Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= Y76B12C_1
         (759 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17544226|ref|NP_500151.1| putative prenylated nuclear protein...    91   3e-17
gi|9837383|gb|AAG00553.1| retinitis pigmentosa GTPase regulator ...    41   0.024
gi|46228936|gb|EAK89785.1| hypothetical protein with signal pept...    39   0.090
gi|32398688|emb|CAD98648.1| retinitis pigmentosa GTPase regulato...    39   0.090
gi|9837381|gb|AAG00552.1| retinitis pigmentosa GTPase regulator ...    38   0.20
gi|15228477|ref|NP_189519.1| expressed protein [Arabidopsis thal...    37   0.34
gi|10140993|ref|NP_065570.1| putative immediate early protein [A...    37   0.45
gi|30526291|gb|AAP32203.1| latency associated nuclear antigen [S...    36   1.00
gi|37532950|ref|NP_920777.1| hypothetical protein [Oryza sativa ...    36   1.00
gi|30348579|emb|CAC84371.1| hypothetical protein [Saimiriine her...    35   1.3
gi|9837379|gb|AAG00551.1| retinitis pigmentosa GTPase regulator ...    35   1.3
gi|17566482|ref|NP_507901.1| plasmodium falciparum trophozoite a...    35   1.3
gi|20452161|gb|AAM22073.1| retinitis pigmentosa GTPase regulator...    34   2.9
gi|23490690|gb|EAA22406.1| hypothetical protein [Plasmodium yoel...    33   5.0
gi|37498977|gb|AAQ91579.1| collagen-like protein 3 [Streptococcu...    33   5.0
gi|49388905|dbj|BAD26130.1| hypothetical protein [Oryza sativa (...    33   5.0
gi|32477297|ref|NP_870291.1| putative ATP-dependent RNA helicase...    33   5.0
gi|21361025|gb|AAM49782.1| DEAD-box RNA helicase [Drosophila vir...    33   5.0
gi|37498968|gb|AAQ91575.1| collagen-like protein 3 [Streptococcu...    33   6.5
gi|345616|pir||B44841 low molecular weight neurofilament protein...    33   6.5
gi|548352|sp|P35616|NFL_XENLA Neurofilament triplet L protein (N...    33   6.5
gi|19074606|ref|NP_586112.1| hypothetical protein [Encephalitozo...    33   6.5
gi|19075009|ref|NP_586515.1| hypothetical protein [Encephalitozo...    33   6.5
gi|45550403|ref|NP_610577.2| CG12907-PA [Drosophila melanogaster...    33   8.5
gi|13540523|ref|NP_110390.1| nucleosomal binding protein 1 [Homo...    33   8.5


>gi|17544226|ref|NP_500151.1| putative prenylated nuclear protein,
           with 2 coiled coil-4 domains (4C736) [Caenorhabditis
           elegans]
 gi|7105679|gb|AAF36065.1| Hypothetical protein Y76B12C.4
           [Caenorhabditis elegans]
          Length = 252

 Score = 90.5 bits (223), Expect = 3e-17
 Identities = 45/58 (77%), Positives = 45/58 (77%)
 Frame = -1

Query: 759 MEAHRAEQPQCTKSGKVILKPGYDMTDGLSEIDDWAXXXXXXXXXXXXXPREGPKLID 586
           MEAHRAEQPQCTKSGKVILKPGYDMTDGLSEIDDWA             PREGPKLID
Sbjct: 1   MEAHRAEQPQCTKSGKVILKPGYDMTDGLSEIDDWAPEKKKRAKKVPSKPREGPKLID 58



 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 42/121 (34%), Positives = 42/121 (34%)
 Frame = -1

Query: 366 APREKETMEKKQKSKDEDEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDXXXXXXXX 187
           APREKETMEKKQKSKDEDEGD                            KID
Sbjct: 132 APREKETMEKKQKSKDEDEGDLSKEEILKIKKALKKEKKLRDRERLKTEKIDKSTETKNS 191

Query: 186 XXXXXXXXXXXXXXXXXEAAVATGTSGSXXXXXXXXXXXXXXXXXXXXXXXXXXKVCCTI 7
                            EAAVATGTSGS                          KVCCTI
Sbjct: 192 TTPSTEKEKSSMKKTKKEAAVATGTSGSAKKKVRPPAPPPPPTKRKPKDIRAKKKVCCTI 251

Query: 6   L 4
           L
Sbjct: 252 L 252




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