Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= W09G12_7
(537 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17542854|ref|NP_500058.1| putative protein (4B985) [Caenorhab... 45 0.001
>gi|17542854|ref|NP_500058.1| putative protein (4B985)
[Caenorhabditis elegans]
gi|25395992|pir||E88637 protein W09G12.6 [imported] -
Caenorhabditis elegans
gi|2911883|gb|AAC04448.1| Hypothetical protein W09G12.6
[Caenorhabditis elegans]
Length = 178
Score = 44.7 bits (104), Expect = 0.001
Identities = 31/114 (27%), Positives = 31/114 (27%)
Frame = +1
Query: 1 MKLFQVLIISMICLALVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
MKLFQVLIISMICLALVEE
Sbjct: 1 MKLFQVLIISMICLALVEERRDRSNRRRNQSEGGSRSRSESWLGSSGSSRSRSSGRSAAS 60
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILNGVGGLMRSV 342
ILNGVGGLMRSV
Sbjct: 61 AGSSQAASPAGASAIGSSQAGSSAGSPAAAAAGGSGGADAGAILNGVGGLMRSV 114
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,405,992
Number of Sequences: 1967186
Number of extensions: 1678638
Number of successful extensions: 6182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6172
length of database: 661,712,633
effective HSP length: 118
effective length of database: 429,584,685
effective search space used: 25775081100
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)