Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0024.9
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Query: B0024.9 CE05153 thioredoxin status:Confirmed SW:Q17424 protein_id:CAA94881.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
thiored Thioredoxin 94.1 4.6e-27 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
thiored 1/1 11 118 .. 1 116 [] 94.1 4.6e-27
Alignments of top-scoring domains:
thiored: domain 1 of 1, from 11 to 118: score 94.1, E = 4.6e-27
*->ssvvvvltdenFdeevlkaksdkpVLVdFyApWCGpCKmlAPeyekl
+sv + + e F e+v++ s+ pV+VdF+A+WCGpC++l P +e+
B0024.9 11 ASVFDIDSVEDFTEKVIQ--SSVPVIVDFHAEWCGPCQALGPRLEEK 55
AqeykgesddvkfaKVDaDenpkdlAskygVrgfPTlkffknGkkepvdy
+ +g v +aK+++D + +lA +yg++++PT + fknG+k ++
B0024.9 56 VNGRQG---SVLLAKINVD-HAGELAMDYGISAVPTVFAFKNGEK--ISG 99
vgGArtkddLvafikkhlg<-*
+ G+ + ++L +fi++ l+
B0024.9 100 FSGVLDDEQLDDFIEDVLA 118