Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= Y48A6B_5
(627 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17555992|ref|NP_499416.1| exosomal core protein CSL4 like (23... 373 e-102
gi|39591752|emb|CAE71330.1| Hypothetical protein CBG18230 [Caeno... 343 2e-93
gi|50415689|gb|AAH77633.1| Unknown (protein for MGC:86284) [Xeno... 89 9e-17
gi|22267446|ref|NP_079920.1| exosome component 1 [Mus musculus] ... 88 2e-16
gi|47223879|emb|CAG06056.1| unnamed protein product [Tetraodon n... 87 3e-16
gi|7705612|ref|NP_057130.1| exosomal core protein CSL4; homolog ... 86 4e-16
gi|24583644|ref|NP_609492.1| CG6249-PA [Drosophila melanogaster]... 84 2e-15
gi|38048131|gb|AAR09968.1| similar to Drosophila melanogaster CG... 79 5e-14
gi|48098586|ref|XP_394110.1| similar to ENSANGP00000010932 [Apis... 74 2e-12
gi|42568189|ref|NP_568559.2| exoribonuclease-related [Arabidopsi... 74 2e-12
gi|31224112|ref|XP_317396.1| ENSANGP00000006954 [Anopheles gambi... 69 7e-11
gi|32405764|ref|XP_323495.1| hypothetical protein ( (AL513463) c... 62 7e-09
gi|47848174|dbj|BAD22001.1| exoribonuclease-like [Oryza sativa (... 60 3e-08
gi|12833277|dbj|BAB22465.1| unnamed protein product [Mus musculus] 59 8e-08
gi|38104559|gb|EAA51106.1| hypothetical protein MG08628.4 [Magna... 55 1e-06
gi|29841415|gb|AAP06447.1| similar to NM_016046 homolog of yeast... 54 3e-06
gi|50749687|ref|XP_421712.1| PREDICTED: similar to exosome compo... 50 4e-05
gi|23491235|gb|EAA22823.1| 3'-5' exoribonuclease csl4 homolog (e... 49 8e-05
gi|9758066|dbj|BAB08645.1| unnamed protein product [Arabidopsis ... 47 4e-04
gi|50258403|gb|EAL21092.1| hypothetical protein CNBD4680 [Crypto... 46 5e-04
gi|50543262|ref|XP_499797.1| hypothetical protein [Yarrowia lipo... 46 7e-04
gi|50307887|ref|XP_453937.1| unnamed protein product [Kluyveromy... 44 0.003
gi|46125893|ref|XP_387500.1| hypothetical protein FG07324.1 [Gib... 44 0.003
gi|23612570|ref|NP_704131.1| 3'-5' exoribonuclease Csl4 homolog,... 40 0.048
gi|47193739|emb|CAF94941.1| unnamed protein product [Tetraodon n... 37 0.41
gi|17544090|ref|NP_500978.1| homolog of Yeast rrp4 like (34.1 kD... 35 0.90
gi|15922593|ref|NP_378262.1| 189aa long conserved hypothetical p... 34 2.0
gi|23119387|ref|ZP_00102495.1| COG0820: Predicted Fe-S-cluster r... 33 3.4
gi|334802|gb|AAA91940.1| pol polyprotein 33 4.5
gi|18977941|ref|NP_579298.1| hypothetical protein PF1569 [Pyroco... 33 4.5
gi|47496962|dbj|BAD20032.1| HGWP repeat containing protein-like ... 33 4.5
gi|14591334|ref|NP_143412.1| hypothetical protein PH1551 [Pyroco... 33 5.9
gi|14520825|ref|NP_126300.1| hypothetical protein PAB0419 [Pyroc... 33 5.9
gi|11497822|ref|NP_069044.1| hypothetical protein [Archaeoglobus... 32 7.6
gi|13475607|ref|NP_107174.1| glycerol dehydratase large subunit ... 32 10.0
>gi|17555992|ref|NP_499416.1| exosomal core protein CSL4 like (23.3
kD) (3M99) [Caenorhabditis elegans]
gi|7509960|pir||T26982 hypothetical protein Y48A6B.5 -
Caenorhabditis elegans
gi|3881058|emb|CAA19529.1| Hypothetical protein Y48A6B.5
[Caenorhabditis elegans]
Length = 208
Score = 373 bits (957), Expect = e-102
Identities = 191/208 (91%), Positives = 191/208 (91%)
Frame = +1
Query: 1 MLAETLVAPGDKVLDAIGEYRMGKGLYEANRRIFASVAGFVNVYGFRDKSDNLVQVIEVR 180
MLAETLVAPGDKVLDAIGEYRMGKGLYEANRRIFASVAGFVNVYGFRDKSDNLVQVIEVR
Sbjct: 1 MLAETLVAPGDKVLDAIGEYRMGKGLYEANRRIFASVAGFVNVYGFRDKSDNLVQVIEVR 60
Query: 181 RSEDQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSAXXXXXXXXXXXX 360
RSEDQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSA
Sbjct: 61 RSEDQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSALLPKKKLRPLEP 120
Query: 361 XXXXXFKNFVRPNDYILAKVCEDAEIKDKFVLSIAEDELGVVLCRGRFGEPMQKVDWNTV 540
FKNFVRPNDYILAKVCEDAEIKDKFVLSIAEDELGVVLCRGRFGEPMQKVDWNTV
Sbjct: 121 ELSEPFKNFVRPNDYILAKVCEDAEIKDKFVLSIAEDELGVVLCRGRFGEPMQKVDWNTV 180
Query: 541 VSTRTGKTEPRKMAKVPQKCTLPTQSVA 624
VSTRTGKTEPRKMAKVPQKCTLPTQSVA
Sbjct: 181 VSTRTGKTEPRKMAKVPQKCTLPTQSVA 208