hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/AH10.1
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Query:  AH10.1  CE07655   4-coumarate:coenzyme A ligase status:Partially_confirmed TR:O02200 protein_id:CAB02686.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
AMP-binding AMP-binding enzyme                          323.9    1.9e-93   1
Avirulence  Xanthomonas avirulence protein, Avr/PthA      5.9       0.12   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Avirulence    1/1     307   347 ..     1    38 [.     5.9     0.12
AMP-binding   1/1      50   472 ..     2   373 .]   323.9  1.9e-93

Alignments of top-scoring domains:
Avirulence: domain 1 of 1, from 307 to 347: score 5.9, E = 0.12
                   *->hgLtPd.qvvAiAsniGGkqALEtvqRLLP..vLCqAHGLt<-*
                      +++ P  +v+  A    Gkq  E vq+  P+  LCqA G+t
      AH10.1   307    FNVAPYlKVIMSAGATAGKQLCEEVQKRFPnaWLCQAYGMT    347

AMP-binding: domain 1 of 1, from 50 to 472: score 323.9, E = 1.9e-93
                   *->YrELderanrlAaaLralGvgpGdrVaillpnspelvvailAvlkaG
                      Yr+++  +n lA aL++lG +pGd+ a + pn+pe+++a+lAv+k G
      AH10.1    50    YRDVEPTVNSLATALVKLGFKPGDVAAQAFPNCPEFLIAMLAVMKCG 96

                   aayvPldpsypaerlayiledsgakllltddallarl.............
                   +a +   + +++ +l+ +++ds+ ++++td++ lar+  ++++ +++ +
      AH10.1    97 GAMSNASAIFTDYELQLQFKDSNTSIVFTDEDRLARVrrsvakcpgvrki 146

                   .........................s.e.p.ppvdpddlAyiiYTSGTTG
                       + +  ++ ++ + + ++ + +++++ ++ v+pd +A++ Y+SGTTG
      AH10.1   147 iclrtfplraefpenvldfveltqtPdQpInVVVSPDAIALLPYSSGTTG 196

                   kPKGVmltHrnlvnlvaala.rf.l.pdd.a..........ervlllapp
                   +PKG++ltH n+ ++++ ++++++ +  + + ++++++ ++e+vlll+p
      AH10.1   197 RPKGCQLTHKNISAMLDIAQsHLeTeVAQaMfgkekptwnkEHVLLLLP- 245

                   lyhfdgsvwelfgpLlaGatlvlvpkftryrdp.alldliekykvTvlfl
                      ++ ++  ++ ++l+Gat  ++ kf+       +l  i+ ykv  ++l
      AH10.1   246 -WYHAYGLNTMLETILLGATGLVFKKFD----TiVMLNRIKFYKVKLAWL 290

                   vPtllrlllaape.....dlssLrlvlsgGealppellrrlrerfgsggv
                   vP++l  l+++p  +  +  + L++++s+G+   ++l++++++rf+  ++
      AH10.1   291 VPPMLIFLAKDPMvpifnVAPYLKVIMSAGATAGKQLCEEVQKRFP--NA 338

                   rlvngYGpTEttvvatanppg.d..pgsiGrPlpgvevyvlDeeg.rpvp
                    l ++YG+TE   ++t    ++++   ++G   p +e+++lD eg+++ +
      AH10.1   339 WLCQAYGMTEMVQFTTLPIFEhGncFETVGSLGPTYEMKILDKEGkEVDK 388

                   pGevGELyirGwpgvarGYlnrPelTaerFvadgwgRmYrTGDlarwdpD
                      vG L+ rG p +++GYl+ +e   + +++dg+   ++TGDl+ +d
      AH10.1   389 TDTVGQLCFRG-PTIMKGYLKKEE--SDIIDKDGF---LKTGDLGSVDQK 432

                   GyleilGRiDdqvKirGerIepgEiEavLlehPgVaeAaV<-*
                   G ++++GRi++++K++G ++ p EiE+vLl hP+V+++aV
      AH10.1   433 GRVHVTGRIKELIKVNGMQVPPVEIEDVLLLHPKVKDCAV    472

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