Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= T23H2_3
(5544 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17509225|ref|NP_491855.1| nucleoporin 210, Nuclear Pore compl... 3423 0.0
gi|39595690|emb|CAE67193.1| Hypothetical protein CBG12629 [Caeno... 2853 0.0
gi|25151588|ref|NP_741681.1| nucleoporin 210 family member (5T56... 678 0.0
gi|50470812|emb|CAC51060.2| Hypothetical protein Y39B6A.47 [Caen... 576 e-162
gi|27477134|ref|NP_079199.2| nucleoporin 210; nuclear pore membr... 482 e-134
gi|50510697|dbj|BAD32334.1| mKIAA0906 protein [Mus musculus] 472 e-131
gi|9055314|ref|NP_061285.1| nucleoporin 210; nuclear pore membra... 462 e-128
gi|16758020|ref|NP_445774.1| nuclear pore membrane glycoprotein ... 460 e-127
gi|30931086|gb|AAH52468.1| Nup210 protein [Mus musculus] 457 e-126
gi|41117170|ref|XP_036740.5| similar to nucleoporin 210; nuclear... 369 e-100
gi|47223214|emb|CAG11349.1| unnamed protein product [Tetraodon n... 344 2e-92
gi|48103007|ref|XP_395480.1| similar to nucleoporin 210; nuclear... 338 1e-90
gi|45595564|gb|AAH67089.1| NUP210 protein [Homo sapiens] 317 3e-84
gi|50795901|ref|XP_423816.1| PREDICTED: similar to nuclear pore ... 280 3e-73
gi|46409262|ref|NP_997191.1| nuclear pore membrane glycoprotein ... 247 2e-63
gi|12860083|dbj|BAB31846.1| unnamed protein product [Mus musculus] 234 2e-59
gi|34535319|dbj|BAC87279.1| unnamed protein product [Homo sapiens] 199 6e-49
gi|34535157|dbj|BAC87225.1| unnamed protein product [Homo sapiens] 198 1e-48
gi|18676550|dbj|BAB84927.1| FLJ00172 protein [Homo sapiens] 191 1e-46
gi|50754301|ref|XP_414320.1| PREDICTED: similar to Nup210 protei... 182 8e-44
gi|31217012|ref|XP_316344.1| ENSANGP00000004199 [Anopheles gambi... 179 9e-43
gi|34858148|ref|XP_345235.1| similar to hypothetical protein [Ra... 173 5e-41
gi|11993642|gb|AAG42828.1| integral membrane pore glycoprotein g... 172 8e-41
gi|24585893|ref|NP_610184.2| CG7897-PA [Drosophila melanogaster]... 172 8e-41
gi|40215795|gb|AAR82780.1| LD22358p [Drosophila melanogaster] 172 8e-41
gi|4240301|dbj|BAA74929.1| KIAA0906 protein [Homo sapiens] 170 3e-40
gi|21739549|emb|CAD38812.1| hypothetical protein [Homo sapiens] 159 7e-37
gi|38077364|ref|XP_290036.2| similar to nucleoporin 210; nuclear... 151 2e-34
gi|26343443|dbj|BAC35378.1| unnamed protein product [Mus musculus] 147 3e-33
gi|11359980|pir||T43452 hypothetical protein DKFZp434E2118.1 - h... 117 2e-24
gi|10438756|dbj|BAB15332.1| unnamed protein product [Homo sapiens] 87 4e-15
gi|15242716|ref|NP_198864.1| expressed protein [Arabidopsis thal... 83 9e-14
gi|9759492|dbj|BAB10497.1| nuclear pore protein-like [Arabidopsi... 83 9e-14
gi|38074204|ref|XP_355291.1| similar to NICE-3 protein [Mus musc... 51 4e-04
gi|18958225|emb|CAC81930.1| intimin eta [Escherichia coli] 51 4e-04
gi|19387186|gb|AAL87125.1| intimine type epsilon [Escherichia coli] 49 0.001
gi|28195235|gb|AAO27352.1| intimin epsilon [Escherichia coli] 49 0.001
gi|6683770|gb|AAF23359.1| intimin type epsilon [Escherichia coli] 49 0.001
gi|17059556|emb|CAC81727.1| intimin [Escherichia coli] >gnl|BL_O... 49 0.001
gi|47600853|emb|CAG29728.1| intimin epsilon [Escherichia coli] >... 49 0.001
gi|11037701|gb|AAG27704.1| intimin type epsilon [Escherichia coli] 49 0.001
gi|47824770|emb|CAG29232.1| intimin epsilon [Escherichia coli] >... 49 0.001
gi|47550385|emb|CAG29642.1| intimin epsilon [Escherichia coli] >... 49 0.001
gi|47232497|emb|CAG29173.1| intimin xi [Escherichia coli] 49 0.001
gi|48596249|emb|CAG34122.1| intimin xi [Escherichia coli] >gnl|B... 49 0.001
gi|17059530|emb|CAC81714.1| intimin [Escherichia coli] >gnl|BL_O... 49 0.001
gi|48596247|emb|CAG34121.1| intimin xi [Escherichia coli] >gnl|B... 49 0.001
gi|21634404|gb|AAM63404.1| gamma intimin [Escherichia coli] 47 0.004
gi|27525978|emb|CAC81744.1| intimin [Escherichia coli] 47 0.005
gi|11992260|gb|AAG42487.1| intimin type epsilon [Escherichia coli] 47 0.007
gi|49640129|emb|CAG77580.1| intimin sigma [Escherichia coli] 46 0.009
gi|15420372|gb|AAK97362.1| gamma intimin [Escherichia coli] 46 0.009
gi|15800218|ref|NP_286230.1| putative RTX family exoprotein [Esc... 46 0.012
gi|48714777|emb|CAG34270.1| intimin rho [Escherichia coli] >gnl|... 45 0.015
gi|47824774|emb|CAG29234.1| intimin mu [Escherichia coli] 45 0.020
gi|47600890|emb|CAG29781.1| intimin mu [Escherichia coli] >gnl|B... 45 0.020
gi|47232493|emb|CAG29171.1| intimin mu [Escherichia coli] 45 0.020
gi|33341966|emb|CAE18112.1| eae [Escherichia coli] 45 0.020
gi|538254|gb|AAA21468.1| outer membrane protein 45 0.026
gi|33352219|emb|CAE18156.1| gamma1 intimin [Escherichia coli] >g... 45 0.026
gi|30721630|gb|AAP34318.1| intimin [Escherichia coli O157:H7] 45 0.026
gi|41334|emb|CAA77642.1| EHEC attaching and effacing (Eae) prote... 45 0.026
gi|3941714|gb|AAD05501.1| gamma intimin [Escherichia coli] 45 0.026
gi|15804220|ref|NP_290259.1| intimin adherence protein [Escheric... 45 0.026
gi|3941712|gb|AAD05500.1| gamma intimin [Escherichia coli] 45 0.026
gi|47824762|emb|CAG29228.1| intimin gamma-1 [Escherichia coli] 45 0.026
gi|47600874|emb|CAG29773.1| intimin gamma-1 [Escherichia coli] 45 0.026
gi|48144001|emb|CAG32817.1| intimin gamma-1 [Escherichia coli] 45 0.026
gi|2125981|pir||I41193 outer membrane protein eae - Escherichia ... 45 0.026
gi|17059532|emb|CAC81715.1| intimin [Escherichia coli] 45 0.026
gi|47550380|emb|CAG29639.1| intimin iota [Escherichia coli] >gnl... 44 0.044
gi|15384862|emb|CAC59747.1| intimin-jota [Escherichia coli] 44 0.044
gi|47232499|emb|CAG29174.1| intimin pi [Escherichia coli] 44 0.044
gi|22653333|gb|AAN04014.1| intimin epsilon 2 [Escherichia coli] 44 0.044
gi|47600855|emb|CAG29729.1| intimin epsilon-2 [Escherichia coli]... 44 0.044
gi|47600884|emb|CAG29778.1| intimin pi [Escherichia coli] 44 0.044
gi|12247837|gb|AAG50050.1| intimin [Escherichia coli] 44 0.044
gi|47550381|emb|CAG29640.1| intimin theta [Escherichia coli] 44 0.044
gi|15829796|ref|NP_308569.1| hypothetical protein ECs0542 [Esche... 43 0.099
gi|22653331|gb|AAN04013.1| intimin jota 2 [Escherichia coli] 42 0.22
gi|34451973|gb|AAQ72464.1| alpha-fucosidase [Bifidobacterium bif... 42 0.22
gi|48143997|emb|CAG32815.1| intimin iota-2 [Escherichia coli] >g... 42 0.22
gi|32455962|ref|NP_862420.1| putative integral membrane protein ... 41 0.29
gi|10120895|pdb|1E5U|I Chain I, Nmr Representative Structure Of ... 41 0.29
gi|9955262|pdb|1F00|I Chain I, Crystal Structure Of C-Terminal 2... 41 0.29
gi|47550370|emb|CAG29634.1| intimin alpha-1 [Escherichia coli] >... 41 0.29
gi|47600841|emb|CAG29722.1| intimin alpha-1 [Escherichia coli] >... 41 0.29
gi|119099|sp|P19809|EAE_ECO27 Intimin (Attaching and effacing pr... 41 0.29
gi|18997107|gb|AAL83295.1| intimin [Escherichia coli] 41 0.29
gi|48860094|ref|ZP_00314021.1| COG5492: Bacterial surface protei... 41 0.38
gi|33352217|emb|CAE18155.1| alpha2 intimin [Escherichia coli] 40 0.49
gi|22653335|gb|AAN04015.1| intimin alpha 2 [Escherichia coli] >g... 40 0.49
gi|48143987|emb|CAG32810.1| intimin alpha-2 [Escherichia coli] 40 0.49
gi|33352223|emb|CAE18158.1| alpha2 intimin [Escherichia coli] 40 0.49
gi|33341968|emb|CAE18113.1| intimin nu [Escherichia coli] 40 0.64
gi|47232495|emb|CAG29172.1| intimin nu [Escherichia coli] 40 0.64
gi|45656362|ref|YP_000448.1| Ig-like repeat domain protein 3 [Le... 39 1.9
gi|38091808|emb|CAE53386.1| intimin omicron [Escherichia coli] >... 38 2.4
gi|48596277|emb|CAG34192.1| intimin zeta [Escherichia coli] 38 2.4
gi|45331287|gb|AAS57915.1| Eae [Escherichia coli] >gnl|BL_ORD_ID... 38 2.4
gi|47600861|emb|CAG29732.1| intimin zeta [Escherichia coli] >gnl... 38 2.4
gi|17059525|emb|CAC80864.1| intimin [Escherichia coli] >gnl|BL_O... 38 2.4
gi|29345552|ref|NP_809055.1| conserved hypothetical protein [Bac... 38 2.4
gi|12188894|emb|CAC21552.1| intimin zeta [Escherichia coli] >gnl... 38 2.4
gi|29242934|gb|AAO66616.1| intimin-zeta [Escherichia coli] 38 2.4
gi|34148407|gb|AAQ62711.1| G protein [Human metapneumovirus] 38 2.4
gi|45201114|ref|NP_986684.1| AGR019Cp [Eremothecium gossypii] >g... 38 3.2
gi|48144011|emb|CAG32822.1| intimin zeta [Escherichia coli] 38 3.2
gi|18265954|gb|AAL67424.1| zeta intimin [Escherichia coli] >gnl|... 38 3.2
gi|34148409|gb|AAQ62712.1| G protein [Human metapneumovirus] 38 3.2
gi|15832029|ref|NP_310802.1| hypothetical protein ECs2775 [Esche... 38 3.2
gi|34496453|ref|NP_900668.1| lipase/esterase [Chromobacterium vi... 38 3.2
gi|1706558|sp|P52869|EAEA_HAFAL Intimin (Outer membrane protein)... 38 3.2
gi|15594981|ref|NP_212770.1| glucose-6-phosphate 1-dehydrogenase... 37 4.2
gi|15802461|ref|NP_288487.1| putative invasin [Escherichia coli ... 37 4.2
gi|20455388|sp|Q8X8V7|YEEJ_ECO57 Hypothetical protein yeeJ 37 4.2
gi|47600849|emb|CAG29726.1| intimin kappa [Escherichia coli] >gn... 37 5.4
gi|23506942|gb|AAN37923.1| adhesin [Haemophilus influenzae] 37 5.4
gi|48143995|emb|CAG32814.1| intimin kappa [Escherichia coli] 37 5.4
gi|48144019|emb|CAG32826.1| intimin kappa [Escherichia coli] >gn... 37 5.4
gi|15384864|emb|CAC59748.1| intimin-kappa [Escherichia coli] 37 5.4
gi|18466731|ref|NP_569538.1| hypothetical protein HCM2.0066c [Sa... 37 5.4
gi|3355370|emb|CAA73560.1| intimin [Escherichia coli] 37 5.4
gi|16082802|ref|NP_395356.1| hypothetical protein YPMT1.20c [Yer... 37 5.4
gi|17059546|emb|CAC81722.1| intimin [Escherichia coli] 37 7.1
gi|48144015|emb|CAG32824.1| intimin theta [Escherichia coli] 37 7.1
gi|48144007|emb|CAG32820.1| intimin theta [Escherichia coli] >gn... 37 7.1
gi|31322244|gb|AAP04736.1| LigB [Leptospira kirschneri serovar g... 37 7.1
gi|6102758|emb|CAB59278.1| intimin [Escherichia coli] 37 7.1
gi|48596269|emb|CAG34188.1| intimin theta [Escherichia coli] >gn... 37 7.1
gi|48144009|emb|CAG32821.1| intimin theta [Escherichia coli] >gn... 37 7.1
gi|34148405|gb|AAQ62710.1| G protein [Human metapneumovirus] 37 7.1
gi|2125980|pir||I41192 outer membrane protein 2 - Escherichia co... 37 7.1
gi|48143993|emb|CAG32813.1| intimin theta [Escherichia coli] 37 7.1
gi|18202007|sp|O31000|EAE_ECO11 Intimin (Attaching and effacing ... 37 7.1
gi|18265959|gb|AAL67427.1| theta intimin [Escherichia coli] 37 7.1
gi|18265950|gb|AAL67422.1| theta intimin [Escherichia coli] >gnl... 37 7.1
gi|47600902|emb|CAG29787.1| intimin theta [Escherichia coli] >gn... 37 7.1
gi|47824764|emb|CAG29229.1| intimin theta [Escherichia coli] >gn... 37 7.1
gi|15895377|ref|NP_348726.1| Contains cell adhesion domain [Clos... 37 7.1
gi|31322243|gb|AAP04735.1| LigA [Leptospira kirschneri serovar g... 37 7.1
gi|47550383|emb|CAG29641.1| intimin theta [Escherichia coli] >gn... 37 7.1
gi|48825309|ref|ZP_00286567.1| COG1396: Predicted transcriptiona... 37 7.1
gi|50285523|ref|XP_445190.1| unnamed protein product [Candida gl... 36 9.3
gi|20150839|gb|AAM12944.1| attachment glycoprotein [Human metapn... 36 9.3
gi|20089398|ref|NP_615473.1| surface antigen gene [Methanosarcin... 36 9.3
>gi|17509225|ref|NP_491855.1| nucleoporin 210, Nuclear Pore complex
Protein NPP-12 (npp-12) [Caenorhabditis elegans]
gi|7508344|pir||T28969 hypothetical protein T23H2.1 - Caenorhabditis
elegans
gi|1703554|gb|AAC48199.1| Nuclear pore complex protein protein 12
[Caenorhabditis elegans]
Length = 1847
Score = 3423 bits (8875), Expect = 0.0
Identities = 1762/1847 (95%), Positives = 1762/1847 (95%)
Frame = +1
Query: 1 MIILRSLLVLALVQITISYRLNVPRVLLPYHPTVPVSFVLEVTHPTGGCFTWRSTRPDIV 180
MIILRSLLVLALVQITISYRLNVPRVLLPYHPTVPVSFVLEVTHPTGGCFTWRSTRPDIV
Sbjct: 1 MIILRSLLVLALVQITISYRLNVPRVLLPYHPTVPVSFVLEVTHPTGGCFTWRSTRPDIV 60
Query: 181 SVKRIETNEAGCSDKAEIRSVAKPGTVGSSELSAVIFAEDKGSGTTLSCGVTVDEIATIS 360
SVKRIETNEAGCSDKAEIRSVAKPGTVGSSELSAVIFAEDKGSGTTLSCGVTVDEIATIS
Sbjct: 61 SVKRIETNEAGCSDKAEIRSVAKPGTVGSSELSAVIFAEDKGSGTTLSCGVTVDEIATIS 120
Query: 361 IETTTKVLFVDAAPARMTVDAFNADGDRFSTLSEIALEWELASTSSNKAKPLRIVPFEQS 540
IETTTKVLFVDAAPARMTVDAFNADGDRFSTLSEIALEWELASTSSNKAKPLRIVPFEQS
Sbjct: 121 IETTTKVLFVDAAPARMTVDAFNADGDRFSTLSEIALEWELASTSSNKAKPLRIVPFEQS 180
Query: 541 TYEAPSEIVKLEKNRKKGYLILIEGVGTGTATLTTKFSDAYLQKXXXXXXXXXXXXXXXX 720
TYEAPSEIVKLEKNRKKGYLILIEGVGTGTATLTTKFSDAYLQK
Sbjct: 181 TYEAPSEIVKLEKNRKKGYLILIEGVGTGTATLTTKFSDAYLQKVAAHNVELAVVANLLL 240
Query: 721 XPSQDVYLPVHSVLPFQVLIVKQRGTEIVNMPNPSYELQIDGGDVASLDKKSSSVRALTI 900
PSQDVYLPVHSVLPFQVLIVKQRGTEIVNMPNPSYELQIDGGDVASLDKKSSSVRALTI
Sbjct: 241 VPSQDVYLPVHSVLPFQVLIVKQRGTEIVNMPNPSYELQIDGGDVASLDKKSSSVRALTI 300
Query: 901 GNTAVHLLSSHVDVRAKAGLRPPSTVIHVVDAESVQWHVSGDNWMLETGKQYTINVELLD 1080
GNTAVHLLSSHVDVRAKAGLRPPSTVIHVVDAESVQWHVSGDNWMLETGKQYTINVELLD
Sbjct: 301 GNTAVHLLSSHVDVRAKAGLRPPSTVIHVVDAESVQWHVSGDNWMLETGKQYTINVELLD 360
Query: 1081 EHGNVMFVADNSRFDTHIDEQFLHVDFKSENGTWFLVTPLKPSKTTLRTKFVAIIDAKGN 1260
EHGNVMFVADNSRFDTHIDEQFLHVDFKSENGTWFLVTPLKPSKTTLRTKFVAIIDAKGN
Sbjct: 361 EHGNVMFVADNSRFDTHIDEQFLHVDFKSENGTWFLVTPLKPSKTTLRTKFVAIIDAKGN 420
Query: 1261 RIAQSGKIGGEQRXXXXXXXXXXXXXXYLPFVSEKRSQIDLTATGGSGLFEWTSEDGHVA 1440
RIAQSGKIGGEQR YLPFVSEKRSQIDLTATGGSGLFEWTSEDGHVA
Sbjct: 421 RIAQSGKIGGEQRVTIVDPVRIVPPVIYLPFVSEKRSQIDLTATGGSGLFEWTSEDGHVA 480
Query: 1441 TVDLLTGRMTANSLGSTKVKATDKRNDQLRDIASVHILEVSGIGFGETVRETFVGDTLTL 1620
TVDLLTGRMTANSLGSTKVKATDKRNDQLRDIASVHILEVSGIGFGETVRETFVGDTLTL
Sbjct: 481 TVDLLTGRMTANSLGSTKVKATDKRNDQLRDIASVHILEVSGIGFGETVRETFVGDTLTL 540
Query: 1621 NIKATGLTSDGLLVEMSDCRNIRAHVQITDNALLRHESSADSSLPMMGTGCGTITFKGLS 1800
NIKATGLTSDGLLVEMSDCRNIRAHVQITDNALLRHESSADSSLPMMGTGCGTITFKGLS
Sbjct: 541 NIKATGLTSDGLLVEMSDCRNIRAHVQITDNALLRHESSADSSLPMMGTGCGTITFKGLS 600
Query: 1801 SGDARVSISYLGHKASIDVAVYEKLXXXXXXXXXALGSTHPLTVSGGPRPWILDPANFYK 1980
SGDARVSISYLGHKASIDVAVYEKL ALGSTHPLTVSGGPRPWILDPANFYK
Sbjct: 601 SGDARVSISYLGHKASIDVAVYEKLSISEESSSIALGSTHPLTVSGGPRPWILDPANFYK 660
Query: 1981 TQETKQSQLQVTFENEKVLFKCGSSEVTEAVRLRIGNLKSSTLPLPIHSEITVSICCAKP 2160
TQETKQSQLQVTFENEKVLFKCGSSEVTEAVRLRIGNLKSSTLPLPIHSEITVSICCAKP
Sbjct: 661 TQETKQSQLQVTFENEKVLFKCGSSEVTEAVRLRIGNLKSSTLPLPIHSEITVSICCAKP 720
Query: 2161 TRLEIFDKKQRPSKCPLNVHSMLINTNVELVLRGSGVCNGAATPLASINGLSPKWTTSDS 2340
TRLEIFDKKQRPSKCPLNVHSMLINTNVELVLRGSGVCNGAATPLASINGLSPKWTTSDS
Sbjct: 721 TRLEIFDKKQRPSKCPLNVHSMLINTNVELVLRGSGVCNGAATPLASINGLSPKWTTSDS 780
Query: 2341 GLLTVNRHGIEADATSGKKEGQVTIQAQAGSLSTKYEITVKKGLNVEPARLVLWNEAVSK 2520
GLLTVNRHGIEADATSGKKEGQVTIQAQAGSLSTKYEITVKKGLNVEPARLVLWNEAVSK
Sbjct: 781 GLLTVNRHGIEADATSGKKEGQVTIQAQAGSLSTKYEITVKKGLNVEPARLVLWNEAVSK 840
Query: 2521 GTFTITGGSGHFHVDNLPTSDSPVAIALRARSLTVTPKNNGQVNLRISDACLVGQHADAS 2700
GTFTITGGSGHFHVDNLPTSDSPVAIALRARSLTVTPKNNGQVNLRISDACLVGQHADAS
Sbjct: 841 GTFTITGGSGHFHVDNLPTSDSPVAIALRARSLTVTPKNNGQVNLRISDACLVGQHADAS 900
Query: 2701 VRIADIHSLAIDAPQFVEIGQEVEVEILAQDETGASFEKEHRPLADAQLDASNNHVILTK 2880
VRIADIHSLAIDAPQFVEIGQEVEVEILAQDETGASFEKEHRPLADAQLDASNNHVILTK
Sbjct: 901 VRIADIHSLAIDAPQFVEIGQEVEVEILAQDETGASFEKEHRPLADAQLDASNNHVILTK 960
Query: 2881 VDGLRYTLRANSIGTXXXXXXXXXXXXXXXXXXPHTVQIFSPIFLQPKRLTLIPDSKFQL 3060
VDGLRYTLRANSIGT PHTVQIFSPIFLQPKRLTLIPDSKFQL
Sbjct: 961 VDGLRYTLRANSIGTVSLSASSKSSSGRVLSSRPHTVQIFSPIFLQPKRLTLIPDSKFQL 1020
Query: 3061 EVVGGPQPTPPLDFSLNNSMIASIEPNALITSSELGYTAITGTVRVGDGHVTLDTVVLRV 3240
EVVGGPQPTPPLDFSLNNSMIASIEPNALITSSELGYTAITGTVRVGDGHVTLDTVVLRV
Sbjct: 1021 EVVGGPQPTPPLDFSLNNSMIASIEPNALITSSELGYTAITGTVRVGDGHVTLDTVVLRV 1080
Query: 3241 ASLGGIILSASSRKVETGGRVNLRLRGVIAGAEDEEPFAFGGAIYPFKVTWSVSDPSVLF 3420
ASLGGIILSASSRKVETGGRVNLRLRGVIAGAEDEEPFAFGGAIYPFKVTWSVSDPSVLF
Sbjct: 1081 ASLGGIILSASSRKVETGGRVNLRLRGVIAGAEDEEPFAFGGAIYPFKVTWSVSDPSVLF 1140
Query: 3421 TTHPLGGDVVEPTDNQFAIWFNAIRGGSVTVKAVVELNEKARKHFTGRTSTFTAETTITV 3600
TTHPLGGDVVEPTDNQFAIWFNAIRGGSVTVKAVVELNEKARKHFTGRTSTFTAETTITV
Sbjct: 1141 TTHPLGGDVVEPTDNQFAIWFNAIRGGSVTVKAVVELNEKARKHFTGRTSTFTAETTITV 1200
Query: 3601 EDGLSLVQPEMDINTVRVAPNSQLKMVTAWSQASFSVPSDFSSRIVISADGHLITNGKEG 3780
EDGLSLVQPEMDINTVRVAPNSQLKMVTAWSQASFSVPSDFSSRIVISADGHLITNGKEG
Sbjct: 1201 EDGLSLVQPEMDINTVRVAPNSQLKMVTAWSQASFSVPSDFSSRIVISADGHLITNGKEG 1260
Query: 3781 SAAITVRNVNSPDNETVLIPVTVSRVASLDVHPTIELKSAFENSPLIHLPVGAQIQLNVV 3960
SAAITVRNVNSPDNETVLIPVTVSRVASLDVHPTIELKSAFENSPLIHLPVGAQIQLNVV
Sbjct: 1261 SAAITVRNVNSPDNETVLIPVTVSRVASLDVHPTIELKSAFENSPLIHLPVGAQIQLNVV 1320
Query: 3961 PRDARGRRLAAASNSINFRPHRFDLTDIVATNSNQTLTITLKTAGDTVLRIGDASNTHIA 4140
PRDARGRRLAAASNSINFRPHRFDLTDIVATNSNQTLTITLKTAGDTVLRIGDASNTHIA
Sbjct: 1321 PRDARGRRLAAASNSINFRPHRFDLTDIVATNSNQTLTITLKTAGDTVLRIGDASNTHIA 1380
Query: 4141 TFIRLSASESILPRAAHKYANDLVVSDVICLQSNIFTVDXXXXXXXXXXXXXXXXLDENL 4320
TFIRLSASESILPRAAHKYANDLVVSDVICLQSNIFTVD LDENL
Sbjct: 1381 TFIRLSASESILPRAAHKYANDLVVSDVICLQSNIFTVDGSRWSSQSSSEGRISWLDENL 1440
Query: 4321 GVAQLTKAGNTFIRLHADKQTIHSKISVVLPSSLRFPDGQKPEFVSNDEHSVFVIPVIAA 4500
GVAQLTKAGNTFIRLHADKQTIHSKISVVLPSSLRFPDGQKPEFVSNDEHSVFVIPVIAA
Sbjct: 1441 GVAQLTKAGNTFIRLHADKQTIHSKISVVLPSSLRFPDGQKPEFVSNDEHSVFVIPVIAA 1500
Query: 4501 TNNTSGSKVSSIYGECTADQIRSFDAIGAPFECQVAFTRRSKIISAVNWLTVSAVFSPVF 4680
TNNTSGSKVSSIYGECTADQIRSFDAIGAPFECQVAFTRRSKIISAVNWLTVSAVFSPVF
Sbjct: 1501 TNNTSGSKVSSIYGECTADQIRSFDAIGAPFECQVAFTRRSKIISAVNWLTVSAVFSPVF 1560
Query: 4681 GYGCEIRRFDSSVSTSSIVVPEELLKDQFDARITAKWISDGTVQVNDATIDVPFHFAFIV 4860
GYGCEIRRFDSSVSTSSIVVPEELLKDQFDARITAKWISDGTVQVNDATIDVPFHFAFIV
Sbjct: 1561 GYGCEIRRFDSSVSTSSIVVPEELLKDQFDARITAKWISDGTVQVNDATIDVPFHFAFIV 1620
Query: 4861 EEKELVFSNMNQIEAALSIWAPTYDSKHIVVSGCEGDIVSVEKTSRSSDKHSAKANVFYN 5040
EEKELVFSNMNQIEAALSIWAPTYDSKHIVVSGCEGDIVSVEKTSRSSDKHSAKANVFYN
Sbjct: 1621 EEKELVFSNMNQIEAALSIWAPTYDSKHIVVSGCEGDIVSVEKTSRSSDKHSAKANVFYN 1680
Query: 5041 IRLNIKSAALFTEHAKKCQISVENTLTGQVIRVPVTVQLLDETAKQVYNALESRGVVDVL 5220
IRLNIKSAALFTEHAKKCQISVENTLTGQVIRVPVTVQLLDETAKQVYNALESRGVVDVL
Sbjct: 1681 IRLNIKSAALFTEHAKKCQISVENTLTGQVIRVPVTVQLLDETAKQVYNALESRGVVDVL 1740
Query: 5221 LILAHKYSHAIPTLLWTCXXXXXXXXXXXYVKMNVFDKTGSFGDNTLNNTTHQTSMASSL 5400
LILAHKYSHAIPTLLWTC YVKMNVFDKTGSFGDNTLNNTTHQTSMASSL
Sbjct: 1741 LILAHKYSHAIPTLLWTCLVGIIILVIGIYVKMNVFDKTGSFGDNTLNNTTHQTSMASSL 1800
Query: 5401 SSTNVSLREPVFRSTPIAGSPQVSLPTARDRLRNQMGSGGDNRLWSY 5541
SSTNVSLREPVFRSTPIAGSPQVSLPTARDRLRNQMGSGGDNRLWSY
Sbjct: 1801 SSTNVSLREPVFRSTPIAGSPQVSLPTARDRLRNQMGSGGDNRLWSY 1847
>gi|39595690|emb|CAE67193.1| Hypothetical protein CBG12629
[Caenorhabditis briggsae]
Length = 1843
Score = 2853 bits (7396), Expect = 0.0
Identities = 1429/1832 (78%), Positives = 1592/1832 (86%), Gaps = 2/1832 (0%)
Frame = +1
Query: 52 SYRLNVPRVLLPYHPTVPVSFVLEVTHPTGGCFTWRSTRPDIVSVKRIETNEAGCSDKAE 231
+YRLNVPRVLLPYHPTVPVSFVLEVTHPTGGCF+WRSTRPDIVSVK I T++AGCSDKAE
Sbjct: 35 AYRLNVPRVLLPYHPTVPVSFVLEVTHPTGGCFSWRSTRPDIVSVKSIVTSDAGCSDKAE 94
Query: 232 IRSVAKPGTVGSSELSAVIFAEDKGSGTTLSCGVTVDEIATISIETTTKVLFVDAAPARM 411
IRSVAKPG+VGSSELSAVIFAEDK + +VLFVDAAPARM
Sbjct: 95 IRSVAKPGSVGSSELSAVIFAEDKDNN---------------------EVLFVDAAPARM 133
Query: 412 TVDAFNADGDRFSTLSEIALEWELASTSSNKAKPLRIVPFEQSTYEAPSEIVKLEKNRKK 591
TVDAFNADGDRFSTLSE+ALEWEL+STSSNKAKPLRIVPFEQSTYEAPSEIVKLEKNRKK
Sbjct: 134 TVDAFNADGDRFSTLSELALEWELSSTSSNKAKPLRIVPFEQSTYEAPSEIVKLEKNRKK 193
Query: 592 GYLILIEGVGTGTATLTTKFSDAYLQKXXXXXXXXXXXXXXXXXPSQDVYLPVHSVLPFQ 771
GYLILIEGVGTGTATLTTKFSDAYLQK PSQD+Y+PVHSV+PFQ
Sbjct: 194 GYLILIEGVGTGTATLTTKFSDAYLQKVAAHNVELAVVANLLLVPSQDIYMPVHSVIPFQ 253
Query: 772 VLIVKQRGTEIVNMPNPSYELQIDGGDVASLDKKSSSVRALTIGNTAVHLLSSHVDVRAK 951
VLIVKQRGTE+VNMPNPSYEL+IDG DVASLDK +SSVRAL+ GNTAVHLLSSHVDVRAK
Sbjct: 254 VLIVKQRGTEVVNMPNPSYELKIDGVDVASLDKATSSVRALSTGNTAVHLLSSHVDVRAK 313
Query: 952 AGLRPPSTVIHVVDAESVQWHVSGDNWMLETGKQYTINVELLDEHGNVMFVADNSRFDTH 1131
AGLRPPSTVIHVVDAESVQWHVSG+NWMLETGKQYTINVELLDEHGNVMFV+DNSRFDT
Sbjct: 314 AGLRPPSTVIHVVDAESVQWHVSGENWMLETGKQYTINVELLDEHGNVMFVSDNSRFDTR 373
Query: 1132 IDEQFLHVDFKSENGTWFLVTPLKPSKTTLRTKFVAIIDAKGNRIAQSGKIGGEQRXXXX 1311
+DE L VDFKSENGTW LVTPLKPSKTTL TKFVAIIDA G I+QSGKIGGEQR
Sbjct: 374 VDENVLRVDFKSENGTWLLVTPLKPSKTTLHTKFVAIIDANGKTISQSGKIGGEQRATIV 433
Query: 1312 XXXXXXXXXXYLPFVSEKRSQIDLTATGGSGLFEWTSEDGHVATVDLLTGRMTANSLGST 1491
YLPFV+EKRSQIDLTATGGSGLF+W+SED H+ATVDL +GR+TANSLG+T
Sbjct: 434 DAVRIVPPVIYLPFVTEKRSQIDLTATGGSGLFDWSSEDDHIATVDLTSGRLTANSLGNT 493
Query: 1492 KVKATDKRNDQLRDIASVHILEVSGIGFGETVRETFVGDTLTLNIKATGLTSDGLLVEMS 1671
V+ATDKRN+QL+D ASVH+LEVSGIGFGE VRETFVG+ L LNIKATGL SDG+LVEMS
Sbjct: 494 VVQATDKRNEQLKDRASVHVLEVSGIGFGEAVRETFVGENLELNIKATGLNSDGVLVEMS 553
Query: 1672 DCRNIRAHVQITDNALLRHESSADSSLPMMGTGCGTITFKGLSSGDARVSISYLGHKASI 1851
DCRNIR HVQ++D+ALLRHES+ DS LP +GTGCGTI+ KGLSSGDARV++SYLGHKAS+
Sbjct: 554 DCRNIRVHVQLSDSALLRHESNVDSHLPKVGTGCGTISLKGLSSGDARVTVSYLGHKASV 613
Query: 1852 DVAVYEKLXXXXXXXXXALGSTHPLTVSGGPRPWILDPANFYKTQETKQSQ-LQVTFENE 2028
DVAVYEKL ALGS+H L ++GGPRPWILDPANFYK +ET + + VTFENE
Sbjct: 614 DVAVYEKLKISEDSAAIALGSSHHLVINGGPRPWILDPANFYKRRETLDKKYVDVTFENE 673
Query: 2029 KVLFKCGSSEVTEAVRLRIGNLKSSTLPLPIHSEITVSICCAKPTRLEIFDKKQRPSKCP 2208
KV+FKCGSSE+TE+VR+R+GN KSSTLPLPIHS+ITVSICCAKPTRLEI + K R KCP
Sbjct: 674 KVVFKCGSSEMTESVRVRVGNQKSSTLPLPIHSDITVSICCAKPTRLEISENKPRLPKCP 733
Query: 2209 LNVHSMLINTNVELVLRGSGVCNGAATPLASINGLSPKWTTSDSGLLTVNRHGIEADATS 2388
LNVHSML + ELVLRGSG CNG TPLASINGLSPKWTTSDS LL + R GI+++ +
Sbjct: 734 LNVHSMLSESEKELVLRGSGACNGVVTPLASINGLSPKWTTSDSSLLKIRRQGIQSEVAA 793
Query: 2389 GKKEGQVTIQAQAGSLSTKYEITVKKGLNVEPARLVLWNEAVSKGTFTITGGSGHFHVDN 2568
GKKEG VT+QA AGSLS KYE+TV G+ +EPARL+LWNE +SKGTFTI GGSGHFHVDN
Sbjct: 794 GKKEGSVTVQAHAGSLSAKYEVTVTHGIRIEPARLILWNEDISKGTFTIAGGSGHFHVDN 853
Query: 2569 LPTSDSPVAIALRARSLTVTPKNNGQVNLRISDACLVGQHADASVRIADIHSLAIDAPQF 2748
LPT ++PVA++L +RSLTVTPKNNG++++R++D+CLVGQ+ADASV+IADIHSLAIDAPQ+
Sbjct: 854 LPTHNTPVAVSLLSRSLTVTPKNNGEISIRVTDSCLVGQYADASVKIADIHSLAIDAPQY 913
Query: 2749 VEIGQEVEVEILAQDETGASFEKEHRPLADAQLDASNNHVILTKVDGLRYTLRANSIGTX 2928
VEIGQEVEVEILAQDETGASFE+EHRPLADAQLD SN H +LTKVDGLRY LRANSIG+
Sbjct: 914 VEIGQEVEVEILAQDETGASFEREHRPLADAQLDVSNQHAVLTKVDGLRYKLRANSIGSV 973
Query: 2929 XXXXXXXXXXXXXXXXXPHTVQIFSPIFLQPKRLTLIPDSKFQLEVVGGPQPTPPLDFSL 3108
HTVQIFSPIFLQPKRLTLIPD+KFQLEVVGGPQPTPPLDFSL
Sbjct: 974 SLSATSKSSSGRVLSSRLHTVQIFSPIFLQPKRLTLIPDAKFQLEVVGGPQPTPPLDFSL 1033
Query: 3109 NNSMIASIEPNALITSSELGYTAITGTVRVGDGHVTLDTVVLRVASLGGIILSASSRKVE 3288
NNSMIA+IEPNALITSSE+GYT+ITGTVRVGDGHVT D+VVLRVASLGGI+LSASS KVE
Sbjct: 1034 NNSMIATIEPNALITSSEIGYTSITGTVRVGDGHVTKDSVVLRVASLGGIVLSASSHKVE 1093
Query: 3289 TGGRVNLRLRGVIAGAEDEEPFAFGGAIYPFKVTWSVSDPSVLFTTHPLGGDVVEPTDNQ 3468
TGGRVNLRLRG+ AGAEDEEPFAFGGAIYPFKVTWSVSDPS++ TTHPLG DVVEP DNQ
Sbjct: 1094 TGGRVNLRLRGIFAGAEDEEPFAFGGAIYPFKVTWSVSDPSIISTTHPLGSDVVEPADNQ 1153
Query: 3469 FAIWFNAIRGGSVTVKAVVELNEKARKHFTGRTSTFTAETTITVEDGLSLVQPEMDINTV 3648
FAIWF+AIR GSVTVKAVV LNEKARKHF GR+++FT+E T+TVED LSLV PEM +N+V
Sbjct: 1154 FAIWFDAIRSGSVTVKAVVTLNEKARKHFVGRSTSFTSEITVTVEDALSLVHPEMAVNSV 1213
Query: 3649 RVAPNSQLKMVTAWSQASFSVPSDFSSRIVISADGHLITNGKEGSAAITVRNVNSPDNET 3828
RVAPNSQLKM T WSQA+FSVP +FS+RI IS++G L TNGKEGSAA+ VR +NSPDNET
Sbjct: 1214 RVAPNSQLKMQTIWSQAAFSVPLEFSNRISISSEGFLRTNGKEGSAAVAVRKLNSPDNET 1273
Query: 3829 VLIPVTVSRVASLDVHPTIELKSAFENSPLIHLPVGAQIQLNVVPRDARGRRLAAASNSI 4008
VLIPVTVSRVAS D++PT ELKSAFENSP++HLPVGAQIQLNVVPRDARGRRLAAASNSI
Sbjct: 1274 VLIPVTVSRVASFDIYPTTELKSAFENSPIVHLPVGAQIQLNVVPRDARGRRLAAASNSI 1333
Query: 4009 NFRPHRFDLTDIVATNSNQTLTITLKTAGDTVLRIGDASNTHIATFIRLSASESILPRAA 4188
NFRPHRFDLTDIVATN+N TLTITLKTAGDTVLRIGDA+N HI+TFIRLSASESILPR+A
Sbjct: 1334 NFRPHRFDLTDIVATNNNLTLTITLKTAGDTVLRIGDAANIHISTFIRLSASESILPRSA 1393
Query: 4189 HKYANDLVVSDVICLQSNIFTVDXXXXXXXXXXXXXXXXLDENLGVAQLTKAGNTFIRLH 4368
HK+A DLVVSDVICLQSNI T D L+E+LGVAQL KAGN F++LH
Sbjct: 1394 HKHAEDLVVSDVICLQSNILTGDGAHWSSQSSSEGRINWLNEHLGVAQLAKAGNAFVKLH 1453
Query: 4369 ADKQTIHSKISVVLPSSLRFPDGQKPEFVSNDEHSVFVIPVIAATNNTSGSKVSSIYGEC 4548
+QTIHSKISV+LPSSLRFP+ Q P+FVSNDEHSVFVIPV A TNNTS +KVSSIYGEC
Sbjct: 1454 TSQQTIHSKISVLLPSSLRFPE-QHPDFVSNDEHSVFVIPVTATTNNTSRNKVSSIYGEC 1512
Query: 4549 TADQIRSFDAIGAPFECQVAFTRRSK-IISAVNWLTVSAVFSPVFGYGCEIRRFDSSVST 4725
ADQIRSFD I APF CQV+F R+SK ++SAVNWLT SAVFSP FGYGCEIRR D+S+ST
Sbjct: 1513 NADQIRSFDTISAPFGCQVSFVRKSKHVLSAVNWLTASAVFSPTFGYGCEIRRLDTSIST 1572
Query: 4726 SSIVVPEELLKDQFDARITAKWISDGTVQVNDATIDVPFHFAFIVEEKELVFSNMNQIEA 4905
SSI VPEELLKDQ DARITAKW+SDGTVQV++A +DVPFHFAFIV+EKELVFSNMNQI+A
Sbjct: 1573 SSIAVPEELLKDQVDARITAKWVSDGTVQVDEAQVDVPFHFAFIVQEKELVFSNMNQIDA 1632
Query: 4906 ALSIWAPTYDSKHIVVSGCEGDIVSVEKTSRSSDKHSAKANVFYNIRLNIKSAALFTEHA 5085
ALSIW P YDSK+IVVSGCEGDIVSV KT +SS+ HSAKAN+FYN+ LN+K+AALFTEHA
Sbjct: 1633 ALSIWVPLYDSKNIVVSGCEGDIVSVGKT-KSSEHHSAKANIFYNVHLNVKAAALFTEHA 1691
Query: 5086 KKCQISVENTLTGQVIRVPVTVQLLDETAKQVYNALESRGVVDVLLILAHKYSHAIPTLL 5265
KKCQI+VENTLTGQ++RVPVTVQLLDETAKQV+NALESRG+VDVLLILA KYSH IPTLL
Sbjct: 1692 KKCQITVENTLTGQIVRVPVTVQLLDETAKQVFNALESRGIVDVLLILAQKYSHTIPTLL 1751
Query: 5266 WTCXXXXXXXXXXXYVKMNVFDKTGSFGDNTLNNTTHQTSMASSLSSTNVSLREPVFRST 5445
WTC YVK +VFDK+GSFGDNT+NN+ H TS+ SS +STNVSLR+P+FRST
Sbjct: 1752 WTCFIAFVILVIGIYVKTSVFDKSGSFGDNTINNSAHHTSIGSSFNSTNVSLRDPIFRST 1811
Query: 5446 PIAGSPQVSLPTARDRLRNQMGSGGDNRLWSY 5541
PIAGSPQV+LPT RDRLRN+MGSGG+N+LWSY
Sbjct: 1812 PIAGSPQVALPTPRDRLRNKMGSGGENQLWSY 1843
>gi|25151588|ref|NP_741681.1| nucleoporin 210 family member (5T569)
[Caenorhabditis elegans]
gi|11359770|pir||T45029 hypothetical protein Y39B6B.c [imported] -
Caenorhabditis elegans
Length = 900
Score = 678 bits (1750), Expect = 0.0
Identities = 364/439 (82%), Positives = 366/439 (82%)
Frame = +1
Query: 2629 PKNNGQVNLRISDACLVGQHADASVRIADIHSLAIDAPQFVEIGQEVEVEILAQDETGAS 2808
PKNNGQVNLRISDACLVGQHADASVRIADIHSLAIDAPQFVEIG+EVEVEILAQDETGAS
Sbjct: 504 PKNNGQVNLRISDACLVGQHADASVRIADIHSLAIDAPQFVEIGREVEVEILAQDETGAS 563
Query: 2809 FEKEHRPLADAQLDASNNHVILTKVDGLRYTLRANSIGTXXXXXXXXXXXXXXXXXXPHT 2988
FEKEHRPLADAQLDASNNHVILTKVDGLRYTLRANSIGT PHT
Sbjct: 564 FEKEHRPLADAQLDASNNHVILTKVDGLRYTLRANSIGTVSLSASSKSSSGRVLSSRPHT 623
Query: 2989 VQIFSPIFLQPKRLTLIPDSKFQLEVVGGPQPTPPLDFSLNNSMIASIEPNALITSSELG 3168
VQIFSPIFLQPKRLTLIPDSKFQLEVVGG QPTPPLDFSLNNSMIASIEPN LITSSELG
Sbjct: 624 VQIFSPIFLQPKRLTLIPDSKFQLEVVGGSQPTPPLDFSLNNSMIASIEPNTLITSSELG 683
Query: 3169 YTAITGTVRVGDGHVTLDTVVLRVASLGGIILSASSRKVETGGRVNLRLRGVIAGAEDEE 3348
YTAITGTVRVGDGHVT DTVVLRVASLGGIILSASSRKVETGGRVNLRLRGVIAGAEDEE
Sbjct: 684 YTAITGTVRVGDGHVTKDTVVLRVASLGGIILSASSRKVETGGRVNLRLRGVIAGAEDEE 743
Query: 3349 PFAFGGAIYPFKVTWSVSDPSVLFTTHPLGGDVVEPTDNQFAIWFNAIRGGSVTVKAVVE 3528
PFAFG AIYPFK
Sbjct: 744 PFAFGEAIYPFK------------------------------------------------ 755
Query: 3529 LNEKARKHFTGRTSTFTAETTITVEDGLSLVQPEMDINTVRVAPNSQLKMVTAWSQASFS 3708
LNEKARKHFTGRTSTFTAETTITVEDGLSLVQPEMDINTVRVAPNSQLKMVTAWSQASFS
Sbjct: 756 LNEKARKHFTGRTSTFTAETTITVEDGLSLVQPEMDINTVRVAPNSQLKMVTAWSQASFS 815
Query: 3709 VPSDFSSRIVISADGHLITNGKEGSAAITVRNVNSPDNETVLIPVTVSRVASLDVHPTIE 3888
V SDFSSRIVISADGHL TNGKEGSAAITVRNVNSPDNETVLIPVTVSRVASLDVHPTIE
Sbjct: 816 VRSDFSSRIVISADGHLRTNGKEGSAAITVRNVNSPDNETVLIPVTVSRVASLDVHPTIE 875
Query: 3889 LKSAFENSPLIHLPVGAQI 3945
LKSAFENSPLIHLPVGA +
Sbjct: 876 LKSAFENSPLIHLPVGASL 894
Score = 75.9 bits (185), Expect = 1e-11
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = +1
Query: 2263 SGVCNGAATPLASINGLSPKWTTSDSGLLTVNRHGIEADATSGK 2394
+ + + AATPLASINGLSPKWTTSDSGLLTVNRHGI+ DA+SGK
Sbjct: 446 TNISDEAATPLASINGLSPKWTTSDSGLLTVNRHGIDTDASSGK 489