Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0034.3a
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Query: B0034.3a CE27048 status:Confirmed TR:Q9BIB5 protein_id:AAK31387.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
cadherin Cadherin domain 37.8 1.1e-09 1
DedA DedA family 5.6 2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
cadherin 1/1 147 236 .. 1 104 [. 37.8 1.1e-09
DedA 1/1 854 878 .. 1 25 [. 5.6 2
Alignments of top-scoring domains:
cadherin: domain 1 of 1, from 147 to 236: score 37.8, E = 1.1e-09
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
y+++v+E+ +v ev++++A+D+D ++ + Y i++g + F+
B0034.3a 147 YTFHVEEG-KVVEEVGVLKASDKDCGHPNGEICEYEITNGLKELPFA 192
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
I+ G+ ++tt+pL+ + Y Ltv+A D++ + +++s
B0034.3a 193 INN-HGV----LRTTQPLNFTQS--KSYILTVVAIDCA------MRKSKS 229
statvti<-*
s +tv++
B0034.3a 230 SLVTVHV 236
DedA: domain 1 of 1, from 854 to 878: score 5.6, E = 2
*->favlsvgfieagliigpiiPgdill<-*
+v++vgf+ +l+ig+++ +d+++
B0034.3a 854 VVVVCVGFLLVLLVIGVLKMRDTPM 878