Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0252.2
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Query: B0252.2 CE30230 Spingomyelin phosphodiesterase status:Partially_confirmed TR:Q10916 protein_id:AAC46756.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Metallophos Calcineurin-like phosphoesterase 70.8 1.1e-17 1
APG9 Autophagy protein Apg9 3.9 2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Metallophos 1/1 158 419 .. 1 124 [] 70.8 1.1e-17
APG9 1/1 501 516 .. 1 16 [. 3.9 2
Alignments of top-scoring domains:
Metallophos: domain 1 of 1, from 158 to 419: score 70.8, E = 1.1e-17
*->mrilvigDlHggfedl...............................
+ +l+++DlH +fe+ +++ + +++ + + +++++ + ++ +
B0252.2 158 LNVLQLTDLHVDFEYKypseancddpvccrvsvsepkkaagywgsvg 204
..........llllela.e.kpdlvlflGDlvdrgppslevllll.....
+ + + + ++ l ++++ + +d+v+ +GD++++ +++ ++ l+ ++
B0252.2 205 kcdipfwtveNMLSHINkThMIDMVIMTGDYINHVDWEYSIEEHLsvlrk 254
...falklkapgpvylvrGNHDfdsgnsvy....................
++++++ + p+y+++GNH+ ++ns+++++ + +++ + ++ +
B0252.2 255 lhrLVQNTFPSTPIYWALGNHEGVPVNSFAphsvderfwptwlykefqtm 304
..................................................
++++ + + +++ + ++++ ++ + + ++ +++ + + ++
B0252.2 305 sgpwlsegakdsllkrgsystqvmdglklitlntgfcevtnfflylnqsd 354
..welfleef.lllla.lvdgkillvHgglspd...........leellk
++ + +++++l + +++++ +++l+H ++ +++ +++ + + +
B0252.2 355 pdSSMSWFVKeLFESEkKGEQVYVLAHIPPGDSeclegwafnyyRVIQRF 404
.ngvdlvirGHtH.p<-*
+ + + ++GH+H +
B0252.2 405 sSTIAAQFFGHDHlD 419
APG9: domain 1 of 1, from 501 to 516: score 3.9, E = 2
*->DdeLptltWqeVlqRi<-*
+d+L l+W V+q++
B0252.2 501 MDDLSPLSWNKVIQKL 516