Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= Y55B1BR_1
(2040 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17556242|ref|NP_497198.1| chromo domain containing protein (7... 393 e-108
gi|17540128|ref|NP_501232.1| chromo domain containing protein (4... 178 4e-43
gi|39593629|emb|CAE61921.1| Hypothetical protein CBG05917 [Caeno... 152 4e-35
gi|17540120|ref|NP_501231.1| chromo domain containing protein (3... 121 7e-26
gi|39588136|emb|CAE68060.1| Hypothetical protein CBG13680 [Caeno... 120 2e-25
gi|39593628|emb|CAE61920.1| Hypothetical protein CBG05916 [Caeno... 109 3e-22
gi|19114361|ref|NP_593449.1| swi6 protein; repression of silent ... 56 4e-06
gi|4325130|gb|AAD17276.1| dMi-2 protein [Drosophila melanogaster] 45 0.009
gi|24667055|ref|NP_649154.2| CG8103-PA [Drosophila melanogaster]... 45 0.009
gi|38074891|ref|XP_356668.1| similar to chromobox homolog 3; het... 43 0.025
gi|7109239|gb|AAF36692.1| programmed DNA degradation protein 3 [... 43 0.025
gi|34870132|ref|XP_344068.1| similar to Chromobox protein homolo... 43 0.025
gi|41054315|ref|NP_956040.1| chromobox homolog 1 (Drosophila HP1... 42 0.043
gi|17985985|ref|NP_536794.1| CG10683-PA [Drosophila melanogaster... 42 0.043
gi|34868500|ref|XP_345531.1| similar to chromobox homolog 3; het... 42 0.073
gi|7416937|gb|AAF62370.1| heterochromatin-like protein 1 [Homo s... 42 0.073
gi|21903396|sp|Q13185|CBX3_HUMAN Chromobox protein homolog 3 (He... 42 0.073
gi|15082258|ref|NP_009207.2| chromobox homolog 3; heterochromati... 42 0.073
gi|48104926|ref|XP_392987.1| similar to heterochromatin protein ... 42 0.073
gi|9409730|emb|CAB98195.1| heterochromatin protein [Clytus arietis] 41 0.13
gi|9409731|emb|CAB98196.1| heterochromatin protein [Clytus arietis] 41 0.13
gi|38089724|ref|XP_287872.2| similar to chromobox homolog 3; het... 40 0.16
gi|39583187|emb|CAE61405.1| Hypothetical protein CBG05267 [Caeno... 40 0.21
gi|38105899|gb|EAA52272.1| hypothetical protein MG04964.4 [Magna... 40 0.28
gi|21903394|sp|P23198|CBX3_MOUSE Chromobox protein homolog 3 (He... 39 0.36
gi|19113600|ref|NP_596808.1| pleiotrophic transcriptional silenc... 39 0.36
gi|29468101|gb|AAO39117.1| heterochromatin protein 1 gamma [Xeno... 39 0.36
gi|2454534|gb|AAC60299.1| heterochromatin protein 1 gamma [Xenop... 39 0.36
gi|28302266|gb|AAH46570.1| Cbx3-prov protein [Xenopus laevis] 39 0.48
gi|33115171|gb|AAH55290.1| Unknown (protein for MGC:62656) [Mus ... 39 0.48
gi|12856936|dbj|BAB30836.1| unnamed protein product [Mus musculus] 39 0.48
gi|5803076|ref|NP_006798.1| chromobox homolog 1 (HP1 beta homolo... 39 0.48
gi|34870142|ref|XP_221817.2| similar to chromobox homolog 3; het... 39 0.62
gi|48249223|gb|AAT40864.1| heterochromatin protein 1 beta [Crice... 39 0.62
gi|34870134|ref|XP_344069.1| similar to heterochromatin-like pro... 38 0.81
gi|34873487|ref|XP_340886.1| similar to Chromobox protein homolo... 38 0.81
gi|45382847|ref|NP_989974.1| chromobox protein (CHCB2) [Gallus g... 38 1.1
gi|1773227|gb|AAB48101.1| HP1Hs-gamma >gnl|BL_ORD_ID|45793 gi|57... 38 1.1
gi|38108609|gb|EAA54603.1| hypothetical protein MG05395.4 [Magna... 38 1.1
gi|49256331|gb|AAH74418.1| Unknown (protein for MGC:84435) [Xeno... 37 1.4
gi|32766679|gb|AAH55212.1| Zgc:76902 protein [Danio rerio] 37 1.4
gi|34870094|ref|XP_221854.2| similar to chromobox homolog 3; het... 37 1.4
gi|32411587|ref|XP_326274.1| hypothetical protein [Neurospora cr... 37 1.4
gi|45383494|ref|NP_989663.1| chromobox homolog 1 (HP1 beta homol... 37 1.4
gi|32405446|ref|XP_323336.1| predicted protein [Neurospora crass... 37 1.8
gi|38374203|gb|AAR19293.1| heterochromatin protein one [Neurospo... 37 1.8
gi|47208108|emb|CAF90384.1| unnamed protein product [Tetraodon n... 37 1.8
gi|31197819|ref|XP_307857.1| ENSANGP00000018710 [Anopheles gambi... 37 1.8
gi|34857217|ref|XP_218790.2| similar to Chromodomain-helicase-DN... 37 2.4
gi|50344834|ref|NP_001002090.1| zgc:86924 [Danio rerio] >gnl|BL_... 37 2.4
gi|50257651|gb|EAL20356.1| hypothetical protein CNBF1660 [Crypto... 36 3.1
gi|48100394|ref|XP_392619.1| similar to ENSANGP00000015659 [Apis... 36 3.1
gi|50258480|gb|EAL21169.1| hypothetical protein CNBD5450 [Crypto... 36 3.1
gi|50254424|gb|EAL17174.1| hypothetical protein CNBN1990 [Crypto... 36 3.1
gi|24654498|ref|NP_611240.1| CG18186-PA [Drosophila melanogaster... 36 3.1
gi|6434313|emb|CAB54267.2| Hypothetical protein K01G5.2c [Caenor... 36 4.0
gi|7505082|pir||T23198 hypothetical protein K01G5.2b - Caenorhab... 36 4.0
gi|25149949|ref|NP_499372.2| heterochromatin Protein Like, HP1 (... 36 4.0
gi|17553970|ref|NP_499373.1| heterochromatin Protein Like, HP1 (... 36 4.0
gi|7505083|pir||T23202 hypothetical protein K01G5.2c - Caenorhab... 36 4.0
gi|47216944|emb|CAG04886.1| unnamed protein product [Tetraodon n... 35 5.3
gi|39596077|emb|CAE69713.1| Hypothetical protein CBG15983 [Caeno... 35 5.3
gi|47216948|emb|CAG04890.1| unnamed protein product [Tetraodon n... 35 5.3
gi|6680860|ref|NP_031650.1| chromobox homolog 3 (Drosophila HP1 ... 35 5.3
gi|32417860|ref|XP_329408.1| predicted protein [Neurospora crass... 35 5.3
gi|5917756|gb|AAD56024.1| chromodomain helicase DNA binding prot... 35 5.3
gi|4165194|emb|CAA08807.1| Pol protein [Drosophila melanogaster] 35 5.3
gi|20149951|pdb|1GUW|A Chain A, Structure Of The Chromodomain Fr... 35 5.3
gi|3402056|pdb|1AP0| Structure Of The Chromatin Binding (Chromo... 35 5.3
gi|47211795|emb|CAF93709.1| unnamed protein product [Tetraodon n... 35 6.9
gi|22135459|gb|AAM93210.1| chromdomain-containing protein CRD101... 35 6.9
gi|47211792|emb|CAF93706.1| unnamed protein product [Tetraodon n... 35 6.9
gi|47211793|emb|CAF93707.1| unnamed protein product [Tetraodon n... 35 6.9
gi|49102907|ref|XP_411103.1| hypothetical protein AN6966.2 [Aspe... 35 6.9
gi|38374201|gb|AAR19292.1| heterochromatin protein one [Neurospo... 35 6.9
gi|47213749|emb|CAF96414.1| unnamed protein product [Tetraodon n... 35 9.0
gi|42571545|ref|NP_973863.1| brassinosteroid signalling positive... 35 9.0
gi|6651069|gb|AAF22161.1| 107 protein [Arabidopsis thaliana] 35 9.0
gi|18394728|ref|NP_564081.1| brassinosteroid signalling positive... 35 9.0
gi|21592457|gb|AAM64408.1| unknown [Arabidopsis thaliana] 35 9.0
gi|23619078|ref|NP_705040.1| hypothetical protein [Plasmodium fa... 35 9.0
>gi|17556242|ref|NP_497198.1| chromo domain containing protein (77.9
kD) (3B49) [Caenorhabditis elegans]
gi|15150696|gb|AAK85503.1| Hypothetical protein Y55B1BR.3
[Caenorhabditis elegans]
Length = 679
Score = 393 bits (1010), Expect = e-108
Identities = 190/190 (100%), Positives = 190/190 (100%)
Frame = +1
Query: 1 MARKSKGSRSSTRAVKQTDHFQVDVKLQSRPDHVRAPRANNENVNYTPVKEAKIQKILDH 180
MARKSKGSRSSTRAVKQTDHFQVDVKLQSRPDHVRAPRANNENVNYTPVKEAKIQKILDH
Sbjct: 1 MARKSKGSRSSTRAVKQTDHFQVDVKLQSRPDHVRAPRANNENVNYTPVKEAKIQKILDH 60
Query: 181 QLYNTHYVEYQVEMSDGTEEMLTEFDFDNKKTQKMLAEYKFKVTELEDDGSKEYVVEKIV 360
QLYNTHYVEYQVEMSDGTEEMLTEFDFDNKKTQKMLAEYKFKVTELEDDGSKEYVVEKIV
Sbjct: 61 QLYNTHYVEYQVEMSDGTEEMLTEFDFDNKKTQKMLAEYKFKVTELEDDGSKEYVVEKIV 120
Query: 361 AHRYPNDRLNQPLYLVMWRGFPDPVSNTEMWGEELENCQELLDAYNEEHDIDLSKTVMNK 540
AHRYPNDRLNQPLYLVMWRGFPDPVSNTEMWGEELENCQELLDAYNEEHDIDLSKTVMNK
Sbjct: 121 AHRYPNDRLNQPLYLVMWRGFPDPVSNTEMWGEELENCQELLDAYNEEHDIDLSKTVMNK 180
Query: 541 PPKKSKHQDT 570
PPKKSKHQDT
Sbjct: 181 PPKKSKHQDT 190
Score = 61.6 bits (148), Expect = 7e-08
Identities = 49/181 (27%), Positives = 49/181 (27%)
Frame = +1
Query: 1438 PIKKDKTPRKYSRKSAAKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXX 1617
PIKKDKTPRKYSRKSAAKV AA
Sbjct: 480 PIKKDKTPRKYSRKSAAKVESTESSGNEEEEEVEESPKKKGKTPRKSSKKSAAVEESDNE 539
Query: 1618 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKNDKTLRKSPRKPAAKV 1797
PKKNDKTLRKSPRKPAAKV
Sbjct: 540 EEDVEESPKKRTSPRKSSKKRAAKEESEESSDNEVEEVEDSPKKNDKTLRKSPRKPAAKV 599
Query: 1798 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGSHTES 1977
TNGSHTES
Sbjct: 600 ESEESFGNEEEEEVEESPKKKGKTPRKSSKKSAAKEESEESSDDEEEEQAEETNGSHTES 659
Query: 1978 P 1980
P
Sbjct: 660 P 660