Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= Y76B12C_7
         (4365 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25148482|ref|NP_500157.2| cleavage polyadenylation specific f...  2777   0.0
gi|39594178|emb|CAE70288.1| Hypothetical protein CBG16808 [Caeno...  2364   0.0
gi|23503048|sp|Q10570|CPSA_HUMAN Cleavage and polyadenylation sp...   767   0.0
gi|16751835|ref|NP_444423.1| cleavage and polyadenylation specif...   766   0.0
gi|27807297|ref|NP_777145.1| cleavage and polyadenylation specif...   763   0.0
gi|9558725|ref|NP_037423.1| cleavage and polyadenylation specifi...   763   0.0
gi|34867012|ref|XP_345850.1| similar to cleavage and polyadenyla...   762   0.0
gi|47217773|emb|CAG05995.1| unnamed protein product [Tetraodon n...   719   0.0
gi|45552619|ref|NP_995833.1| CG10110-PA [Drosophila melanogaster...   696   0.0
gi|31200727|ref|XP_309311.1| ENSANGP00000018461 [Anopheles gambi...   678   0.0
gi|24653655|ref|NP_725397.1| CG10110-PB [Drosophila melanogaster...   649   0.0
gi|49619065|gb|AAT68117.1| cleavage and polyadenylation specific...   542   e-152
gi|33411762|emb|CAD58786.1| cleavage and polyadenylation specifi...   401   e-110
gi|9794908|gb|AAF98388.1| cleavage and polyadenylation specifici...   384   e-105
gi|19112233|ref|NP_595441.1| putative cleavage and polyadenylati...   362   6e-98
gi|9794904|gb|AAF98386.1| cleavage and polyadenylation specifici...   268   9e-70
gi|38014465|gb|AAH60475.1| LOC398931 protein [Xenopus laevis]         252   5e-65
gi|49619061|gb|AAT68115.1| cleavage and polyadenylation specific...   229   3e-58
gi|18202900|sp|Q9FGR0|CPSA_ARATH Probable cleavage and polyadeny...   216   4e-54
gi|24415580|gb|AAN41460.1| putative cleavage and polyadenylation...   215   9e-54
gi|30696088|ref|NP_199979.2| cleavage and polyadenylation specif...   215   9e-54
gi|50257351|gb|EAL20060.1| hypothetical protein CNBF3860 [Crypto...   203   3e-50
gi|38345987|emb|CAD39979.2| OSJNBa0032B23.5 [Oryza sativa (japon...   201   2e-49
gi|50427411|ref|XP_462318.1| unnamed protein product [Debaryomyc...   167   2e-39
gi|50552095|ref|XP_503522.1| hypothetical protein [Yarrowia lipo...   166   6e-39
gi|32417588|ref|XP_329272.1| hypothetical protein [Neurospora cr...   164   1e-38
gi|49087160|ref|XP_405550.1| hypothetical protein AN1413.2 [Aspe...   146   5e-33
gi|46120520|ref|XP_385083.1| hypothetical protein FG04907.1 [Gib...   140   4e-31
gi|46442380|gb|EAL01670.1| hypothetical protein CaO19.2760 [Cand...   139   6e-31
gi|46442138|gb|EAL01430.1| hypothetical protein CaO19.10274 [Can...   139   8e-31
gi|49077388|ref|XP_402559.1| hypothetical protein UM04944.1 [Ust...   135   1e-29
gi|12697776|dbj|BAB21613.1| polyadenylation specificity factor [...   134   3e-29
gi|50288865|ref|XP_446862.1| unnamed protein product [Candida gl...   127   3e-27
gi|38102215|gb|EAA49081.1| hypothetical protein MG00739.4 [Magna...   124   2e-26
gi|6320507|ref|NP_010587.1| Functions in cleavage of 3'-ends of ...   121   2e-25
gi|50305395|ref|XP_452657.1| unnamed protein product [Kluyveromy...   118   1e-24
gi|45184764|ref|NP_982482.1| AAL060Wp [Eremothecium gossypii] >g...   111   2e-22
gi|9794906|gb|AAF98387.1| cleavage and polyadenylation specifici...   110   2e-22
gi|33411764|emb|CAD58787.1| cleavage and polyadenylation specifi...   106   6e-21
gi|41055225|ref|NP_956920.1| hypothetical protein MGC63840 [Dani...   102   6e-20
gi|13435359|ref|NP_001914.2| damage-specific DNA binding protein...   100   3e-19
gi|16197726|emb|CAC94909.1| damaged-DNA recognition protein 1 [M...    99   7e-19
gi|12643730|sp|Q16531|DDB1_HUMAN DNA damage binding protein 1 (D...    99   7e-19
gi|418316|sp|P33194|DDB1_CERAE DNA damage binding protein 1 (Dam...    99   7e-19
gi|2632123|emb|CAA05770.1| Xeroderma Pigmentosum Group E Complem...    99   7e-19
gi|47230701|emb|CAF99894.1| unnamed protein product [Tetraodon n...    98   2e-18
gi|34861615|ref|XP_342025.1| similar to DNA damage binding prote...    98   2e-18
gi|45383688|ref|NP_989547.1| damage-specific DNA binding protein...    98   2e-18
gi|7657011|ref|NP_056550.1| damage specific DNA binding protein ...    97   3e-18
gi|11275251|pir||JC7152 UV-damaged DNA-binding 127K protein - mouse    97   3e-18
gi|38303806|gb|AAH61946.1| MGC68476 protein [Xenopus laevis]           97   3e-18
gi|12082087|dbj|BAB20761.1| UV-damaged DNA binding protein [Oryz...    97   4e-18
gi|48475231|gb|AAT44300.1| putative DNA damage binding protein 1...    97   4e-18
gi|25282451|ref|NP_741992.1| damage-specific DNA binding protein...    97   4e-18
gi|5353754|gb|AAD42230.1| damage-specific DNA binding protein 1 ...    96   6e-18
gi|21357503|ref|NP_650257.1| CG7769-PA [Drosophila melanogaster]...    94   3e-17
gi|50363265|gb|AAT75335.1| cleavage polyadenylation specificity ...    93   6e-17
gi|15235577|ref|NP_192451.1| UV-damaged DNA-binding protein, put...    83   7e-14
gi|31206999|ref|XP_312466.1| ENSANGP00000003051 [Anopheles gambi...    83   7e-14
gi|38455768|gb|AAR20885.1| UV damaged DNA binding protein 1 [Lyc...    82   9e-14
gi|49484911|gb|AAT66742.1| UV-damaged DNA binding protein 1 [Lyc...    82   9e-14
gi|7440006|pir||T04941 UV-damaged DNA-binding protein homolog F7...    78   2e-12
gi|15233515|ref|NP_193842.1| UV-damaged DNA-binding protein, put...    78   2e-12
gi|17541566|ref|NP_502299.1| CPSF A subunit C-terminal (125.7 kD...    78   2e-12
gi|48106082|ref|XP_396048.1| similar to ENSANGP00000003051 [Apis...    77   5e-12
gi|18377609|gb|AAL66955.1| putative UV-damaged DNA binding facto...    74   4e-11
gi|39593892|emb|CAE62185.1| Hypothetical protein CBG06232 [Caeno...    73   7e-11
gi|46442139|gb|EAL01431.1| hypothetical protein CaO19.10275 [Can...    72   9e-11
gi|19074861|ref|NP_586367.1| CLEAVAGE AND POLYADENYLATION SPECIF...    72   1e-10
gi|25294327|pir||A88855 protein M18.5 [imported] - Caenorhabditi...    62   1e-07
gi|2130171|pir||S71092 UV-damaged DNA binding protein repE - sli...    62   2e-07
gi|50801619|ref|XP_428554.1| PREDICTED: hypothetical protein XP_...    60   6e-07
gi|19115326|ref|NP_594414.1| prp12p/sap130. [Schizosaccharomyces...    58   2e-06
gi|50257071|gb|EAL19786.1| hypothetical protein CNBG0790 [Crypto...    53   7e-05
gi|46439394|gb|EAK98712.1| hypothetical protein CaO19.12846 [Can...    52   2e-04
gi|49096258|ref|XP_409589.1| hypothetical protein AN5452.2 [Aspe...    51   2e-04
gi|19114492|ref|NP_593580.1| putative (Xeroderma pigmentosum-gro...    51   3e-04
gi|47087273|ref|NP_998668.1| zgc:55440 [Danio rerio] >gnl|BL_ORD...    48   0.002
gi|32403738|ref|XP_322482.1| hypothetical protein [Neurospora cr...    48   0.002
gi|47212603|emb|CAF93045.1| unnamed protein product [Tetraodon n...    47   0.004
gi|39595801|emb|CAE67304.1| Hypothetical protein CBG12757 [Caeno...    47   0.004
gi|50753573|ref|XP_414047.1| PREDICTED: similar to KIAA0017 prot...    46   0.007
gi|40788938|dbj|BAA32662.2| KIAA0017 protein [Homo sapiens]            46   0.009
gi|40254849|ref|NP_036558.2| splicing factor 3b, subunit 3, 130k...    46   0.009
gi|46362557|gb|AAH68974.1| Splicing factor 3b, subunit 3, 130kDa...    46   0.009
gi|19527174|ref|NP_598714.1| splicing factor 3b, subunit 3, 130k...    46   0.009
gi|37359734|dbj|BAC97845.1| mKIAA0017 protein [Mus musculus]           46   0.009
gi|34851925|ref|XP_214697.2| similar to RIKEN cDNA 1810061H24 [R...    46   0.009
gi|17508021|ref|NP_491953.1| splicing factor (1H409) [Caenorhabd...    45   0.020
gi|26338446|dbj|BAC32894.1| unnamed protein product [Mus musculus]     43   0.077
gi|24639885|ref|NP_572231.1| CG15781-PA [Drosophila melanogaster...    42   0.17
gi|31213215|ref|XP_315551.1| ENSANGP00000017759 [Anopheles gambi...    40   0.38
gi|38110822|gb|EAA56486.1| hypothetical protein MG06457.4 [Magna...    40   0.65
gi|31201487|ref|XP_309691.1| ENSANGP00000012571 [Anopheles gambi...    39   0.85
gi|32411959|ref|XP_326460.1| hypothetical protein [Neurospora cr...    39   1.1
gi|50427669|ref|XP_462447.1| unnamed protein product [Debaryomyc...    39   1.5
gi|19114436|ref|NP_593524.1| ras-related protein rab-7 [Schizosa...    39   1.5
gi|24654874|ref|NP_728546.1| CG13900-PA [Drosophila melanogaster...    38   2.5
gi|48847144|ref|ZP_00301401.1| COG1157: Flagellar biosynthesis/t...    37   3.2
gi|16077984|ref|NP_388800.1| yhcR [Bacillus subtilis subsp. subt...    37   3.2
gi|49899749|gb|AAH76786.1| Unknown (protein for MGC:83700) [Xeno...    37   5.5
gi|23613154|ref|NP_703476.1| hypothetical protein [Plasmodium fa...    37   5.5
gi|46121747|ref|XP_385428.1| hypothetical protein FG05252.1 [Gib...    37   5.5
gi|2127423|pir||B40626 probable 2,3-dihydrodipicolinate N-C6-lya...    36   7.2
gi|46107840|ref|XP_380979.1| hypothetical protein FG00803.1 [Gib...    36   7.2
gi|45200913|ref|NP_986483.1| AGL184Wp [Eremothecium gossypii] >g...    36   9.4
gi|24664561|ref|NP_524757.1| CG6890-PA [Drosophila melanogaster]...    36   9.4


>gi|25148482|ref|NP_500157.2| cleavage polyadenylation specific factor
            1 160kDa (4C774) [Caenorhabditis elegans]
 gi|22096347|sp|Q9N4C2|CPSA_CAEEL Probable cleavage and
            polyadenylation specificity factor, 160 kDa subunit (CPSF
            160 kDa subunit)
 gi|16604243|gb|AAF36067.2| Hypothetical protein Y76B12C.7
            [Caenorhabditis elegans]
          Length = 1454

 Score = 2777 bits (7198), Expect = 0.0
 Identities = 1402/1454 (96%), Positives = 1402/1454 (96%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVNPYVLKEPGEDNEEW 4186
            MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVNPYVLKEPGEDNEEW
Sbjct: 1    MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVNPYVLKEPGEDNEEW 60

Query: 4185 QQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQTIS 4006
            QQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQTIS
Sbjct: 61   QQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQTIS 120

Query: 4005 LHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLK 3826
            LHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLK
Sbjct: 121  LHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLK 180

Query: 3825 QIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAV 3646
            QIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAV
Sbjct: 181  QIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAV 240

Query: 3645 VWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLKD 3466
            VWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLKD
Sbjct: 241  VWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLKD 300

Query: 3465 LKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYS 3286
            LKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYS
Sbjct: 301  LKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYS 360

Query: 3285 LTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYG 3106
            LTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYG
Sbjct: 361  LTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYG 420

Query: 3105 GAXXXXXXXXXXXXXESLQFRELDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLV 2926
            GA             ESLQFRELDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLV
Sbjct: 421  GAIEEQQNDDDEQIDESLQFRELDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLV 480

Query: 2925 TASGHGKNGALCVHQRSLRPEIITSSLLEGAEQLWAVGRKENESHKYLIVSRVRSTXXXX 2746
            TASGHGKNGALCVHQRSLRPEIITSSLLEGAEQLWAVGRKENESHKYLIVSRVRST
Sbjct: 481  TASGHGKNGALCVHQRSLRPEIITSSLLEGAEQLWAVGRKENESHKYLIVSRVRSTLILE 540

Query: 2745 XXXXXXXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVI 2566
                       LFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVI
Sbjct: 541  LGEELVELEEQLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVI 600

Query: 2565 QASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIY 2386
            QASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIY
Sbjct: 601  QASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIY 660

Query: 2385 ADASEIMKFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDET 2206
            ADASEIMKFAAAEKSM       GEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDET
Sbjct: 661  ADASEIMKFAAAEKSMGGGGGGDGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDET 720

Query: 2205 IMEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVSH 2026
            IMEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVSH
Sbjct: 721  IMEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVSH 780

Query: 2025 ENGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPTDEAE 1846
            ENGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTV                 ASVPTDEAE
Sbjct: 781  ENGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVEEEEKERKAKAQQAAKEASVPTDEAE 840

Query: 1845 QLNTEMKQLCERVLEAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPIPGHLGISFRK 1666
            QLNTEMKQLCERVLEAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPIPGHLGISFRK
Sbjct: 841  QLNTEMKQLCERVLEAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPIPGHLGISFRK 900

Query: 1665 LPHFICLRTSSHLNSDGKRAPFEMKINNGKRFSLIHPFERVSSVNNGVMIVGAVPTLLVY 1486
            LPHFICLRTSSHLNSDGKRAPFEMKINNGKRFSLIHPFERVSSVNNGVMIVGAVPTLLVY
Sbjct: 901  LPHFICLRTSSHLNSDGKRAPFEMKINNGKRFSLIHPFERVSSVNNGVMIVGAVPTLLVY 960

Query: 1485 GAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDYEMPYPVK 1306
            GAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDYEMPYPVK
Sbjct: 961  GAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDYEMPYPVK 1020

Query: 1305 KIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFVLPAPPKY 1126
            KIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFVLPAPPKY
Sbjct: 1021 KIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFVLPAPPKY 1080

Query: 1125 TLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVNNYGEEVL 946
            TLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVNNYGEEVL
Sbjct: 1081 TLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVNNYGEEVL 1140

Query: 945  VRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQ 766
            VRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQ
Sbjct: 1141 VRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQ 1200

Query: 765  FKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRKCA 586
            FKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRKCA
Sbjct: 1201 FKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRKCA 1260

Query: 585  QPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNINAFV 406
            QPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNINAFV
Sbjct: 1261 QPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNINAFV 1320

Query: 405  RLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFIGSVT 226
            RLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFIGSVT
Sbjct: 1321 RLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFIGSVT 1380

Query: 225  PQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHI 46
            PQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHI
Sbjct: 1381 PQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHI 1440

Query: 45   IDDLMQLRRMAFYY 4
            IDDLMQLRRMAFYY
Sbjct: 1441 IDDLMQLRRMAFYY 1454


>gi|39594178|emb|CAE70288.1| Hypothetical protein CBG16808
            [Caenorhabditis briggsae]
          Length = 1454

 Score = 2364 bits (6126), Expect = 0.0
 Identities = 1172/1461 (80%), Positives = 1299/1461 (88%), Gaps = 7/1461 (0%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVNPYVLKEPGEDNEEW 4186
            MYGYLRETDDSTAIN+SAYGKFLPGENTGFQLLTIGAKF+RIFRVNPYVLKEPGEDNEEW
Sbjct: 1    MYGYLRETDDSTAINYSAYGKFLPGENTGFQLLTIGAKFLRIFRVNPYVLKEPGEDNEEW 60

Query: 4185 QQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQTIS 4006
            QQKTKLECMFSCRLLNKC S+AVARVPQLPDQDSILMTFDDAKLSIV++NEKERNMQTIS
Sbjct: 61   QQKTKLECMFSCRLLNKCQSVAVARVPQLPDQDSILMTFDDAKLSIVAVNEKERNMQTIS 120

Query: 4005 LHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLK 3826
            LHAFENEYLRDGF  +F PP+VR+DP+NRCAA LVYGKHIAILPFHENSKRI SY+IPLK
Sbjct: 121  LHAFENEYLRDGFTTYFNPPIVRTDPANRCAASLVYGKHIAILPFHENSKRILSYIIPLK 180

Query: 3825 QIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAV 3646
            QIDPRLDN+ADMVFL+GYYEPTILFLYEP+QTTPGRACVRYDTMCIMGVSVNIVDRQFAV
Sbjct: 181  QIDPRLDNVADMVFLEGYYEPTILFLYEPLQTTPGRACVRYDTMCIMGVSVNIVDRQFAV 240

Query: 3645 VWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLKD 3466
            VWQTANLPMDC+ LL IPKPLGGA+VFGSNT+VYLNQAVPPCG+VLNSCYDGFTKFPLKD
Sbjct: 241  VWQTANLPMDCNSLLSIPKPLGGAVVFGSNTIVYLNQAVPPCGIVLNSCYDGFTKFPLKD 300

Query: 3465 LKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYS 3286
            +KHLKMTLDCSTSVYMEDGRIAVGSR+GDL+LLRL+TSSGG TVKSLEFSKV +TSIA++
Sbjct: 301  MKHLKMTLDCSTSVYMEDGRIAVGSREGDLYLLRLVTSSGGATVKSLEFSKVCDTSIAFT 360

Query: 3285 LTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYG 3106
            LTVCAPGHLFVGSRLGDSQLLEYTLLK T++ A K+ +++ ++P+  EIELDEDD+ELYG
Sbjct: 361  LTVCAPGHLFVGSRLGDSQLLEYTLLKVTKESA-KKQRLEQQNPS--EIELDEDDIELYG 417

Query: 3105 GAXXXXXXXXXXXXXESLQFRELDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLV 2926
            GA             ESLQFRELDRL NVGPVKSMC GRPNYMSNDL+DAKR+DPVFDLV
Sbjct: 418  GAIEMQQNDDDEQISESLQFRELDRLLNVGPVKSMCFGRPNYMSNDLIDAKRKDPVFDLV 477

Query: 2925 TASGHGKNGALCVHQRSLRPEIITSSLLEGAEQLWAVGRKENESHKYLIVSRVRSTXXXX 2746
            TASGHGKNGALCVHQRS+RPEIITSSLLEGAEQLWAVGRKENESHKYLIVSRVRST
Sbjct: 478  TASGHGKNGALCVHQRSMRPEIITSSLLEGAEQLWAVGRKENESHKYLIVSRVRSTLILE 537

Query: 2745 XXXXXXXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVI 2566
                       LFVT EPTVAAGEL QGALAVQVTSTCIALVTDGQQMQEVHIDSNFPV+
Sbjct: 538  LGEELVELEEQLFVTNEPTVAAGELLQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVV 597

Query: 2565 QASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIY 2386
            QASIVDPYVA+LTQNGR LLYEL MEPYV LREV+++ TSFAT+  + Q  TQLTS+SIY
Sbjct: 598  QASIVDPYVAVLTQNGRPLLYELAMEPYVHLREVNVNETSFATF--SEQISTQLTSVSIY 655

Query: 2385 ADASEIMKFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDET 2206
            +DAS+IMK    +                    +KKE  ++  +L+GEDDDFLYGD +E
Sbjct: 656  SDASQIMKKNTVDGRDEKPENAAENGHHVAVPKIKKEIPDDDAMLYGEDDDFLYGDAEED 715

Query: 2205 IMEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVSH 2026
              E     E+GE++ +  NTRKRKRLGHDAI SSRGGEQSDAIDPTRT+SSI+HWL+V+H
Sbjct: 716  --EPMVAAESGESSTRLQNTRKRKRLGHDAIMSSRGGEQSDAIDPTRTYSSITHWLVVAH 773

Query: 2025 ENGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPT---- 1858
            +NGR++IHSLP++E+VYQIGRFSNVPELLVD+TV
Sbjct: 774  DNGRITIHSLPDLELVYQIGRFSNVPELLVDMTVEEEEKEKKAKQTAAQEKEKETEKKKD 833

Query: 1857 ---DEAEQLNTEMKQLCERVLEAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPIPGH 1687
               +E +Q+N+EMK+LCE+V+EAQIVGMGINQAHP+L+AI+DE+VVLYEMF+S NP PGH
Sbjct: 834  DAKNEEDQVNSEMKKLCEKVVEAQIVGMGINQAHPVLIAIIDEEVVLYEMFASYNPQPGH 893

Query: 1686 LGISFRKLPHFICLRTSSHLNSDGKRAPFEMKINNGKRFSLIHPFERVSSVNNGVMIVGA 1507
            LG++FRKLPH I LRTS ++N DGKRAPFEM++ +GKR++LIHPFER+SS+NNGVMI GA
Sbjct: 894  LGVAFRKLPHLIGLRTSPYVNIDGKRAPFEMEMEHGKRYTLIHPFERISSINNGVMIGGA 953

Query: 1506 VPTLLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDY 1327
            VPTLLVYGAWGGMQTHQMT+DG IKAFTPFNNENVLHG VYMTQ KSELRIARMHPDFDY
Sbjct: 954  VPTLLVYGAWGGMQTHQMTIDGSIKAFTPFNNENVLHGFVYMTQQKSELRIARMHPDFDY 1013

Query: 1326 EMPYPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFV 1147
            +MPYPVKKIEVG+T+H+VRYLMNSD+YAVVSS+PKPSNKIWVVMNDDKQEEIHEKDENFV
Sbjct: 1014 DMPYPVKKIEVGKTVHNVRYLMNSDIYAVVSSVPKPSNKIWVVMNDDKQEEIHEKDENFV 1073

Query: 1146 LPAPPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVN 967
            LPAPPKYTLNLFSSQDWAAVPNTE  FEDMEAVTA EDV LKSES   GL+T LA+ TVN
Sbjct: 1074 LPAPPKYTLNLFSSQDWAAVPNTEFEFEDMEAVTAMEDVPLKSESRYGGLDTYLALATVN 1133

Query: 966  NYGEEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMG 787
            NYGEEVLVRGRIILCEVIEVVPEP QPTSNRKIKVL+DKEQKGPVTGLCAINGLLL GMG
Sbjct: 1134 NYGEEVLVRGRIILCEVIEVVPEPGQPTSNRKIKVLYDKEQKGPVTGLCAINGLLLSGMG 1193

Query: 786  QKVFIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIAS 607
            QKVFIWQFKDNDLMGISFLDMHYYVYQLHS+RTIA+A DARESMSLIRFQE+NKAMSIAS
Sbjct: 1194 QKVFIWQFKDNDLMGISFLDMHYYVYQLHSIRTIALALDARESMSLIRFQEENKAMSIAS 1253

Query: 606  RDDRKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIG 427
            RDDRKCAQ PMAS+ +VDG H+GFLLSDE GNIT+F+Y+PEAPESNGGERLTV+AAINIG
Sbjct: 1254 RDDRKCAQAPMASEFLVDGMHIGFLLSDEHGNITLFSYSPEAPESNGGERLTVKAAINIG 1313

Query: 426  TNINAFVRLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQ 247
            TNINAF+R++GHTSLL  ++ +E+E IEQRM T+F SLDGSFG++RPLTEKSYRRLHFLQ
Sbjct: 1314 TNINAFLRVKGHTSLLDSSSPEERENIEQRMNTIFGSLDGSFGYIRPLTEKSYRRLHFLQ 1373

Query: 246  TFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRL 67
            TFIGSVTPQIAGLHIKG+RS+KPSQPIVNGRNARNLIDGDVVEQYLHLS+YDKTDLARRL
Sbjct: 1374 TFIGSVTPQIAGLHIKGARSSKPSQPIVNGRNARNLIDGDVVEQYLHLSVYDKTDLARRL 1433

Query: 66   GVGRYHIIDDLMQLRRMAFYY 4
            GVGRYHI+DDLMQLRRMA+YY
Sbjct: 1434 GVGRYHILDDLMQLRRMAYYY 1454


>gi|23503048|sp|Q10570|CPSA_HUMAN Cleavage and polyadenylation
            specificity factor, 160 kDa subunit (CPSF 160 kDa
            subunit)
 gi|16878041|gb|AAH17232.1| Cleavage and polyadenylation specific
            factor 1, 160kDa [Homo sapiens]
          Length = 1443

 Score =  767 bits (1980), Expect = 0.0
 Identities = 479/1521 (31%), Positives = 773/1521 (50%), Gaps = 67/1521 (4%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVN--PYVLKEPGEDNE 4192
            MY   ++    T + FS Y  F    N+   L+  G   + ++R+N     L +     E
Sbjct: 1    MYAVYKQAHPPTGLEFSMYCNFF--NNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTE 58

Query: 4191 EWQQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQT 4012
                + KLE   S        S+A  ++     +D++L++F DAKLS+V  +    +++T
Sbjct: 59   GKAHREKLELAASFSFFGNVMSMASVQLAGAK-RDALLLSFKDAKLSVVEYDPGTHDLKT 117

Query: 4011 ISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFH------------ 3868
            +SLH FE   LRDGF+ +   P VR DP  RCAA LVYG  + +LPF
Sbjct: 118  LSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLV 177

Query: 3867 ---ENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDT 3697
               + S  + SY+I ++ +D +L NI D+ FL GYYEPT+L L+EP QT PGR  VR DT
Sbjct: 178  GEGQRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDT 237

Query: 3696 MCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCG 3517
              I+ +S+NI  +   V+W   +LP DC+Q L +PKP+GG +VF  N+++YLNQ+VPP G
Sbjct: 238  CSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYG 297

Query: 3516 LVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGT 3337
            + LNS   G T FPL+  + +++TLDC+ + ++   ++ +  + G++++L L+T  G  +
Sbjct: 298  VALNSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITD-GMRS 356

Query: 3336 VKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKD 3157
            V++  F K   + +  S+    PG+LF+GSRLG+S LL+YT        +  R   D ++
Sbjct: 357  VRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEE 416

Query: 3156 PAAAEIELDE----------------DDMELYGGAXXXXXXXXXXXXXESLQFRELDRLR 3025
            P + +  +D                 D++E+YG                +  F   D +
Sbjct: 417  PPSKKKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLA------TYSFEVCDSIL 470

Query: 3024 NVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEIITSSL 2845
            N+GP  +  VG P ++S +  ++   +P  ++V  SGHGKNGAL V Q+S+RP+++T+
Sbjct: 471  NIGPCANAAVGEPAFLSEEFQNSP--EPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFE 528

Query: 2844 LEGAEQLWAV---GRKENES-----------------------HKYLIVSRVRSTXXXXX 2743
            L G   +W V    RKE E                        H +LI+SR  ST
Sbjct: 529  LPGCYDMWTVIAPVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQT 588

Query: 2742 XXXXXXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVIQ 2563
                       F T  PTV AG +      VQV+   I L+    Q+  + +D   P++Q
Sbjct: 589  GQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQ 648

Query: 2562 ASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIYA 2383
             ++ DPYV +++  G + ++ L  + Y             A       + +++ ++ +Y
Sbjct: 649  CAVADPYVVIMSAEGHVTMFLLKSDSYGGRHH------RLALHKPPLHHQSKVITLCLYR 702

Query: 2382 DASEIMKFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDETI 2203
            D S +      E  +       G  S  E   +  E          ++++ LYGD
Sbjct: 703  DLSGMF---TTESRLGGARDELGGRSGPEAEGLGSETSPTV----DDEEEMLYGDSGSLF 755

Query: 2202 MEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVSHE 2023
                            S +++  R         R  +     DP    +  +HW ++  E
Sbjct: 756  ----------------SPSKEEAR---------RSSQPPADRDPAPFRAEPTHWCLLVRE 790

Query: 2022 NGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPTDEAEQ 1843
            NG + I+ LP+  +V+ +  F     +LVD                       PT + E
Sbjct: 791  NGTMEIYQLPDWRLVFLVKNFPVGQRVLVD------------------SSFGQPTTQGEA 832

Query: 1842 LNTEMKQLCERVL--EAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPI-PGHLGISF 1672
               E  +  E  L  E  +V +G  Q+ P L+  VD+++++YE F   + +  G+L + F
Sbjct: 833  RREEATRQGELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRF 892

Query: 1671 RKLPHFICLRTSSHLNSDGKRAPFEMKINNGKR--FSLIHPFERVSSVNNGVMIVGAVPT 1498
            +K+PH I  R      S  K      +   G R   +    FE +   + GV I G  P
Sbjct: 893  KKVPHNINFREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYS-GVFICGPSPH 951

Query: 1497 LLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDYEMP 1318
             L+    G ++ H M +DGP+ +F PF+N N   G +Y  + + ELRI+ +     Y+ P
Sbjct: 952  WLLVTGRGALRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNR-QGELRISVLPAYLSYDAP 1010

Query: 1317 YPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFVLPA 1138
            +PV+KI +  T H+V Y + S VYAV +S   P  +I  +  ++K+ E  E+DE ++ P
Sbjct: 1011 WPVRKIPLRCTAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQ 1070

Query: 1137 PPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVNNYG 958
               +++ L S   W A+PN  I  ++ E VT  + V+L+SE T+SGL+  +A GT    G
Sbjct: 1071 QEAFSIQLISPVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQG 1130

Query: 957  EEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV 778
            EEV  RGRI++ +VIEVVPEP QP +  K KVL++KEQKGPVT LC  NG L+  +GQK+
Sbjct: 1131 EEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKI 1190

Query: 777  FIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDD 598
            F+W  + ++L G++F+D   Y++Q+ S++   +A D  +S+SL+R+QE++K +S+ SRD
Sbjct: 1191 FLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDA 1250

Query: 597  RKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNI 418
            +       +   +VD A +GFL+SD   N+ ++ Y PEA ES GG RL  RA  ++G ++
Sbjct: 1251 KPL--EVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHV 1308

Query: 417  NAFVR--LRGHTSLLQLNNEDEKEAI-EQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQ 247
            N F R   RG T  L      +K  + E +  T FA+LDG  G + P+ EK+YRRL  LQ
Sbjct: 1309 NTFWRTPCRGATEGL-----SKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1363

Query: 246  TFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRL 67
              + ++ P  AGL+ +  R     +  +     RN++DG+++ +YL+LS  ++++LA+++
Sbjct: 1364 NALTTMLPHHAGLNPRAFRMLHVDRRTLQNA-VRNVLDGELLNRYLYLSTMERSELAKKI 1422

Query: 66   GVGRYHIIDDLMQLRRMAFYY 4
            G     I+DDL++  R+  ++
Sbjct: 1423 GTTPDIILDDLLETDRVTAHF 1443


>gi|16751835|ref|NP_444423.1| cleavage and polyadenylation specific
            factor 1; cleavage and polyadenylation specificity factor
            1; CPSF160 [Mus musculus]
 gi|17374611|sp|Q9EPU4|CPSA_MOUSE Cleavage and polyadenylation
            specificity factor, 160 kDa subunit (CPSF 160 kDa
            subunit)
 gi|11762096|gb|AAG40326.1| cleavage and polyadenylation specificity
            factor 1 [Mus musculus]
 gi|38614159|gb|AAH56388.1| Cleavage and polyadenylation specific
            factor 1 [Mus musculus]
          Length = 1441

 Score =  766 bits (1979), Expect = 0.0
 Identities = 474/1522 (31%), Positives = 774/1522 (50%), Gaps = 68/1522 (4%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVN--PYVLKEPGEDNE 4192
            MY   ++    T + F+ Y  F    N+   L+  G   + ++R+N     L +     E
Sbjct: 1    MYAVYKQAHPPTGLEFTMYCNFF--NNSERNLVVAGTSQLYVYRLNRDAEALTKNDGSTE 58

Query: 4191 EWQQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQT 4012
                + KLE + S        S+A  ++     +D++L++F DAKLS+V  +    +++T
Sbjct: 59   GKAHREKLELVASFSFFGNVMSMASVQLAGAK-RDALLLSFKDAKLSVVEYDPGTHDLKT 117

Query: 4011 ISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFH------------ 3868
            +SLH FE   LRDGF+ +   P VR DP  RCAA L+YG  + +LPF
Sbjct: 118  LSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLM 177

Query: 3867 ---ENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDT 3697
               + S  + SY+I ++ +D +L NI D+ FL GYYEPT+L L+EP QT PGR  VR DT
Sbjct: 178  GEGQRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDT 237

Query: 3696 MCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCG 3517
              I+ +S+NI  +   V+W   +LP DC+Q L +PKP+GG ++F  N+++YLNQ+VPP G
Sbjct: 238  CSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYG 297

Query: 3516 LVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGT 3337
            + LNS   G T FPL+  + +++TLDC+ + ++   ++ +  + G++++L L+T  G  +
Sbjct: 298  VALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITD-GMRS 356

Query: 3336 VKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKD 3157
            V++  F K   + +  S+    PG+LF+GSRLG+S LL+YT        +  R   D ++
Sbjct: 357  VRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAADKEE 416

Query: 3156 PAAAE--------------IELDE-DDMELYGGAXXXXXXXXXXXXXESLQFRELDRLRN 3022
            P + +              +  DE D++E+YG                +  F   D + N
Sbjct: 417  PPSKKKRVEPAVGWTGGKTVPQDEVDEIEVYGSEAQSGTQLA------TYSFEVCDSMLN 470

Query: 3021 VGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEIITSSLL 2842
            +GP  +  VG P ++S +  ++   +P  ++V  SG+GKNGAL V Q+S+RP+++T+  L
Sbjct: 471  IGPCANAAVGEPAFLSEEFQNSP--EPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFEL 528

Query: 2841 EGAEQLWAV---GRKENES----------------------HKYLIVSRVRSTXXXXXXX 2737
             G   +W V    RKE E                       H +LI+SR  ST
Sbjct: 529  PGCYDMWTVIAPVRKEEEETPKAESTEQEPSAPKAEEDGRRHGFLILSREDSTMILQTGQ 588

Query: 2736 XXXXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVIQAS 2557
                     F T  PTV AG +      VQV+   I L+    Q+  + +D   P++Q +
Sbjct: 589  EIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCA 648

Query: 2556 IVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIYADA 2377
            + DPYV +++  G + ++ L  + Y             A       + +++ ++ +Y D
Sbjct: 649  VADPYVVIMSAEGHVTMFLLKSDSYGGRHH------RLALHKPPLHHQSKVIALCLYRDV 702

Query: 2376 SEIM----KFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDE 2209
            S +     +   A   +        E   +E +    ++ E   +L+G+        ++E
Sbjct: 703  SGMFTTESRLGGARDELGGRSGSEAEGLGSETSPTVDDEEE---MLYGDSSALFSPSKEE 759

Query: 2208 TIMEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVS 2029
                   P +   A  K                           DPT       HW ++
Sbjct: 760  ARRSSQPPADRDPAPFKA--------------------------DPT-------HWCLLV 786

Query: 2028 HENGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPTDEA 1849
             ENG + I+ LP+  +V+ +  F     +LVD                       PT +
Sbjct: 787  RENGTMEIYQLPDWRLVFLVKNFPVGQRVLVD------------------SSFGQPTTQG 828

Query: 1848 EQLNTEMKQLCERVL--EAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPI-PGHLGI 1678
            E    E  +  E  L  E  +V +G  Q+ P L+  VD+++++YE F   + +  G+L +
Sbjct: 829  EVRKEEATRQGELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKV 888

Query: 1677 SFRKLPHFICLRTSSHLNSDGKRAPFEMKINNGKR--FSLIHPFERVSSVNNGVMIVGAV 1504
             F+K+PH I  R      S  K      +  +G R   +    FE +   + GV I G
Sbjct: 889  RFKKVPHNINFREKKPKPSKKKAEGCSTEEGSGGRGRVARFRYFEDIYGYS-GVFICGPS 947

Query: 1503 PTLLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDYE 1324
            P  L+    G ++ H M +DGPI +F PF+N N   G +Y  + + ELRI+ +     Y+
Sbjct: 948  PHWLLVTGRGALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFNR-QGELRISVLPAYLSYD 1006

Query: 1323 MPYPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFVL 1144
             P+PV+KI +  T H+V Y + S VYAV +S   P  +I  +  ++K+ E  E+D+ ++
Sbjct: 1007 APWPVRKIPLRCTAHYVAYHVESKVYAVATSTNTPCTRIPRMTGEEKEFEAIERDDRYIH 1066

Query: 1143 PAPPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVNN 964
            P    +++ L S   W A+PN  I  E+ E VT  + V+L+SE T+SGL+  +A GT
Sbjct: 1067 PQQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLM 1126

Query: 963  YGEEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQ 784
             GEEV  RGRI++ +VIEVVPEP QP +  K KVL++KEQKGPVT LC  NG L+  +GQ
Sbjct: 1127 QGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1186

Query: 783  KVFIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASR 604
            K+F+W  + ++L G++F+D   Y++Q+ S++   +A D  +S+SL+R+QE++K +S+ SR
Sbjct: 1187 KIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSR 1246

Query: 603  DDRKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGT 424
            D +       +   +VD A +GFL+SD   N+ ++ Y PEA ES GG RL  RA  ++G
Sbjct: 1247 DAKPL--EVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGA 1304

Query: 423  NINAFVRLRGHTSLLQLNNEDEKEAI--EQRMTTVFASLDGSFGFVRPLTEKSYRRLHFL 250
            ++N F R    T          K+++  E +  T FA+LDG  G + P+ EK+YRRL  L
Sbjct: 1305 HVNTFWR----TPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLML 1360

Query: 249  QTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARR 70
            Q  + ++ P  AGL+ +  R     + I+     RN++DG+++ +YL+LS  ++++LA++
Sbjct: 1361 QNALTTMLPHHAGLNPRAFRMLHVDRRILQNA-VRNVLDGELLNRYLYLSTMERSELAKK 1419

Query: 69   LGVGRYHIIDDLMQLRRMAFYY 4
            +G     I+DDL++  R+  ++
Sbjct: 1420 IGTTPDIILDDLLETDRVTAHF 1441


>gi|27807297|ref|NP_777145.1| cleavage and polyadenylation specific
            factor 1, 160kDa [Bos taurus]
 gi|1706101|sp|Q10569|CPSA_BOVIN Cleavage and polyadenylation
            specificity factor, 160 kDa subunit (CPSF 160 kDa
            subunit)
 gi|1363024|pir||S57335 cleavage and polyadenylation specificity
            factor 160K chain - bovine
 gi|929007|emb|CAA58152.1| cleavage and polyadenylation specificity
            factor, 160 kDa subunit [Bos taurus]
          Length = 1444

 Score =  763 bits (1971), Expect = 0.0
 Identities = 470/1531 (30%), Positives = 767/1531 (49%), Gaps = 77/1531 (5%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVN-----PYVLKEPGE 4201
            MY   ++    T + FS Y  F    N+   L+  G   + ++R+N     P       +
Sbjct: 1    MYAVYKQAHPPTGLEFSMYCNFF--NNSERNLVVAGTSQLYVYRLNRDSEAPTKNDRSTD 58

Query: 4200 DNEEWQQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERN 4021
                 + + KLE + S        S+A  ++     +D++L++F DAKLS+V  +    +
Sbjct: 59   GKAHREHREKLELVASFSFFGNVMSMASVQLAGAK-RDALLLSFKDAKLSVVEYDPGTHD 117

Query: 4020 MQTISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFH--------- 3868
            ++T+SLH FE   LRDGF+ +   P VR DP  RCAA L+YG  + +LPF
Sbjct: 118  LKTLSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHE 177

Query: 3867 ------ENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVR 3706
                  + S  + SY+I ++ +D +L NI D+ FL GYYEPT+L L+EP QT PGR  VR
Sbjct: 178  GLVGEGQRSSFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVR 237

Query: 3705 YDTMCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVP 3526
             DT  I+ +S+NI  +   V+W   +LP DC+Q L +PKP+GG ++F  N+++YLNQ+VP
Sbjct: 238  QDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVP 297

Query: 3525 PCGLVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSG 3346
            P G+ LNS   G T FPL+  + +++TLDC+ + ++   ++ +  + G++++L L+T  G
Sbjct: 298  PYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITD-G 356

Query: 3345 GGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKID 3166
              +V++  F K   + +  S+    PG+LF+GSRLG+S LL+YT        +  R   D
Sbjct: 357  MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASTAREAAD 416

Query: 3165 NKDPAAAEIELDE---------------DDMELYGGAXXXXXXXXXXXXXESLQFRELDR 3031
             ++P + +  +D                D++E+YG                +  F   D
Sbjct: 417  KEEPPSKKKRVDATTGWSGSKSVPQDEVDEIEVYGSEAQSGTQLA------TYSFEVCDS 470

Query: 3030 LRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEIITS 2851
            + N+GP  +  +G P ++S +  ++   +P  ++V  SG+GKNGAL V Q+S+RP+++T+
Sbjct: 471  ILNIGPCANAAMGEPAFLSEEFQNSP--EPDLEIVVCSGYGKNGALSVLQKSIRPQVVTT 528

Query: 2850 SLLEGAEQLWAV---GRKENES----------------------HKYLIVSRVRSTXXXX 2746
              L G   +W V    RKE E                       H +LI+SR  ST
Sbjct: 529  FELPGCYDMWTVIAPVRKEQEETLKGEGTEPEPGAPEAEDDGRRHGFLILSREDSTMILQ 588

Query: 2745 XXXXXXXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVI 2566
                        F T  PTV AG +      VQV+   I L+    Q+  + +D   P++
Sbjct: 589  TGQEIMELDASGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGSPIV 648

Query: 2565 QASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIY 2386
            Q ++ DPYV +++  G + ++ L  + Y             A       + +++ ++ +Y
Sbjct: 649  QCAVADPYVVIMSAEGHVTMFLLKNDSYGGRHH------RLALHKPPLHHQSKVITLCVY 702

Query: 2385 ADASEIM----KFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGD 2218
             D S +     +       +        E   AE +    ++ E   +L+G+
Sbjct: 703  RDVSGMFTTESRLGGVRDELGGRGGPEAEGQGAETSPTVDDEEE---MLYGDSGSLFSPS 759

Query: 2217 EDETIMEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWL 2038
            ++E       P +   A  +   T                                 HW
Sbjct: 760  KEEARRSSQPPADRDPAPFRAEPT---------------------------------HWC 786

Query: 2037 IVSHENGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPT 1858
            ++  ENG + I+ LP+  +V+ +  F     +LVD                       PT
Sbjct: 787  LLVRENGAMEIYQLPDWRLVFLVKNFPVGQRVLVD------------------SSFGQPT 828

Query: 1857 DEAEQLNTEMKQLCERVL--EAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPI-PGH 1687
             + E    E  +  E  L  E  +V +G  Q  P L+  VD+++++YE F   + +  G+
Sbjct: 829  TQGEARKEEATRQGELPLVKEVLLVALGSRQRRPYLLVHVDQELLIYEAFPHDSQLGQGN 888

Query: 1686 LGISFRKLPHFICLRTSSHLNSDGKRAPFEMKINNGKRFSLIHPFERVSSVN-------- 1531
            L + F+K+PH I  R       + K  P + K   G       P  RV+
Sbjct: 889  LKVRFKKVPHNINFR-------EKKPKPSKKKAEGGSTEEGTGPRGRVARFRYFEDIYGY 941

Query: 1530 NGVMIVGAVPTLLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIA 1351
            +GV I G  P  L+    G ++ H M +DGPI +F PF+N N   G +Y  + + ELRI+
Sbjct: 942  SGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNINCPRGFLYFNR-QGELRIS 1000

Query: 1350 RMHPDFDYEMPYPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEI 1171
             +     Y+ P+PV+KI +  T H+V Y + S VYAV +S   P  ++  +  ++K+ E
Sbjct: 1001 VLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTSTPCTRVPRMTGEEKEFET 1060

Query: 1170 HEKDENFVLPAPPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLET 991
             E+DE +V P    + + L S   W A+PN  I  E+ E VT  + V+L+SE T+SGL+
Sbjct: 1061 IERDERYVHPQQEAFCIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKG 1120

Query: 990  LLAMGTVNNYGEEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAIN 811
             +A GT    GEEV  RGRI++ +VIEVVPEP QP +  K KVL++KEQKGPVT LC  N
Sbjct: 1121 YVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCN 1180

Query: 810  GLLLCGMGQKVFIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQED 631
            G L+  +GQK+F+W  + ++L G++F+D   Y++Q+ S++   +A D  +S+SL+R+QE+
Sbjct: 1181 GHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEE 1240

Query: 630  NKAMSIASRDDRKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLT 451
            +K +S+ SRD +       +   +VD A +GFL+SD   N+ ++ Y PEA ES GG RL
Sbjct: 1241 SKTLSLVSRDAKPL--EVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLL 1298

Query: 450  VRAAINIGTNINAFVRLRGHTSLLQLNNEDEKEAI--EQRMTTVFASLDGSFGFVRPLTE 277
             RA  ++G ++N F R    T          K+++  E +  T FA+LDG  G + P+ E
Sbjct: 1299 RRADFHVGAHVNTFWR----TPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQE 1354

Query: 276  KSYRRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSL 97
            K+YRRL  LQ  + ++ P  AGL+ +  R     + ++     RN++DG+++ +YL+LS
Sbjct: 1355 KTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRVLQNA-VRNVLDGELLNRYLYLST 1413

Query: 96   YDKTDLARRLGVGRYHIIDDLMQLRRMAFYY 4
             ++ +LA+++G     I+DDL++  R+  ++
Sbjct: 1414 MERGELAKKIGTTPDIILDDLLETDRVTAHF 1444


>gi|9558725|ref|NP_037423.1| cleavage and polyadenylation specific
            factor 1, 160kDa; cleavage and polyadenylation
            specificity factor; cleavage and polyadenylation specific
            factor 1, 160kD subunit [Homo sapiens]
 gi|1045574|gb|AAC50293.1| cleavage and polyadenylation specificity
            factor
          Length = 1442

 Score =  763 bits (1971), Expect = 0.0
 Identities = 475/1519 (31%), Positives = 769/1519 (50%), Gaps = 65/1519 (4%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVN--PYVLKEPGEDNE 4192
            MY   ++      + FS Y  F    N+   L+  G   + ++R+N     L +     E
Sbjct: 1    MYAVYKQAHPPPGLEFSMYCNFF--NNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTE 58

Query: 4191 EWQQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQT 4012
                + KLE   S        S+A  ++     +D++L++F DAKLS+V  +    +++T
Sbjct: 59   GKAHREKLELAASFSFFGNVMSMASVQLAGAK-RDALLLSFKDAKLSVVEYDPGTHDLKT 117

Query: 4011 ISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFH------------ 3868
            +SLH FE   LRDGF+ +   P VR DP  RCAA LVYG  + +LPF
Sbjct: 118  LSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLV 177

Query: 3867 ---ENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDT 3697
               + S  + SY+I ++ +D +L NI D+ FL GYYEPT+L L+EP QT PGR  VR DT
Sbjct: 178  GEGQRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDT 237

Query: 3696 MCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCG 3517
              I+ +S+NI  +   V+W   +LP DC+Q L +PKP+GG +VF  N+++YLNQ+VPP G
Sbjct: 238  CSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYG 297

Query: 3516 LVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGT 3337
            + LNS   G T FPL+  + +++TLDC+ + ++   ++ +  + G++++L L+T  G  +
Sbjct: 298  VALNSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITD-GMRS 356

Query: 3336 VKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKD 3157
            V++  F K   + +  S+    PG+LF+GSRLG+S LL+YT        +  R   D ++
Sbjct: 357  VRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEE 416

Query: 3156 PAAAEIELDE----------------DDMELYGGAXXXXXXXXXXXXXESLQFRELDRLR 3025
            P + +  +D                 D++E+YG                +  F   D +
Sbjct: 417  PPSKKKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLA------TYSFEVCDSIL 470

Query: 3024 NVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEIITSSL 2845
            N+GP  +  VG P ++S +  ++   +P  ++V  SGHGKNGAL V Q+S+RP+++T+
Sbjct: 471  NIGPCANAAVGEPAFLSEEFQNSP--EPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFE 528

Query: 2844 LEGAEQLWAV---GRKENES-----------------------HKYLIVSRVRSTXXXXX 2743
            L G   +W V    RKE E                        H +LI+SR  ST
Sbjct: 529  LPGCYDMWTVIAPVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQT 588

Query: 2742 XXXXXXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVIQ 2563
                       F T  PTV AG +      VQV+   I L+    Q+  + +D   P++Q
Sbjct: 589  GQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQ 648

Query: 2562 ASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIYA 2383
             ++ DPYV +++  G + ++ L  + Y             A       + +++ ++ +Y
Sbjct: 649  CAVADPYVVIMSAEGHVTMFLLKSDSYGGRHH------RLALHKPPLHHQSKVITLCLYR 702

Query: 2382 DASEIMKFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDETI 2203
            D S +      E  +       G  S  E   +  E          ++++ LYGD
Sbjct: 703  DLSGMF---TTESRLGGARDELGGRSGPEAEGLGSETSPTV----DDEEEMLYGDSGSLF 755

Query: 2202 MEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVSHE 2023
                            S +++  R         R  +     DP    +  +HW ++  E
Sbjct: 756  ----------------SPSKEEAR---------RSSQPPADRDPAPFRAEPTHWCLLVRE 790

Query: 2022 NGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPTDEAEQ 1843
            NG + I+ LP+  +V+ +  F     +LVD                       PT + E
Sbjct: 791  NGTMEIYQLPDWRLVFLVKNFPVGQRVLVD------------------SSFGQPTTQGEA 832

Query: 1842 LNTEMKQLCERVL--EAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPI-PGHLGISF 1672
               E  +  E  L  E  +V +G  Q+ P L+  VD+++++YE F   + +  G+L + F
Sbjct: 833  RREEATRQGELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRF 892

Query: 1671 RKLPHFICLRTSSHLNSDGKRAPFEMKINNGKR--FSLIHPFERVSSVNNGVMIVGAVPT 1498
            +K+PH I  R      S  K      +   G R   +    FE +   + GV I G  P
Sbjct: 893  KKVPHNINFREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYS-GVFICGPSPH 951

Query: 1497 LLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDYEMP 1318
             L+    G ++ H M +DGP+ +F PF+N N   G +Y  + + ELRI+ +     Y+ P
Sbjct: 952  WLLVTGRGALRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNR-QGELRISVLPAYLSYDAP 1010

Query: 1317 YPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFVLPA 1138
            +PV+KI +  T H+V Y + S VYAV +S   P  +I  +  ++K+ E  E+DE ++ P
Sbjct: 1011 WPVRKIPLRCTAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQ 1070

Query: 1137 PPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVNNYG 958
               +++ L S   W A+PN  I  ++ E VT  + V+L+SE T+SGL+  +A GT    G
Sbjct: 1071 QEAFSIQLISPVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQG 1130

Query: 957  EEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV 778
            EEV  RGRI++ +VIEVVPEP QP +  K KVL++KEQKGPVT LC  NG L+  +GQK+
Sbjct: 1131 EEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKI 1190

Query: 777  FIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDD 598
            F+W  + ++L G++F+D   Y++Q+ S++   +A D  +S+SL+R+QE++K +S+ SRD
Sbjct: 1191 FLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDA 1250

Query: 597  RKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNI 418
            +       +   +VD A +GFL+SD   N+ ++ Y PEA ES GG RL  RA  ++G ++
Sbjct: 1251 KPL--EVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHV 1308

Query: 417  NAFVRLRGHTSLLQLNNEDEKEAI-EQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTF 241
            N F R    T         +K  + E +  T FA+LDG  G + P+ EK+YRRL  LQ
Sbjct: 1309 NTFWR----TPCRATEGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNA 1364

Query: 240  IGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGV 61
            + ++ P  AGL+ +  R     +  +     RN++DG+++ +YL+LS  ++++LA+++G
Sbjct: 1365 LTTMLPHHAGLNPRAFRMLHVDRRTLQNA-VRNVLDGELLNRYLYLSTMERSELAKKIGT 1423

Query: 60   GRYHIIDDLMQLRRMAFYY 4
                I+DDL++  R+  ++
Sbjct: 1424 TPDIILDDLLETDRVTAHF 1442


>gi|34867012|ref|XP_345850.1| similar to cleavage and polyadenylation
            specificity factor 1 [Rattus norvegicus]
          Length = 1437

 Score =  762 bits (1967), Expect = 0.0
 Identities = 471/1520 (30%), Positives = 772/1520 (49%), Gaps = 66/1520 (4%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVN--PYVLKEPGEDNE 4192
            MY   ++    T + F+ Y  F    N+   L+  G   + ++R+N     L +     E
Sbjct: 1    MYAVYKQAHPPTGLEFAMYCNFF--NNSERNLVVAGTSQLYVYRLNRDAEALTKNDGSTE 58

Query: 4191 EWQQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQT 4012
                + KLE + S        S+A  ++     +D++L++F DAKLS+V  +    +++T
Sbjct: 59   GKAHREKLELVASFSFFGNVMSMASVQLAGAK-RDALLLSFKDAKLSVVEYDPGTHDLKT 117

Query: 4011 ISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFH------------ 3868
            +SLH FE   LRDGF+ +   P VR DP  RCAA L+YG  + +LPF
Sbjct: 118  LSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLM 177

Query: 3867 ---ENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDT 3697
               + S  + SY+I ++ +D +L NI D+ FL GYYEPT+L L+EP QT PGR  VR DT
Sbjct: 178  GEGQRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDT 237

Query: 3696 MCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCG 3517
              I+ +S+NI  +   V+W   +LP DC+Q L +PKP+GG ++F  N+++YLNQ+VPP G
Sbjct: 238  CSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYG 297

Query: 3516 LVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGT 3337
            + LNS   G T FPL+  + +++TLDC+ + ++   ++ +  + G++++L L+T  G  +
Sbjct: 298  VALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITD-GMRS 356

Query: 3336 VKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDCAVKRLKIDNKD 3157
            V++  F K   + +  S+    PG+LF+GSRLG+S LL+YT        +  R   D ++
Sbjct: 357  VRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAADKEE 416

Query: 3156 PAAAEIELDE-------------DDMELYGGAXXXXXXXXXXXXXESLQFRELDRLRNVG 3016
            P + +  +D              D++E+YG                +  F   D + N+G
Sbjct: 417  PPSKKKRVDPTVGWTGGKTQDEVDEIEVYGSEAQSGTQLA------TYSFEVCDSMLNIG 470

Query: 3015 PVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEIITSSLLEG 2836
            P  +  VG P ++S +  ++   +P  ++V  SG+GKNGAL V Q+S+RP+++T+  L G
Sbjct: 471  PCANAAVGEPAFLSEEFQNSP--EPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPG 528

Query: 2835 AEQLWAV---GRKENES----------------------HKYLIVSRVRSTXXXXXXXXX 2731
               +W V    RKE E                       H +LI+SR  ST
Sbjct: 529  CYDMWTVIAPVRKEEEETPKAESTEQEPSAPKAEEDGRRHGFLILSREDSTMILQTGQEI 588

Query: 2730 XXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVIQASIV 2551
                   F T  PTV AG +      VQV+   I L+    Q+  + +D   P++Q ++
Sbjct: 589  MELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVA 648

Query: 2550 DPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIYADASE 2371
            DPYV +++  G + ++ L  + Y             A       + +++ ++ +Y D S
Sbjct: 649  DPYVVIMSAEGHVTMFLLKSDSYGGRHH------RLALHKPPLHHQSKVIALCLYRDVSG 702

Query: 2370 IM----KFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDETI 2203
            +     +   A   +        E   +E +    ++ E   +L+G+        ++E
Sbjct: 703  MFTTESRLGGARDELGGRSGSEAEGLGSETSPTVDDEEE---MLYGDSSSLFSPSKEEAR 759

Query: 2202 MEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVSHE 2023
                 P +   A  +                           DPT       HW ++  E
Sbjct: 760  RSNQPPADRDPAPFRA--------------------------DPT-------HWCLLVRE 786

Query: 2022 NGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPTDEAEQ 1843
            NG + I+ LP+  +V+ +  F     +LVD                       PT + E
Sbjct: 787  NGTMEIYQLPDWRLVFLVKNFPVGQRVLVD------------------SSFGQPTTQGEV 828

Query: 1842 LNTEMKQLCERVL--EAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPI-PGHLGISF 1672
               E  +  E  L  E  +V +G  Q+ P L+  VD+++++YE F   + +  G+L + F
Sbjct: 829  RKEEATRQGELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRF 888

Query: 1671 RKLPHFICLRTSSHLNSDGKRAPFEMKINNGKR--FSLIHPFERVSSVNNGVMIVGAVPT 1498
            +K+PH I  R      S  K      +  +G R   +    FE +   + GV I G  P
Sbjct: 889  KKVPHNINFREKKPKPSKKKAEGCSTEEGSGVRGRVARFRYFEDIYGYS-GVFICGPSPH 947

Query: 1497 LLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDYEMP 1318
             L+    G ++ H M +DGPI +F PF+N N   G +Y  + + ELRI+ +     Y+ P
Sbjct: 948  WLLVTGRGALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFNR-QGELRISVLPAYLSYDAP 1006

Query: 1317 YPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFVLPA 1138
            +PV+KI +  T H+V Y + S VYAV +S   P  +I  +  ++K+ E  E+D+ ++ P
Sbjct: 1007 WPVRKIPLRCTAHYVAYHVESKVYAVATSTNTPCTRIPRMTGEEKEFEAIERDDRYIHPQ 1066

Query: 1137 PPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVNNYG 958
               +++ L S   W A+PN  I  E+ E VT  + V+L+SE T+SGL+  +A GT    G
Sbjct: 1067 QEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQG 1126

Query: 957  EEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV 778
            EEV  RGRI++ +VIEVVPEP QP +  K KVL++KEQKGPVT LC  NG L+  +GQK+
Sbjct: 1127 EEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKI 1186

Query: 777  FIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDD 598
            F+W  + ++L G++F+D   Y++Q+ S++   +A D  +S+SL+R+QE++K +S+ SRD
Sbjct: 1187 FLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDA 1246

Query: 597  RKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNI 418
            +       +   +VD A +GFL+SD   N+ ++ Y PE  ES GG RL  RA  ++G ++
Sbjct: 1247 KPL--EVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPE--ESFGGMRLLRRADFHVGAHV 1302

Query: 417  NAFVRLRGHTSLLQLNNEDEKEAI--EQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQT 244
            N F R    T          K+++  E +  T FA+LDG  G + P+ EK+YRRL  LQ
Sbjct: 1303 NTFWR----TPCRGAAEGPSKKSVMWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQN 1358

Query: 243  FIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLG 64
             + ++ P  AGL+ +  R     + I+     RN++DG+++ +YL+LS  ++++LA+++G
Sbjct: 1359 ALTTMLPHHAGLNPRAFRMLHVDRRILQNA-VRNVLDGELLNRYLYLSTMERSELAKKIG 1417

Query: 63   VGRYHIIDDLMQLRRMAFYY 4
                 I+DDL++  R+  ++
Sbjct: 1418 TTPDIILDDLLETDRVTAHF 1437


>gi|47217773|emb|CAG05995.1| unnamed protein product [Tetraodon
            nigroviridis]
          Length = 1446

 Score =  719 bits (1856), Expect = 0.0
 Identities = 476/1544 (30%), Positives = 785/1544 (50%), Gaps = 90/1544 (5%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVNPYV--LKEPGEDNE 4192
            MY   R+    TA+ FS Y  F+  +     L+  G   + ++R+   V    +  + ++
Sbjct: 1    MYAVYRQAHTPTAVEFSVYCNFISSKEKN--LVVAGTSQLFVYRIIHDVESTSKTDKSSD 58

Query: 4191 EWQQKTKLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQT 4012
               +K KLE + +  L     S+   ++    ++D++L++F DAKLS+V  +    +++T
Sbjct: 59   SKTRKEKLEQVAAFSLFGNVMSMESVQLVGA-NRDALLLSFKDAKLSVVEYDPGTHDLKT 117

Query: 4011 ISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFHENSKRIHSYVIP 3832
            +SLH FE   LRD   +  Q   V   P +            + LP         +Y+I
Sbjct: 118  LSLHYFEEPELRDTLTDE-QELGVGEGPKS------------SFLP---------TYIID 155

Query: 3831 LKQIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQF 3652
            ++++D +L NI DM FL GYYEPT+L L+EP QT PGR  VR     I+ +S+NI+ +
Sbjct: 156  VRELDEKLLNIIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQAQCSIVAISLNIMQKVH 215

Query: 3651 AVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPL 3472
             V+W  +NLP DC+Q++ +PKP+GG +VF  N+++YLNQ+VPP G+ LNS  +G T FPL
Sbjct: 216  PVIWSLSNLPFDCTQVMAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTNGTTAFPL 275

Query: 3471 KDLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIA 3292
            +    +K+TLDCS + ++   ++ +  + G++++L L+T  G  +V++  F K   + +
Sbjct: 276  RLQDEVKITLDCSQADFIAYDKMVISLKGGEIYVLTLITD-GMRSVRAFHFDKAAASVLT 334

Query: 3291 YSLTVCAPGHLFVGSRLGDSQLLEYTL------LKTTRDCAVKRLKID----------NK 3160
              +    PG+LF+GSRLG+S LL+YT       L+  +D   K    D          N
Sbjct: 335  TCMVTMEPGYLFLGSRLGNSLLLKYTEKLQEMPLEEGKDKQEKEKDNDMDKQVYVHTLNS 394

Query: 3159 DPAAAEIE--LDE-DDMELYGGAXXXXXXXXXXXXXESLQFRELDRLRNVGPVKSMCVGR 2989
              A ++ +  +DE D++E+YG                +  F   D + N+GP  +  +G
Sbjct: 395  FSAHSQHDFFVDEVDEIEVYGSEAQSGTQLA------TYSFEVCDSILNIGPCANASMGE 448

Query: 2988 PNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEIITSSLLEGAEQLWAVGR 2809
            P ++S +       +P  ++V  SGHGKNGAL V QRS+RP+++T+  L G   +W V
Sbjct: 449  PAFLSEEFQG--NPEPDLEVVVCSGHGKNGALSVLQRSIRPQVVTTFELPGCHDMWTVIS 506

Query: 2808 KE------------------------NESHKYLIVSRVRSTXXXXXXXXXXXXXXXLFVT 2701
             E                         + H +LI+SR  ST                F T
Sbjct: 507  NEVKEDKKVPQSPGSFTATHYSLEEDTKKHGFLILSREDSTMILQTGQEIMELDTSGFAT 566

Query: 2700 GEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVIQASIVDPYVALLTQN 2521
              PTV AG +      +QV+   I L+   +Q+  + +D   P++  S+ DPYV ++T
Sbjct: 567  QGPTVFAGNIGDNKYIIQVSPMGIRLLEGVKQLHFIPVDLGSPIVHCSVADPYVVIMTAE 626

Query: 2520 GRLLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIYADASEIMKFAAAEKS 2341
            G + ++ L ++ Y+            A         +++ ++  Y D S +  F    K
Sbjct: 627  GVVTMFVLKVDSYMG------KTHRLALQKPQISTQSRVIALCAYRDVSGM--FTTENK- 677

Query: 2340 MXXXXXXXGEVSTAENAMMKKEQHEEAIL------LHGEDDDFLYGDEDETIMEQNFPVE 2179
                       + AE+  ++ +   E ++      +  ++++ LYGD
Sbjct: 678  --------VSCAIAEDFNIRSQSETETVIHDLSSNIVDDEEEMLYGDSS----------- 718

Query: 2178 NGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSSISHWLIVSHENGRLSIHS 1999
            +     K+   R     G      S GG            +  SHW +V+ E+G + I+
Sbjct: 719  SNAGPSKEEMIRSFVAPGPSV---SEGGPSK---------AEPSHWCLVTRESGVMEIYQ 766

Query: 1998 LPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPTDEAEQLNTEMKQL 1819
            LP+  +V+ +  F     +LVD                     S    + E    EM +
Sbjct: 767  LPDWRLVFLVKNFPVGQRVLVD----------------SSSGQSATQGDKEGKKEEMTRQ 810

Query: 1818 CE--RVLEAQIVGMGINQAHPILMAIVDEQVVLYEMFSSSNPIP-GHLGISFRKLPHFIC 1648
             E   V E  +V +G N + P L+  V++++++YE F      P  +L + F+K+PH I
Sbjct: 811  GEIPLVKEVTLVSLGYNHSRPYLLVHVEQELLVYEAFPYDQQQPQNNLKVRFKKVPHNIN 870

Query: 1647 LRTS-SHLNSDGKR--APFEMKINNGKRFSLIHPFERVSSVNNGVMIVGAVPTLLVYGAW 1477
             R   S L  D K   A  E  +    R S    FE +S  + GV I G  P  ++  +
Sbjct: 871  FREKKSKLRKDKKAEGAAAEDGVAARGRISRFRYFEDISGYS-GVFICGPSPHWMLVTSR 929

Query: 1476 GGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHKSELRIARMHPDFDYEMPYPVKKIE 1297
            G ++ H MT+DGPI++F+PF+N N   G +Y  + + ELRI+ +     Y+ P+PV+KI
Sbjct: 930  GALRLHPMTIDGPIESFSPFHNINCPKGFLYFNK-QGELRISVLPTYLSYDAPWPVRKIP 988

Query: 1296 VGRTIHHVRYLMNSD-------VYAVVSSIPKPSNKIWVVMNDDKQEEIHEKDENFVLPA 1138
            +  T+H+V Y + S        VYAV +S+ +   +I  +  ++K+ E  E+DE ++ P
Sbjct: 989  LRCTVHYVSYHVESKASLSHCCVYAVCTSVKELCTRIPRMTGEEKEYETIERDERYINPQ 1048

Query: 1137 PPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSESTISGLETLLAMGTVNNYG 958
              K+++ L S   W A+PNT I  E+ E VT  + VAL+S+ T+SGL+  +A GT    G
Sbjct: 1049 QDKFSIQLISPVSWEAIPNTRIDLEEWEYVTCMKTVALRSQETVSGLKGYIAAGTCLMQG 1108

Query: 957  EEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV 778
            EEV  RGRI++ +VIEVVPEP QP +  K KVL++KEQKGPVT LC  NG L+  +GQK+
Sbjct: 1109 EEVTCRGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGYLVSAIGQKI 1168

Query: 777  FIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLIRFQEDNKAMSIASRDD 598
            F+W  KDNDL G++F+D   Y++Q+ S++   +A D  +S+SL+R+QE++K +S+ SRD
Sbjct: 1169 FLWVLKDNDLTGMAFIDTQLYIHQMMSIKNFILAADLMKSVSLLRYQEESKTLSLVSRDA 1228

Query: 597  RKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNI 418
            +       + + +VD + +GFL+SD   N+ ++ Y PEA ES GG RL  RA  N G NI
Sbjct: 1229 KPL--EVYSIEFMVDNSQLGFLVSDRDKNLYVYMYLPEAKESFGGMRLLRRADFNAGANI 1286

Query: 417  NAFVRLRGHTSLLQLNNEDEKEAI--EQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQT 244
            N F R+    +L        ++A+  + +  T FA+LDG  G + P+ EK+YRRL  LQ
Sbjct: 1287 NTFWRMPCRGAL----EAGSRKAMTWDNKHITWFATLDGGVGLLLPMQEKTYRRLLMLQN 1342

Query: 243  FIGSVTPQIAGLHIKGSR---SAKPSQPIVNG---------------------RNARNLI 136
             + ++    AGL+ K  R   + + S  +++G                        +N++
Sbjct: 1343 ALTTMLSHHAGLNPKAFRCVGADRTSAAMLSGMLPDFATSVSRMLHCDRRSLQNPVKNIL 1402

Query: 135  DGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRMAFYY 4
            DG+++ +YL+LS+ ++++LA+++G  +  I+DDL+ + R+  ++
Sbjct: 1403 DGELLNKYLYLSMMERSELAKKIGTTQDIILDDLLDIDRVTAHF 1446


>gi|45552619|ref|NP_995833.1| CG10110-PA [Drosophila melanogaster]
 gi|18203551|sp|Q9V726|CPSA_DROME Cleavage and polyadenylation
            specificity factor, 160 kDa subunit (CPSF 160 kDa
            subunit) (CPSF-160) (dCPSF)
 gi|7303176|gb|AAF58240.1| CG10110-PA [Drosophila melanogaster]
          Length = 1455

 Score =  696 bits (1795), Expect = 0.0
 Identities = 457/1533 (29%), Positives = 760/1533 (48%), Gaps = 82/1533 (5%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVNPYV----LKEPGED 4198
            M+   ++T  +TA+ FS   +F    N    L+  GA  ++++R+ P V     ++
Sbjct: 1    MFSMCKQTHSATAVEFSIACRFF--NNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPS 58

Query: 4197 NEEWQQKTKLECMFSCRLLN-----KCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINE 4033
                  K +LEC+ +  L       +C S+A A       +D++L++F DAKLS++  +
Sbjct: 59   EMRLAPKMRLECLATYTLYGNVMSLQCVSLAGAM------RDALLISFKDAKLSVLQHDP 112

Query: 4032 KERNMQTISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFHENSKR 3853
                ++T+SLH FE + +R G+   +  P VR DP +RCA  LVYGK + +LPF +++
Sbjct: 113  DTFALKTLSLHYFEEDDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSL 172

Query: 3852 ------------------------IHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLY 3745
                                    + SY+I L+ +D ++DN+ D+ FL GYYEPT+L LY
Sbjct: 173  DEIELADVKPIKKAPTAMVSRTPIMASYLIALRDLDEKIDNVLDIQFLHGYYEPTLLILY 232

Query: 3744 EPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVF 3565
            EP++T PGR  VR DT  ++ +S+NI  R   ++W   +LP DC Q+ PI KP+GG LV
Sbjct: 233  EPVRTCPGRIKVRSDTCVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGGCLVM 292

Query: 3564 GSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAVGSRD 3385
              N V+YLNQ+VPP G+ LNS  D  T FPLK    ++++LDC+   +++  ++ +  R
Sbjct: 293  TVNAVIYLNQSVPPYGVSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVDKLVISLRT 352

Query: 3384 GDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEY---- 3217
            GDL++L L   S   TV++  F K   + +   + V    ++F+GSRLG+S LL +
Sbjct: 353  GDLYVLTLCVDS-MRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEED 411

Query: 3216 -----TLLKTTRDCAVKRLKIDNKDPAAAEI----------------ELDEDDMELYGGA 3100
                 TL +  +    ++  + ++D    EI                 ++++++E+YG
Sbjct: 412  QSTVITLDEVEQQSEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGSG 471

Query: 3099 XXXXXXXXXXXXXESLQFRELDRLRNVGPVKSMCVGRPNYMSNDLVDAK-----RRDPVF 2935
                             F   D L NV P+  MC G       D V  +      +D
Sbjct: 472  -----AKASVLQLRKFIFEVCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLKI 526

Query: 2934 DLVTASGHGKNGALCVHQRSLRPEIITSSLLEGAEQLWAV------GRKENESHKYLIVS 2773
            +LV A+GH KNGAL V    + P+IITS  L+G   +W V          N+ H ++++S
Sbjct: 527  ELVAATGHSKNGALSVFVNCINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHDFMLLS 586

Query: 2772 RVRSTXXXXXXXXXXXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEV 2593
            +  ST                F   +PT+  G L Q    VQVT+  + L+   + +Q V
Sbjct: 587  QRNSTLVLQTGQEINEIENTGFTVNQPTIFVGNLGQQRFIVQVTTRHVRLLQGTRLIQNV 646

Query: 2592 HIDSNFPVIQASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNL 2413
             ID   PV+Q SI DPYV L   NG+++         + LRE   +       H T  +
Sbjct: 647  PIDVGSPVVQVSIADPYVCLRVLNGQVIT--------LALRETRGTPRLAINKH-TISSS 697

Query: 2412 TQLTSISIYADASEIMKFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDD 2233
              + +IS Y D S +  F      +            +    MK E + +      +++D
Sbjct: 698  PAVVAISAYKDLSGL--FTVKGDDINLTGSSNSAFGHSFGGYMKAEPNMKV----EDEED 751

Query: 2232 FLYGDEDETIMEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSS 2053
             LYGD         F + +     KQS  +         +Q+
Sbjct: 752  LLYGDAGSA-----FKMNSMADLAKQSKQKNSDWWRRLLVQAKP---------------- 790

Query: 2052 ISHWLIVSHENGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXX 1873
             S+WL+V+ ++G L I+S+P+M++VY +    N   +L D
Sbjct: 791  -SYWLVVARQSGTLEIYSMPDMKLVYLVNDVGNGSMVLTD------------------AM 831

Query: 1872 ASVPTDEAEQLNTE--MKQLC-------ERVLEAQIVGMGINQAHPILMAIVDEQVVLYE 1720
              VP     Q N++  + Q C          LE  ++G+G+N   P+L+     ++++Y+
Sbjct: 832  EFVPISLTTQENSKAGIVQACMPQHANSPLPLELSVIGLGLNGERPLLLVRTRVELLIYQ 891

Query: 1719 MFSSSNPIPGHLGISFRKLPHFICL---RTSSHLNSDGKRAPFEMKINNGKRFSLIHPFE 1549
            +F       GHL I FRK+     L    T   L+ + ++   E      K    + PF
Sbjct: 892  VFRYPK---GHLKIRFRKMDQLNLLDQQPTHIDLDENDEQEEIESYQMQPKYVQKLRPFA 948

Query: 1548 RVSSVNNGVMIVGAVPTLLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHK 1369
             V  + +GVM+ G  P  +     G ++ H++  +G +++F  FNN N+ +G +Y
Sbjct: 949  NVGGL-SGVMVCGVNPCFVFLTFRGELRIHRLLGNGDVRSFAAFNNVNIPNGFLYF-DTT 1006

Query: 1368 SELRIARMHPDFDYEMPYPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMND 1189
             EL+I+ +     Y+  +PV+K+ +  T   + Y   + VY +++   +P  K +    +
Sbjct: 1007 YELKISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYRFNGE 1066

Query: 1188 DKQEEIHEKDENFVLPAPPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSEST 1009
            DK+     + E F+ P   ++ + L S + W  VP+  I+FE  E VTA + V L  E T
Sbjct: 1067 DKELSEESRGERFIYPIGSQFEMVLISPETWEIVPDASITFEPWEHVTAFKIVKLSYEGT 1126

Query: 1008 ISGLETLLAMGTVNNYGEEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVT 829
             SGL+  L +GT  NY E++  RG I + ++IEVVPEP +P +  KIK +F KEQKGPV+
Sbjct: 1127 RSGLKEYLCIGTNFNYSEDITSRGNIHIYDIIEVVPEPGKPMTKFKIKEIFKKEQKGPVS 1186

Query: 828  GLCAINGLLLCGMGQKVFIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSL 649
             +  + G L+ G+GQK++IWQ +D DL+G++F+D + YV+Q+ +++++    D  +S+SL
Sbjct: 1187 AISDVLGFLVTGLGQKIYIWQLRDGDLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISL 1246

Query: 648  IRFQEDNKAMSIASRDDRKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESN 469
            +RFQE+ + +S+ASRD           + +VD +++GFL++D   NI ++ Y PEA ES
Sbjct: 1247 LRFQEEYRTLSLASRDFNPL--EVYGIEFMVDNSNLGFLVTDAERNIIVYMYQPEARESL 1304

Query: 468  GGERLTVRAAINIGTNINAFVRLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVR 289
            GG++L  +A  ++G  +N   R++ H   L   ++ +    E +   V+ +LDG+ G+
Sbjct: 1305 GGQKLLRKADYHLGQVVNTMFRVQCHQKGL---HQRQPFLYENKHFVVYGTLDGALGYCL 1361

Query: 288  PLTEKSYRRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRN-ARNLIDGDVVEQY 112
            PL EK YRR   LQ  + S    + GL+ K  R+ K S+    G N +R +IDGD++  Y
Sbjct: 1362 PLPEKVYRRFLMLQNVLLSYQEHLCGLNPKEYRTLKSSKK--QGINPSRCIIDGDLIWSY 1419

Query: 111  LHLSLYDKTDLARRLGVGRYHIIDDLMQLRRMA 13
              ++  ++ ++A+++G     I+ DL+++ R+A
Sbjct: 1420 RLMANSERNEVAKKIGTRTEEILGDLLEIERLA 1452


>gi|31200727|ref|XP_309311.1| ENSANGP00000018461 [Anopheles gambiae]
 gi|21293116|gb|EAA05261.1| ENSANGP00000018461 [Anopheles gambiae str.
            PEST]
          Length = 1452

 Score =  678 bits (1750), Expect = 0.0
 Identities = 471/1537 (30%), Positives = 769/1537 (49%), Gaps = 87/1537 (5%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVNPYVLKEPGEDNEEW 4186
            M+   ++  ++TA+ FS    F    +    L+T GA  ++++RV P    +P   ++
Sbjct: 1    MFSLCKQPHEATAVEFSLTCHFF--NHNEKSLVTGGANVLKVYRVIPDA--DPATRDKYT 56

Query: 4185 QQKT---KLECMFSCRLLNKCHSI-AVARVPQLPDQDSILMTFDDAKLSIVSINEKERNM 4018
              +    KLEC+ S RL     S+ +V+    L  +D++L++F DAKLS+V  +    ++
Sbjct: 57   AARPPNMKLECVASYRLNGNIKSMQSVSLAGSL--RDALLISFPDAKLSVVQFDPDNFDL 114

Query: 4017 QTISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFHENSKR----- 3853
            +T+SLH FE+E +R G+  H+  P+VR DP NRCA  LVYG+ + +LPF ++S
Sbjct: 115  KTLSLHYFEDEDIRGGWTGHYHIPMVRVDPDNRCAVMLVYGRKLVVLPFRKDSSLDEIEL 174

Query: 3852 -------------------IHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLYEPIQT 3730
                               + SY+I LK +D ++DN+ D+ FL GYYEPT+L LYEP++T
Sbjct: 175  QDVKPIKKAPMQLVAKTPILASYIIELKDLDEKIDNVIDIQFLHGYYEPTLLILYEPVRT 234

Query: 3729 TPGRACVRYDTMCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVFGSNTV 3550
             PGR  VR DT  ++ +S+NI  R   V+W   +LP DC Q +PI KP+GG LV   N++
Sbjct: 235  FPGRIAVRSDTCTMVALSLNIQQRVHPVIWTVNSLPFDCIQAIPINKPIGGCLVMCVNSL 294

Query: 3549 VYLNQAVPPCGLVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAVGSRDGDLFL 3370
            +YLNQ+VPP G+ LNS  D  T FPLK    ++++LD +   ++E  ++ +  + G+L++
Sbjct: 295  IYLNQSVPPYGVSLNSSADHSTSFPLKPQDGVRISLDAAQVCFIEPEKLVLSLKGGELYV 354

Query: 3369 LRLMTSSGGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRDC 3190
            L L   S   +V++  F+K   + +   + VC   +LF+GSRLG+S LL +      +D
Sbjct: 355  LTLCADS-MRSVRNFHFNKAAASVLTSCICVCEDEYLFLGSRLGNSLLLRF----KEKD- 408

Query: 3189 AVKRLKIDNKDPAAAEIE-----LDEDDMELYGGAXXXXXXXXXXXXXESLQFRELDRLR 3025
              + L I   D  A E E     L+E+++E+YG                S  F   D +
Sbjct: 409  --ESLVITIDDSGAVEKEPKRPRLEEEELEVYGSG------YKTSVQLTSYIFEVCDNVL 460

Query: 3024 NVGPVKSMCVG----RPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEII 2857
            N+GP+  M VG      +  +   V   +     ++VT+SGHGKNGALCV Q S++P++I
Sbjct: 461  NIGPIAHMAVGERVAEEDAENQPDVQIVQNKLDIEVVTSSGHGKNGALCVLQSSIKPQVI 520

Query: 2856 TSSLLEGAEQLW-----AVGRKENE---SHKYLIVSRVRSTXXXXXXXXXXXXXXXLFVT 2701
            TS  L G   +W     AV R+  +   +H ++I+S+   T                F T
Sbjct: 521  TSFGLSGCVDVWTVFDEAVARRAEDGPSTHAFMILSQEGGTMVLQTGEEINEIENTGFAT 580

Query: 2700 GEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSNFPVIQASIVDPYVALLTQN 2521
              PT+  G +      VQVT+  I L+   + +Q + ID   P+   +IVDPYV + +
Sbjct: 581  TVPTIHVGNIGTNRFIVQVTTKSIRLLQGTRLLQNIPIDLGCPLASVAIVDPYVCVRSSE 640

Query: 2520 GR---LLLYELVMEPYVQLREVDISATSFATWHATAQNLTQLTSISIYADASEIMKFAAA 2350
            GR   L L E    P + + +  IS T              + +IS Y D S +
Sbjct: 641  GRVITLALREGKGTPRLAVNKNTISPT------------PAVVAISAYRDVSGLFT-KKI 687

Query: 2349 EKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDDFLYGDEDETIMEQNFPVENGE 2170
            E              ++    MK E H +      +++D LYG+   +
Sbjct: 688  EDVYDLSRGGAASAYSSGFGSMKPEPHMKI----EDEEDLLYGESGRSF----------- 732

Query: 2169 ATIKQSNTRKRKRLGHDAIQSSRGG------EQSDAIDPTRTFSSISHWLIVSHENGRLS 2008
                     K   +   AI    GG      +    + PT       +WL  + +NG L
Sbjct: 733  ---------KMTSMADMAIAGKSGGSADFWMKYMQQVKPT-------YWLFAARDNGTLE 776

Query: 2007 IHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXXASVPTDEAEQLNTEM 1828
            I+S+P++++VY I    N  ++L D                     S   ++A
Sbjct: 777  IYSMPDLKLVYLITNVGNGNKVLSD----------SMEFVPLPMGKSASQEDASSAFGAS 826

Query: 1827 KQLCERVLEAQI--VGMGINQAHPILMAIVDEQVVLYEMFSSSNPIPGHLGISFRKLPHF 1654
              +   +L  +I  V +G   + P+L   ++  +++Y +F  S    GHL + F++L
Sbjct: 827  FGVSASLLPKEILMVALGSYGSRPLLFIRLEHDLLIYRVFRYSK---GHLKLRFKRLSTS 883

Query: 1653 I---CLRT--SSHLNSDGKRAPFEMKINNG---------------------KRFSLIHPF 1552
            +     RT  +   N D K A    +                         +  S+I  F
Sbjct: 884  VTCPVFRTVPARFANLDSKTAAGGTEPEPSGAGATEAANEQQQARATKVLYENISMIRYF 943

Query: 1551 ERVSSVNNGVMIVGAVPTLLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQH 1372
              VS    GV + G  P  L   A G +++H++     +KAF PFNN N  +G +Y  +
Sbjct: 944  ANVSGY-AGVAVCGEKPYFLFLTAHGELRSHRLYARTVMKAFAPFNNVNCPNGFLYFDE- 1001

Query: 1371 KSELRIARMHPDFDYEMPYPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMN 1192
            + EL+I+       Y+  +PV+KI +  +   + Y   + VY VV    +  NK +
Sbjct: 1002 QYELKISIFPTYLSYDSVWPVRKIPLRSSPKQIVYHRENKVYCVVMDAEEICNKYYRFNG 1061

Query: 1191 DDKQEEIHEKDENFVLPAPPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSES 1012
            +DK+     K E F+ P   ++++ L +   W  VP T I+ E+ E V A ++V+L  E
Sbjct: 1062 EDKELTEENKGERFLYPMGHRFSVVLVTPAAWEVVPETSINLEEWEHVIALKNVSLTYEG 1121

Query: 1011 TISGLETLLAMGTVNNYGEEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPV 832
              SGL+  +A+GT  NY E++  RGR++L ++IEVVPEP +P +  K K +  K+QKGPV
Sbjct: 1122 ARSGLKEYIAVGTNFNYSEDITSRGRLLLYDIIEVVPEPGKPLTKHKFKEVIVKDQKGPV 1181

Query: 831  TGLCAINGLLLCGMGQKVFIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMS 652
            + +  + G L+  +GQKV++WQ KD+DL+G++F+D + +V+Q+ S++++ +  D  +S+S
Sbjct: 1182 SAISHVCGFLVGAVGQKVYLWQMKDDDLVGVAFIDTNIFVHQMVSIKSLILVADVYKSVS 1241

Query: 651  LIRFQEDNKAMSIASRDDRKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPES 472
            L+RFQE+ + +S+ SRD           + VVD A++GFL+SD+  N+  + Y PE+ ES
Sbjct: 1242 LLRFQEEYRTLSVVSRDYHPL--NVFQVEYVVDNANLGFLVSDDQCNLITYMYQPESRES 1299

Query: 471  NGGERLTVRAAINIGTNINAFVRLR---GHTSLLQLN-NEDEKEAIEQRMTTVFASLDGS 304
             GG+RL  ++  ++G  +N   R++     T +++   N D K       TT FA+LDG
Sbjct: 1300 FGGQRLLRKSDYHLGQQVNCMFRVQCDFHETDVMKRTLNYDNKH------TTFFATLDGG 1353

Query: 303  FGFVRPLTEKSYRRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPI-VNGRNARNLIDGD 127
             GFV PL EK+YRRL  LQ  + + +P   GL+ K  R+ K ++ + +N   +R ++DGD
Sbjct: 1354 IGFVLPLPEKTYRRLFMLQNVLLTHSPHTCGLNPKAYRTIKQTRKLPIN--PSRCVVDGD 1411

Query: 126  VVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRM 16
            +V  +L L   +K ++A+++G     I  DLM++  +
Sbjct: 1412 LVWSFLELPANEKHEVAKKIGTRIEEICADLMEIEHV 1448


>gi|24653655|ref|NP_725397.1| CG10110-PB [Drosophila melanogaster]
 gi|15292103|gb|AAK93320.1| LD38533p [Drosophila melanogaster]
 gi|21627189|gb|AAM68553.1| CG10110-PB [Drosophila melanogaster]
          Length = 1420

 Score =  649 bits (1673), Expect = 0.0
 Identities = 443/1533 (28%), Positives = 740/1533 (47%), Gaps = 82/1533 (5%)
 Frame = -1

Query: 4365 MYGYLRETDDSTAINFSAYGKFLPGENTGFQLLTIGAKFIRIFRVNPYV----LKEPGED 4198
            M+   ++T  +TA+ FS   +F    N    L+  GA  ++++R+ P V     ++
Sbjct: 1    MFSMCKQTHSATAVEFSIACRFF--NNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPS 58

Query: 4197 NEEWQQKTKLECMFSCRLLN-----KCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINE 4033
                  K +LEC+ +  L       +C S+A A       +D++L++F DAKLS++  +
Sbjct: 59   EMRLAPKMRLECLATYTLYGNVMSLQCVSLAGAM------RDALLISFKDAKLSVLQHDP 112

Query: 4032 KERNMQTISLHAFENEYLRDGFINHFQPPLVRSDPSNRCAACLVYGKHIAILPFHENSKR 3853
                ++T+SLH FE + +R G+   +  P VR DP +RCA  LVYGK + +LPF +++
Sbjct: 113  DTFALKTLSLHYFEEDDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSL 172

Query: 3852 ------------------------IHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLY 3745
                                    + SY+I L+ +D ++DN+ D+ FL GYYEPT+L LY
Sbjct: 173  DEIELADVKPIKKAPTAMVSRTPIMASYLIALRDLDEKIDNVLDIQFLHGYYEPTLLILY 232

Query: 3744 EPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAVVWQTANLPMDCSQLLPIPKPLGGALVF 3565
            EP++T PGR                                    ++ PI KP+GG LV
Sbjct: 233  EPVRTCPGRI-----------------------------------KVYPIQKPIGGCLVM 257

Query: 3564 GSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAVGSRD 3385
              N V+YLNQ+VPP G+ LNS  D  T FPLK    ++++LDC+   +++  ++ +  R
Sbjct: 258  TVNAVIYLNQSVPPYGVSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVDKLVISLRT 317

Query: 3384 GDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEY---- 3217
            GDL++L L   S   TV++  F K   + +   + V    ++F+GSRLG+S LL +
Sbjct: 318  GDLYVLTLCVDS-MRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEED 376

Query: 3216 -----TLLKTTRDCAVKRLKIDNKDPAAAEI----------------ELDEDDMELYGGA 3100
                 TL +  +    ++  + ++D    EI                 ++++++E+YG
Sbjct: 377  QSTVITLDEVEQQSEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGSG 436

Query: 3099 XXXXXXXXXXXXXESLQFRELDRLRNVGPVKSMCVGRPNYMSNDLVDAK-----RRDPVF 2935
                             F   D L NV P+  MC G       D V  +      +D
Sbjct: 437  -----AKASVLQLRKFIFEVCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLKI 491

Query: 2934 DLVTASGHGKNGALCVHQRSLRPEIITSSLLEGAEQLWAV------GRKENESHKYLIVS 2773
            +LV A+GH KNGAL V    + P+IITS  L+G   +W V          N+ H ++++S
Sbjct: 492  ELVAATGHSKNGALSVFVNCINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHDFMLLS 551

Query: 2772 RVRSTXXXXXXXXXXXXXXXLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEV 2593
            +  ST                F   +PT+  G L Q    VQVT+  + L+   + +Q V
Sbjct: 552  QRNSTLVLQTGQEINEIENTGFTVNQPTIFVGNLGQQRFIVQVTTRHVRLLQGTRLIQNV 611

Query: 2592 HIDSNFPVIQASIVDPYVALLTQNGRLLLYELVMEPYVQLREVDISATSFATWHATAQNL 2413
             ID   PV+Q SI DPYV L   NG+++         + LRE   +       H T  +
Sbjct: 612  PIDVGSPVVQVSIADPYVCLRVLNGQVIT--------LALRETRGTPRLAINKH-TISSS 662

Query: 2412 TQLTSISIYADASEIMKFAAAEKSMXXXXXXXGEVSTAENAMMKKEQHEEAILLHGEDDD 2233
              + +IS Y D S +  F      +            +    MK E + +      +++D
Sbjct: 663  PAVVAISAYKDLSGL--FTVKGDDINLTGSSNSAFGHSFGGYMKAEPNMKV----EDEED 716

Query: 2232 FLYGDEDETIMEQNFPVENGEATIKQSNTRKRKRLGHDAIQSSRGGEQSDAIDPTRTFSS 2053
             LYGD         F + +     KQS  +         +Q+
Sbjct: 717  LLYGDAGSA-----FKMNSMADLAKQSKQKNSDWWRRLLVQAKP---------------- 755

Query: 2052 ISHWLIVSHENGRLSIHSLPEMEVVYQIGRFSNVPELLVDLTVXXXXXXXXXXXXXXXXX 1873
             S+WL+V+ ++G L I+S+P+M++VY +    N   +L D
Sbjct: 756  -SYWLVVARQSGTLEIYSMPDMKLVYLVNDVGNGSMVLTD------------------AM 796

Query: 1872 ASVPTDEAEQLNTE--MKQLC-------ERVLEAQIVGMGINQAHPILMAIVDEQVVLYE 1720
              VP     Q N++  + Q C          LE  ++G+G+N   P+L+     ++++Y+
Sbjct: 797  EFVPISLTTQENSKAGIVQACMPQHANSPLPLELSVIGLGLNGERPLLLVRTRVELLIYQ 856

Query: 1719 MFSSSNPIPGHLGISFRKLPHFICL---RTSSHLNSDGKRAPFEMKINNGKRFSLIHPFE 1549
            +F       GHL I FRK+     L    T   L+ + ++   E      K    + PF
Sbjct: 857  VFRYPK---GHLKIRFRKMDQLNLLDQQPTHIDLDENDEQEEIESYQMQPKYVQKLRPFA 913

Query: 1548 RVSSVNNGVMIVGAVPTLLVYGAWGGMQTHQMTVDGPIKAFTPFNNENVLHGIVYMTQHK 1369
             V  + +GVM+ G  P  +     G ++ H++  +G +++F  FNN N+ +G +Y
Sbjct: 914  NVGGL-SGVMVCGVNPCFVFLTFRGELRIHRLLGNGDVRSFAAFNNVNIPNGFLYF-DTT 971

Query: 1368 SELRIARMHPDFDYEMPYPVKKIEVGRTIHHVRYLMNSDVYAVVSSIPKPSNKIWVVMND 1189
             EL+I+ +     Y+  +PV+K+ +  T   + Y   + VY +++   +P  K +    +
Sbjct: 972  YELKISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYRFNGE 1031

Query: 1188 DKQEEIHEKDENFVLPAPPKYTLNLFSSQDWAAVPNTEISFEDMEAVTACEDVALKSEST 1009
            DK+     + E F+ P   ++ + L S + W  VP+  I+FE  E VTA + V L  E T
Sbjct: 1032 DKELSEESRGERFIYPIGSQFEMVLISPETWEIVPDASITFEPWEHVTAFKIVKLSYEGT 1091

Query: 1008 ISGLETLLAMGTVNNYGEEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVT 829
             SGL+  L +GT  NY E++  RG I + ++IEVVPEP +P +  KIK +F KEQKGPV+
Sbjct: 1092 RSGLKEYLCIGTNFNYSEDITSRGNIHIYDIIEVVPEPGKPMTKFKIKEIFKKEQKGPVS 1151

Query: 828  GLCAINGLLLCGMGQKVFIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSL 649
             +  + G L+ G+GQK++IWQ +D DL+G++F+D + YV+Q+ +++++    D  +S+SL
Sbjct: 1152 AISDVLGFLVTGLGQKIYIWQLRDGDLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISL 1211

Query: 648  IRFQEDNKAMSIASRDDRKCAQPPMASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESN 469
            +RFQE+ + +S+ASRD           + +VD +++GFL++D   NI ++ Y PEA ES
Sbjct: 1212 LRFQEEYRTLSLASRDFNPL--EVYGIEFMVDNSNLGFLVTDAERNIIVYMYQPEARESL 1269

Query: 468  GGERLTVRAAINIGTNINAFVRLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVR 289
            GG++L  +A  ++G  +N   R++ H   L   ++ +    E +   V+ +LDG+ G+
Sbjct: 1270 GGQKLLRKADYHLGQVVNTMFRVQCHQKGL---HQRQPFLYENKHFVVYGTLDGALGYCL 1326

Query: 288  PLTEKSYRRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRN-ARNLIDGDVVEQY 112
            PL EK YRR   LQ  + S    + GL+ K  R+ K S+    G N +R +IDGD++  Y
Sbjct: 1327 PLPEKVYRRFLMLQNVLLSYQEHLCGLNPKEYRTLKSSKK--QGINPSRCIIDGDLIWSY 1384

Query: 111  LHLSLYDKTDLARRLGVGRYHIIDDLMQLRRMA 13
              ++  ++ ++A+++G     I+ DL+++ R+A
Sbjct: 1385 RLMANSERNEVAKKIGTRTEEILGDLLEIERLA 1417




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