hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0024.11
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Query:  B0024.11  CE05155   Uncharacterized protein family UPF0024 status:Partially_confirmed SW:Q17426 protein_id:CAA94883.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
UPF0024  Uncharacterized protein family UPF0024         808.8   1.2e-251   1
UPF0054  Uncharacterized protein family UPF0054           4.8          5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UPF0054    1/1     202   217 ..     1    16 [.     4.8        5
UPF0024    1/1      88   525 ..     1   462 []   808.8 1.2e-251

Alignments of top-scoring domains:
UPF0054: domain 1 of 1, from 202 to 217: score 4.8, E = 5
                   *->VsddeIhelNkkfRgk<-*
                      V +++I+ lN k+Rg+
    B0024.11   202    VHERTILDLNSKLRGI    217

UPF0024: domain 1 of 1, from 88 to 525: score 808.8, E = 1.2e-251
                   *->klsfmplkhnklsteakttflkFlkakpeDFiVeEiledGilveqgk
                      k++++++k+++ls+e+++++++F+++++++++++E++edGilv++g+
    B0024.11    88    KGDPVLVKVDDLSKEDRKSIHHFIRERYAGVLITETKEDGILVSHGH 134

                   gnefrgeeGVENlgdekkGefihftlrKenkeTlfavqliAKflgVpsre
                   ++++r+++    l+dek+++++hft++KenkeT+fa+qliAKfl+V++++
    B0024.11   135 TKSSRKRK----LWDEKVPKECHFTICKENKETSFACQLIAKFLNVGPNN 180

                   igYAGlKDKrAVTtQrvSclkvklerLetpdllnfklkGikileynrhdr
                   i+++G+KDKrAVT+QrvS++kv+++   t+++ln+kl+Gi++++++++d+
    B0024.11   181 IRTHGIKDKRAVTSQRVSVTKVHER---TILDLNSKLRGIRVFGCEYKDD 227

                   kirLGdLkGNrFtivlReleklseqklkerLekickfGyENGfpNYFGsQ
                   ++++G+++GNrF+ivlR+l+++seq+l++rLe+++++G    f+NYFG+Q
    B0024.11   228 PVQMGAHWGNRFSIVLRSLPDDSEQLLHQRLETFQNTG----FINYFGTQ 273

                   RFGsfsdntqeagrwiqgrdWekAaklIlSDqetklpdskkklikdlrsf
                   RFGs+s++t+e+g++i++rdWekA+k+I+   ++++pd++++++++++++
    B0024.11   274 RFGSRSSTTAEIGLAIVKRDWEKAVKMIM---TNAMPDHLGYGSVGYAAK 320

                   llsaagdaekfnellkkrlkkstlevnmvkelkkeDGtYSEgayqkalsv
                   ++s++gda+k++++lk++++++t+e+n++k+l+k+      g++q+++++
    B0024.11   321 CFSQTGDARKAFSKLKGAQAFATVEGNILKCLSKG------GTWQNCITE 364

                   addkqlrtlyvqAYQSylwNeivsrraelyglkeaesDl.vidlsleeel
                   a+++q+r+lyv+AYQS++wN+++srr+++yg++++esD++++++sl+e++
    B0024.11   365 AIPIQSRSLYVHAYQSLIWNKVASRRVKEYGTRVHESDVgANGFSLGEHA 414

                   etllkaekfpeevlnaekarkakviqeeiEaegremellselkkResLte
                   +++++++++p+e+l++e++++ak+i+e++E++g++++++++lk+R+sL+e
    B0024.11   415 THYDIHIPLPGENLPFEGSYGAKWISELLEEDGLTQSSFTALKDRFSLGE 464

                   SSRCvlleskgelwkFiedvraadllekdqlelrfyledeskaGSYatql
                   SSRC+++e+k+++wkFi++++a+dll+ d+l++r+++e+e+k++++a+q+
    B0024.11   465 SSRCLFVEAKELKWKFIRYGNARDLLQ-DGLQTRAIPEAEQKGPLLALQI 513

                   vkelelEYRkgnYate<-*
                   +++l++    g+Yat+
    B0024.11   514 QFSLIS----GSYATV    525

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