Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= Y46G5A_18
(330 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17537155|ref|NP_496724.1| putative nuclear protein (11.4 kD) ... 124 6e-28
>gi|17537155|ref|NP_496724.1| putative nuclear protein (11.4 kD)
(2N101) [Caenorhabditis elegans]
gi|6425319|emb|CAB60362.1| Hypothetical protein Y46G5A.20
[Caenorhabditis elegans]
Length = 109
Score = 124 bits (310), Expect = 6e-28
Identities = 57/109 (52%), Positives = 57/109 (52%)
Frame = +1
Query: 1 MERCPGCHSTACVGYSGGDCFYFKLCQDSFPRHAPRRRXXXXXXXXXXXXXXXXXXXXXX 180
MERCPGCHSTACVGYSGGDCFYFKLCQDSFPRHAPRRR
Sbjct: 1 MERCPGCHSTACVGYSGGDCFYFKLCQDSFPRHAPRRRSSSSSSSSSSSTSSSSSSNSSE 60
Query: 181 XDDQVGQLSTRYQNQNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTL 327
DDQVGQLSTRYQNQNL MTL
Sbjct: 61 SDDQVGQLSTRYQNQNLSESSSESSVSSSDDSSDDSSDDSCSNDSSMTL 109
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,887,690
Number of Sequences: 1967186
Number of extensions: 3119457
Number of successful extensions: 6558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6554
length of database: 661,712,633
effective HSP length: 85
effective length of database: 494,501,823
effective search space used: 11868043752
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)