Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= Y46G5A_18
         (330 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17537155|ref|NP_496724.1| putative nuclear protein (11.4 kD) ...   124   6e-28


>gi|17537155|ref|NP_496724.1| putative nuclear protein (11.4 kD)
           (2N101) [Caenorhabditis elegans]
 gi|6425319|emb|CAB60362.1| Hypothetical protein Y46G5A.20
           [Caenorhabditis elegans]
          Length = 109

 Score =  124 bits (310), Expect = 6e-28
 Identities = 57/109 (52%), Positives = 57/109 (52%)
 Frame = +1

Query: 1   MERCPGCHSTACVGYSGGDCFYFKLCQDSFPRHAPRRRXXXXXXXXXXXXXXXXXXXXXX 180
           MERCPGCHSTACVGYSGGDCFYFKLCQDSFPRHAPRRR
Sbjct: 1   MERCPGCHSTACVGYSGGDCFYFKLCQDSFPRHAPRRRSSSSSSSSSSSTSSSSSSNSSE 60

Query: 181 XDDQVGQLSTRYQNQNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTL 327
            DDQVGQLSTRYQNQNL                             MTL
Sbjct: 61  SDDQVGQLSTRYQNQNLSESSSESSVSSSDDSSDDSSDDSCSNDSSMTL 109


  Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
    Posted date:  Aug 11, 2004 12:04 AM
  Number of letters in database: 661,712,633
  Number of sequences in database:  1,967,186

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,887,690
Number of Sequences: 1967186
Number of extensions: 3119457
Number of successful extensions: 6558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6554
length of database: 661,712,633
effective HSP length: 85
effective length of database: 494,501,823
effective search space used: 11868043752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


[DB home][top]