hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0019.1
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Query:  B0019.1  CE19654    status:Partially_confirmed TR:Q9XXU5 protein_id:CAA15509.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Amino_oxidase Flavin containing amine oxidoreductase    106.5    1.3e-28   1
Thi4          Thi4 family                                33.0    2.8e-09   1
pyr_redox     Pyridine nucleotide-disulphide oxidored    22.9    7.6e-06   1
GMC_oxred_N   GMC oxidoreductase                         15.3     0.0025   1
DAO           FAD dependent oxidoreductase               13.2      0.013   1
FAD_binding_3 FAD binding domain                         13.0     0.0048   1
3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD bi     4.6        3.1   1
GIDA          Glucose inhibited division protein A        4.2        2.5   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
GIDA            1/1      46    54 ..     1     9 [.     4.2      2.5
3HCDH_N         1/1      42    57 ..     1    16 [.     4.6      3.1
FAD_binding_3   1/1      48    62 ..     1    15 [.    13.0   0.0048
DAO             1/1      46    64 ..     1    19 [.    13.2    0.013
GMC_oxred_N     1/1      46    78 ..     1    33 [.    15.3   0.0025
Thi4            1/1      47    79 ..    29    61 ..    33.0  2.8e-09
pyr_redox       1/1      47    84 ..     1    47 [.    22.9  7.6e-06
Amino_oxidase   1/1      55   491 ..     1   426 []   106.5  1.3e-28

Alignments of top-scoring domains:
GIDA: domain 1 of 1, from 46 to 54: score 4.2, E = 2.5
                   *->fDVIVIGGG<-*
                      +DVIV+G+G
     B0019.1    46    YDVIVVGAG    54

3HCDH_N: domain 1 of 1, from 42 to 57: score 4.6, E = 3.1
                   *->akdvkqVaViGaGlMG<-*
                      ++++ +V V+GaGl G
     B0019.1    42    QQTIYDVIVVGAGLTG    57

FAD_binding_3: domain 1 of 1, from 48 to 62: score 13.0, E = 0.0048
                   *->VLIVGgGPaGLmlAl<-*
                      V++VG+G++GL +A+
     B0019.1    48    VIVVGAGLTGLTAAR    62

DAO: domain 1 of 1, from 46 to 64: score 13.2, E = 0.013
                   *->mdvvVIGgGViGlgtAldl<-*
                      +dv+V+G+G +Gl+ A+ +
     B0019.1    46    YDVIVVGAGLTGLTAARNI    64

GMC_oxred_N: domain 1 of 1, from 46 to 78: score 15.3, E = 0.0025
                   *->yDyIivGGGSAGcvlAaRLSNeDpntsVllLEa<-*
                      yD+I+vG+G++G++ A       p +sVl+LEa
     B0019.1    46    YDVIVVGAGLTGLTAARNIQQNRPGLSVLVLEA    78

Thi4: domain 1 of 1, from 47 to 79: score 33.0, E = 2.8e-09
                   *->DVvIVGAGpSGLtAAYyLAkkRPglKVaiiErs<-*
                      DV++VGAG  GLtAA+ +  +RPgl V+++E++
     B0019.1    47    DVIVVGAGLTGLTAARNIQQNRPGLSVLVLEAR    79

pyr_redox: domain 1 of 1, from 47 to 84: score 22.9, E = 7.6e-06
                   *->dvvIIGgGpAGlaAAiraaragflGrkrlkvalvEkepplkrgtlGG
                      dv+++G+G  Gl+AA+ + + +  G   l v++ E++     g +GG
     B0019.1    47    DVIVVGAGLTGLTAARNIQQ-NRPG---LSVLVLEAR-----GQVGG 84

                   <-*

     B0019.1     -     -

Amino_oxidase: domain 1 of 1, from 55 to 491: score 106.5, E = 1.3e-28
                   *->laGLaAAreLlraGf...VtvlEArdRvGGRvrtvrlkggdadgfli
                      l+GL+AAr  +++  + +V+vlEAr+ vGGR+r   ++
     B0019.1    55    LTGLTAARNIQQNRPglsVLVLEARGQVGGRIRYATMQ--------T 93

                   elGamwflgaypn.vlnlllelglelglelppft................
                    +G  ++ ++++   ++ ++ l l+++l++  ++    +++      +++
     B0019.1    94 RNGVEFVDTGSQFiSPTDTQLLSLIQELNVRTTQqltcgnntvfqqtrkk 143

                   .........................elleldlesfsdlllaggflel...
                   +  +     +     +  ++++  + l++     +s+ ++ ++++++++
     B0019.1   144 rqlslqqqwsttlftdlinspetlgNLTNTSVSAMSQQMDTADADSVnrm 193

                   ll.galeflele.sar.lallslrllgledgggtfpggglllplGglpvl
                   + +++ + +e  +  + +++ s+++ ++ + ++ f+ g++ll +Gg++++
     B0019.1   194 MQtFFDAPGEQVpEIQlALTCSSQNATAVEILRRFGHGQSLLAQGGMNEV 243

                   laaaagllggrvrlnapVrkisqegdgdsndsgaenvtvttvdGekltkg
                   ++++a+ l  ++ +++p                   + v+t++G+
     B0019.1   244 VRRLADGL--LIEYSQPAFP----------------AVVQTSAGR----- 270

                   desetieaDaVivtvPlgvlk...flPpLpaakqeai.rrlgfgsvsKvf
                        +++++Viv+vP+++l + +++P+ +a+ q++i+++ + g +  ++
     B0019.1   271 ----RFSGRQVIVAVPIPTLEnieLVPAPEAPFQQLIqNYGPTGHAYYFT 316

                   lefetpfwpengdhlfgavkgdlfgflvtdge.lsrgeyvldtsktdgsa
                   + f ++ w+ ng         + +  ++t+  +  ++++++dt+++ +++
     B0019.1   317 MSFQRATWRLNG---------RSGKVIYTSATgPLVWLTTFDTTFAASCD 357

                   pewgrgvllsyvlgdgan...nreledlsdeelleavledLrkllgsdfe
                   +++ +   l++++   ++ + +++    + +  + +   d+++l  sd++
     B0019.1   358 NSTSASSTLWGIAHFSYDvpfETRRKLYTQAIMYSLRFADFSPLDVSDVN 407

                   .dvpdPvtagdyrdtvvtrWstdpfprgsysyppvgad......drpalr
                    ++ d  ++     t+ t     p+    y  ++    ++ +  + ++++
     B0019.1   408 fATDDLAKG-----TIPTLKLNIPLESLKYLNDFHTLYqnvhiaTADIAS 452

                   ePvgnenpkdgdpglyfAGehtsgvyp.gtveGAveSGlraArril<-*
                   + +g+        +  ++ +   ++ +++t++GAv+++  ++  +l
     B0019.1   453 HNLGG-------LNQTLTDCNFVQRQFrSTMNGAVHAAGSVSTYVL    491

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