Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= Y48A6B_5
         (627 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17555992|ref|NP_499416.1| exosomal core protein CSL4 like (23...   373   e-102
gi|39591752|emb|CAE71330.1| Hypothetical protein CBG18230 [Caeno...   343   2e-93
gi|50415689|gb|AAH77633.1| Unknown (protein for MGC:86284) [Xeno...    89   9e-17
gi|22267446|ref|NP_079920.1| exosome component 1 [Mus musculus] ...    88   2e-16
gi|47223879|emb|CAG06056.1| unnamed protein product [Tetraodon n...    87   3e-16
gi|7705612|ref|NP_057130.1| exosomal core protein CSL4; homolog ...    86   4e-16
gi|24583644|ref|NP_609492.1| CG6249-PA [Drosophila melanogaster]...    84   2e-15
gi|38048131|gb|AAR09968.1| similar to Drosophila melanogaster CG...    79   5e-14
gi|48098586|ref|XP_394110.1| similar to ENSANGP00000010932 [Apis...    74   2e-12
gi|42568189|ref|NP_568559.2| exoribonuclease-related [Arabidopsi...    74   2e-12
gi|31224112|ref|XP_317396.1| ENSANGP00000006954 [Anopheles gambi...    69   7e-11
gi|32405764|ref|XP_323495.1| hypothetical protein ( (AL513463) c...    62   7e-09
gi|47848174|dbj|BAD22001.1| exoribonuclease-like [Oryza sativa (...    60   3e-08
gi|12833277|dbj|BAB22465.1| unnamed protein product [Mus musculus]     59   8e-08
gi|38104559|gb|EAA51106.1| hypothetical protein MG08628.4 [Magna...    55   1e-06
gi|29841415|gb|AAP06447.1| similar to NM_016046 homolog of yeast...    54   3e-06
gi|50749687|ref|XP_421712.1| PREDICTED: similar to exosome compo...    50   4e-05
gi|23491235|gb|EAA22823.1| 3'-5' exoribonuclease csl4 homolog (e...    49   8e-05
gi|9758066|dbj|BAB08645.1| unnamed protein product [Arabidopsis ...    47   4e-04
gi|50258403|gb|EAL21092.1| hypothetical protein CNBD4680 [Crypto...    46   5e-04
gi|50543262|ref|XP_499797.1| hypothetical protein [Yarrowia lipo...    46   7e-04
gi|50307887|ref|XP_453937.1| unnamed protein product [Kluyveromy...    44   0.003
gi|46125893|ref|XP_387500.1| hypothetical protein FG07324.1 [Gib...    44   0.003
gi|23612570|ref|NP_704131.1| 3'-5' exoribonuclease Csl4 homolog,...    40   0.048
gi|47193739|emb|CAF94941.1| unnamed protein product [Tetraodon n...    37   0.41
gi|17544090|ref|NP_500978.1| homolog of Yeast rrp4 like (34.1 kD...    35   0.90
gi|15922593|ref|NP_378262.1| 189aa long conserved hypothetical p...    34   2.0
gi|23119387|ref|ZP_00102495.1| COG0820: Predicted Fe-S-cluster r...    33   3.4
gi|334802|gb|AAA91940.1| pol polyprotein                               33   4.5
gi|18977941|ref|NP_579298.1| hypothetical protein PF1569 [Pyroco...    33   4.5
gi|47496962|dbj|BAD20032.1| HGWP repeat containing protein-like ...    33   4.5
gi|14591334|ref|NP_143412.1| hypothetical protein PH1551 [Pyroco...    33   5.9
gi|14520825|ref|NP_126300.1| hypothetical protein PAB0419 [Pyroc...    33   5.9
gi|11497822|ref|NP_069044.1| hypothetical protein [Archaeoglobus...    32   7.6
gi|13475607|ref|NP_107174.1| glycerol dehydratase large subunit ...    32   10.0


>gi|17555992|ref|NP_499416.1| exosomal core protein CSL4 like (23.3
           kD) (3M99) [Caenorhabditis elegans]
 gi|7509960|pir||T26982 hypothetical protein Y48A6B.5 -
           Caenorhabditis elegans
 gi|3881058|emb|CAA19529.1| Hypothetical protein Y48A6B.5
           [Caenorhabditis elegans]
          Length = 208

 Score =  373 bits (957), Expect = e-102
 Identities = 191/208 (91%), Positives = 191/208 (91%)
 Frame = +1

Query: 1   MLAETLVAPGDKVLDAIGEYRMGKGLYEANRRIFASVAGFVNVYGFRDKSDNLVQVIEVR 180
           MLAETLVAPGDKVLDAIGEYRMGKGLYEANRRIFASVAGFVNVYGFRDKSDNLVQVIEVR
Sbjct: 1   MLAETLVAPGDKVLDAIGEYRMGKGLYEANRRIFASVAGFVNVYGFRDKSDNLVQVIEVR 60

Query: 181 RSEDQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSAXXXXXXXXXXXX 360
           RSEDQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSA
Sbjct: 61  RSEDQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSALLPKKKLRPLEP 120

Query: 361 XXXXXFKNFVRPNDYILAKVCEDAEIKDKFVLSIAEDELGVVLCRGRFGEPMQKVDWNTV 540
                FKNFVRPNDYILAKVCEDAEIKDKFVLSIAEDELGVVLCRGRFGEPMQKVDWNTV
Sbjct: 121 ELSEPFKNFVRPNDYILAKVCEDAEIKDKFVLSIAEDELGVVLCRGRFGEPMQKVDWNTV 180

Query: 541 VSTRTGKTEPRKMAKVPQKCTLPTQSVA 624
           VSTRTGKTEPRKMAKVPQKCTLPTQSVA
Sbjct: 181 VSTRTGKTEPRKMAKVPQKCTLPTQSVA 208




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