hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0212.3
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Query:  B0212.3  CE16769    status:Partially_confirmed TR:O45063 protein_id:AAC02565.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
SPK            Domain of unknown function (DUF545)      617.8   6.2e-182   3
Staphylokinase Staphylokinase/Streptokinase family        4.0        8.6   1
Xlink          Extracellular link domain                  1.6        4.1   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
SPK              1/3       5   113 ..     1   115 []   205.0  1.1e-57
SPK              2/3     127   239 ..     1   115 []   213.0  4.5e-60
SPK              3/3     254   364 ..     1   115 []   213.6    3e-60
Staphylokinase   1/1     341   374 ..    98   131 .]     4.0      8.6
Xlink            1/1     515   528 ..     1    17 [.     1.6      4.1

Alignments of top-scoring domains:
SPK: domain 1 of 3, from 5 to 113: score 205.0, E = 1.1e-57
                   *->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglsesty
                       elt+fmdFLve+TKd++    P+ va kvf++F ++  +++  +
     B0212.3     5    DELTEFMDFLVEQTKDSIY---PM-VAAKVFKQFPNRRLIPK--DKR 45

                   ykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiGtVeL
                   y+RF  +LAP+m+++nnYSiE+R+RlM+aL+gkVeddFL+rie +GtV+L
     B0212.3    46 YQRFVLQLAPKMNDWNNYSIEARIRLMYALRGKVEDDFLARIEAHGTVQL 95

                   DekkRIckYtSnDGklkL<-*
                    ek+RI+k+t+nDG++ L
     B0212.3    96 NEKQRISKFTANDGTFFL    113

SPK: domain 2 of 3, from 127 to 239: score 213.0, E = 4.5e-60
                   *->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglse.st
                       e++++m FL+ekTKdave   Plp  +++f+eFs+ e+ +++ ++
     B0212.3   127    LEFVKLMGFLIEKTKDAVE---PLPNTKLIFQEFSQIEPVKKPNdTD 170

                   yykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiGtVe
                   ++++F++ LAP m+k+n+YSiE+RvRlMFaL+gk++d FL++iet+Gt +
     B0212.3   171 IMYKFRSSLAPYMDKWNDYSIEDRVRLMFALGGKIKDGFLRTIETHGTLQ 220

                   LDekkRIckYtSnDGklkL<-*
                   LD+k+RI+kY+SnDG++kL
     B0212.3   221 LDDKRRITKYVSNDGNFKL    239

SPK: domain 3 of 3, from 254 to 364: score 213.6, E = 3e-60
                   *->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglsesty
                      +e+trfmdFL++ TK ave   P+  +++v +eF++ eg++ s s y
     B0212.3   254    PEYTRFMDFLIKTTKEAVE---PM-RVWLVHNEFKRQEGRKFSKSGY 296

                   ykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiGtVeL
                   +kRFh+kLAPnm+k++nY iEeR R+MFa++gkVe+dFL++ie++G V+L
     B0212.3   297 AKRFHKKLAPNMSKWTNYKIEERTRMMFAMKGKVESDFLAQIEESGKVQL 346

                   DekkRIckYtSnDGklkL<-*
                   De++ I+kYtS+++k kL
     B0212.3   347 DENHLIVKYTSKNRKIKL    364

Staphylokinase: domain 1 of 1, from 341 to 374: score 4.0, E = 8.6
                   *->nfkypllskdgieelynqprntdlisekyevekk<-*
                      ++k+ l+++++i+ ++  +r+++l  e++ vekk
     B0212.3   341    SGKVQLDENHLIVKYTSKNRKIKLGGETRLVEKK    374

Xlink: domain 1 of 1, from 515 to 528: score 1.6, E = 4.1
                   *->GeVFhyrapsgRYkltF<-*
                       +V+h+++ +   kl++
     B0212.3   515    QGVYHVEPET---KLSY    528

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