protein [Vibrio vul...    38   0.37
gi|37676046|ref|NP_936442.1| membrane-fusion protein [Vibrio vul...    38   0.37
gi|21740669|emb|CAD41132.1| OSJNBa0084K20.10 [Oryza sativa (japo...    38   0.37
gi|15834673|ref|NP_296432.1| ribosome recycling factor [Chlamydi...    37   0.63
gi|34858304|ref|XP_342735.1| similar to Postreplication repair p...    37   0.63
gi|42520392|ref|NP_966307.1| ribosome recycling factor [Wolbachi...    37   0.83
gi|37524676|ref|NP_928020.1| ribosome releasing factor [Photorha...    36   1.8
gi|42453350|ref|ZP_00153257.1| hypothetical protein Rick018801 [...    36   1.8
gi|15605410|ref|NP_220196.1| Ribosome Releasing Factor [Chlamydi...    36   1.8
gi|34877946|ref|XP_237588.2| similar to KIAA0874 protein [Rattus...    35   3.1
gi|50258475|gb|EAL21164.1| hypothetical protein CNBD5400 [Crypto...    35   4.1
gi|20806964|ref|NP_622135.1| Methenyl tetrahydrofolate cyclohydr...    34   5.4
gi|15892120|ref|NP_359834.1| ribosome recycling factor [Ricketts...    34   5.4
gi|46447510|ref|YP_008875.1| putative ribosome recycling factor ...    34   5.4
gi|48852252|ref|ZP_00306441.1| COG0675: Transposase and inactiva...    34   5.4
gi|34580849|ref|ZP_00142329.1| ribosome recycling factor [Ricket...    34   7.0
gi|20160905|dbj|BAB89842.1| putative ubiquitin carboxyl-terminal...    34   7.0
gi|34909932|ref|NP_916313.1| putative ubiquitin carboxyl-termina...    34   7.0
gi|42519054|ref|NP_964984.1| hypothetical protein LJ1128 [Lactob...    34   7.0
gi|48478393|ref|YP_024099.1| hypothetical protein PTO1321 [Picro...    34   7.0
gi|50878023|emb|CAG37879.1| probable conjugal transfer protein T...    34   7.0
gi|30249677|ref|NP_841747.1| Ribosome recycling factor [Nitrosom...    33   9.1
gi|33240971|ref|NP_875913.1| Gamma-glutamyltransferase [Prochlor...    33   9.1
gi|50738301|ref|XP_419285.1| PREDICTED: hypothetical protein XP_...    33   9.1
gi|15226723|ref|NP_179222.1| expressed protein [Arabidopsis thal...    33   9.1


>gi|17509095|ref|NP_491262.1| ribosome factor like (1E478)
            [Caenorhabditis elegans]
 gi|3123156|sp|P91478|YOK3_CAEEL Hypothetical 41.7 kDa protein T20F5.3
            in chromosome I
 gi|7508070|pir||T29207 hypothetical protein T20F5.3 - Caenorhabditis
            elegans
 gi|1703616|gb|AAB37664.1| Hypothetical protein T20F5.3
            [Caenorhabditis elegans]
          Length = 369

 Score =  607 bits (1564), Expect = e-172
 Identities = 325/369 (88%), Positives = 325/369 (88%)
 Frame = -1

Query: 1110 MMAESVQPTGRAVRRLEPLAIEIPGEPEPSNSYDAFCDRHFSAENMETKTKXXXXXXXXX 931
            MMAESVQPTGRAVRRLEPLAIEIPGEPEPSNSYDAFCDRHFSAENMETKTK
Sbjct: 1    MMAESVQPTGRAVRRLEPLAIEIPGEPEPSNSYDAFCDRHFSAENMETKTKIYISLLLIL 60

Query: 930  XXXXXXLVVINFPNPKRVHVEPFETPTVLNIXXXXXXXXXXXEYAQAFELAVKNDQLVLP 751
                  LVVINFPNPKRVHVEPFETPTVLNI           EYAQAFELAVKNDQLVLP
Sbjct: 61   PSLIYFLVVINFPNPKRVHVEPFETPTVLNITTFSEETLSTEEYAQAFELAVKNDQLVLP 120

Query: 750  TGVSRFVMGNLMIRLAVIRLAQGASRAQFLQKQAQIFTSXXXXXXXXXXXXXXXXXXVFS 571
            TGVSRFVMGNLMIRLAVIRLAQGASRAQFLQKQAQIFTS                  VFS
Sbjct: 121  TGVSRFVMGNLMIRLAVIRLAQGASRAQFLQKQAQIFTSAVVNAKKKADNKKKNPPAVFS 180

Query: 570  NLEENAVVQETIKEIQRVEGLLVEELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARV 391
            NLEENAVVQETIKEIQRVEGLLVEELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARV
Sbjct: 181  NLEENAVVQETIKEIQRVEGLLVEELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARV 240

Query: 390  TLKSPLMIMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKMASD 211
            TLKSPLMIMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKMASD
Sbjct: 241  TLKSPLMIMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKMASD 300

Query: 210  AKGRILNEYKKAINEIYSKSDKKSSNEFSTRPDEAKKTREALLNMKHAAEQRGGLLIEER 31
            AKGRILNEYKKAINEIYSKSDKKSSNEFSTRPDEAKKTREALLNMKHAAEQRGGLLIEER
Sbjct: 301  AKGRILNEYKKAINEIYSKSDKKSSNEFSTRPDEAKKTREALLNMKHAAEQRGGLLIEER 360

Query: 30   RKQLLKQVV 4
            RKQLLKQVV
Sbjct: 361  RKQLLKQVV 369




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