hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/AH6.5
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Query:  AH6.5  CE26846  locus:mex-6 zinc finger protein status:Partially_confirmed SW:Q09436 protein_id:CAA88088.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and simil    64.6    7.7e-18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-CCCH    1/2     274   301 ..     1    27 []    28.8  5.5e-07
zf-CCCH    2/2     318   346 ..     1    27 []    40.3  1.9e-10

Alignments of top-scoring domains:
zf-CCCH: domain 1 of 2, from 274 to 301: score 28.8, E = 5.5e-07
                   *->yktelCrffsrtG.tCkyGdrCkFaHge<-*
                      +kt+lC++++++ + C  G+rCkFaHg
       AH6.5   274    FKTRLCMTHAAGInPCALGARCKFAHGL    301

zf-CCCH: domain 2 of 2, from 318 to 346: score 40.3, E = 1.9e-10
                   *->yktelCrffsrtG..tCkyGdrCkFaHge<-*
                      ykt+lC++f+r+G++ C+yG rC F H+
       AH6.5   318    YKTKLCKNFARGGsgVCPYGLRCEFVHPS    346

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