hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0222.7
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Query:  B0222.7  CE06698    status:Partially_confirmed TR:Q17459 protein_id:AAA92324.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Collagen      Collagen triple helix repeat (20 copies    98.1    1.7e-25   3
Col_cuticle_N Nematode cuticle collagen N-terminal do    95.1    7.2e-27   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Col_cuticle_N   1/1      13    74 ..     1    66 []    95.1  7.2e-27
Collagen        1/3     102   127 ..    35    60 .]    17.0   0.0036
Collagen        2/3     148   206 ..     1    60 []    51.6    1e-12
Collagen        3/3     218   277 ..     1    60 []    46.5  2.7e-11

Alignments of top-scoring domains:
Col_cuticle_N: domain 1 of 1, from 13 to 74: score 95.1, E = 7.2e-27
                   *->SgvAvlacLftvpsiyndInsfqdevmdemdeFKvyaddaWneMvdv
                      +++Avla+Lftvps+yn+In+ +d+v+d+++ F+v++d aW+eM+d+
     B0222.7    13    ASIAVLAVLFTVPSLYNTINEVHDQVLDGVSVFRVETDSAWTEMMDI 59

                   qrnvrppskpasarfgrpf<-*
                   q++v+pp+kp    +++pf
     B0222.7    60 QITVTPPTKP----RVNPF    74

Collagen: domain 1 of 3, from 102 to 127: score 17.0, E = 0.0036
                   *->epGpPGppGppGppGppGapGapGpp<-*
                      +pGpPGppG+pG+pG pGapG++G
     B0222.7   102    PPGPPGPPGQPGAPGTPGAPGPKGDD    127

Collagen: domain 2 of 3, from 148 to 206: score 51.6, E = 1e-12
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                       p Gp+Gp+Gp Gp+Gp+Gp G++G+pG +G+ G+pG+PG+pG +G+
     B0222.7   148    -PQGPAGPAGPSGPAGPAGPDGQPGFPGQRGNDGFPGAPGAPGDNGQ 193

                   pGppGapGapGpp<-*
                   pG pG++G pG+p
     B0222.7   194 PGTPGQDGFPGQP    206

Collagen: domain 3 of 3, from 218 to 277: score 46.5, E = 2.7e-11
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      G+pG pG +Gp+Gp+G  G+pG++GapGp+Gp+G +G+PG +G +G+
     B0222.7   218    GAPGAPGNAGPAGPAGQDGFPGQDGAPGPAGPAGQDGFPGNAGSDGQ 264

                   pGppGapGapGpp<-*
                   pG pG pG pG
     B0222.7   265 PGAPGGPGLPGND    277

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