Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= T20F5_2
(1110 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17509095|ref|NP_491262.1| ribosome factor like (1E478) [Caeno... 607 e-172
gi|39586286|emb|CAE66697.1| Hypothetical protein CBG12038 [Caeno... 288 2e-76
gi|50757135|ref|XP_415395.1| PREDICTED: similar to mitochondrial... 75 2e-12
gi|24661488|ref|NP_648302.2| CG4447-PA [Drosophila melanogaster]... 75 3e-12
gi|17861680|gb|AAL39317.1| GH21184p [Drosophila melanogaster] 74 6e-12
gi|31199993|ref|XP_308944.1| ENSANGP00000012806 [Anopheles gambi... 71 5e-11
gi|50345004|ref|NP_001002174.1| zgc:91914 [Danio rerio] >gnl|BL_... 67 1e-09
gi|46198814|ref|YP_004481.1| ribosome recycling factor (rrf) [Th... 63 1e-08
gi|48856009|ref|ZP_00310167.1| COG0233: Ribosome recycling facto... 57 6e-07
gi|39932026|sp|Q7MTP6|RRF_PORGI Ribosome recycling factor (Ribos... 54 5e-06
gi|37519857|ref|NP_923234.1| ribosome releasing factor [Gloeobac... 54 5e-06
gi|34556750|ref|NP_906565.1| RIBOSOME RECYCLING FACTOR [Wolinell... 54 7e-06
gi|15614987|ref|NP_243290.1| ribosome recycling factor [Bacillus... 54 9e-06
gi|17228703|ref|NP_485251.1| ribosome recycling factor [Nostoc s... 54 9e-06
gi|22297803|ref|NP_681050.1| ribosome releasing factor [Thermosy... 54 9e-06
gi|39932075|sp|Q7UTH0|RRF_RHOBA Ribosome recycling factor (Ribos... 53 1e-05
gi|32472787|ref|NP_865781.1| Ribosome recycling factor [Pirellul... 53 1e-05
gi|50876046|emb|CAG35886.1| probable ribosome recycling factor [... 53 1e-05
gi|34541507|ref|NP_905986.1| ribosome recycling factor [Porphyro... 52 2e-05
gi|16331151|ref|NP_441879.1| ribosome releasing factor [Synechoc... 52 2e-05
gi|29654680|ref|NP_820372.1| ribosome recycling factor [Coxiella... 51 4e-05
gi|16126163|ref|NP_420727.1| ribosome recycling factor [Caulobac... 51 4e-05
gi|33866285|ref|NP_897844.1| ribosome recycling factor protein R... 51 6e-05
gi|23475058|ref|ZP_00130348.1| COG0233: Ribosome recycling facto... 50 7e-05
gi|21242171|ref|NP_641753.1| ribosome recycling factor [Xanthomo... 50 7e-05
gi|15673991|ref|NP_268166.1| ribosome recycling factor [Lactococ... 50 7e-05
gi|19553226|ref|NP_601228.1| ribosome recycling factor [Coryneba... 50 7e-05
gi|45507626|ref|ZP_00159969.1| COG0233: Ribosome recycling facto... 50 7e-05
gi|21674395|ref|NP_662460.1| ribosome recycling factor [Chlorobi... 50 9e-05
gi|24215994|ref|NP_713475.1| ribosome recycling factor [Leptospi... 50 9e-05
gi|34762371|ref|ZP_00143373.1| Ribosome Recycling Factor (RRF) [... 50 9e-05
gi|48764613|ref|ZP_00269164.1| COG0233: Ribosome recycling facto... 50 9e-05
gi|21230827|ref|NP_636744.1| ribosome recycling factor [Xanthomo... 50 1e-04
gi|48846010|ref|ZP_00300278.1| COG0233: Ribosome recycling facto... 49 2e-04
gi|37926485|pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of... 49 2e-04
gi|15799854|ref|NP_285866.1| ribosome releasing factor [Escheric... 49 2e-04
gi|20807853|ref|NP_623024.1| Ribosome recycling factor [Thermoan... 49 2e-04
gi|42527846|ref|NP_972944.1| ribosome recycling factor [Treponem... 49 2e-04
gi|32400999|gb|AAP80705.1| ribosome recycling factor [Griffithsi... 49 2e-04
gi|23126085|ref|ZP_00107992.1| COG0233: Ribosome recycling facto... 49 2e-04
gi|27379969|ref|NP_771498.1| ribosome recycling factor [Bradyrhi... 49 3e-04
gi|7388105|sp|P82231|RRF_SPIOL Ribosome recycling factor, chloro... 48 4e-04
gi|46579283|ref|YP_010091.1| ribosome recycling factor [Desulfov... 48 4e-04
gi|37498991|gb|AAQ91586.1| ribosome recycling factor [Helicobact... 48 4e-04
gi|48474737|sp|Q8VS52|RRF_LACRE Ribosome recycling factor (Ribos... 48 5e-04
gi|39935984|ref|NP_948260.1| ribosome releasing factor [Rhodopse... 48 5e-04
gi|33863513|ref|NP_895073.1| Ribosome recycling factor [Prochlor... 48 5e-04
gi|32034388|ref|ZP_00134578.1| COG0233: Ribosome recycling facto... 47 6e-04
gi|15610019|ref|NP_217398.1| frr [Mycobacterium tuberculosis H37... 47 6e-04
gi|33861078|ref|NP_892639.1| Ribosome recycling factor [Prochlor... 47 6e-04
gi|46202355|ref|ZP_00053346.2| COG0233: Ribosome recycling facto... 47 6e-04
gi|45532589|ref|ZP_00183592.1| COG0233: Ribosome recycling facto... 47 8e-04
gi|46117840|ref|ZP_00174326.2| COG0233: Ribosome recycling facto... 47 8e-04
gi|7404451|sp|P37706|RRF_DAUCA Ribosome recycling factor, chloro... 47 8e-04
gi|28899089|ref|NP_798694.1| ribosome recycling factor [Vibrio p... 47 0.001
gi|16803354|ref|NP_464839.1| highly similar to ribosome recyclin... 47 0.001
gi|39997016|ref|NP_952967.1| ribosome recycling factor [Geobacte... 47 0.001
gi|16800419|ref|NP_470687.1| highly similar to ribosome recyclin... 46 0.001
gi|23099044|ref|NP_692510.1| ribosome recycling factor [Oceanoba... 46 0.001
gi|15645870|ref|NP_208048.1| ribosome releasing factor (frr) [He... 46 0.001
gi|15837653|ref|NP_298341.1| ribosome recycling factor [Xylella ... 46 0.001
gi|46914520|emb|CAG21299.1| putative ribosome recycling factor [... 46 0.001
gi|18412657|ref|NP_567141.1| ribosome recycling factor, chloropl... 46 0.001
gi|25028466|ref|NP_738520.1| putative ribosome recycling factor ... 46 0.002
gi|49234937|ref|ZP_00329018.1| COG0233: Ribosome recycling facto... 46 0.002
gi|16759209|ref|NP_454826.1| ribosome recycling factor [Salmonel... 46 0.002
gi|15639592|ref|NP_219042.1| ribosome recycling factor [Treponem... 46 0.002
gi|22996834|ref|ZP_00041077.1| COG0233: Ribosome recycling facto... 46 0.002
gi|19704944|ref|NP_602439.1| Ribosome Recycling Factor (RRF) [Fu... 46 0.002
gi|23467086|ref|ZP_00122671.1| COG0233: Ribosome recycling facto... 45 0.002
gi|37680738|ref|NP_935347.1| ribosome recycling factor [Vibrio v... 45 0.002
gi|29376892|ref|NP_816046.1| ribosome recycling factor [Enteroco... 45 0.002
gi|28198252|ref|NP_778566.1| ribosome recycling factor [Xylella ... 45 0.002
gi|22993912|ref|ZP_00038448.1| COG0233: Ribosome recycling facto... 45 0.002
gi|33239972|ref|NP_874914.1| Ribosome recycling factor [Prochlor... 45 0.002
gi|24373200|ref|NP_717243.1| ribosome recycling factor [Shewanel... 45 0.003
gi|13508375|ref|NP_110325.1| ribosome releasing factor [Mycoplas... 45 0.003
gi|27467853|ref|NP_764490.1| ribosome recycling factor [Staphylo... 45 0.003
gi|48474234|sp|Q8L1H5|RRF_PARZE Ribosome recycling factor (Ribos... 45 0.003
gi|15603852|ref|NP_246926.1| Errf [Pasteurella multocida Pm70] >... 45 0.004
gi|15642255|ref|NP_231888.1| ribosome recycling factor [Vibrio c... 45 0.004
gi|15612242|ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME... 45 0.004
gi|15606111|ref|NP_213488.1| ribosome recycling factor [Aquifex ... 45 0.004
gi|34394208|dbj|BAC84660.1| putative Ribosome recycling factor, ... 45 0.004
gi|23466062|ref|NP_696665.1| ribosome recycling factor [Bifidoba... 44 0.005
gi|46106257|ref|ZP_00186848.2| COG0233: Ribosome recycling facto... 44 0.007
gi|16078715|ref|NP_389534.1| ribosome recycling factor [Bacillus... 44 0.009
gi|23002918|ref|ZP_00046590.1| COG0233: Ribosome recycling facto... 44 0.009
gi|45915537|ref|ZP_00194226.2| COG0233: Ribosome recycling facto... 43 0.012
gi|42519369|ref|NP_965299.1| ribosome recycling factor [Lactobac... 43 0.015
gi|29347659|ref|NP_811162.1| ribosome recycling factor (ribosome... 43 0.015
gi|48867867|ref|ZP_00321290.1| COG0233: Ribosome recycling facto... 42 0.020
gi|48768192|ref|ZP_00272543.1| COG0233: Ribosome recycling facto... 42 0.020
gi|50543588|ref|XP_499960.1| hypothetical protein [Yarrowia lipo... 42 0.026
gi|629661|pir||S32716 ribosome releasing factor - carrot >gnl|BL... 42 0.026
gi|11277801|pir||T48108 hypothetical protein F16M2.40 - Arabidop... 42 0.034
gi|45511853|ref|ZP_00163420.1| COG0233: Ribosome recycling facto... 42 0.034
gi|42631125|ref|ZP_00156663.1| COG0233: Ribosome recycling facto... 40 0.075
gi|42630364|ref|ZP_00155908.1| COG0233: Ribosome recycling facto... 40 0.075
gi|34497654|ref|NP_901869.1| ribosome recycling factor [Chromoba... 40 0.075
gi|50119974|ref|YP_049141.1| ribosome recycling factor [Erwinia ... 40 0.075
gi|16272749|ref|NP_438968.1| ribosome releasing factor [Haemophi... 40 0.098
gi|48892230|ref|ZP_00325628.1| COG0233: Ribosome recycling facto... 40 0.098
gi|41150991|ref|XP_371164.1| NYD-SP11 protein [Homo sapiens] 40 0.13
gi|17546126|ref|NP_519528.1| PROBABLE RIBOSOME RECYCLING FACTOR ... 39 0.17
gi|45184750|ref|NP_982468.1| AAL074Cp [Eremothecium gossypii] >g... 39 0.17
gi|27367919|ref|NP_763446.1| Membrane-fusion protein [Vibrio vul... 38 0.37
gi|37676046|ref|NP_936442.1| membrane-fusion protein [Vibrio vul... 38 0.37
gi|21740669|emb|CAD41132.1| OSJNBa0084K20.10 [Oryza sativa (japo... 38 0.37
gi|15834673|ref|NP_296432.1| ribosome recycling factor [Chlamydi... 37 0.63
gi|34858304|ref|XP_342735.1| similar to Postreplication repair p... 37 0.63
gi|42520392|ref|NP_966307.1| ribosome recycling factor [Wolbachi... 37 0.83
gi|37524676|ref|NP_928020.1| ribosome releasing factor [Photorha... 36 1.8
gi|42453350|ref|ZP_00153257.1| hypothetical protein Rick018801 [... 36 1.8
gi|15605410|ref|NP_220196.1| Ribosome Releasing Factor [Chlamydi... 36 1.8
gi|34877946|ref|XP_237588.2| similar to KIAA0874 protein [Rattus... 35 3.1
gi|50258475|gb|EAL21164.1| hypothetical protein CNBD5400 [Crypto... 35 4.1
gi|20806964|ref|NP_622135.1| Methenyl tetrahydrofolate cyclohydr... 34 5.4
gi|15892120|ref|NP_359834.1| ribosome recycling factor [Ricketts... 34 5.4
gi|46447510|ref|YP_008875.1| putative ribosome recycling factor ... 34 5.4
gi|48852252|ref|ZP_00306441.1| COG0675: Transposase and inactiva... 34 5.4
gi|34580849|ref|ZP_00142329.1| ribosome recycling factor [Ricket... 34 7.0
gi|20160905|dbj|BAB89842.1| putative ubiquitin carboxyl-terminal... 34 7.0
gi|34909932|ref|NP_916313.1| putative ubiquitin carboxyl-termina... 34 7.0
gi|42519054|ref|NP_964984.1| hypothetical protein LJ1128 [Lactob... 34 7.0
gi|48478393|ref|YP_024099.1| hypothetical protein PTO1321 [Picro... 34 7.0
gi|50878023|emb|CAG37879.1| probable conjugal transfer protein T... 34 7.0
gi|30249677|ref|NP_841747.1| Ribosome recycling factor [Nitrosom... 33 9.1
gi|33240971|ref|NP_875913.1| Gamma-glutamyltransferase [Prochlor... 33 9.1
gi|50738301|ref|XP_419285.1| PREDICTED: hypothetical protein XP_... 33 9.1
gi|15226723|ref|NP_179222.1| expressed protein [Arabidopsis thal... 33 9.1
>gi|17509095|ref|NP_491262.1| ribosome factor like (1E478)
[Caenorhabditis elegans]
gi|3123156|sp|P91478|YOK3_CAEEL Hypothetical 41.7 kDa protein T20F5.3
in chromosome I
gi|7508070|pir||T29207 hypothetical protein T20F5.3 - Caenorhabditis
elegans
gi|1703616|gb|AAB37664.1| Hypothetical protein T20F5.3
[Caenorhabditis elegans]
Length = 369
Score = 607 bits (1564), Expect = e-172
Identities = 325/369 (88%), Positives = 325/369 (88%)
Frame = -1
Query: 1110 MMAESVQPTGRAVRRLEPLAIEIPGEPEPSNSYDAFCDRHFSAENMETKTKXXXXXXXXX 931
MMAESVQPTGRAVRRLEPLAIEIPGEPEPSNSYDAFCDRHFSAENMETKTK
Sbjct: 1 MMAESVQPTGRAVRRLEPLAIEIPGEPEPSNSYDAFCDRHFSAENMETKTKIYISLLLIL 60
Query: 930 XXXXXXLVVINFPNPKRVHVEPFETPTVLNIXXXXXXXXXXXEYAQAFELAVKNDQLVLP 751
LVVINFPNPKRVHVEPFETPTVLNI EYAQAFELAVKNDQLVLP
Sbjct: 61 PSLIYFLVVINFPNPKRVHVEPFETPTVLNITTFSEETLSTEEYAQAFELAVKNDQLVLP 120
Query: 750 TGVSRFVMGNLMIRLAVIRLAQGASRAQFLQKQAQIFTSXXXXXXXXXXXXXXXXXXVFS 571
TGVSRFVMGNLMIRLAVIRLAQGASRAQFLQKQAQIFTS VFS
Sbjct: 121 TGVSRFVMGNLMIRLAVIRLAQGASRAQFLQKQAQIFTSAVVNAKKKADNKKKNPPAVFS 180
Query: 570 NLEENAVVQETIKEIQRVEGLLVEELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARV 391
NLEENAVVQETIKEIQRVEGLLVEELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARV
Sbjct: 181 NLEENAVVQETIKEIQRVEGLLVEELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARV 240
Query: 390 TLKSPLMIMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKMASD 211
TLKSPLMIMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKMASD
Sbjct: 241 TLKSPLMIMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKMASD 300
Query: 210 AKGRILNEYKKAINEIYSKSDKKSSNEFSTRPDEAKKTREALLNMKHAAEQRGGLLIEER 31
AKGRILNEYKKAINEIYSKSDKKSSNEFSTRPDEAKKTREALLNMKHAAEQRGGLLIEER
Sbjct: 301 AKGRILNEYKKAINEIYSKSDKKSSNEFSTRPDEAKKTREALLNMKHAAEQRGGLLIEER 360
Query: 30 RKQLLKQVV 4
RKQLLKQVV
Sbjct: 361 RKQLLKQVV 369