Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0261.2a
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Query: B0261.2a CE07705 kinase status:Partially_confirmed TR:O01438 protein_id:AAB52354.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FAT FAT domain 859.5 1.1e-254 1
PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase 360.5 1.7e-104 1
FATC FATC domain 65.0 2.6e-20 1
Armadillo_seg Armadillo/beta-catenin-like repeat 7.0 3.4 4
HEAT HEAT repeat 6.9 2.3 3
RuvA RuvA N terminal domain 4.7 6.4 1
MAP1_LC3 Microtubule associated protein 1A/1B, 3.6 8.6 1
Rubrerythrin Rubrerythrin 3.5 9.1 1
Polysacc_synt_2 Polysaccharide biosynthesis protein 2.3 8 1
OKR_DC_1 Orn/Lys/Arg decarboxylase, major doma 2.3 8.6 1
PolC_DP2 DNA polymerase II large subunit DP2 -2.6 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HEAT 1/3 248 270 .. 17 39 .] 2.8 39
HEAT 2/3 610 632 .. 17 39 .] 4.0 17
Armadillo_seg 1/4 702 722 .. 21 40 .] 3.8 28
HEAT 3/3 810 824 .. 1 16 [. 0.4 1.9e+02
Armadillo_seg 2/4 837 849 .. 28 40 .] 0.1 3.1e+02
Rubrerythrin 1/1 1210 1223 .. 133 146 .] 3.5 9.1
Polysacc_synt_2 1/1 1375 1408 .. 525 563 .] 2.3 8
Armadillo_seg 3/4 1484 1504 .. 19 37 .. 1.1 1.6e+02
Armadillo_seg 4/4 2108 2137 .. 13 40 .] 2.4 68
OKR_DC_1 1/1 2120 2141 .. 484 505 .] 2.3 8.6
FAT 1/1 1438 2153 .. 1 722 [] 859.5 1.1e-254
PolC_DP2 1/1 2170 2179 .. 1 10 [. -2.6 8.3
RuvA 1/1 2522 2534 .. 1 13 [. 4.7 6.4
MAP1_LC3 1/1 2538 2553 .. 1 18 [. 3.6 8.6
PI3_PI4_kinase 1/1 2357 2608 .. 1 335 [] 360.5 1.7e-104
FATC 1/1 2665 2697 .] 1 33 [] 65.0 2.6e-20
Alignments of top-scoring domains:
HEAT: domain 1 of 3, from 248 to 270: score 2.8, E = 39
*->akDeepeVRlaaaesLgklakvl<-*
+ D++p VR a +++L+++ ++
B0261.2a 248 VRDKNPAVRIAGIDALHVVLTIV 270
HEAT: domain 2 of 3, from 610 to 632: score 4.0, E = 17
*->akDeepeVRlaaaesLgklakvl<-*
++ ++ e+Rlaa++s+++++ +
B0261.2a 610 LTADNVEIRLAAVSSCCEMVVPF 632
Armadillo_seg: domain 1 of 4, from 702 to 722: score 3.8, E = 28
*->Ls.pdeevqeeAawALsNLaa<-*
L++++ e+q+++++ L+ La
B0261.2a 702 LHdEKLEMQQACVTLLGRLAE 722
HEAT: domain 3 of 3, from 810 to 824: score 0.4, E = 1.9e+02
*->gpeitkeeLlPllldL<-*
g ei+k +L Pl+++L
B0261.2a 810 GAEIVK-NLKPLFEKL 824
Armadillo_seg: domain 2 of 4, from 837 to 849: score 0.1, E = 3.1e+02
*->qeeAawALsNLaa<-*
+e+A++A++ +++
B0261.2a 837 REAALRAIGGICR 849
Rubrerythrin: domain 1 of 1, from 1210 to 1223: score 3.5, E = 9.1
*->kiHaerykkLleni<-*
++H+e y+kL++++
B0261.2a 1210 SVHYEQYRKLAQRA 1223
Polysacc_synt_2: domain 1 of 1, from 1375 to 1408: score 2.3, E = 8
*->ErePLpwaeLerlLedLdaaceafdyervRelLleavtg<-*
+r+ L+ a+++ ++++Ld +++++ + + Ll+a+++
B0261.2a 1375 ARD-LFPAAFMSVWTELDSDVQND----LTSCLLRAIST 1408
Armadillo_seg: domain 3 of 4, from 1484 to 1504: score 1.1, E = 1.6e+02
*->qLLs..pdeevqeeAawALsN<-*
+L++ ++ +vqeeAa+++++
B0261.2a 1484 SLITyaNKLNVQEEAAGVVRY 1504
Armadillo_seg: domain 4 of 4, from 2108 to 2137: score 2.4, E = 68
*->alppLvqLLs..pdeevqeeAawALsNLaa<-*
a+p L+ L+ ++d++ ++ ++++L+ +a+
B0261.2a 2108 AIPQLMARLDcpDDQKSVQLVLRVLCEIAR 2137
OKR_DC_1: domain 1 of 1, from 2120 to 2141: score 2.3, E = 8.6
*->etrtkaatLleaLtefarhlde<-*
+++ +++ l++L+e+arh ++
B0261.2a 2120 DDQKSVQLVLRVLCEIARHRPQ 2141
[output cut off at A = 10 top alignments]